cluster # 13555

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Oryza sativa
cluster # 13555 cluster # 13555 Sequences # 13 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13555#0 length = 1687 sequences # 10
consensus_13555#1 length = 817 sequences # 1

consensus_13555#2 length = 226 sequences # 1
consensus_13555#3 length = 178 sequences # 1

consensusID : consensus_13555#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1687
fasta sequence

                              [CTTCGCTTTAAATTTTGTGGTAGATTTTTGTCTCCTTCGCTCTCCACGCTACCGCCTCGCCGTGCCGGAGCCCGGGCGTTCCCCGCCGCCGAGAACCTCCGCCTCCGCCTCCATCTCCTCCGCCGCCGCCGCAGATGGATCGGGAAGAAGTGACGGAGTTCCTCGGCCAGGTGCCCCTCCTGCAGTGCCTCCCCAGCTCCTCCATCCGCAGGATCGCCGACGCCGTCCTGGTGAAGCGCTACGAACCTGGTGGTTACGTTGCTCGTGAAGGTGACCCTGTAGATGGCCTTTACATCATATTGGATGGGCAGGCTGAGGTTTCAGCTCCTGCAAACACAGAAGAAGAAAACCGCCCTGACTATGTGTTAAATAAGTATGACTACTTTGGTTATGGAACCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCAAAGCTGACCTGCTTCGTATTGCCAAATCAATATGGACACTTGTTGCAACCAAAGACCATTTGGAGTGCAGAAGAGACACCTGAGAACCATTCTTTGCTAGAACAAATTTTGCACTTAGAGCCATTGGAGGTCGATATCTTCCGTGGGTTTACTTTGCCAGGAGCTCCGACTTTTAGGCAAGTTTTTGGAGGACAGTTGATAGGACAGGCACTAGCAGCAGCATCCAAGACCGTTGACTGCCTAAAAGCGGTGCACAGTTTGCACGCAATTTTCCTTATCGCAGGAGACAAGAATTTGCCAATAATATATCAGGTTCATCGGGCGCGCGATGGAACAAGCTTTGCCACCAGAAAAGTGGAGGCAAAGCAAAAGGGCCTTGTCATTTTCACCTTGATTGCTTCATTCCAGAAAGACGAATTAGGGTTTGAGCATCAAGCTGCAATCATGCCTGATGTTCCTCCTCCAGAAGAGCTCCTGAATCTGGAAGAGATACGGGAAAGAAGACTTACTGATCCTCGCTTCCCAATGCAATATAGGAACTCAGCTGCCAAGAAAAAGTTCGTACCTTGGCCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAGCTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAGGTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAATCCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGATCGACAGCCCATCTGCACACGGTGGGC-GGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAGGACAACCGTCACAAACCCCAAGGCCAAAGCTTTGAGAGGTGCAGAAGAGCAGTATTATCGTTTCATTTTTGGCACTTTCACAGTTATTTTCCTTTTCAATGGAAGTCTATAACACGTAGACGTGAAGCCGAAGTATAGCATACTGCATATATGTAGCAAGAAAAAACGATGGTAAAACT-GGTTCTGTAATTCACGAACAGCTTACTGACATACCACGTATGTATTGGATCGGGAAAAATAAGCGAAGAACTTGGTATCGC-TTTTTTTTTATCTCAATAAAGCCTTCAATTATTTCAAAAAA]

