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Oryza sativa
cluster # 13529 cluster # 13529       Sequences # 13       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13529#0 length = 1568 sequences # 12  
consensus_13529#1 length = 692 sequences # 1  

consensusID : consensus_13529#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1568
fasta sequence
                              [TCCTCGTGTCCAATTGACGACCCGGCCCAGCTTCATCTGGTAAGTGGTAACCCTAAACCCCCTTCCTCTCTTCCGGCGCCTGGGCGCTCTTCCCCCCTCTTCCCCGCCGCAATGAGGCGCTTGGTGACGCACCTCCACCGCCTCTCCCACCGCGCCATCCCTTCCCCGCCTCCATCTCGACCCCCAACCACCACTAGCCTCCCCTTCCTCCTCTCCCGCCGCCTCCTCTCCGACGACGCCGCGCCTCCGCCCGCCGCCGACGTCCCAAACAAAGAGCTGAAGCGGCGGTTGGAAACTTACTATGGGGTGGACGATGAGGCAGAACTACCATCTGTCACAGAGGCTGTTCTTGAGCGGAAGCTTGCGGATGTGCACAGCGAGACGGACGATGAACTTATCGAGGAGCTGCGCAGCAAACCACTCCCTGAGGTTCGTGACAGGGATTTTGAGTCCGACTTTGAGGAGATGCACGATACTGATGAGGAGCTGGACAACTTGTACAACGCCAGACAGTATGTGGAGAAAAAGATCAAGAGTGACGAGTTCTTTAATATGGATGACGACAAGTGGAATAAGATGATCAAGAAGGCTGTGGATAATGGCCACCTCGGTAATATGAACGAATGTGAGAATATTTTGGAGGACATGCTCCACTGGGACAAACTATTACCTGATGAAATTAAAAAGAAGGTGGAGGCCAAATTTAATGAGTTGGGGGACATGTGTGAGAAGGGAGAGCTTGAACCTGAGCAGGCTTATGAATTATTCAAAGAGTTTGAGGATAAGATGGTTTCAGAGTGCACAGAACTAATGGAAGCTGAGAACCCAACTGACGTGGATGAATTTTCTAAAATGGAAAATAAGAGTGTTAAGTTGGACGATCCACCTGGTGAGGGACCTGTTCTAAGGTGGGAGTCACGTATTGTCTTTGCTCCTGGAGGTGATGCATGGCATCCCAAAAACAGGAAAGTTAAACTCAGTGTGACTGTCAAAGAGCTGGGACTTTCACGACATGCCTTCCGACGTTTA-CGTGAGGTTGTTGGGAATAGGTA-CAATTCTGGAAAAGATGAACTCACAATAACTAGTGAAAGGTTTGAGCATC-GGGAAGAGAACAGGAAAGATTGCTTGA-GGA-CATTGTATGCT-GTAGTAGAAGATGC-AAACAAGGCCAATAA-GTT-GGCTGATGATGCTAGAAA-TGCATAT-GTT-AAAAACA-GACTTAAGG-CCAATG-CT-CAATT-CAT-GGAAA-GGTTGAAGG-TGAAGACACAGAAATTGA-GGGTAGCTGCATAA-GGGGCTCCT-GGAGCTACACGCTCTGGAACAATTCCTC-TTTCATGATATCAGTACGGTCATTTTGCAACAAAGGATGCGGCAGTGAGACGTAGAACGGGAGCAAAAATGTTTTGTTGTAATTTACATGTGTTGCCTTGTTTGGACGGCCTGTTAGGTTTATCTTTAGCTGAAGCTACACTTTTTGAATTTACCGTGACCGAGCAGGCCTGTTTACATGATCGCATAGTGAACTGGCTGTATCCTGATCTTCTCTACAAATAACAAATTGCTTCTGAAAAAAAAAAAAA]

