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Oryza sativa
cluster # 13552 cluster # 13552       Sequences # 13       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13552#0 length = 1096 sequences # 6  
consensus_13552#1 length = 1087 sequences # 4  
consensus_13552#2 length = 560 sequences # 1  
consensus_13552#3 length = 156 sequences # 1  
consensus_13552#4 length = 92 sequences # 1  

consensusID : consensus_13552#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1096
fasta sequence
                              [CAGTAGTAACTGCCTGGAAACTTCCGGAAGCATCGATCTGGAGAGAGAGAGAGAGGGGCAGCCAAGATTGAAGCGCACGATAGTACGAACGCGCACAAATCCCGCCCCTCCTCTCCTCCTCCCCGAACCGCAGGAACGCGATTTGAATCGATCGATCGATCGATCTCATCTCCCCCCTTTCGCCTGAGATCTGCAGCAAACGGCTGATTTGTCCCCGCTGATGGAGGAGACCGCGACGGCGGCGGCCGCGGCGGAGAAGGCGTCGTCGTATAGGTACTGGGTGCGGGAGGCCACCGGGGACGCCGCGCCGCTGCCCGTCCCCCGCAAGCTCGACGCGACCGCCGCCGCCGCCGCCAACGGGAACGGCAACCCGCCGCCGCTCGGCTCCGTGTGGAATCAGGCTGGAACCTGGGAGGAAAAGAACCTCAATTCATGGGCTAACAGTAGGATAAAGGAAATGTTGGGTTCTTTAGATTCGCTAGAATTCCCTACAGGGAAGGCATCTCTTGATGGAGTGTCTAAATGCATTGGTGATGCCTTTCTAGTCACCGTTCGTAATAAGAAGAGAGTAGGGTATACCTATGAA-CTAAGCTTGAAATTTAAGGGTGAATGGTTAATTAAAGAAGAAAAGATGAAGGTCAAAGGCCATCTGGACATTCCTGAGTTTTCTTTCGGTGAGCTGGAGGACTTGGAGGTAGAAGTAAGGTTTACCGATGA-CAAGGGCCTCGCATCCGACGACAAGAGGCAGATTTGCAAGGACCTCAAGTCCTTCCTTTCACCTATCCGGGAGAAACTGCGCGCATTCGAAGAAGAGCTCAAGGATAGGTAACAG--AAAATGCCATCAAACCGGCAGCATCAGCAAGGCAAGTAACTGCCCTGCTTTCCCAATATTAGCGTCGAATCATGTAACGTTGTAACGGCAGCAGAATGATCATCTGAGTTTGATATTCATGCCTTGTTAGATCACTTAAGGTCCCATATTTTTCGCAATATCCGATCGCATGTAACTGCGACTGTATGTTGTAGACACTTTGTTGTAAACTCCGGTCGTCCAGATGAATATGAAGTTATGAACTGTCAAAAAAACAAAAAAAAA]

