These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13545#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 2233 fasta sequence [GTAGTCTTCTCTTCTTCCACGCGCAGGCGCAGCCATCGTCGTCATCGCCATCGCCGCCGCGGCGCGCGCGCGCGCGCCCGTGACTGACTTCCGTAGGGGGGGACTGAGGCACGCCACCCCGCGCGCGCGCGCGCGCGCGTGCGGCCGCACAACCACGAACGCGCTCCGAAGTCTTCCTTCCGGGAGGGCACGTGTGGTTGGGGTATAAAGGGGGAGAGAGGCACGATGCCGCACGGCGTCGCGCTCGTCGTCGTCGTCGTCGTCGCTCCTGGCCGGTAGCGGATGGGCGTCGTGGTGGGGTTGCAGCTTGCTCGCCTCGCCCTCGCCCTCGCCGTCGCCGTCGCCCCCGGGTTGCTCAGCTTCTCCGCCGCCGCCACCGCAGCCTGAAGCGCGCGGGCGTCGAAACGAGGATGAGGGAGTACGGGCCCGCGGCGGCGCCGCGGCTGCTGGTGTCCGACTCCGGCCGCGTCCATGAGATGGAGAGGTTCTCGCATTACGTCGCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCCCCCACCTATGTACGCTGGCCTATGATTATCTGAGGAAGAACAAGGGTTACGAAGAAAACATATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAGGAACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGAACTATGCAACCTATATAATTTCCCAGGTTTTGACTGTAGAAGGTGCTCCTAAAAGAAAGCTCAGGAACATGGTATTAGAGGCCACTAGGAAACAGAGATTTGAAAGGGTTACAAGAAACTTGAAGGTGACCAGACTATTCTCCACATTGGTGGAGGAGCTGAAGGCCATAGGACTATCTTCCCATGTTGAAGCACCACGGAGTGATGTGATGGTCCCAGCAGCACATTGTGATCGCAGCCCAGTTCTACTCTTGATGGGTGGTGGGATGGGAGCTGGCAAGAGCACCGTGCTTAAGGATATACTCAAGGAAGCATTCTGGTCCGGAGCAGCTGCAAATGCAGTAGTTGTAGAGGCAGATGCATTCAAGGAAACTGATGTAATCTATCGAGCTATCAGCTCAAGAGGCCACCACAATGACATGCTGCAGACGGCAGAACTGGTACATCAGTCATCGATGGACGCAGCCTCGTCGCTCCTGGTGACTGCCCTCAACGAAGGGAGGGATGTGATCATGGACGGCACCATGTCGTGGGAGCCGTTTGTCCAGCAGACGATCACCATGGCCAGGGCTGTGCACCGGCAACGGTACCGCATGGGTGTTGGCTACAAGGTCACGGAGGACGGGTCAATCACTGAGGAGTACTGGGAGCCAGTTGAGGACTCCAGTACAGATGAAGAAGGCGAGACGAGAAACAGGAAGCCATATCGCATCGAGCTCGTAGGTGTGGTCTGTGATGCCTATCTTGCGGTTGTCAGGGGAATCAGGAGAGCTGTGATCACCGGGAGAGCAGTGAGGGTGAAGTCCCAGCTGAAGTCCCACAAGCGGTTCGCCACCGCGTTCCACAGCTACTGCAACCTCGTCGACAATGCGAGGCTCTACTGCACCAACTCCACGGGCGCCGCCAAGCTGATAGGATGGAAGGACGGCGAGAGCAACCTTCTAGTGGACCCTGAAGAAATCGGCTG-CTTGGAGAGGGTGAGCCACCTCAACGACGAGGCCGACTGCGTCCA-CGAGATCTATCCGGACGGCTCGGCGGCGGCGGCCTGGGAGGCCCTGGTCACGTCGCCGTCGAGGGCG-CCGGCGCA-GCGGGAGATCA-TG-GC-GGCGGTCCAGAGGA-GCGAGGCGCG-CTTCC-GGACCAC-GTCCAC-GCCCTC-GTAGCT-GCAGCACACGATCA-CTCGTGTCAGGT-TGGAATTTTCTTTTCTTTTGACA-CGATTTCAGGTAGGACTGGGGGTATTTGGGTG-TTGGTTGTGTGTGGTGGCTGCCAAATGGCTCGTGGGACA-CAGTTCGTGTTATGTACGTATCATACTGTACATTGTATCAACTGATCCTGACTCCGTTACCA-CCC-GGCATATTGTTTCGTTTTGCCGGGC-GATCGAGCTGCATCGAATGGAGCTCGTCGGAGTCATCGGGCATGTACACATGTGT-CTTGTACGATGTATTCCGGATCTAGA-CA-AGAAACAACACATACTTTTCATGGTCACTTCAGTGAAAGC-CCTGATGAAAAAAACTCAATGAC-CCTTCCCCTCGAAAAAAAAAAA] [+] EMBL AK065638 [GTAGTCTTCTCTTCTTCCACGCGCAGGCGCAGCCATCGTCGTCATCGCCATCGCCGCCGCGGCGCGCGCGCGCGCGCCCGTGACTGACTTCCGTAGGGGGGGACTGAGGCACGCCACCCCGCGCGCGCGCGCGCGCGCGTGCGGCCGCACAACCACGAACGCGCTCCGAAGTCTTCCTTCCGGGAGGGCACGTGTGGTTGGGGTATAAAGGGGGAGAGAGGCACGATGCCGCACGGCGTCGCGCTCGTCGTCGTCGTCGTCGTCGCTCCTGGCCGGTAGCGGATGGGCGTCGTGGTGGGGTTGCAGCTTGCTCGCCTCGCCCTCGCCCTCGCCGTCGCCGTCGCCCCCGGGTTGCTCAGCTTCTCCGCCGCCGCCACCGCAGCCTGAAGCGCGCGGGCGTCGAAACGAGGATGAGGGAGTACGGGCCCGCGGCGGCGCCGCGGCTGCTGGTGTCCGACTCCGGCCGCGTCCATGAGATGGAGAGGTTCTCGCATTACGTCGCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCCCCCACCTATGTACGCTGGCCTATGATTATCTGAGGAAGAACAAGGGTTACGAAGAAAACATATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAGGAACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGAACTATGCAACCTATATAATTTCCCAGGTTTTGACTGTAGAAGGTGCTCCTAAAAGAAAGCTCAGGAACATGGTATTAGAGGCCACTAGGAAACAGAGATTTGAAAGGGTTACAAGAAACTTGAAGGTGACCAGACTATTCTCCACATTGGTGGAGGAGCTGAAGGCCATAGGACTATCTTCCCATGTTGAAGCACCACGGAGTGATGTGATGGTCCCAGCAGCACATTGTGATCGCAGCCCAGTTCTACTCTTGATGGGTGGTGGGATGGGAGCTGGCAAGAGCACCGTGCTTAAGGATATACTCAAGGAAGCATTCTGGTCCGGAGCAGCTGCAAATGCAGTAGTTGTAGAGGCAGATGCATTCAAGGAAACTGATGTAATCTATCGAGCTATCAGCTCAAGAGGCCACCACAATGACATGCTGCAGACGGCAGAACTGGTACATCAGTCATCGATGGACGCAGCCTCGTCGCTCCTGGTGACTGCCCTCAACGAAGGGAGGGATGTGATCATGGACGGCACCATGTCGTGGGAGCCGTTTGTCCAGCAGACGATCACCATGGCCAGGGCTGTGCACCGGCAACGGTACCGCATGGGTGTTGGCTACAAGGTCACGGAGGACGGGTCAATCACTGAGGAGTACTGGGAGCCAGTTGAGGACTCCAGTACAGATGAAGAAGGCGAGACGAGAAACAGGAAGCCATATCGCATCGAGCTCGTAGGTGTGGTCTGTGATGCCTATCTTGCGGTTGTCAGGGGAATCAGGAGAGCTGTGATCACCGGGAGAGCAGTGAGGGTGAAGTCCCAGCTGAAGTCCCACAAGCGGTTCGCCACCGCGTTCCACAGCTACTGCAACCTCGTCGACAATGCGAGGCTCTACTGCACCAACTCCACGGGCGCCGCCAAGCTGATAGGATGGAAGGACGGCGAGAGCAACCTTCTAGTGGACCCTGAAGAAATCGGCTG CTTGGAGAGGGTGAGCCACCTCAACGACGAGGCCGACTGCGTCCA CGAGATCTATCCGGACGGCTCGGCGGCGGCGGCCTGGGAGGCCCTGGTCACGTCGCCGTCGAGGGCG CCGGCGCA GCGGGAGATCA TG GC GGCGGTCCAGAGGA GCGAGGCGCG CTTCC GGACCAC GTCCAC GCCCTC GTAGCT GCAGCACACGATCA CTCGTGTCAGGT TGGAATTTTCTTTTCTTTTGACA CGATTTCAGGTAGGATTGGGGGTATTTGGGTG TTGGTTGTGTGTGGTGGCTGCCAAATGGCTCGTGGGACA CAGTTCGTGTTATGTACGTATCATACTGTACATTGTATCAACTGATCCTGACTCCGTTACCA CCC GGCATATTGTTTCGTTTTGCCGGGC GATCGAGCTGCATCGAATGGAGCTCGTCGGAGTCATCGGTCATGTACACATGTGT CTTGTACGATGTATTCCGGATCTAGA CA AGAAACAACACATACT ] [-] EMBL CB629226 [ AAGAAGGCGAGACGAGAAACAGGAAGCCATATCGCATCGAGCTCGTAGGTGTGGTCTGTGATGCCTATCTTGCGGTTGTCAGGGGAATCAGGAGAGCTGTGATCACCGGGAGAGCAGTGAGGGTGAAGTCCCAGCTGAAGTCCCACAAGCGGTTCGCCACCGCGTTCCACAGCTACTGCAACCTCGTCGACAATGCGAGGCTCTACTGCACCAACTCCACGGGCGCCGCCAAGCTGATAGGATGGAAGGACGGCGAGAGCAACCTTCTAGTGGACCCTGAAGAAATCGGCTG CTTGGAGAGGGTGAGCCACCTCAACGACGAGGCCGACTGCGTCCA CGAGATCTATCCGGACGGCTCGGCGGCGGCGGCCTGGGAGGCCCTGGTCACGTCGCCGTCGAGGGCG CCGGCGCA GCGGGAGATCA TG GC GGCGGTCCAGAGGA GCGAGGCGCG CTTCC GGACCAC GTCCAC GCCCTC GTAGCT GCAGCACACGATCA CTCGTGTCAGGT TGGAATTCTCTTTTCTTTTGACA CGATTTCAGGTAGGACTGGGGGTATTTGGGTG TTGGTTGTGTGTGGTGGCTGCCAAATGGCTCGTGGGACA CAGTTCGTGTTATGTACGTATCATACTGTACATTGTATCAACTGATCCTGACTCCGTTACCA CCC GGCATATTGTTTCGTTTTGCCGGGC GATCGAGCTGCATCGAATGGAGCTCGTCGGAGTCATCGGGCATGTACACATGTGT CTTGTACGATGTATTCCGGATCTAGA CA AGAAACAACACATACTT ] [-] EMBL CB679116 [ CAGGAGAGCTGTGATCACCGGACGAGCAGTGAGGGTGAAGTCCCAGCTGAAGTCCCACAAGCGGTTCGCCACCGCGTTCCACAGGTACTGCACCCTCGTCGACAATGCGAGGCTGTACTGCACCAACTCCACGGGCGCCGCCAAGCTGATAGGATGGAAGGACGGCGAGAGCAACCTTCTAGTGGACCCTGAAGAAATCGGCTG