[+] EMBL CF296839             [TCCTCGTGTCCAATTGACGACCCGGCCCAGCTTCATCTGGTAAGTGGTAACCCTAAACCCCCTTCCTCTCTTCCGGCGCCTGGGCGCTCTTCCCCCCTCTTCCCCGCCGCAATGAGGCGCTTGGTGACGCACCTCCACCGCCTCTCCCACCGCGCCATCCCTTCCCCGCCTCCATCTCGACCCCCAACCACCACTAGCCTCCCCTTCCTCCTCTCCCGCCGCCTCCTCTCCGACGACGCCGCGCCTCCGCCCGCCGCCGACGTCCCAAACAAAGAGCTGAAGCGGCGGTTGGAAACTTACTATGGGGTGGACGATGAGGCAGAACTACCATCTGTCACAGAGGCTGTTCTTGAGCGGAAGCTTGCGGATGTGCACAGCGAGACGGACGATGAACTTATCGAGGAGCTGCGCAGCAAACCACTCCCTGAGGTTCGTGACAGGGATTTTGAGTCCGACTTTGAGGAGATGCACGATACTGATGAGGAGCTGGACAACTTGTACAACGCCAGACAGTATGTGGAGAAAAAGATCAAGAGTGACGAGTTCTTTAATATGGATGACGACAAGTGGAATAAGATGATCAAGAAGGCTGTGGATAATGGCCACCTCGGTAATATGAACGAATGTGAGAATATTTTGGAGGACATGCTCCACTGGGACAAACTATTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL OSS13815A            [                                             GGTAACCCTAAACCCCCTTCCTCTCTTCCGGNGCCTGGGCG TCTTCCCCCCTCTTCCCCGCCGCAATNAGGCGCTTGGTGACGCACCTCCACCGCCTCTCCCACCGCGCCATCCCTTCCCCGCCTCCATCTCGACCCCCAACCACCACTAGCCTCCCCTTCCTCCTCTCCCGCCGCCTCCTCTCCGACGACGCCGCGCCTCCGCCCGCNGCCGACGTCCCAAACAAAGAGCTGAAGCGGCGGTTGGAAACTTACTATGGGGTGGACGATGAGGCAGAACTACCATCTGTCACAGAGGCTGTTCTTGAGCGGAAGTTTGCGGATGTGCACAGCGAGACGGACGATGAACTTATCGAGGAGCTGCGCA AAAACCACTNCCTGAGGTTCGTGACAGGGATTTTGAGTCCGACTTTNAGGAGATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK068851             [                                                     TAAACCCCCTTCCTCTCTTCCGGCGCCTGGGCGCTCTTCCCCCCTCTTCCCCGCCGCAATGAGGCGCTTGGTGACGCACCTCCACCGCCTCTCCCACCGCGCCATCCCTTCCCCGCCTCCATCTCGACCCCCAACCACCACTAGCCTCCCCTTCCTCCTCTCCCGCCGCCTCCTCTCCGACGACGCCGCGCCTCCGCCCGCCGCCGACGTCCCAAACAAAGAGCTGAAGCGGCGGTTGGAAACTTACTATGGGGTGGACGATGAGGCAGAACTACCATCTGTCACAGAGGCTGTTCTTGAGCGGAAGCTTGCGGATGTGCACAGCGAGACGGACGATGAACTTATCGAGGAGCTGCGCAGCAAACCACTCCCTGAGGTTCGTGACAGGGATTTTGAGTCCGACTTTGAGGAGATGCACGATACTGATGAGGAGCTGGACAACTTGTACAACGCCAGACAGTATGTGGAGAAAAAGATCAAGAGTGACGAGTTCTTTAATATGGATGACGACAAGTGGAATAAGATGATCAAGAAGGCTGTGGATAATGGCCACCTCGGTAATATGAACGAATGTGAGAATATTTTGGAGGACATGCTCCACTGGGACAAACTATTACCTGATGAAATTAAAAAGAAGGTGGAGGCCAAATTTAATGAGTTGGGGGACATGTGTGAGAAGGGAGAGCTTGAACCTGAGCAGGCTTATGAATTATTCAAAGAGTTTGAGGATAAGATGGTTTCAGAGTGCACAGAACTAATGGAAGCTGAGAACCCAACTGACGTGGATGAATTTTCTAAAATGGAAAATAAGAGTGTTAAGTTGGACGATCCACCTGGTGAGGGACCTGTTCTAAGGTGGGAGTCACGTATTGTCTTTGCTCCTGGAGGTGATGCATGGCATCCCAAAAACAGGAAAGTTAAACTCAGTGTGACTGTCAAAGAGCTGGGACTTTCACGACATGCCTTCCGACGTTTA CGTGAGGTTGTTGGGAATAGGTA CAATTCTGGAAAAGATGAACTCACAATAACTAGTGAAAGGTTTGAGCATC GGGAAGAGAACAGGAAAGATTGCTTGA GGA CATTGTATGCT GTAGTAGAAGATGC AAACAAGGCCAATAA GTT GGCTGATGATGCTAGAAA TGCATAT GTT AAAAACA GACTTAAGG CCAATG CT CAATT CAT GGAAA GGTTGAAGG TGAAGACACAGAAATTGA GGGTAGCTGCATAA GGGGCTCCT GGAGCTACACGCTCTGGAACAATTCCTC TTTCATGATATCAGTACGGTCATTTTGCAACAAAGGATGCGGCAGTGAGACGTAGAACGGGAGCAAAAATGTTTTGTTGTAATTTACATGTGTTGCCTTGTTTGGACGGCCTGTTAGGTTTATCTTTAGCTGAAGCTACACTTTTTGAATTTACCGTGACCGAGCAGGCCTGTTTACATGATCGCATAGTGAACTGGCTGTATCCTGATCTTCTCTACAAATAACAAATTGCTT                ]
[+] EMBL AK104896             [                                                                            CGCCTGGGCGCTCTTCCCCCCTCTTCCCCGCCGCAATGAGGCGCTTGGCGACGCACCTCCACCGCCTCTCCCACCGCGCCATCCCTTCCCCGCCTCCATCTCGACCCCCAACCACCACTAGCCTCCCCTTCCTCCTCTCCCGCCGCCTCCTCTCCGACGACGCCGCGCCTCCGCCCGCCGCCGACGTCCCAAACAAAGAGCTGAAGCGGCGGTTGGAAACTTACTATGGGGTGGACGATGAGGCAGAACTACCATCTGTCACAGAGGCTGTTCTTGAGCGGAAGCTTGCGGATGTGCACAGCGAGACGGACGATGAACTTATCGAGGAGCTGCGCAGCAAACCACTCCCTGAGGTTCGTGACAGGGATTTTGAGTCCGACTTTGAGGAGATGCACGATACTGATGAGGAGCTGGACAACTTGTACAACGCCAGACAGTATGTGGAGAAAAAGATCAAGAGTGACGAGTTCTTTAATATGGATGACGACAAGTGGAATAAGATGATCAAGAAGGCTGTGGATAATGGCCACCTCGGTAATATGAACGAATGTGAGAATATTTTGGAGGACATGCTCCACTGGGACAAACTATTACCTGATGAAATTAAAAAGAAGGTGGAGGCCAAATTTAATGAGTTGGGGGACATGTGTGAGAAGGGAGAGCTTGAACCTGAGCAGGCTTATGAATTATTCAAAGAGTTTGAGGATAAGATGGTTTCAGAGTGCACAGAACTAATGGAAGCTGAGAACCCAACTGACGTGGATGAATTTTCTAAAATGGAAAATAAGAGTGTTAAGTTGGACGATCCACCTGGTGAGGGACCTGTTCTAAGGTGGGAGTCACGTATTGTCTTTGCTCCTGGAGGTGATGCATGGCATCCCAAAAACAGGAAAGTTAAACTCAGTGTGACTGTCAAAGAGCTGGGACTTTCACGACATGCCTTCCGACGTTTA CGTGAGGTTGTTGGGAATAGGTA CAATTCTGGAAAAGATGAACTCACAATAACTAGTGAAAGGTTTGAGCATC GGGAAGAGAACAGGAAAGATTGCTTGA GGA CATTGTATGCT GTAGTAGAAGATGC AAACAAGGCCAATAA GTT GGCTGATGATGCTAGAAA TGCATAT GTT AAAAACA GACTTAAGG CCAATG CT CAATT CAT GGAAA GGTTGAAGG TGAAGACACAGAAATTGA GGGTAGCTGCATAA GGGGCTCCT GGAGCTACACGCTCTGGAACAATTCCTC TTTCATGATATCAGTACGGTCATTTTGCAACAAAGGATGCGGCAGTGAGACGTAGAACGGGAGCAAAAATGTTTTGTTGTAATTTACATGTGTTGCCTTGTTTGGACGGCCTGTTAGGTTTATCTTTAGCTGAAGCTACACTTTTTGAATTTACCGTGACCGAGCAGGCCTGTTTACATGATCGCATAGTGAACTGGCTGTATCCTGATCTTCTCTACAAATAACAA                       ]