[+] EMBL AK065722             [CAGTAGTAACTGCCTGGAAACTTCCGGAAGCATCGATCTGGAGAGAGAGAGAGAGGGGCAGCCAAGATTGAAGCGCACGATAGTACGAACGCGCACAAATCCCGCCCCTCCTCTCCTCCTCCCCGAACCGCAGGAACGCGATTTGAATCGATCGATCGATCGATCTCATCTCCCCCCTTTCGCCTGAGATCTGCAGCAAACGGCTGATTTGTCCCCGCTGATGGAGGAGACCGCGACGGCGGCGGCCGCGGCGGAGAAGGCGTCGTCGTATAGGTACTGGGTGCGGGAGGCCACCGGGGACGCCGCGCCGCTGCCCGTCCCCCGCAAGCTCGACGCGACCGCCGCCGCCGCCGCCAACGGGAACGGCAACCCGCCGCCGCTCGGCTCCGTGTGGAATCAGGCTGGAACCTGGGAGGAAAAGAACCTCAATTCATGGGCTAACAGTAGGATAAAGGAAATGTTGGGTTCTTTAGATTCGCTAGAATTCCCTACAGGGAAGGCATCTCTTGATGGAGTGTCTAAATGCATTGGTGATGCCTTTCTAGTCACCGTTCGTAATAAGAAGAGAGTAGGGTATACCTATGAA CTAAGCTTGAAATTTAAGGGTGAATGGTTAATTAAAGAAGAAAAGATGAAGGTCAAAGGCCATCTGGACATTCCTGAGTTTTCTTTCGGTGAGCTGGAGGACTTGGAGGTAGAAGTAAGGTTTACCGATGA CAAGGGCCTCGCATCCGACGACAAGAGGCAGATTTGCAAGGACCTCAAGTCCTTCCTTTCACCTATCCGGGAGAAACTGCGCGCATTCGAAGAAGAGCTCAAGGATAGGTAACAG  AAAATGCCATCAAACCGGCAGCATCAGCAAGGCAAGTAATTGCCCTGCTTTCCCAATATTAGCGTCGAATCATGTAACGTTGTAACGGCAGCAGAATGATCATCTGAGTTTGATATTCATGCCTTGTTAGATCACTTAAGGTCCCATATTTTTCGCAATATCCGATCGCATGTAACTGCGACTGAATGTTGTAGACACTTTGTTGTAAACTCCGGTCGTCCAGATGAATATGAAGTT                           ]
[+] EMBL AU069221             [                                                         GCAGCCAAGATTGAAGCGNACGATAGTACGAACGCGCACAAATCCCGCCCCTCCTCTCCTCCTCCCCGAACCGCA GAACGCGATTTGAATCGATCGATCGATCGATCTCATCTCCCCCCTTTCGCCTGAGATCTGCAGCAAACGGCTGATTTGTCCCCGCTGATGGAGGAGACCGCGACGGgctgg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM038628             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGTATACCTATGAATCTAAGCTTG AATTTAAGGGTGAATGGTTAATTAAAGAAGAAAAGATGAAGGTCAAAGGCCATCTGGACATTCCTGAGTTTTCTTTCGGTGAGCTGGAGGACTTGGAGGTAGAAGTAAGGTTTACCGATGA CAAGGGCCTCGCATCCGACGACAAGAGGCAGATTTGCAAGGACCTCAAGTCCTTCCTTTCACCTATCCGGGAGAAACTGCGCGCATTCGAAGAAGAGCTCAAGGATAGGTAACAG  AAAATGCCATC AACCGGCAGCATCAGCAAGGCAAGTAACTGCCCTGCTTTCCCAATATTAGCGTCGAATCATGTAAC  TGTAACGGCAGCAGAATGATCATCTGAGTTTGATATTCATGCCTTGTTAGATCACTTAAGGTCCCATATTTTTC CAATATCCGATCGCATGTAACTGCGACTGTATGTTGTAGACACTTTGTTGTAAACTCCGGTCGTCCAGATGAATATGAAGTTATGAACTGTCAAAAAAACAAAAA    ]
[+] EMBL BQ906614             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGAAGTTCAAAGGCCATCTGGACATTCCTGAGTTTTCTTTCGGTGAGCTGGAGGACTTGGAGGTAGAAGTAAGGTTTACCGATGACCAAGGGCCTCGCATCCGACGACAAGAGGCAGATTTGCAAGGACCTCAAGTCCTTCCTTTCACCTATCCGGGAGAAACTGCGCGCATTCGAAGAAGAGCTCAAGGATAGGTAACAGTNTAAATGCCATCAAACCGGCAGCATCAGCAAGGCAAGTAACTGCCCTGCTNTCCCAATATTAGCGTCGAATCATGTAAC  TGTAACGGCAGCAGAATGATCATCTGAGTTTGATATTCATGCCTTGTTAGATCACTTAAGGTCCCATATTTTTCGCAATATCCGATCGCATGTAACTGCGACTGTATGTTGTAGACACTTTGTTGTAAACTCCGGTCGTCCAGATGAATATGAAGTTATGAACTGTCAAAA             ]
[+] EMBL AU166537             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGACATTCCTGAGTTTTCTTTCGGTGAGCTGGAGGACTTGGAGGTAGAAGTAAGGTTTACCGATGA CAAGGGCCTCGCATCCGACGACAAGAGGCAGATTTGCAAGGACCTCAAGTCCTTCCTTTCACCTATCCGGGAGAAACTGCGCGCATTCGAAGAAGAGCTCAAGGATAGGTAACAG  AAAATGCCATCAAACCGGCAGCATCAGCAAGGCAAGTAATTGCCCTGCTTTCCCAATATTAGCGTCGAATCATGTAACGTTGTAACGGCAGCAGAATGATCATCTGAGTTTGATATTCATGCCTTGTTAGATCACTTAAGGTCCCATATTTTTCGCAATATCCGATCGCATGTAACTGCGACTGTATGTTGTAGACACTTTGTTGTAAACTCCGGTCGTCCAGATGAATATGAAGTTATGAACTGTCAAAAAAACAAAAAAAAA]
[-] EMBL CA763621             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        agaggaCGA GACAAGGGGCAGATTTGCAAGGACCTCAAGTCCTTCCTTTCACCTATCCGGGAGAAACTGCGCGCATTTGAAGAAGAGCTCAAGGATAGGTAACAG  AAAATGCCATCAAACCGGCAGCATCAGCAAGGCAAGTAACTGCCCTGCTTTCCCAATATTAGCGTCGAATCATGTAACGTTGTAACGGCAGCAGAATGATCATCTGAGTTTGGTATTCATGCCTTGTTAGATCACTTAAGGTCCCATATTTTTCGCAATATCCGATCGCATGTAACTGCGACTGTATGTTGTAGACACTTTGTTGTAAACTCCGGTCGTCCAGATGAATATGAAGTTATGAACTGTCAAAAAAACAAAAAAAA ]