[+] EMBL AK102197             [CTTCGCTTTAAATTTTGTGGTAGATTTTTGTCTCCTTCGCTCTCCACGCTACCGCCTCGCCGTGCCGGAGCCCGGGCGTTCCCCGCCGCCGAGAACCTCCGCCTCCGCCTCCATCTCCTCCGCCGCCGCCGCAGATGGATCGGGAAGAAGTGACGGAGTTCCTCGGCCAGGTGCCCCTCCTGCAGTGCCTCCCCAGCTCCTCCATCCGCAGGATCGCCGACGCCGTCCTGGTGAAGCGCTACGAACCTGGTGGTTACGTTGCTCGTGAAGGTGACCCTGTAGATGGCCTTTACATCATATTGGATGGGCAGGCTGAGGTTTCAGCTCCTGCAAACACAGAAGAAGAAAACCGCCCTGACTATGTGTTAAATAAGTATGACTACTTTGGTTATGGAACCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCAAAGCTGACCTGCTTCGTATTGCCAAATCAATATGGACACTTGTTGCAACCAAAGACCATTTGGAGTGCAGAAGAGACACCTGAGAACCATTCTTTGCTAGAACAAATTTTGCACTTAGAGCCATTGGAGGTCGATATCTTCCGTGGGTTTACTTTGCCAGGAGCTCCGACTTTTAGGCAAGTTTTTGGAGGACAGTTGATAGGACAGGCACTAGCAGCAGCATCCAAGACCGTTGACTGCCTAAAAGCGGTGCACAGTTTGCACGCAATTTTCCTTATCGCAGGAGACAAGAATTTGCCAATAATATATCAGGTTCATCGGGCGCGCGATGGAACAAGCTTTGCCACCAGAAAAGTGGAGGCAAAGCAAAAGGGCCTTGTCATTTTCACCTTGATTGCTTCATTCCAGAAAGACGAATTAGGGTTTGAGCATCAAGCTGCAATCATGCCTGATGTTCCTCCTCCAGAAGAGCTCCTGAATCTGGAAGAGATACGGGAAAGAAGACTTACTGATCCTCGCTTCCCAATGCAATATAGGAACTCAGCTGCCAAGAAAAAGTTCGTACCTTGGCCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAGCTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAGGTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAATCCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGATCGACAGCCCATCTGCACACGGTGGGC GGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAGGACAACCGTCACAAACCCCAAGGCCAAAGCTTTGAGAGGTGCAGAAGAGCAGTATTATCGTTTCATTTTTGGCACTTTCACAGTTATTTTCCTTTTCAATGGAAGTCTATAACACGTAGACGTGAAGCCGAAGTATAGCATACTGCATATATGTAGCAAGAAAAAACGATGGTAAAACT GGTTCTGTAATTCACGAACAGCTTACTGACATACCACGTATGTATTGGATCGGGAAAAATAAGCGAAGAACTTGGTATCGC TTTTTTTTTATCTCAATAAAGCCTT                ]
[+] EMBL AK061440             [    GCTTTAAATTTTGTGGTAGATTTTTGTCTCCTTCGCTCTCCACGCTACCGCCTCGCCGTGCCGGAGCCCGGGCGTTCCCCGCCGCCGAGAACCTCCGCCTCCGCCTCCATCTCCTCCGCCGCCGCCGCAGATGGATCGGGAAGAAGTGACGGAGTTCCTCGGCCAGGTGCCCCTCCTGCAGTGCCTCCCCAGCTCCTCCATCCGCAGGATCGCCGACGCCGTCCTGGTGAAGCGCTACGAACCTGGTGGTTACGTTGCTCGTGAAGGTGACCCTGTAGATGGCCTTTACATCATATTGGATGGGCAGGCTGAGGTTTCAGCTCCTGCAAACACAGAAGAAGAAAACCGCCCTGACTATGTGTTAAATAAGTATGACTACTTTGGTTATGGAACCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCAAAGCTGACCTGCTTCGTATTGCCAAATCAATATGGACACTTGTTGCAACCAAAGACCATTTGGAGTGCAGAAGAGACACCTGAGAACCATTCTTTGCTAGAACAAATTTTGCACTTAGAGCCATTGGAGGTCGATATCTTCCGTGGGTTTACTTTGCCAGGAGCTCCGACTTTTAGGCAAGTTTTTGGAGGACAGTTGATAGGACAGGCACTAGCAGCAGCATCCAAGACCGTTGACTGCCTAAAAGCGGTGCACAGTTTGCACGCAATTTTCCTTATCGCAGGAGACAAGAATTTGCCAATAATATATCAGGTTCATCGGGCGCGCGATGGAACAAGCTTTGCCACCAGAAAAGTGGAGGCAAAGCAAAAGGGCCTTGTCATTTTCACCTTGATTGCTTCATTCCAGAAAGACGAATTAGGGTTTGAGCATCAAGCTGCAATCATGCCTGATGTTCCTCCTCCAGAAGAGCTCCTGAATCTGGAAGAGATACGGGAAAGAAGACTTACTGATCCTCGCTTCCCAATGCAATATAGGAACTCAGCTGCCAAGAAAAAGTTCGTACCTTGGCCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAGCTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAGGTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAATCCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGATCGACAGCCCATCTGCACACGGTGGGC GGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAGGACAACCGTCACAAACCCCAAGGCCAAAGCTTTGAGAGGTGCAGAAGAGCAGTATTATCGTTTCATTTTTGGCACTTTCACAGTTATTTTCCTTTTCAATGGAAGTCTATAACACGTAGACGTGAAGCCGAAGTATAGCATACTGCATATATGTAGCAAGAAAAAACGATGGTAAAACT GGTTCTGTAATTCACGAACAGCTTACTGACATACCACGTATGTATTGGATCGGGAAAAATAAGCGAAGAACTTGGTATCGC TTTTTTTTTATCTCAATAAAGCCTTCAATT           ]
[+] EMBL CF280710             [      TTTAAATTTTGTGGTAGATATTTGCCTCCTTCGCTCTCCACGCTACCGCCTCGCCGTGCCGGAGCCCGGGCGTTCCCCGCCGCCGAGAACCTCCGCCTCCGCCTCCATCTCCTCCGCCGCCGCCGCAGATGGATCGGGAAGAAGTGACGGTTTTTCTCGGCCAGGTGCCCCTCCTGCAGTGCCTCCCCAGCTCCT TTTCTTTAGGATCGCCGACGCCGTCCTGGTGAAGCGCTACGAACCTGGTGGTTACGTTGCTCGTGAAGGTGACCCTGTAGATGGCCTTTACATCATATTGGATGGGCAGGCTGAGGTTTCAGCTCCTGCAAACACAGAAGAAGAAAACCGCCCTGACTATGTGTTAAATAAGTATGACTACTTTGGTTATGGAACCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCAAAGCTGACCTGCTTCGTATTGCCAAATCAATATGGACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB623494             [                                                                                                                                                                                                                                                                         cGAATGTGACACAGTAGATGGACTATACATCATATTGGATGGGCAGGCTGAGGATTCAGCTCCTTCATATACCTAAAAAGAAAACCGCCCTGACTATGTGTTAAATAAATATGACTACTTTGGTTATGGAACCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCAAAGCTGACCTGCTTCGTATTGCCAAATCAATATGGACACTTGTTGCAACCAAAGACCATTTGGAGTGCAGAAGAGACACCTGAGAACCATTCTTTGCTAGAACAAATTTTGCACTTAGAGCCATTGGAGGTCGATATCTTCCATGGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK061940             [                                                                                                                                                                                                                                                                                                                  