[+] EMBL CB683379             [                                                                                              CCCTCCTTCCCGCCGCAATGAGGCGCTTGGTGACGCACCTCCACCGCCTCTCCCACCGCGCCATCCCTTCCCCGCCTCCATCTCGACCCCCAACCACCACTAGCCTCCCCTTCCTCCTCTCCCGCCGCCTCCTCTCCGACGACGCCGCGCCTCCGCCCGCCGCCGACGTCCCAAACAAAGAGCTGAAGCGGCGGTTGGAAACTTACTATGGGGTGGACGATGAGGCAGAACTACCATCTGTCACAGAGGCTGTTCTTGAGCGGAAGCTTGCGGATGTGCACAGCGAGACGGACGATGAACTTATCGAGGAGCTGCGCAGCAAACCACTCCCTGAGGTTCGTGACAGGGATTTTGAGTCCGACTTTGAGGAGATGCACGATACTGATGAGGAGCTGGACAACTTGTACAACGCCAGACAGTATGTGGAGAAAAAGATCAAGAGTGACGAGTTCTTTAATATGGATGACGACAAGTGGAATAAGATGATCAAGAAGGCTGTGGATAATGGCCACCTCGGTAATATGAACGAATGTGAGAATATTTTGGAGGACATGCTCCACTGGGACAAACTATTACCTGATGAAATTAAAAAGAAGGTGGAGGCCAAATTTAATGAGTTGGGGGACATGTGTGAGAAGGGAGAGCTTGAACCTGAGCAGGCTTATGAATTATTCAAAGAGTTTGAGGATAAGATGGTTTCAGAGTGCACAGAACTAATGGAAGCTGAGAACCCAACTGACGTGGATGAATTTTCTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AA750662             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTATTCAAAGAGTTTGAGGATAAGATGGTTTCAGAGTGCACAGAACTAATGGAAGCTGAGAACCCAACTGACGTGGATGAATTTTCTAAAATGGAAAATAAGAGTGTTAAGTTGGACGATCCACCTGGTGAGGGACCTGTTCTAAGGTTGGAGTCACGTATTGTCTTTGCTCCTGGAGGTGATGCATGGCAT CCAAAAACAGGAAAGTTAAACTCAGTGTGACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU029915             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GAGTGCACAGAACTAATGGAAGCTGAGAACCCAACTGACGTGGATGAATTTTCTAAAATGGAAAATAAGAGTGTTAAGTTGGACGATCCACCTGGTGAGGGACCTGTTCTAAGGTGGGAGTCACGTATTGTCTTTGCTCCTGGAGGTGATGCATGGCATCCCAAAAACAGGAAAGTTAAACTCAGTGTGACTGTCAAAGAGCTGGGACTTTCACGACATGCCTTCCGACGTTTA CGTGAGGTTGTTGGGAATAGGTA CAATTCTGGAAAAGATGAACTCACAATAACTAGTGAAAGGTTTGAGCATCGGGGAAGAGAACAGGAAAGATTGCTTGA GG  NATTGTATGCTGGTAGTAGAAGATGC  AACAAGGCCAATAA GTT GGCTGATGATGCTAG AA TGCnt                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL C29077               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CAGAACTAATGGAAGCTGAGAACCCAACTGACGTGGATGAATTTNCTAAAATGGAAAATAAGAGTGTTAAGTTGGACGATCCACCTGGTGAGGGACCTGTTCTAAGGTGGGAGTCACGTATTGTCTTTNCTCCTGGAGGTGATGCATGGCATCCCAAAAACAGGAAAGTTAAACTCAGTGTGACTGTCAAAGAGCTGGGACTTTCACGACATGCCTTCCGACGTTTA CGTGAGGTTGTTGGGAATAGGTA CAATTCTGGAAANGATGAACTCACAATAACTAGTGAAAGGTTTGAGCATC GGGAAGAGAACAGGAAAGATTGCTTTAGGGN CATTTTATGCT GTAGTAG AGATGC AACCAAGNCC ATAAGGTT NGCTGATGATGCTA                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BI796999             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CACGACAT CCTTCCGACGTTTACCGTGA GTTTTGGGGAATAGGTACCCATTCTGGAAAAGATGAACTCAC ATAACTAGTGAAAGGTTTGAGCATC GGGAAGAGAACAGGAAAGATTGCTTGA GGA CATTGTATGCT GTAGTAGAAGAT C CAACCAGGCCCATAA GTT GGCTGATGATGCTAGAAA TGCATAT GTT CAAAACA GACTTAAGG CC ATG CT CAATT CAT GGAAA GGTTGAAGG TGAAGACACAGAAATTGA GGGTAGCTGCATAA GGGGCTCCT GGAGCTACACGCTCTGGAAC ATTCCTC TTTCATGATATCAGTACGGTCATTTTGCAACAAAGGATGCGGCAGTGAGACGTAGAACGGGAGC AAAATGTTTTGTTGTAATTTACATGTGTTGCCTTGTTTGGACGGCCTGTTAGGTTTATCTTTAGCTGAAGCTACACTTTTTGAATTTACCGTGACCGAGCAGGCCTGTTTACATGATCGCATAGTGAACTGGCTGTATCCTGATCTTCTCTAC AATAAC AATTGCTTCTGAAAAAAAA     ]
[-] EMBL CF296838             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CGACATGCCTTCCGACGTTTA CGTGAGGTTGTTGGGAATAGGTA CAATTCTGGAAAAGATGAACTCACAATAACTAGTGAAAGGTTTGAGCATC GGGAAGAGAACAGGAAAGATTGCTTGA GGA CATTGTATGCT GTAGTAGAAGATGC AAACAAGGCCAATAA GTT GGCTGATGATGCTAGAAA TGCATAT GTT AAAAACA GACTTAAGG CCAATG CT CAATT CAT GGAAA GGTTGAAGG TGAAGACACAGAAATTGA GGGTAGCTGCATAA GGGGCTCCT GGAGCTACACGCTTTGGAACAATTCCTC TTTCATGATATCAGTACGGTCATTTTGCAACAAAGGATGCGGCAGTGAGACGTAGAACGGGAGCAAAAATGTTTTGTTGTAATTTACATGTGTTGCCTTGTTTGGACGGCCTGTTAGGTTTATCTTTAGCTGAAGCTACACTTTTTGAATTTACCGTGACCGAGCAGGCCTGTTTACATGATCGCATAGTGAACTGGCTGTATCCTGATCTTCTCTACAAATAACAAATTGCTTTTGAAAAAAA      ]
[+] EMBL AU095018             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GA GGACCATTGTATGCTGGTAGTAGAAGATGC AAACAAGCCCAATAA GTTGGGCTGATGATGCTAGAAATTGCATATGGTTAAAAAACAGGACTTAAGGCCCAATGCCTCCAATTCCATGGGAAAGGGTTGAAGGTTGAAGACACAGAAATTGAGGGGTAGCTGCATAAGGGGGCTCCTGGGAGCTACACGCTCTGGAACAATCCCTCTTTTCATGATATCAGTACGGTCATTTTGCAACAAAGGATGCGGCAGTGAGACGTAGAACGGGAGCAAAAATGTTTTGTTGTAATTTACATGTGTTGCCTTGTTTGGACGGCCTGTTAGGTTTATCTTTAGCTGAAGCTACACTTTTTGAATTTACCGTGACCGAGCAGGCCTGTTTACATGATCGCATAGTGAACTGGCTGTATCCTGATCTTCTCTACAAATAACAAATTGCTTCTGAAAACTCAAAAAA]
[+] EMBL AU172382             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GTATGCT GTAGTAGAAAATGCAAAACAAGGCCAATAA GTT GGCTGATGATGCTAGAAA TGCATAT GTT AAAAACA GACTTAAGG CCAATG CT CNATT CAT GGAAA GGTTGAAGG TGAAGACCCAGAAATTGA GGGTAGCTGCATAA NGGGCTCCT GGAGCTACACGCTNTGGAACAATTCCTC TTTCATGATATCAGTACGGTCATTTTGCAACAAAGGATGCGGCAGTNAGACGTAGAACGGGAGCAAAAATGTTTTGTTGTAATTTACATGTGTTGCCTTGTTTGGACGGCCTGTTAGGTTTATCTTTAGCTGAAGCTACNCTTTTTGAATTTACCGTGACCGAGCAGGCCTGTTTACATGATCGCATAGTGAACTGGCTGTATCCTGATNTTCTCTACAAATAACAAATTGCTTTTGAAAAAAAAAAAA ]