>consensus_13552#0 CAGTAGTAACTGCCTGGAAACTTCCGGAAGCATCGATCTGGAGAGAGAGAGAGAGGGGCA GCCAAGATTGAAGCGCACGATAGTACGAACGCGCACAAATCCCGCCCCTCCTCTCCTCCT CCCCGAACCGCAGGAACGCGATTTGAATCGATCGATCGATCGATCTCATCTCCCCCCTTT CGCCTGAGATCTGCAGCAAACGGCTGATTTGTCCCCGCTGATGGAGGAGACCGCGACGGC GGCGGCCGCGGCGGAGAAGGCGTCGTCGTATAGGTACTGGGTGCGGGAGGCCACCGGGGA CGCCGCGCCGCTGCCCGTCCCCCGCAAGCTCGACGCGACCGCCGCCGCCGCCGCCAACGG GAACGGCAACCCGCCGCCGCTCGGCTCCGTGTGGAATCAGGCTGGAACCTGGGAGGAAAA GAACCTCAATTCATGGGCTAACAGTAGGATAAAGGAAATGTTGGGTTCTTTAGATTCGCT AGAATTCCCTACAGGGAAGGCATCTCTTGATGGAGTGTCTAAATGCATTGGTGATGCCTT TCTAGTCACCGTTCGTAATAAGAAGAGAGTAGGGTATACCTATGAACTAAGCTTGAAATT TAAGGGTGAATGGTTAATTAAAGAAGAAAAGATGAAGGTCAAAGGCCATCTGGACATTCC TGAGTTTTCTTTCGGTGAGCTGGAGGACTTGGAGGTAGAAGTAAGGTTTACCGATGACAA GGGCCTCGCATCCGACGACAAGAGGCAGATTTGCAAGGACCTCAAGTCCTTCCTTTCACC TATCCGGGAGAAACTGCGCGCATTCGAAGAAGAGCTCAAGGATAGGTAACAGAAAATGCC ATCAAACCGGCAGCATCAGCAAGGCAAGTAACTGCCCTGCTTTCCCAATATTAGCGTCGA ATCATGTAACGTTGTAACGGCAGCAGAATGATCATCTGAGTTTGATATTCATGCCTTGTT AGATCACTTAAGGTCCCATATTTTTCGCAATATCCGATCGCATGTAACTGCGACTGTATG TTGTAGACACTTTGTTGTAAACTCCGGTCGTCCAGATGAATATGAAGTTATGAACTGTCA AAAAAACAAAAAAAAA



consensusID : consensus_13552#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1087
fasta sequence
                              [GCAGCCCGGTCCAGCCCACCAAGCAGGTGAGGGGCGGAGATGGAGGAGANGGCGGNGGCGGCGGCGGAGAAGGCGACGTCGTACAGTTACTGGGTGCGGGAGGCCACGGGCGACGCCGCGCCGCTTCCTGCGCCACGCAAGATCGACGCCGCCGACCTCGCCGCCAAGCCCGCGCCCACCACCCTCGGCTCCGTCTGGAACAAGGCTGGAACCTGGGAGGAAAAGAACCTCAATTCATGGGCCAACGGTAGGATAAAGGATTTGCTGGGCTCATTAGACCCTTTGGAATTTTCTACTGGGAAGGCATCTGTTTACGAAGTATCCAAGTGTTCAGGCGATGCATTTCTGGTCACTGTCCGTAATAAGAAGAGAGTAGGCTATACTTATGAGCTGGGCTTAAAATTTAAAGGTGAATGGTTAATTAAGGAAGAAAACAAGAAGGTGAAAGGCTATCTGGACATTCCAGAATTTTCATTTGGTGAACTTGAAG-ACTTAGAGGTGCAAATAA-GTTTTACCGACATCAAGGACCTCTCGTCCGACAACAAGGCACAAATCAGCAAGGATTTGAAGTCGTTTCTTGCACCGATCCGGGAGAAA-CTGCGCAAGTTTGAAGAAGAGCTCAAGGATAGATAGCCAAGCTTGCAAACCTGGTTGAAGCCATACGTATCAAAAGATGATGGCTTATCTATAGCCTTTTCACGATCANAAGACTGGCTTAAACGTTACTGCNGTAAAGTNGTTCCATACCTTGNTGANTATTCCCACCCCGTGTGGTCATTTGCCGATCAACTCATACCTGGGCCCCTGGTGAACTTACAGACCANTGTGGCCGAATTTTCTGAGCGAAATANTTTCGCGGATTCTGATGGATTAGGCCCGGCCTTGGCCAATTTAAAAAGGTGCGCCAGCTGTGGTTATATATATACCTGGGAATCCCATCAACTCAAAAAAAAAAAAAAAAAAGGGGGCGGGCGGACGCCCTCCATATATAAACTCCTCGGCCGTCCCTCCCCGAGGAGAGAGGCTCAAATTGGTACTCTCCCTCCTGGTATGTAGTAGGAGGGCGCGCCCCCCCCTCCAAAGGGGT]