GGCAGGCTGAGGTTTCAGCTCCTGCAAACACAGAAGAAGAAAACCGCCCTGACTATGTGTTAAATAAGTATGACTACTTTGGTTATGGAACCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCAAAGCTGACCTGCTTCGTATTGCCAAATCAATATGGACACTTGTTGCAACCAAAGACCATTTGGAGTGCAGAAGAGACACCTGAGAACCATTCTTTGCTAGAACAAATTTTGCACTTAGAGCCATTGGAGGTCGATATCTTCCGTGGGTTTACTTTGCCAGGAGCTCCGACTTTTAGGCAAGTTTTTGGAGGACAGTTGATAGGACAGGCACTAGCAGCAGCATCCAAGACCGTTGACTGCCTAAAAGCGGTGCACAGTTTGCACGCAATTTTCCTTATCGCAGGAGACAAGAATTTGCCAATAATATATCAGGTTCATCGGGCGCGCGATGGAACAAGCTTTGCCACCAGAAAAGTGGAGGCAAAGCAAAAGGGCCTTGTCATTTTCACCTTGATTGCTTCATTCCAGAAAGACGAATTAGGGTTTGAGCATCAAGCTGCAATCATGCCTGATGTTCCTCCTCCAGAAGAGCTCCTGAATCTGGAAGAGATACGGGAAAGAAGACTTACTGATCCTCGCTTCCCAATGCAATATAGGAACTCAGCTGCCAAGAAAAAGTTCGTACCTTGGCCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAGCTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAGGTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAATCCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGATCGACAGCCCATCTGCACACGGTGGGC GGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAGGACAACCGTCACAAACCCCAAGGCCAAAGCTTTGAGAGGTGCAGAAGAGCAGTATTATCGTTTCATTTTTGGCACTTTCACAGTTATTTTCCTTTTCAATGGAAGTCTATAACACGTAGACGTGAAGCCGAAGTATAGCATACTGCATATATGTAGCAAGAAAAAACGATGGTAAAACT GGTTCTGTAATTCACGAACAGCTTACTGACATACCACGTATGTATTGGATCGGGAAAAATAAGCGAAGAACTTGGTATCGC TTTTTTTTTATCTCAATAAAGCCTT                ]
[-] EMBL CB667201             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGAGCATCAAGCTGCAATCATGCCTGATGTTCCTCCTCCAGAAGAGCTCCTGAATCTGGAAGAGATACGGGAAAGAAGACTTACTGATCCTCGCTTCCCAATGCAATATAGGAACTCAGCTGCCAAGAAAAAGTTCGTACCTTGGCCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAGCTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGCACTGCATAGGTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAATCCTCATAGGGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGATCGACAGCCCATCTGCACACGGTGGGC GGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAGGACAACCGTCACAAACCCCAAGGCCAAAGCTTTGAGAGGTGCAGAAGAGCAGTATTATCGTTTCATTTTTGGCACTTTCACAGTTATTTTCCTTTTCAATGGAAGTCTATAACACGTAGACGTGAAGCCGAAGTATAGCATACTGCATATATGTAGCAAGAAAAAACGATGGTAAAACT GGTTCTGTAATTCACGAACAGCTTACTGACATACCACGTATGTATTGGATCGGGAAAAATAAGCGAAGAACTTGGTATCGC  TTTTTTTTATCT                            ]
[+] EMBL CF309946             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGCAATCATGCCTGATGTTCCTCCTCCAGAAGAGCTCCTGAATCTGGAAGAGATACGGGAAAGAAGACTTACTGATCCTCGCTTCCCAATGCAATATAGGAACTCAGCTGCCAAGAAAAAGTTCGTACCTTGGCCCATAGAAATGAGGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAGCTTAAATTATTGGTTTAGAGCCAGAGGAAAACTTTCTGATGATCCAGTACTGCATAGGTGTGTTGTAGCATATGCTTCGGATCTACTATATTCTGGTGTCAGCCTAAATCCTCATA GGAGAAGGGTCTGAAGACATACTCACTCAGTCTTGATCACTCGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGATCGACAGCCCATCTGCACACGGTGGGCGGGGGTTTTGTCACAGGGCGAATGTTCAACCGACAAGGAGAGCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTANGAGGGCGAAGACGCCAGGACAACCGTCACAAACCCCAAGGCCAAAGCTTTGAGAGGTGCAGAAGAGCAGTATTATCGTTTCATTTTTGGCACTTTCACAGTTATTTTCCTTTTCAATGGAAGTCTATAACACGTAGACGTGAAGCCGAAGTATAGCATACTGCATATATGTAGCAAGAAAAAACGATGGTAAAACTGGGTTCTGTAATTCACGA                                                                                                          ]
[-] EMBL CB623495             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AGAGCCAGAGGAAAACTTTGTGAGGATCCAGCACGGCATAGGTGTGTGGTAGCATATGCTTCGGATGTACTATATTGGGGGGTCAGCCTAAATCCTCATAGGGAGAAGGGTCGGAAGGCATACTCACTCAGTCTTGATCACTGGATTGGGTTCCTCAAGCCTGTGAAAGCTGATGATTGGCTTTTATATGTGATCGGCAGCCCATCTGCACACGGTGGGC GGGGGTTTGTTACAGGGGGAATGTTCAGCCGACAAGGAGAGCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGGGAAGACGCCAGGACAACCGTCACAAACCCCAAGGCCAAAGCTTTGAGAGGTGCAGAAGAGCAGTATTATCGTTTCATTTTTGGCA ATTCACAGTTATTTTCCTTTTCAATGGAAGTCTATAACACGTAGACGTGAAGCCGAAGTATAGCATGCTGCATATATGTAGCAAGAAAAGACGATGGTAAAACT GGTTCTGTAATTCACGAACAGCTTAGTGACATACCACGTAT TATTGGATCGGCAAAAGGGAGCAAAGAACTTGGTA                                              ]
[+] EMBL BQ906059             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGATTGGCTTTTATATGTGATCGACAGCCCATCTGCACACGGTGGGC GGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAGGACAACCGTCACAAACCCCAAGGCCAAAGCTTTGAGAGGTGCAGAAGAGCAGTATTATCGTTTCATTTTTGGCA ATTCACAGTTATTTTCCTTTTCAATGGAAGTCTATAACACGTAGACGTGAAGCCGAAGTATAGCATACTGCATATATGTAGCAAGAAAAAACGATGGTAAAACT GGTTCTGTAATTCACGAACAGCTTACTGACATACCACGTATGTATTGGATCGGGAAAAATAAGCGAAGAACTTGGTATCGC NTTTTTTTTATCTCAAAAAAaaaa                 ]
[-] EMBL CF280709             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CCAAAGCTTTGAGAGGTGCAGAAGAGCAGTATTATCGTTTCATTTTTGGCACTTTCACAGTTATTTTCCTTTTCAATGGAAGTCTATAACACGTAGACGTGAAGCCGAAGTATAGCATACTGCATATATGTAGCAAGAAAAAACGATGGTAAAACT GGTTCTGTAATTCACGAACAGCTTACTGACATACCACGTATGTATTGGATCGGGAAAAATAAGCGAAGAACATGGTATCGCTTTTTTTTTTATCTCAATAAAGCCTTCAATTATTTCAAAAAA]