>consensus_13529#0 TCCTCGTGTCCAATTGACGACCCGGCCCAGCTTCATCTGGTAAGTGGTAACCCTAAACCC CCTTCCTCTCTTCCGGCGCCTGGGCGCTCTTCCCCCCTCTTCCCCGCCGCAATGAGGCGC TTGGTGACGCACCTCCACCGCCTCTCCCACCGCGCCATCCCTTCCCCGCCTCCATCTCGA CCCCCAACCACCACTAGCCTCCCCTTCCTCCTCTCCCGCCGCCTCCTCTCCGACGACGCC GCGCCTCCGCCCGCCGCCGACGTCCCAAACAAAGAGCTGAAGCGGCGGTTGGAAACTTAC TATGGGGTGGACGATGAGGCAGAACTACCATCTGTCACAGAGGCTGTTCTTGAGCGGAAG CTTGCGGATGTGCACAGCGAGACGGACGATGAACTTATCGAGGAGCTGCGCAGCAAACCA CTCCCTGAGGTTCGTGACAGGGATTTTGAGTCCGACTTTGAGGAGATGCACGATACTGAT GAGGAGCTGGACAACTTGTACAACGCCAGACAGTATGTGGAGAAAAAGATCAAGAGTGAC GAGTTCTTTAATATGGATGACGACAAGTGGAATAAGATGATCAAGAAGGCTGTGGATAAT GGCCACCTCGGTAATATGAACGAATGTGAGAATATTTTGGAGGACATGCTCCACTGGGAC AAACTATTACCTGATGAAATTAAAAAGAAGGTGGAGGCCAAATTTAATGAGTTGGGGGAC ATGTGTGAGAAGGGAGAGCTTGAACCTGAGCAGGCTTATGAATTATTCAAAGAGTTTGAG GATAAGATGGTTTCAGAGTGCACAGAACTAATGGAAGCTGAGAACCCAACTGACGTGGAT GAATTTTCTAAAATGGAAAATAAGAGTGTTAAGTTGGACGATCCACCTGGTGAGGGACCT GTTCTAAGGTGGGAGTCACGTATTGTCTTTGCTCCTGGAGGTGATGCATGGCATCCCAAA AACAGGAAAGTTAAACTCAGTGTGACTGTCAAAGAGCTGGGACTTTCACGACATGCCTTC CGACGTTTACGTGAGGTTGTTGGGAATAGGTACAATTCTGGAAAAGATGAACTCACAATA ACTAGTGAAAGGTTTGAGCATCGGGAAGAGAACAGGAAAGATTGCTTGAGGACATTGTAT GCTGTAGTAGAAGATGCAAACAAGGCCAATAAGTTGGCTGATGATGCTAGAAATGCATAT GTTAAAAACAGACTTAAGGCCAATGCTCAATTCATGGAAAGGTTGAAGGTGAAGACACAG AAATTGAGGGTAGCTGCATAAGGGGCTCCTGGAGCTACACGCTCTGGAACAATTCCTCTT TCATGATATCAGTACGGTCATTTTGCAACAAAGGATGCGGCAGTGAGACGTAGAACGGGA GCAAAAATGTTTTGTTGTAATTTACATGTGTTGCCTTGTTTGGACGGCCTGTTAGGTTTA TCTTTAGCTGAAGCTACACTTTTTGAATTTACCGTGACCGAGCAGGCCTGTTTACATGAT CGCATAGTGAACTGGCTGTATCCTGATCTTCTCTACAAATAACAAATTGCTTCTGAAAAA AAAAAAAA