[+] EMBL AK066056             [GCAGCCCGGTCCAGCCCACCAAGCAGGTGAGGGGCGGAGATGGAGGAGACGGCGGCGGCGGCGGCGGAGAAGGCGACGTCGTACAGTTACTGGGTGCGGGAGGCCACGGGCGACGCCGCGCCGCTTCCTGCGCCACGCAAGATCGACGCCGCCGACCTCGCCGCCAAGCCCGCGCCCACCACCCTCGGCTCCGTCTGGAACAAGGCTGGAACCTGGGAGGAAAAGAACCTCAATTCATGGGCCAACGGTAGGATAAAGGATTTGCTGGGCTCATTAGACCCTTTGGAATTTTCTACTGGGAAGGCATCTGTTTACGAAGTATCCAAGTGTTCAGGCGATGCATTTCTGGTCACTGTCCGTAATAAGAAGAGAGTAGGCTATACTTATGAGCTGGGCTTAAAATTTAAAGGTGAATGGTTAATTAAGGAAGAAAACAAGAAGGTGAAAGGCTATCTGGACATTCCAGAATTTTCATTTGGTGAACTTGAAG ACTTAGAGGTGCAAATAA GTTTTACCGACATCAAGGACCTCTCGTCCGACAACAAGGCACAAATCAGCAAGGATTTGAAGTCGTTTCTTGCACCGATCCGGGAGAAA CTGCGCAAGTTTGAAGAAGAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL OSR30011A            [       GGTCCAGCCCACCAAGCAGGTGAGGGGCGGAGATGGAGGAGANGGTGGNGGCGGCGGCGGAGAAGGCGACGTCGTACAGTTACTGGGTGCGGGAGGCCACGGGCGACGCCGCGCCGNTTCCTGCGCCACGCAAGATCGACGNCNNCGACCTCGCCGCCAAGCCCGCGCCCACCACCCTCGGCTCCNTNTGGAACAAGGCTGGAACCTGGGAGGAAAAGAACCTCAATTCATGGGCCAACGGTAGGATAAAGGATTTGCTGGGCTCATTAGACCCTTTNGAATTTTCTACTGGGAAGGCATCTGTTTACGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL OSR3064A             [       GGTCCAGCCCACCAAGCAGGTGAGGGGCGGAGATGGAGGAGANGGNGGNGGCGGCGGCGGAGAAGGCGACGTCGTACAGTTACTGGGTGCGGGAGGCCACGGGCGACGCCGCGCCGCTTCCTNCGNCACGCAAGATCGANGCCGCCGACCTCGCCGNCAAGCCCGCGACCACCACCCTCGGNTCCGTCTGGAACAAGGCTGGAACCTGGGAGGAAAAGAACCTCAATTCATGGGCCAACGGTAGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AW155089             [                                                                                                                                                                                                            GCTGGAACCTGGGAGGAAAAGAACCTCAATTCATGGGCCAACGGTAGGATAAAGGATTTGCTGGGCTCATTAGACCCTTTGGAATTTTCTACTGGGAAGGCATCTGGTTACGAAGTATCCAAGTGTTCAAGCGATGCATTTCTGGTCACTGGCCCTAATAAGAAGAAAGTAGGCTATACTTATGAGCTGGGCTTAAAATTTAAAGGTGAATGGTTAATTAAGGGAGAAAACAAGAAGGGGAAAGGCTATCTGGACCTTCCAGAATTTTCATTTGGGGAACCTGAAGAACTTAAAGG GCAAATAAGGTTTAACCGACCTCAAGGACCTCTCGTNCGACAACAAGGCACCAATTAGCCAGGGTTTGAAGTCGTTCTTTGCA CGATCCGGGAGAAACCGGCGCAAGTTTG AGAAGAGCTCAAGGATAGATAGCCAAGCTTGCAAACCTGGTTGAAGCCATACGTATCAAAAGATGATGGCTTATCTATAGCCTTTTCACGATCANAAGACTGGCTTAAACGTTACTGCNGTAAAGTNGTTCCATACCTTGNTGANTATTCCCACCCCGTGTGGTCATTTGCCGATCAACTCATACCTGGGCCCCTGGTGAACTTACAGACCANTGTGGCCGAATTTTCTGAGCGAAATANTTTCGCGGATTCTGATGGATTAGGCCCGGCCTTGGCCAATTTAAAAAGGTGCGCCAGCTGTGGTTATATATATACCTGGGAATCCCATCAACTCAAAAAAAAAAAAAAAAAAGGGGGCGGGCGGACGCCCTCCATATATAAACTCCTCGGCCGTCCCTCCCCGAGGAGAGAGGCTCAAATTGGTACTCTCCCTCCTGGTATGTAGTAGGAGGGCGCGCCCCCCCCTCCAAAGGGGT]