CTTGGAGAGGGTGAGCCACCTCATCGACGAGGCCGACTGCGTCCA CGAGATCTATCCGGACGGTTCGGCGGCGGCGGCCTGGGAGGCCCTGGTCCCGTCGCCGTCGAGGGCG CCGGCGCA GCGGGAGATCA TG GC GGCGGTCCAGAGGA GCGAGGCGCG CTTCC GGACCAC GTCCAC GCCCTC GTAGCT GCAGCACACGATCA CTCGTGTCAGGT CGGAATTTTCTTTTCTTTTGACA CGATTTCAGGTAGGATTGGGGGTATTTGGGTG TTGGTTGTGTGTGGTGGCTGCCAAATGGCTCGTGGGCCA CAGTTCGTGTTATGTACGTATCATACTGTACATTGTATCAAATGATCCTGACTCCGTTACCA CCC GGCATATTGTTTCGTTTTCCCGGGC GATCGAGCTGCATCGAATGGAGCTCGTCGGAGTCATCGGTCATGTACACATGTGT CTTGTACGATGTATTAAGGGTC ] [-] EMBL CB683184 [ CACGGGCGCCGCCAAGCTGATAGGATGGAAGGACGGCGAGAGCAACCTTTTAGTGGACCCTGAAGAAATCGGCTG CTTGGAGAGGGTGAGCCACCTCAACGACGAGGCCGACTGCGTCCA CGAGATTTATCCGGACGGCTTGGCGGCGGCGGCCTGGGAGGCCCTGGTCACGTCGCCGTTGAGGGCG CCGGCGCA GCGGGAGATCA TG GC GGCGGTCCAGAGGA GCGAGGCGCG CTTCC GGACCAC GTCCAC GCCCTT GTAGGT GCAGCACACGATCA CTCGTGTCAGGT TGGAATTTTTTTTTCTTTTGACA CGATTTCAGGTAGGATTGGGGGTATTTGGGTG TTGGTTGTGTGTGGTGGCTGCCAAATGGCTCGTGGGACA CAGTTCGTGTTATGTACGTATCATACTGTACATTGTATCAACTGATCCTGACTCCGTTACCC CCC GGCATATTGTTTTGTTTTGCCGGGC GATCGAGCTGCATTGAATGGAGCTCGTCGGAGTCATCGGTCATGTACACATGTGT TTTGTACGATGTATTCCGGATTTAGA CA AGAAACAACCCATACTTTTCATGGTCCCTTCAaaggaa ] [+] EMBL BQ908746 [ CGGCGAGAGCAACCTTCTAGTGGACCCTGAAGAAATCGGCTG CTTGGAGAGGGTGAGCCNCCTCAACGACGAGGCCGACTGCGTCCACCGAGATCTATCCGGACGGCTCGGCGGCGGCGGCCTGGGAGGCCCTGGTCACGTC CCGTCGAGGGCG CCGGCGCA CCGGGAGATCA TG GC GGCGGTCCAGAGGA GCGAGGCGCG CTTCC GGACCAC GTCCAC GCCCTC GTAGCT GCAGCACACGATCA CTCGTGTCAGGTGTGGAATTTTCTTTTCTTTTGACA CGATTTCAGGTAGGACTGGGGGTATTTGGGTG TTGGTTGTGTGTGGTGGCTGCCCAATGGCTCGTGGGACA CNGTTCGTGTTATGTACGTATCATACTGTACNTTGTATCAACTGATCCTGACTCCGTTACCC CCC GGCATATTGTTTCGTTTTGCCGGGC GATCGAGCTGCATCGAATGGAGCTCGTCGGAGTCATCGGGCATGTACACATGTGTCCTTGTACGATGTATTCCGGATCTAGA CA AGAAACAACACATACTTTTCATGGTCAaaaa ] [+] EMBL BM419143 [ AAATCGCCTGCCTTGGAGAGGGTGA CCACCTCAACGACGA GCCGACTGCGTCCA CGAGATCTATCCGGACGGCTCGGC GCGGCGGCCTGGGAGGCCCTGGTCACGTCGCCGTCGAGGGCG CCGGCGCA GCGGGAGATCA TG GC GGCGGTCCAGAGGA GCGAGGCGCG CTTCC GGACCAC GTCCAC GCCCTC GTAGCT GCAGCACACGATCA CTCGTGTCAGGT TGGAATTTTCTTTTCTTTTGACA CGATTTCAGGTAGGACTGGGGGTATTTGGGTG TTGGTTGTGTGTGGTGGCTGCCAAATGGCTCGTGGGACA CAGTTCGTGTTATGTACGTATCATACTGTACCTTGTATCAACTGATCCTGACTCCGTTACCA CCC GGCATATTGTTTCGTTTTGCCGGGC GATCGAGCTGCATCGAATGGAGCTCGTCGGAGTCATCGGGCATGTACACATGTGT CTTGTACGATGTATTCCGGATCTAGACCA AGAAACAACCCATACTTTTCATGGTCAaaaaaaaaa ] [+] EMBL BM419970 [ TCACGTCGCCGTCGAGGGCGTCCGGCGCA GCGGGAGATCA TG GCTGGCGGTCCAGAGGATGCGAGGCGCG CTTCCAGGACCAC GTCCACAGCCCTC GTAGCT GCAGCACACGATCA CTCGTGTCAGGT TGGAATTTTCTTTTCTTTTGACA CGATTTCAGGTAGGACTGGGGGTATTTGGGTGNTTGGTTGTGTGTGGTGGCTGCCAAATGGCTCGTGGGACA CAGTTCGTGTTATGTACGTATCATACTGTACATTGTATCAACTGATCCTGACTCCGTTACCA CCCTGGCATATTGTTTCGTTTTGCCGGGCAGATCGAGCTGCATCGAATGGAGCTCGTCGGAGTCATCGGGCATGTACACATGTGT CTTGTACGATGTATTCCGGATCTAGA CA AGAAACAACACATACTTTTCATGGTCACTTCAGTGAAAGCACCTGATGAAAAAAACTCAAa ] [+] EMBL