consensusID : consensus_13529#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence
                              [CAGAGTGCNCAGAACTAATGGNGCCTGAGACCCNACTGACGTGGATGAATTTTCTAAAATGGAANATAAGAGTGTTAAGTTGGACGATCCACCTGGTGAGGGACCTGTTCTAAGTTGGGAGTCACGTATTGTCTTTGCTCCTGGAGGTGATGCATGGCATCCCAAAAACAGGAAAGTTAAACTCAGTGTGACTNTCAAAGAGCTGGGACTTTCACGACATGCCTTCCGACGTTTACGTGAGGTTGTTGGGAATAGGTACAATTCTGGAAAAGATGAACTCACAATAACTAGTGAAAGGTTTGAGCATCGGGAAGAGAACAGGAAAGATTGCTTGAGGACATTGTATGCTGTAGTAGAAGATGCAAACAAGGCCAATAAGTTGGCTGATGATGCTAGAAATGCATATGTTAAAAACAGACTTAAGGCCAATGCTCAATTCATGGAAAGGTTGAAGGTGAAGACACAGAAATTGAGGGTAGCTGCATAAGGGGCTCCTGGAGCTACACGCTCTGGAACAATTCCTCTTTCATGATATCAGTACGGTCATTTTGCAACAAAGGATGCGGCAGTGAGACGTAGAACGGGAGCAAAAATGTTTTGTTGTAATTTACATGTGTTGCCTTGTTTGGACGGCCTGTTAGGTTTATCTTTAGCTGAAGCTACACTTTTTGAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU032717             [CAGAGTGCNCAGAACTAATGGNGCCTGAGACCCNACTGACGTGGATGAATTTTCTAAAATGGAANATAAGAGTGTTAAGTTGGACGATCCACCTGGTGAGGGACCTGTTCTAAGTTGGGAGTCACGTATTGTCTTTGCTCCTGGAGGTGATGCATGGCATCCCAAAAACAGGAAAGTTAAACTCAGTGTGACTNTCAAAGAGCTGGGACTTTCACGACATGCCTTCCGACGTTTACGTGAGGTTGTTGGGAATAGGTACAATTCTGGAAAAGATGAACTCACAATAACTAGTGAAAGGTTTGAGCATCGGGAAGAGAACAGGAAAGATTGCTTGAGGACATTGTATGCTGTAGTAGAAGATGCAAACAAGGCCAATAAGTTGGCTGATGATGCTAGAAATGCATATGTTAAAAACAGACTTAAGGCCAATGCTCAATTCATGGAAAGGTTGAAGGTGAAGACACAGAAATTGAGGGTAGCTGCATAAGGGGCTCCTGGAGCTACACGCTCTGGAACAATTCCTCTTTCATGATATCAGTACGGTCATTTTGCAACAAAGGATGCGGCAGTGAGACGTAGAACGGGAGCAAAAATGTTTTGTTGTAATTTACATGTGTTGCCTTGTTTGGACGGCCTGTTAGGTTTATCTTTAGCTGAAGCTACACTTTTTGAAAAAAAAAAAAAAAAAAAAA]