>consensus_13555#0
CTTCGCTTTAAATTTTGTGGTAGATTTTTGTCTCCTTCGCTCTCCACGCTACCGCCTCGC
CGTGCCGGAGCCCGGGCGTTCCCCGCCGCCGAGAACCTCCGCCTCCGCCTCCATCTCCTC
CGCCGCCGCCGCAGATGGATCGGGAAGAAGTGACGGAGTTCCTCGGCCAGGTGCCCCTCC
TGCAGTGCCTCCCCAGCTCCTCCATCCGCAGGATCGCCGACGCCGTCCTGGTGAAGCGCT
ACGAACCTGGTGGTTACGTTGCTCGTGAAGGTGACCCTGTAGATGGCCTTTACATCATAT
TGGATGGGCAGGCTGAGGTTTCAGCTCCTGCAAACACAGAAGAAGAAAACCGCCCTGACT
ATGTGTTAAATAAGTATGACTACTTTGGTTATGGAACCAATAGTTCTGTGCATCAAGTAA
ATGTTATTGCAGTATCAAAGCTGACCTGCTTCGTATTGCCAAATCAATATGGACACTTGT
TGCAACCAAAGACCATTTGGAGTGCAGAAGAGACACCTGAGAACCATTCTTTGCTAGAAC
AAATTTTGCACTTAGAGCCATTGGAGGTCGATATCTTCCGTGGGTTTACTTTGCCAGGAG
CTCCGACTTTTAGGCAAGTTTTTGGAGGACAGTTGATAGGACAGGCACTAGCAGCAGCAT
CCAAGACCGTTGACTGCCTAAAAGCGGTGCACAGTTTGCACGCAATTTTCCTTATCGCAG
GAGACAAGAATTTGCCAATAATATATCAGGTTCATCGGGCGCGCGATGGAACAAGCTTTG
CCACCAGAAAAGTGGAGGCAAAGCAAAAGGGCCTTGTCATTTTCACCTTGATTGCTTCAT
TCCAGAAAGACGAATTAGGGTTTGAGCATCAAGCTGCAATCATGCCTGATGTTCCTCCTC
CAGAAGAGCTCCTGAATCTGGAAGAGATACGGGAAAGAAGACTTACTGATCCTCGCTTCC
CAATGCAATATAGGAACTCAGCTGCCAAGAAAAAGTTCGTACCTTGGCCCATAGAAATGA
GGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAGCTTAAATTATTGGTTTAGAGCCA
GAGGAAAACTTTCTGATGATCCAGCACTGCATAGGTGTGTTGTAGCATATGCTTCGGATC
TACTATATTCTGGTGTCAGCCTAAATCCTCATAGGGAGAAGGGTCTGAAGACATACTCAC
TCAGTCTTGATCACTCGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTAT
ATGTGATCGACAGCCCATCTGCACACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCA
ACCGACAAGGAGAGCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGA
CGCCAGGACAACCGTCACAAACCCCAAGGCCAAAGCTTTGAGAGGTGCAGAAGAGCAGTA
TTATCGTTTCATTTTTGGCACTTTCACAGTTATTTTCCTTTTCAATGGAAGTCTATAACA
CGTAGACGTGAAGCCGAAGTATAGCATACTGCATATATGTAGCAAGAAAAAACGATGGTA
AAACTGGTTCTGTAATTCACGAACAGCTTACTGACATACCACGTATGTATTGGATCGGGA
AAAATAAGCGAAGAACTTGGTATCGCTTTTTTTTTATCTCAATAAAGCCTTCAATTATTT
CAAAAAA