BM038592 [ CGA GGCC CCGGCNCA CGGGAGATCAGTG GC GCCGGTCCAGAGGA CGAGGCGCGTCTTCC GGACCACTGTCCAC GCCCTCTGTAGCTNNCAGCACNCGATCA CTCGTGTCAGGT TGGAATTTTCTTTTC TTTGACACCGATTTCAGGTAGGACTGGGGGTATTT GGTG TTGGTTGTGTGTGGTGTCTGCCCAATGGCTCGTGGGACN CAGTTCGTGTTATGTACGTATCATACTGTACATTGTATCAACTGATCCTGACTCCGTTACCACCCC GGCATATTGTTTCGTTTTGCCGGGC GATCGAGCTGCATCGAATGGAGCTCGTCGGAGTCATCGGGCATGTACACATGTGT CTTGTACGATGTATTCCGGATCTAGA CACAG AACCACACATACTTTTCATGGTCACTTCAGTGAAA C CCTGATGAAAAAAACTCAATGACACCTTCCCCTCGAAAAAAAAAAA] [+] EMBL BM038626 [ c aCGGCTCANNCGGGAGATCA TGTGC GGCGGTCCAGAGGA GCGAGGCGCG CTTCC GGACCAC GTCCAC GCCCTC GTAGCT GCAGCACACGATCANCTCGTGTCAGGT TGGAATTTTCTTTTCTTTTGACN CGATTTCAGGTAGGACTGGGGGTATTTGGGTG TTGGTTGTGTGTGGTGGCTGCCCAATGGCTCGTGGGACACCAGTTCGTGTTATGTACGTATCATACTGTACATTGTATCAACTGATCCTGACTCCGTTACCACCCC GGCATATTGTTTCGTTTTGCCGGGC GATCGAGCTGCATCGAATGGAGCTCGTCGGAGTCATCGGGCATGTACACATGTGT CTTGTACGATGTATTCCGGATCTAGA CA AGAAACAACACATACTTTTCATGGTCACTTCAGTGAAAGC NCTGATGAAAAAAACTCAATGAC NCTTCCCNTCGAAAAAAAAAA ] consensusID : consensus_13545#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [GCCATCGCCGCCGCGGCGCGCGCGCGCGCGCCCGTGACTGACTTCCGTAGGGGGGGACTTCAACTGAGGCACGCCACCCCGCGCGCGCGTGCGGCCGCACAGCCACGAACGCGCTCCGAAGTCTTCCTTCCGGGAGGGCACGTGTGGTTGGGGTATAAAGGGGGAGAGAGGCACGATGCCGCACGGCGTCGCGCTCGTCGTCGTCGTCGTCGTCGCTCCTGGCCGGTAGCGGATGGGCGTCGTGGTGGGGTTGCAGCTTGCTCGCCTCGCCCTCGCCCTCGCCCTCGCCCTCGCCGTCGCCGTCGCCGTCGCCCCCGGGTTGCTCAGCTTCTCCGCCGCCGCCACCGCAGCCTGAAGCGCGCGGGCGTCGAAACGAGGATGAGGGAGTACGGGCCCGCGGCGGCGCCGCGGCTGCTGGTGTCCGACTCCGGCCGCGTCCATGAGATGGAGAGGTTCTCGCATTACGTCGCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCCCCCACCTATGTACGCTGGCCTATGATTATCTGAGGAAGAACAAGGGTTACGAAGAAAACATATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAGGAACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGGACTATGCAACCT] [+] EMBL CB629225 [GCCATCGCCGCCGCGGCGCGCGCGCGCGCGCCCGTGACTGACTTCCGTAGGGGGGGACTTCAACTGAGGCACGCCACCCCGCGCGCGCGTGCGGCCGCACAGCCACGAACGCGCTCCGAAGTCTTCCTTCCGGGAGGGCACGTGTGGTTGGGGTATAAAGGGGGAGAGAGGCACGATGCCGCACGGCGTCGCGCTCGTCGTCGTCGTCGTCGTCGCTCCTGGCCGGTAGCGGATGGGCGTCGTGGTGGGGTTGCAGCTTGCTCGCCTCGCCCTCGCCCTCGCCCTCGCCCTCGCCGTCGCCGTCGCCGTCGCCCCCGGGTTGCTCAGCTTCTCCGCCGCCGCCACCGCAGCCTGAAGCGCGCGGGCGTCGAAACGAGGATGAGGGAGTACGGGCCCGCGGCGGCGCCGCGGCTGCTGGTGTCCGACTCCGGCCGCGTCCATGAGATGGAGAGGTTCTCGCATTACGTCGCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCCCCCACCTATGTACGCTGGCCTATGATTATCTGAGGAAGAACAAGGGTTACGAAGAAAACATATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAGGAACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGGACTATGCAACCT] consensusID : consensus_13545#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence [GTCCCCTTTACTCCTGGCCGGTAGCGGATGGGCGTCGTGGTGGGGTTGCAGCTTGCTCGCCTCGCCCTCGCCCTCGCCGTCGCCGTCGCCCCCGGGTTGCTCAGCTTCTCCGCCGCCGCCACCGCAGCCTGAAGCGCGCGGGCGTCGAAACGAGGATGAGGGAGTACGGGCCCGCGGCGGCGCCGCGGCTGCTGGTGTCCGACTCCGGCCGCGTCCATGAGATGGAGAGGTTCTCGCATTACGTCGCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCCCCCACCTATGTACGCTGGCCTATGATTATCTGAGGAAGAACAAGGGTTACGAAGAAAACATATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAGGAACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGAACTATGCAACCTATATAATTTCCCAGGTTTTGACTGTAGAAGGTGCTCCTAAAAGAAAGCTCAGGAACATGGTATTAGAGGCCACTACGAAACAGAGATTTGAAAGGGTTACAAGAAACTTGAAGGTGACCAGACTATTCTCCACATTGGTGGAGGAGCTGAAGGCCATAGGACTATCTTCCCATGTTGAAGCACCACGGAGTGA] [+] EMBL CB676604 [GTCCCCTTTACTCCTGGCCGGTAGCGGATGGGCGTCGTGGTGGGGTTGCAGCTTGCTCGCCTCGCCCTCGCCCTCGCCGTCGCCGTCGCCCCCGGGTTGCTCAGCTTCTCCGCCGCCGCCACCGCAGCCTGAAGCGCGCGGGCGTCGAAACGAGGATGAGGGAGTACGGGCCCGCGGCGGCGCCGCGGCTGCTGGTGTCCGACTCCGGCCGCGTCCATGAGATGGAGAGGTTCTCGCATTACGTCGCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCCCCCACCTATGTACGCTGGCCTATGATTATCTGAGGAAGAACAAGGGTTACGAAGAAAACATATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAGGAACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGAACTATGCAACCTATATAATTTCCCAGGTTTTGACTGTAGAAGGTGCTCCTAAAAGAAAGCTCAGGAACATGGTATTAGAGGCCACTACGAAACAGAGATTTGAAAGGGTTACAAGAAACTTGAAGGTGACCAGACTATTCTCCACATTGGTGGAGGAGCTGAAGGCCATAGGACTATCTTCCCATGTTGAAGCACCACGGAGTGA] consensusID : consensus_13545#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [TTGGGAGGGGATAGAATGTTCNAGGGGTGGAATGTGTGATTTATGTTTTTTCACCTTGTCTTCTTTGTCGATTTCCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCCCCCACCTATGTACGCTGGCCTATGATTATCTGAGGAAGAACAAGGGTTACAAAGAAAACATATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAGGAACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGAACTATGCAACCTATATAATTTCCCAGGTTTTGACTGTAGAAGGTGCTCCTAAAAGAAAGCTCAGGAACATGGTATTAGAGGCCACTAGGAAACAGAGATTTGAAAGGGTTACAAGAAACTTGAAGGTGACCAGACTATTCTCCACATTGGTGGAGGAGCTGAAGGCCATAGGACTATCTTCCCATGTTGAAGCACCACGGAGTGATGTGATGGTCCCATCAGCACATTGTGATCGCAGCCCAGTTCTACTCTTGATGGGTGGTGGGATGGGATCTGGCAAGAGCACCGTGCT] [+] EMBL CB683591 [TTGGGAGGGGATAGAATGTTCNAGGGGTGGAATGTGTGATTTATGTTTTTTCACCTTGTCTTCTTTGTCGATTTCCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCCCCCACCTATGTACGCTGGCCTATGATTATCTGAGGAAGAACAAGGGTTACAAAGAAAACATATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAGGAACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGAACTATGCAACCTATATAATTTCCCAGGTTTTGACTGTAGAAGGTGCTCCTAAAAGAAAGCTCAGGAACATGGTATTAGAGGCCACTAGGAAACAGAGATTTGAAAGGGTTACAAGAAACTTGAAGGTGACCAGACTATTCTCCACATTGGTGGAGGAGCTGAAGGCCATAGGACTATCTTCCCATGTTGAAGCACCACGGAGTGATGTGATGGTCCCATCAGCACATTGTGATCGCAGCCCAGTTCTACTCTTGATGGGTGGTGGGATGGGATCTGGCAAGAGCACCGTGCT] consensusID : consensus_13545#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 175 fasta sequence [GGCGCAACTGCAGCTGAAACGCTGCNGGGCGTTAAACGAGGATGAGGGAGTACGTGGCCCGCGGCGACGCCGCGGCTGCTGGTGTCCGAACTCCCGGCGCGTCCATGANATGGNAGAGTGTTCTCGCATTAACGTCGGTACATTTGAATTGCAAGAACTCAATTCCACTCCACGA] [+] EMBL BM422152 [GGCGCAACTGCAGCTGAAACGCTGCNGGGCGTTAAACGAGGATGAGGGAGTACGTGGCCCGCGGCGACGCCGCGGCTGCTGGTGTCCGAACTCCCGGCGCGTCCATGANATGGNAGAGTGTTCTCGCATTAACGTCGGTACATTTGAATTGCAAGAACTCAATTCCACTCCACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13545#0 GTAGTCTTCTCTTCTTCCACGCGCAGGCGCAGCCATCGTCGTCATCGCCATCGCCGCCGC 60 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 GGCGCGCGCGCGCGCGCCCGTGACTGACTTCCGTAGGGGGGGACTGAGGCACGCCACCCC 120 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 GCGCGCGCGCGCGCGCGCGTGCGGCCGCACAACCACGAACGCGCTCCGAAGTCTTCCTTC 180 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 CGGGAGGGCACGTGTGGTTGGGGTATAAAGGGGGAGAGAGGCACGATGCCGCACGGCGTC 240 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 GCGCTCGTCGTCGTCGTCGTCGTCGCTCCTGGCCGGTAGCGGATGGGCGTCGTGGTGGGG 300 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ---------------GTCCCCTTTACTCCTGGCCGGTAGCGGATGGGCGTCGTGGTGGGG 45 consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 TTGCAGCTTGCTCGCCTCGCCCTCGCCCTCGCCGTCGCCGTCGCCCCCGGGTTGCTCAGC 360 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 TTGCAGCTTGCTCGCCTCGCCCTCGCCCTCGCCGTCGCCGTCGCCCCCGGGTTGCTCAGC 105 consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 TTCTCCGCCGCCGCCACCGCAGCCTGAAGCGCGCGGGCGTCGAAACGAGGATGAGGGAGT 420 consensus_13545#3 ---------------------------------------------TTGGGAGGGGATAGA 15 consensus_13545#2 TTCTCCGCCGCCGCCACCGCAGCCTGAAGCGCGCGGGCGTCGAAACGAGGATGAGGGAGT 165 consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 ACGGGCCCGCGGCGGCGC-CGCGGCTGCTGGTGTCCGACTCCGGCCGCGTCCATGAGATG 479 consensus_13545#3 ATGTTCNAGGGGTGGAATGTGTGATTTATGTTTTTTCACCTTGTC--------------- 60 consensus_13545#2 ACGGGCCCGCGGCGGCGC-CGCGGCTGCTGGTGTCCGACTCCGGCCGCGTCCATGAGATG 224 consensus_13545#1 -----------------------GCCATCGCCGCCGCGGCGCGCGCGCGCGCGCCCGTGA 37 consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 GAGAGGTTCTCGCATTACGTCGCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCCCC 539 consensus_13545#3 ------TTCTT-TGTCGATTTCCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCCCC 113 consensus_13545#2 GAGAGGTTCTCGCATTACGTCGCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCCCC 284 consensus_13545#1 CTGACTTCCGTAGGGGGGGACTTCAACTGAGGCACGCCACCCCGCGCGCGCGTGCGGCCG 97 consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 CACCTATGTACGCTGGCCTATGA---TTATCTGAGGAAGAACAAGGGTTACGAAGAAAAC 596 consensus_13545#3 CACCTATGTACGCTGGCCTATGA---TTATCTGAGGAAGAACAAGGGTTACAAAGAAAAC 170 consensus_13545#2 CACCTATGTACGCTGGCCTATGA---TTATCTGAGGAAGAACAAGGGTTACGAAGAAAAC 341 consensus_13545#1 CACAGCCACGAACGCGCTCCGAAGTCTTCCTTCCGGGAGGGCACGTGTGGTTGGGGTATA 157 consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 ATATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAG 656 consensus_13545#3 ATATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAG 230 consensus_13545#2 ATATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAG 401 consensus_13545#1 AAGGGGGAGAGAGGCACGATGCCGCACGGCGTCGCGCTCGTCGTCGTCGTCGTCGTCGCT 