>consensus_13552#1 GCAGCCCGGTCCAGCCCACCAAGCAGGTGAGGGGCGGAGATGGAGGAGANGGCGGNGGCG GCGGCGGAGAAGGCGACGTCGTACAGTTACTGGGTGCGGGAGGCCACGGGCGACGCCGCG CCGCTTCCTGCGCCACGCAAGATCGACGCCGCCGACCTCGCCGCCAAGCCCGCGCCCACC ACCCTCGGCTCCGTCTGGAACAAGGCTGGAACCTGGGAGGAAAAGAACCTCAATTCATGG GCCAACGGTAGGATAAAGGATTTGCTGGGCTCATTAGACCCTTTGGAATTTTCTACTGGG AAGGCATCTGTTTACGAAGTATCCAAGTGTTCAGGCGATGCATTTCTGGTCACTGTCCGT AATAAGAAGAGAGTAGGCTATACTTATGAGCTGGGCTTAAAATTTAAAGGTGAATGGTTA ATTAAGGAAGAAAACAAGAAGGTGAAAGGCTATCTGGACATTCCAGAATTTTCATTTGGT GAACTTGAAGACTTAGAGGTGCAAATAAGTTTTACCGACATCAAGGACCTCTCGTCCGAC AACAAGGCACAAATCAGCAAGGATTTGAAGTCGTTTCTTGCACCGATCCGGGAGAAACTG CGCAAGTTTGAAGAAGAGCTCAAGGATAGATAGCCAAGCTTGCAAACCTGGTTGAAGCCA TACGTATCAAAAGATGATGGCTTATCTATAGCCTTTTCACGATCANAAGACTGGCTTAAA CGTTACTGCNGTAAAGTNGTTCCATACCTTGNTGANTATTCCCACCCCGTGTGGTCATTT GCCGATCAACTCATACCTGGGCCCCTGGTGAACTTACAGACCANTGTGGCCGAATTTTCT GAGCGAAATANTTTCGCGGATTCTGATGGATTAGGCCCGGCCTTGGCCAATTTAAAAAGG TGCGCCAGCTGTGGTTATATATATACCTGGGAATCCCATCAACTCAAAAAAAAAAAAAAA AAAGGGGGCGGGCGGACGCCCTCCATATATAAACTCCTCGGCCGTCCCTCCCCGAGGAGA GAGGCTCAAATTGGTACTCTCCCTCCTGGTATGTAGTAGGAGGGCGCGCCCCCCCCTCCA AAGGGGT



consensusID : consensus_13552#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 560
fasta sequence
                              [GTTCCGTCCGGATTCCGGTCGACCACGCGTCCGGAAGAGAGTAGGGTATACCTATGAACTAAGCTTGAAATTTAAGGTTGAATGGTTAATTAAAGAAGAAAAGATGAAGGTCAAAGGCCACTCTGGACATTCCTGAGTNTTCNTTTCGGTGACTGGAGGACTTGGAGGTAGAAGTAAGGTTTACCGATGACAAGGGCCTCGCATCCGACGGACAAGAGGCAGATTTGCAAGGACCTCAAGTCCTTCCTTTCACCTATCCGGGAGAAACTGCGCGCATTCGAAGAAGAGCTCAAGGATAGGTAACAGAAAATGCCATCAACCGGCAGCATCAGCAAGGCAAGTAACTGCCCTGCTTTCCCAATATTAGCGTCGAATCATGTAACTGTAACGGCAGCAGAATGATCATCTGAGTTTGATATTCATGCCTTGTTAGATCACTTAAGGTCCCATATTTTTCGCAATATCCGATCGCATGTAACTGCGACTGTATGTTGTAGACACTTTGTTGTAAACTCCGGTCGTCCAGATGAATATGAAGTTATGAACTGTCAAAAAAAAAA]

[+] EMBL BM421444             [GTTCCGTCCGGATTCCGGTCGACCACGCGTCCGGAAGAGAGTAGGGTATACCTATGAACTAAGCTTGAAATTTAAGGTTGAATGGTTAATTAAAGAAGAAAAGATGAAGGTCAAAGGCCACTCTGGACATTCCTGAGTNTTCNTTTCGGTGACTGGAGGACTTGGAGGTAGAAGTAAGGTTTACCGATGACAAGGGCCTCGCATCCGACGGACAAGAGGCAGATTTGCAAGGACCTCAAGTCCTTCCTTTCACCTATCCGGGAGAAACTGCGCGCATTCGAAGAAGAGCTCAAGGATAGGTAACAGAAAATGCCATCAACCGGCAGCATCAGCAAGGCAAGTAACTGCCCTGCTTTCCCAATATTAGCGTCGAATCATGTAACTGTAACGGCAGCAGAATGATCATCTGAGTTTGATATTCATGCCTTGTTAGATCACTTAAGGTCCCATATTTTTCGCAATATCCGATCGCATGTAACTGCGACTGTATGTTGTAGACACTTTGTTGTAAACTCCGGTCGTCCAGATGAATATGAAGTTATGAACTGTCAAAAAAAAAA]