>consensus_13529#1 CAGAGTGCNCAGAACTAATGGNGCCTGAGACCCNACTGACGTGGATGAATTTTCTAAAAT GGAANATAAGAGTGTTAAGTTGGACGATCCACCTGGTGAGGGACCTGTTCTAAGTTGGGA GTCACGTATTGTCTTTGCTCCTGGAGGTGATGCATGGCATCCCAAAAACAGGAAAGTTAA ACTCAGTGTGACTNTCAAAGAGCTGGGACTTTCACGACATGCCTTCCGACGTTTACGTGA GGTTGTTGGGAATAGGTACAATTCTGGAAAAGATGAACTCACAATAACTAGTGAAAGGTT TGAGCATCGGGAAGAGAACAGGAAAGATTGCTTGAGGACATTGTATGCTGTAGTAGAAGA TGCAAACAAGGCCAATAAGTTGGCTGATGATGCTAGAAATGCATATGTTAAAAACAGACT TAAGGCCAATGCTCAATTCATGGAAAGGTTGAAGGTGAAGACACAGAAATTGAGGGTAGC TGCATAAGGGGCTCCTGGAGCTACACGCTCTGGAACAATTCCTCTTTCATGATATCAGTA CGGTCATTTTGCAACAAAGGATGCGGCAGTGAGACGTAGAACGGGAGCAAAAATGTTTTG TTGTAATTTACATGTGTTGCCTTGTTTGGACGGCCTGTTAGGTTTATCTTTAGCTGAAGC TACACTTTTTGAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13529#0      TCCTCGTGTCCAATTGACGACCCGGCCCAGCTTCATCTGGTAAGTGGTAACCCTAAACCC 60
consensus_13529#1      ------------------------------------------------------------
                                                                                   