217 consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 GAACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGAACTATGCAACCTATATA 716 consensus_13545#3 GAACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGAACTATGCAACCTATATA 290 consensus_13545#2 GAACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGAACTATGCAACCTATATA 461 consensus_13545#1 CCTGGCCGGTAGCGGATGGGCGTCGTGGTGGGGTTGCAGCTTGCTCGCCTCGCCCTCGCC 277 consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 ATTTCCCAGGTTTTGACTGTAGAAGGTGCTCCTAAAAGAAAGCTCAGGAACATGGTATTA 776 consensus_13545#3 ATTTCCCAGGTTTTGACTGTAGAAGGTGCTCCTAAAAGAAAGCTCAGGAACATGGTATTA 350 consensus_13545#2 ATTTCCCAGGTTTTGACTGTAGAAGGTGCTCCTAAAAGAAAGCTCAGGAACATGGTATTA 521 consensus_13545#1 CTCGCCCTCGCCCTCGCCGTCGCCGTCGCCGTCGCCCCCGGGTTGCTCAGCTTCTCCGCC 337 consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 GAGGCCACTAGGAAACAGAGATTTGAAAGGGTTACAAGAAACTTGAAGGTGACCAGACTA 836 consensus_13545#3 GAGGCCACTAGGAAACAGAGATTTGAAAGGGTTACAAGAAACTTGAAGGTGACCAGACTA 410 consensus_13545#2 GAGGCCACTACGAAACAGAGATTTGAAAGGGTTACAAGAAACTTGAAGGTGACCAGACTA 581 consensus_13545#1 GCCGCCACCGCAGCCTGAAGCGC-GCGGGCGTCGAAACGAGGATGAGGG-----AGTACG 391 consensus_13545#4 GGCGCAACTGCAGC-TGAAACGCTGCNGGGCGTTAAACGAGGATGAGGG-----AGTACG 54 * ** ** * * * ** * *** ** ** consensus_13545#0 TTCTCCACATTGGTGGAGGAGCTGAAGGCCATAGGACTATCTTCCCATGTTGAAGCACCA 896 consensus_13545#3 TTCTCCACATTGGTGGAGGAGCTGAAGGCCATAGGACTATCTTCCCATGTTGAAGCACCA 470 consensus_13545#2 TTCTCCACATTGGTGGAGGAGCTGAAGGCCATAGGACTATCTTCCCATGTTGAAGCACCA 641 consensus_13545#1 -GGCCCGCGGCGGCGCCGCGGCTGCTGGTGTCCGA-CTCCGGCCGCGT-CCATGAGATGG 448 consensus_13545#4 TGGCCCGCGGCGACGCCGCGGCTGCTGGTGTCCGAACTCCCGGCGCGT-CCATGANATGG 113 ** * * * * **** ** * ** * * * * consensus_13545#0 CGGAGTGATGTGATGGTCCCAGCA----GCACATTGTGATCGC-----AGCCCAGTTCTA 947 consensus_13545#3 CGGAGTGATGTGATGGTCCCATCA----GCACATTGTGATCGC-----AGCCCAGTTCTA 521 consensus_13545#2 CGGAGTGA---------------------------------------------------- 649 consensus_13545#1 AGAGGT--TCTCGCATTA-CGTCGCTAGGCAAATTGGGTTTGACCATGTGGATGAATGCC 505 consensus_13545#4 NAGAGTGTTCTCGCATTAACGTCG----GTACATTTGAATTG--CAAGAACTCAATTCCA 167 ** consensus_13545#0 CTCT-TGATGGGTGGTGGGATGGGAGCTGGCAAGAGCACCGTGCTTAAGGATATACTCAA 1006 consensus_13545#3 CTCT-TGATGGGTGGTGGGATGGGATCTGGCAAGAGCACCGTGCT--------------- 565 consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 CCCACCTATGTACGCTGGCCTATGATTATCTGAGGAAGAACAAGGGTTACGAAGAAAACA 565 consensus_13545#4 CTCCACGA---------------------------------------------------- 175 consensus_13545#0 GGAAGCATTCTGGTCCGGAGCAGCTGCAAATGCAGTAGTTGTAGAGGCAGATGCATTCAA 1066 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 TATTCGCGTTCTTCCAAAACAGCCAGGATCCCGAGACTCTGATTGTAAAGTTCATCGAGG 625 consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 GGAAACTGATGTAATCTATCGAGCTATCAGCTCAAGAGGCCACCACAATGACATGCTGCA 1126 