>consensus_13552#2 GTTCCGTCCGGATTCCGGTCGACCACGCGTCCGGAAGAGAGTAGGGTATACCTATGAACT AAGCTTGAAATTTAAGGTTGAATGGTTAATTAAAGAAGAAAAGATGAAGGTCAAAGGCCA CTCTGGACATTCCTGAGTNTTCNTTTCGGTGACTGGAGGACTTGGAGGTAGAAGTAAGGT TTACCGATGACAAGGGCCTCGCATCCGACGGACAAGAGGCAGATTTGCAAGGACCTCAAG TCCTTCCTTTCACCTATCCGGGAGAAACTGCGCGCATTCGAAGAAGAGCTCAAGGATAGG TAACAGAAAATGCCATCAACCGGCAGCATCAGCAAGGCAAGTAACTGCCCTGCTTTCCCA ATATTAGCGTCGAATCATGTAACTGTAACGGCAGCAGAATGATCATCTGAGTTTGATATT CATGCCTTGTTAGATCACTTAAGGTCCCATATTTTTCGCAATATCCGATCGCATGTAACT GCGACTGTATGTTGTAGACACTTTGTTGTAAACTCCGGTCGTCCAGATGAATATGAAGTT ATGAACTGTCAAAAAAAAAA



consensusID : consensus_13552#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 156
fasta sequence
                              [AGATTGAAGCGCACGATAGTACGAACGCGCACAAATCCCGCCCNNNCTCTCCTCCTNCNCGAACCGCAGNACGCGATTTNAATCGATCGATCGATCGATCNNATCTCCCCNNTTTCGNCTGANATCTNCAGNAAACGGCTNAATTTTNTCCCCNNT]

[+] EMBL AU068389             [AGATTGAAGCGCACGATAGTACGAACGCGCACAAATCCCGCCCNNNCTCTCCTCCTNCNCGAACCGCAGNACGCGATTTNAATCGATCGATCGATCGATCNNATCTCCCCNNTTTCGNCTGANATCTNCAGNAAACGGCTNAATTTTNTCCCCNNT]


>consensus_13552#3 AGATTGAAGCGCACGATAGTACGAACGCGCACAAATCCCGCCCNNNCTCTCCTCCTNCNC GAACCGCAGNACGCGATTTNAATCGATCGATCGATCGATCNNATCTCCCCNNTTTCGNCT GANATCTNCAGNAAACGGCTNAATTTTNTCCCCNNT



consensusID : consensus_13552#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 92
fasta sequence
                              [GGTTTTTTTTTTAATTATTTTTGCCGGGTCTCGCCGCGAAGACGCCATCGGAGGCAGGCAGCCCGGTCCAGCCCACCAAGCAGGTGAGGGGC]

[+] EMBL D43487               [GGTTTTTTTTTTAATTATTTTTGCCGGGTCTCGCCGCGAAGACGCCATCGGAGGCAGGCAGCCCGGTCCAGCCCACCAAGCAGGTGAGGGGC]


>consensus_13552#4 GGTTTTTTTTTTAATTATTTTTGCCGGGTCTCGCCGCGAAGACGCCATCGGAGGCAGGCA GCCCGGTCCAGCCCACCAAGCAGGTGAGGGGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13552#0      CAGTAGTAACTGCCTGGAAACTTCCGGAAGCATCGATCTGGAGAGAGAGAGAGAGGGGCA 60
consensus_13552#2      ------------------------------------------------------------
consensus_13552#3      ------------------------------------------------------------
consensus_13552#1      ------------------------------------------------------------
consensus_13552#4      ------------------------------------------------------------
                                                                                   

consensus_13552#0      GCCAAGATTGAAGCGCACGATAGTACGAACGCGCACAAATCCCGCCCCTCCTCTCCTCCT 120
consensus_13552#2      ------------------------------------------------------------
consensus_13552#3      ------------------------------------------------------------
consensus_13552#1      ------------------------------------------------------------
consensus_13552#4      ------------------------------------------------------------
                                                                                   

consensus_13552#0      CCCCGAACCGCAGGAACGCGATTTGAATCGATCGATCGATCGATCTCATCTCCCCCCTTT 180
consensus_13552#2      ------------------------------------------------------------
consensus_13552#3      ------------------------------------------------------------
consensus_13552#1      ------------------------------------------------------------
consensus_13552#4      ------------------------------------------------------------
                                                                                   

consensus_13552#0      CGCCTGAGATCTGCAGCAAACGGCTGATTTGTCCCCGCTGATGGAGGAGACCGCGACGGC 240
consensus_13552#2      ------------------------------------------------------------
consensus_13552#3      ------------------------------------------------------------
consensus_13552#1      ------------------GCAGCCCGGTCCAGCCCACCAAGCAGGTGAGGGGCGGAGATG 42
consensus_13552#4      ------------------------------------------------------------
                                                                                   

consensus_13552#0      GGCGGCCGCGGCGGAGAAGGCGTCGTCGTATAGGTACTGGGTGCGGGAGGCCACCGGGGA 300
consensus_13552#2      ------------------------------------------------------------
consensus_13552#3      ------------------------------------------------------------
consensus_13552#1      GAGGAGANGGCGGNGGCGGCGGCGGAGAAGGCGACGTCGTACAGTTACTGGGTGCGGGAG 102
consensus_13552#4      ------------------------------------------------------------
                                                                                   