consensus_13529#0      CCTTCCTCTCTTCCGGCGCCTGGGCGCTCTTCCCCCCTCTTCCCCGCCGCAATGAGGCGC 120
consensus_13529#1      ------------------------------------------------------------
                                                                                   

consensus_13529#0      TTGGTGACGCACCTCCACCGCCTCTCCCACCGCGCCATCCCTTCCCCGCCTCCATCTCGA 180
consensus_13529#1      ------------------------------------------------------------
                                                                                   

consensus_13529#0      CCCCCAACCACCACTAGCCTCCCCTTCCTCCTCTCCCGCCGCCTCCTCTCCGACGACGCC 240
consensus_13529#1      ------------------------------------------------------------
                                                                                   

consensus_13529#0      GCGCCTCCGCCCGCCGCCGACGTCCCAAACAAAGAGCTGAAGCGGCGGTTGGAAACTTAC 300
consensus_13529#1      ------------------------------------------------------------
                                                                                   

consensus_13529#0      TATGGGGTGGACGATGAGGCAGAACTACCATCTGTCACAGAGGCTGTTCTTGAGCGGAAG 360
consensus_13529#1      ------------------------------------------------------------
                                                                                   

consensus_13529#0      CTTGCGGATGTGCACAGCGAGACGGACGATGAACTTATCGAGGAGCTGCGCAGCAAACCA 420
consensus_13529#1      ------------------------------------------------------------
                                                                                   

consensus_13529#0      CTCCCTGAGGTTCGTGACAGGGATTTTGAGTCCGACTTTGAGGAGATGCACGATACTGAT 480
consensus_13529#1      ------------------------------------------------------------
                                                                                   

consensus_13529#0      GAGGAGCTGGACAACTTGTACAACGCCAGACAGTATGTGGAGAAAAAGATCAAGAGTGAC 540
consensus_13529#1      ------------------------------------------------------------
                                                                                   

consensus_13529#0      GAGTTCTTTAATATGGATGACGACAAGTGGAATAAGATGATCAAGAAGGCTGTGGATAAT 600
consensus_13529#1      ------------------------------------------------------------
                                                                                   

consensus_13529#0      GGCCACCTCGGTAATATGAACGAATGTGAGAATATTTTGGAGGACATGCTCCACTGGGAC 660
consensus_13529#1      ------------------------------------------------------------
                                                                                   

consensus_13529#0      AAACTATTACCTGATGAAATTAAAAAGAAGGTGGAGGCCAAATTTAATGAGTTGGGGGAC 720
consensus_13529#1      ------------------------------------------------------------
                                                                                   

consensus_13529#0      ATGTGTGAGAAGGGAGAGCTTGAACCTGAGCAGGCTTATGAATTATTCAAAGAGTTTGAG 780
consensus_13529#1      ------------------------------------------------------------
                                                                                   