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 AACTCGACAAATGTATACTTGGCTACTTCTCATTCCATTGGGACTATGCAACCT------ 679 consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 GACGGCAGAACTGGTACATCAGTCATCGATGGACGCAGCCTCGTCGCTCCTGGTGACTGC 1186 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 CCTCAACGAAGGGAGGGATGTGATCATGGACGGCACCATGTCGTGGGAGCCGTTTGTCCA 1246 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 GCAGACGATCACCATGGCCAGGGCTGTGCACCGGCAACGGTACCGCATGGGTGTTGGCTA 1306 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 CAAGGTCACGGAGGACGGGTCAATCACTGAGGAGTACTGGGAGCCAGTTGAGGACTCCAG 1366 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 TACAGATGAAGAAGGCGAGACGAGAAACAGGAAGCCATATCGCATCGAGCTCGTAGGTGT 1426 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 GGTCTGTGATGCCTATCTTGCGGTTGTCAGGGGAATCAGGAGAGCTGTGATCACCGGGAG 1486 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 AGCAGTGAGGGTGAAGTCCCAGCTGAAGTCCCACAAGCGGTTCGCCACCGCGTTCCACAG 1546 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 CTACTGCAACCTCGTCGACAATGCGAGGCTCTACTGCACCAACTCCACGGGCGCCGCCAA 1606 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 GCTGATAGGATGGAAGGACGGCGAGAGCAACCTTCTAGTGGACCCTGAAGAAATCGGCTG 1666 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 CTTGGAGAGGGTGAGCCACCTCAACGACGAGGCCGACTGCGTCCACGAGATCTATCCGGA 1726 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 CGGCTCGGCGGCGGCGGCCTGGGAGGCCCTGGTCACGTCGCCGTCGAGGGCGCCGGCGCA 1786 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 GCGGGAGATCATGGCGGCGGTCCAGAGGAGCGAGGCGCGCTTCCGGACCACGTCCACGCC 1846 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 CTCGTAGCTGCAGCACACGATCACTCGTGTCAGGTTGGAATTTTCTTTTCTTTTGACACG 1906 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 ATTTCAGGTAGGACTGGGGGTATTTGGGTGTTGGTTGTGTGTGGTGGCTGCCAAATGGCT 1966 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 CGTGGGACACAGTTCGTGTTATGTACGTATCATACTGTACATTGTATCAACTGATCCTGA 2026 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 CTCCGTTACCACCCGGCATATTGTTTCGTTTTGCCGGGCGATCGAGCTGCATCGAATGGA 2086 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 GCTCGTCGGAGTCATCGGGCATGTACACATGTGTCTTGTACGATGTATTCCGGATCTAGA 2146 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 CAAGAAACAACACATACTTTTCATGGTCACTTCAGTGAAAGCCCTGATGAAAAAAACTCA 2206 consensus_13545#3 ------------------------------------------------------------ consensus_13545#2 ------------------------------------------------------------ consensus_13545#1 ------------------------------------------------------------ consensus_13545#4 ------------------------------------------------------------ consensus_13545#0 ATGACCCTTCCCCTCGAAAAAAAAAAA 2233 consensus_13545#3 --------------------------- consensus_13545#2 --------------------------- consensus_13545#1 --------------------------- consensus_13545#4 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||