consensus_13552#0      CGCCGCGCCGCTGCCCGTCCCCCGCAAGCTCGACGCGACCGCCGCCGCCGCCGCCAACGG 360
consensus_13552#2      ------------------------------------------------------------
consensus_13552#3      ------------------------------------------------------------
consensus_13552#1      GCCACGGGCGACGCCGCGCCGCTTCCTGCGCCACGCAAGATCGACGCCGCCGACCTCGCC 162
consensus_13552#4      ------------------------------------------------------------
                                                                                   

consensus_13552#0      GAACGGCAACCCGCCGCCGCTCGGCTCCGTGTGGAATCAGGCTGGAACCTGGGAGGAAAA 420
consensus_13552#2      ------------------------------------------------------------
consensus_13552#3      ------------------------------------------------------------
consensus_13552#1      GCCAAGCCCGCGCCCACCACCCTCGGCTCCGTCTGGAACAAGGCTGGAACCTGGGAGGAA 222
consensus_13552#4      ------------------------------------------------------------
                                                                                   

consensus_13552#0      GAACCTCAATTCATGGGCTAACAGTAGGATAAAGGAAATGTTGGGTTCTTTAGATTCGCT 480
consensus_13552#2      ------------------------------------------------------------
consensus_13552#3      ------------------------------------------------------------
consensus_13552#1      AAGAACCTCAATTCATGGGCCAACGGTAGGATAAAGGATTTGCTGGGCTCATTAGACCCT 282
consensus_13552#4      ------------------------------------------------------------
                                                                                   

consensus_13552#0      AGAATTCCCTACAGGGAAGGCATCTCTTGATGGAGTGTCTAAATGCATTGGTGA--TGCC 538
consensus_13552#2      ----------------------------------------------GTTCCGTC--CGGA 12
consensus_13552#3      ------------------------------------------------------------
consensus_13552#1      TTGGAATTTTCTACTGGGAAGGCATCTGTTTACGAAGTATCCAAGTGTTCAGGCGATGCA 342
consensus_13552#4      ------------------------------------------------------------
                                                                                   

consensus_13552#0      TTTCTAGTCACCGTTCGTAATAAGAAGAGAGTAGGGTATACCTATGAACTAAGCTTGAAA 598
consensus_13552#2      TTCCGGTCGACCACGCGT--CCGGAAGAGAGTAGGGTATACCTATGAACTAAGCTTGAAA 70
consensus_13552#3      ------------------------------------------------------------
consensus_13552#1      TTTCTGGTCACTGTCCGTAATAAGAAGAGAGTAGGCTATACTTATGAGCTGGGCTTAAAA 402
consensus_13552#4      ------------------------------------------------------------
                                                                                   

consensus_13552#0      TTTAAGGGTGAATGGTTAATTAAAGAAGAAAAGATGAAGGTCAAAGGCCA-TCTGGACAT 657
consensus_13552#2      TTTAAGGTTGAATGGTTAATTAAAGAAGAAAAGATGAAGGTCAAAGGCCACTCTGGACAT 130
consensus_13552#3      ------------------------------------------------------------
consensus_13552#1      TTTAAAGGTGAATGGTTAATTAAGGAAGAAAACAAGAAGGTGAAAGGCTA-TCTGGACAT 461
consensus_13552#4      ------------------------------------------------------------
                                                                                   

consensus_13552#0      TCCTGAGTTTTCTTTCGGTGAGCTGGAGGACTTGGAGGTAGAAGTAAGGTTTACCGATGA 717
consensus_13552#2      TCCTGAGTNTTCNTTTCGGTGACTGGAGGACTTGGAGGTAGAAGTAAGGTTTACCGATGA 190
consensus_13552#3      ------------------------------------------------------------
consensus_13552#1      TCCAGAATTTTCATTTGGTGAACTTGAAGACTTAGAGGTGCAAATAAGTTTTACCGACAT 521
consensus_13552#4      ------------------------------------------------------------
                                                                                   

consensus_13552#0      CAAGGGCCTCGCATCCGACG-ACAAGAGGCAGATTTGCAAGGACCTCAAGTCCTTCCTTT 776
consensus_13552#2      CAAGGGCCTCGCATCCGACGGACAAGAGGCAGATTTGCAAGGACCTCAAGTCCTTCCTTT 250
consensus_13552#3      ------------------------------------------------------------
consensus_13552#1      CAAGGACCTCTCGTCCGACA-ACAAGGCACAAATCAGCAAGGATTTGAAGTCGTTTCTTG 580
consensus_13552#4      ------------------------------------------------------------
                                                                                   