consensusID : consensus_13555#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 817
fasta sequence

                              [CCAGGTGCCCCTCCTGCAGTGCCTCCCCAGCTCCTCCATCCGCAGGATCGCCGACGCCGTCCTGGTGAAGCGCTACGAACCTGGTGGTTACGTTGCTCGTGAAGGTGACCCTGTAGATGGCCTTTACATCATATTGGATGGGCAGGCTGAGGTTTCAGCTCCTGCAAACACAGAAGAAGAAAACCGCCCTGACTATGTGTTAAATAAGTATGACTACTTTGGTTATGGAACCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCAAAGGTTCCTTGTTCATGTTTCTATTTTTAATAACAGTATAAGCTGATGGTGTCCCTACTGTAATAATAAATATCTTCTGGCTTCAGCTTATTGTTAGTATCCTATTTTGCAGCTGACCTGCTTCGTATTGCCAAATCAATATGGACACTTGTTGCAACCAAAGACCATTTGGAGTGCAGAAGAGACACCTGAGAACCATTCTTTGCTAGAACAAATTTTGCACTTAGAGCCATTGGAGGTCGATATCTTCCGTGGGTTTACTTTGCCAGGAGCTCCGACTTTTAGGCAAGTTTTTGGAGGACAGTTGATAGGACAGGCACTAGCAGCAGCATCCAAGACCGTTGACTGCCTAAAAGCGGTGCACAGTTTGCACGCAATTTTCCTTATCGCAGGAGACAAGAATTTGCCAATAATATATCAGGTTCATCGGGCGCGCGATGGAACAAGCTTTGCCACCAGAGAAGTGGAGGCAAAGCAAAAGGGCCTTGTCATTTTCACCTTGATTGCTTCATTCCAGAAAGACGAATTAGGGTTTGAGCATCAAGC]