consensus_13529#0      GATAAGATGGTTTCAGAGTGCACAGAACTAATGGAAGCTGAGAACCCAACTGACGTGGAT 840
consensus_13529#1      -------------CAGAGTGCNCAGAACTAATGGNGCCTGAGA-CCCNACTGACGTGGAT 46
                                    ******** ************   ****** *** ************

consensus_13529#0      GAATTTTCTAAAATGGAAAATAAGAGTGTTAAGTTGGACGATCCACCTGGTGAGGGACCT 900
consensus_13529#1      GAATTTTCTAAAATGGAANATAAGAGTGTTAAGTTGGACGATCCACCTGGTGAGGGACCT 106
                       ****************** *****************************************

consensus_13529#0      GTTCTAAGGTGGGAGTCACGTATTGTCTTTGCTCCTGGAGGTGATGCATGGCATCCCAAA 960
consensus_13529#1      GTTCTAAGTTGGGAGTCACGTATTGTCTTTGCTCCTGGAGGTGATGCATGGCATCCCAAA 166
                       ******** ***************************************************

consensus_13529#0      AACAGGAAAGTTAAACTCAGTGTGACTGTCAAAGAGCTGGGACTTTCACGACATGCCTTC 1020
consensus_13529#1      AACAGGAAAGTTAAACTCAGTGTGACTNTCAAAGAGCTGGGACTTTCACGACATGCCTTC 226
                       *************************** ********************************

consensus_13529#0      CGACGTTTACGTGAGGTTGTTGGGAATAGGTACAATTCTGGAAAAGATGAACTCACAATA 1080
consensus_13529#1      CGACGTTTACGTGAGGTTGTTGGGAATAGGTACAATTCTGGAAAAGATGAACTCACAATA 286
                       ************************************************************

consensus_13529#0      ACTAGTGAAAGGTTTGAGCATCGGGAAGAGAACAGGAAAGATTGCTTGAGGACATTGTAT 1140
consensus_13529#1      ACTAGTGAAAGGTTTGAGCATCGGGAAGAGAACAGGAAAGATTGCTTGAGGACATTGTAT 346
                       ************************************************************

consensus_13529#0      GCTGTAGTAGAAGATGCAAACAAGGCCAATAAGTTGGCTGATGATGCTAGAAATGCATAT 1200
consensus_13529#1      GCTGTAGTAGAAGATGCAAACAAGGCCAATAAGTTGGCTGATGATGCTAGAAATGCATAT 406
                       ************************************************************

consensus_13529#0      GTTAAAAACAGACTTAAGGCCAATGCTCAATTCATGGAAAGGTTGAAGGTGAAGACACAG 1260
consensus_13529#1      GTTAAAAACAGACTTAAGGCCAATGCTCAATTCATGGAAAGGTTGAAGGTGAAGACACAG 466
                       ************************************************************

consensus_13529#0      AAATTGAGGGTAGCTGCATAAGGGGCTCCTGGAGCTACACGCTCTGGAACAATTCCTCTT 1320
consensus_13529#1      AAATTGAGGGTAGCTGCATAAGGGGCTCCTGGAGCTACACGCTCTGGAACAATTCCTCTT 526
                       ************************************************************

consensus_13529#0      TCATGATATCAGTACGGTCATTTTGCAACAAAGGATGCGGCAGTGAGACGTAGAACGGGA 1380
consensus_13529#1      TCATGATATCAGTACGGTCATTTTGCAACAAAGGATGCGGCAGTGAGACGTAGAACGGGA 586
                       ************************************************************

consensus_13529#0      GCAAAAATGTTTTGTTGTAATTTACATGTGTTGCCTTGTTTGGACGGCCTGTTAGGTTTA 1440
consensus_13529#1      GCAAAAATGTTTTGTTGTAATTTACATGTGTTGCCTTGTTTGGACGGCCTGTTAGGTTTA 646
                       ************************************************************

consensus_13529#0      TCTTTAGCTGAAGCTACACTTTTTGAATTTACCGTGACCGAGCAGGCCTGTTTACATGAT 1500
consensus_13529#1      TCTTTAGCTGAAGCTACACTTTTTGAAAAAAAAAAAAAAAAAAAAA-------------- 692
                       ***************************   *     *   *  *                

consensus_13529#0      CGCATAGTGAACTGGCTGTATCCTGATCTTCTCTACAAATAACAAATTGCTTCTGAAAAA 1560
consensus_13529#1      ------------------------------------------------------------
                                                                                   

consensus_13529#0      AAAAAAAA 1568
consensus_13529#1      --------
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)