consensus_13552#0      CACCTATCCGGGAGAAACTGCGCGCATTCGAAGAAGAGCTCAAGGATAGGTAACAGAAAA 836
consensus_13552#2      CACCTATCCGGGAGAAACTGCGCGCATTCGAAGAAGAGCTCAAGGATAGGTAACAGAAAA 310
consensus_13552#3      --------------------------------------------------------AGAT 4
consensus_13552#1      CACCGATCCGGGAGAAACTGCGCAAGTTTGAAGAAGAGCTCAAGGATAGATAGCCAAGCT 640
consensus_13552#4      ------------------------------------------------------------
                                                                                   

consensus_13552#0      TGCCA-TCAAACCGGCAGCATCAGCAAG-GCAAGTAACTGCCCTGCTTTCCCAATATTAG 894
consensus_13552#2      TGCCA-TCAA-CCGGCAGCATCAGCAAG-GCAAGTAACTGCCCTGCTTTCCCAATATTAG 367
consensus_13552#3      TGAAG-CGCA--CGATAGTACGAACGCGCACAAATCCCGCCCNNNCTCTCCTCCTNCNCG 61
consensus_13552#1      TGCAAACCTGGTTGAAGCCATACGTATCAAAAGATGATGGCTTATCTATAGCCTTTTCAC 700
consensus_13552#4      ---------------------------------------GGTTTTTTTTTTAATTATTTT 21
                                                                     * *     *     

consensus_13552#0      CGTCGAATCATGTAACGT---TGTAACGGCAGCAGAATGATC--AT-CTGAGTTTGATAT 948
consensus_13552#2      CGTCGAATCATGTAAC-----TGTAACGGCAGCAGAATGATC--AT-CTGAGTTTGATAT 419
consensus_13552#3      AACCGCAGNACGCGAT-----TTNAAT--CGATCGATCGATCG-AT-CNNATCTCCCCNN 112
consensus_13552#1      GATCANAAGACTGGCTTAA-ACGTTACTGCNGTAAAGTNGTTCCATACCTTGNTGANTAT 759
consensus_13552#4      TGCCGGGTCTCGCCGCGAAGACGCCATCGGAGGCAGGCAGCCCGGT--CCAGCCCACCAA 79
                          *                     *                   *              

consensus_13552#0      TCATGCCTTGTTAGATCACTTAA-GGTCCCATATTTTT----CGCAATATCCGATCGCAT 1003
consensus_13552#2      TCATGCCTTGTTAGATCACTTAA-GGTCCCATATTTTT----CGCAATATCCGATCGCAT 474
consensus_13552#3      TTTCGNCTGANATCTNCAGNAAACGGCTNAATTTTNTC----CCCNNT------------ 156
consensus_13552#1      TCCCACCCCGTGTGGTCATTTGCCGATCAACTCATACCTGGGCCCCTGGTGAACTTACAG 819
consensus_13552#4      GCAGGTGAGGGGC----------------------------------------------- 92
                                                                                   

consensus_13552#0      GTAACTGCGACTGTATGTTGTAGACACTTTGTTGTAAACTCCGGTCGTCCAGATGAATAT 1063
consensus_13552#2      GTAACTGCGACTGTATGTTGTAGACACTTTGTTGTAAACTCCGGTCGTCCAGATGAATAT 534
consensus_13552#3      ------------------------------------------------------------
consensus_13552#1      ACCANTGTGGCCGAATTTTCTGAGCGAAATANTTT---CGCGGATTCTGATGGATTAGGC 876
consensus_13552#4      ------------------------------------------------------------
                                                                                   

consensus_13552#0      GAAGTTATGAACTGTCAAAAAAACAAAAAAAAA--------------------------- 1096
consensus_13552#2      GAAGTTATGAACTGTCAAAAAAAAAA---------------------------------- 560
consensus_13552#3      ------------------------------------------------------------
consensus_13552#1      CCGGCCTTGGCCAATTTAAAAAGGTGCGCCAGCTGTGGTTATATATATACCTGGGAATCC 936
consensus_13552#4      ------------------------------------------------------------
                                                                                   

consensus_13552#0      ------------------------------------------------------------
consensus_13552#2      ------------------------------------------------------------
consensus_13552#3      ------------------------------------------------------------
consensus_13552#1      CATCAACTCAAAAAAAAAAAAAAAAAAGGGGGCGGGCGGACGCCCTCCATATATAAACTC 996
consensus_13552#4      ------------------------------------------------------------
                                                                                   

consensus_13552#0      ------------------------------------------------------------
consensus_13552#2      ------------------------------------------------------------
consensus_13552#3      ------------------------------------------------------------
consensus_13552#1      CTCGGCCGTCCCTCCCCGAGGAGAGAGGCTCAAATTGGTACTCTCCCTCCTGGTATGTAG 1056
consensus_13552#4      ------------------------------------------------------------
                                                                                   

consensus_13552#0      -------------------------------
consensus_13552#2      -------------------------------
consensus_13552#3      -------------------------------
consensus_13552#1      TAGGAGGGCGCGCCCCCCCCTCCAAAGGGGT 1087
consensus_13552#4      -------------------------------
                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)