[+] EMBL CB667200             [CCAGGTGCCCCTCCTGCAGTGCCTCCCCAGCTCCTCCATCCGCAGGATCGCCGACGCCGTCCTGGTGAAGCGCTACGAACCTGGTGGTTACGTTGCTCGTGAAGGTGACCCTGTAGATGGCCTTTACATCATATTGGATGGGCAGGCTGAGGTTTCAGCTCCTGCAAACACAGAAGAAGAAAACCGCCCTGACTATGTGTTAAATAAGTATGACTACTTTGGTTATGGAACCAATAGTTCTGTGCATCAAGTAAATGTTATTGCAGTATCAAAGGTTCCTTGTTCATGTTTCTATTTTTAATAACAGTATAAGCTGATGGTGTCCCTACTGTAATAATAAATATCTTCTGGCTTCAGCTTATTGTTAGTATCCTATTTTGCAGCTGACCTGCTTCGTATTGCCAAATCAATATGGACACTTGTTGCAACCAAAGACCATTTGGAGTGCAGAAGAGACACCTGAGAACCATTCTTTGCTAGAACAAATTTTGCACTTAGAGCCATTGGAGGTCGATATCTTCCGTGGGTTTACTTTGCCAGGAGCTCCGACTTTTAGGCAAGTTTTTGGAGGACAGTTGATAGGACAGGCACTAGCAGCAGCATCCAAGACCGTTGACTGCCTAAAAGCGGTGCACAGTTTGCACGCAATTTTCCTTATCGCAGGAGACAAGAATTTGCCAATAATATATCAGGTTCATCGGGCGCGCGATGGAACAAGCTTTGCCACCAGAGAAGTGGAGGCAAAGCAAAAGGGCCTTGTCATTTTCACCTTGATTGCTTCATTCCAGAAAGACGAATTAGGGTTTGAGCATCAAGC]




>consensus_13555#1
CCAGGTGCCCCTCCTGCAGTGCCTCCCCAGCTCCTCCATCCGCAGGATCGCCGACGCCGT
CCTGGTGAAGCGCTACGAACCTGGTGGTTACGTTGCTCGTGAAGGTGACCCTGTAGATGG
CCTTTACATCATATTGGATGGGCAGGCTGAGGTTTCAGCTCCTGCAAACACAGAAGAAGA
AAACCGCCCTGACTATGTGTTAAATAAGTATGACTACTTTGGTTATGGAACCAATAGTTC
TGTGCATCAAGTAAATGTTATTGCAGTATCAAAGGTTCCTTGTTCATGTTTCTATTTTTA
ATAACAGTATAAGCTGATGGTGTCCCTACTGTAATAATAAATATCTTCTGGCTTCAGCTT
ATTGTTAGTATCCTATTTTGCAGCTGACCTGCTTCGTATTGCCAAATCAATATGGACACT
TGTTGCAACCAAAGACCATTTGGAGTGCAGAAGAGACACCTGAGAACCATTCTTTGCTAG
AACAAATTTTGCACTTAGAGCCATTGGAGGTCGATATCTTCCGTGGGTTTACTTTGCCAG
GAGCTCCGACTTTTAGGCAAGTTTTTGGAGGACAGTTGATAGGACAGGCACTAGCAGCAG
CATCCAAGACCGTTGACTGCCTAAAAGCGGTGCACAGTTTGCACGCAATTTTCCTTATCG
CAGGAGACAAGAATTTGCCAATAATATATCAGGTTCATCGGGCGCGCGATGGAACAAGCT
TTGCCACCAGAGAAGTGGAGGCAAAGCAAAAGGGCCTTGTCATTTTCACCTTGATTGCTT
CATTCCAGAAAGACGAATTAGGGTTTGAGCATCAAGC

consensusID : consensus_13555#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 226
fasta sequence

                              [CGCCGGGCCGGAGCCCGGGCGTTCCCCGCCGCCGAGAACCTCCGCCTCCGCCTCCATCTCCTTCGCCGCCGCCGCAAATGGATCGGGAACAAATGACGGAGTTCCTCGGGCAGGTGCCCCTCCTGCAGAGCCTTCCCAGCTTCTACGTCCGGAAGATCGCCTAAGCCGTCCCGGTGAAGCGCTACCAACGTGCTGGTTACGTAGCTGGAGAAGAGACCCTGTCAAT]

[+] EMBL CF317930             [CGCCGGGCCGGAGCCCGGGCGTTCCCCGCCGCCGAGAACCTCCGCCTCCGCCTCCATCTCCTTCGCCGCCGCCGCAAATGGATCGGGAACAAATGACGGAGTTCCTCGGGCAGGTGCCCCTCCTGCAGAGCCTTCCCAGCTTCTACGTCCGGAAGATCGCCTAAGCCGTCCCGGTGAAGCGCTACCAACGTGCTGGTTACGTAGCTGGAGAAGAGACCCTGTCAAT]




>consensus_13555#2
CGCCGGGCCGGAGCCCGGGCGTTCCCCGCCGCCGAGAACCTCCGCCTCCGCCTCCATCTC
CTTCGCCGCCGCCGCAAATGGATCGGGAACAAATGACGGAGTTCCTCGGGCAGGTGCCCC
TCCTGCAGAGCCTTCCCAGCTTCTACGTCCGGAAGATCGCCTAAGCCGTCCCGGTGAAGC
GCTACCAACGTGCTGGTTACGTAGCTGGAGAAGAGACCCTGTCAAT

consensusID : consensus_13555#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 178
fasta sequence

                              [AGACGTGAAGCCGAAGTATAGCATACTGCATATATGTAGCAAGAAAAAACGATGGTAAAACTGGTTCTGTAATTCACGAACAGCTTACTGACATACCACGTATGTATTGGATCGGGAAAAATAAGCGAAGAACTTGGTATCGCTTTTTTTTTATCTCAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL OSS1528A             [AGACGTGAAGCCGAAGTATAGCATACTGCATATATGTAGCAAGAAAAAACGATGGTAAAACTGGTTCTGTAATTCACGAACAGCTTACTGACATACCACGTATGTATTGGATCGGGAAAAATAAGCGAAGAACTTGGTATCGCTTTTTTTTTATCTCAAAAAAAAAAAAAAAAAAAAA]




>consensus_13555#3
AGACGTGAAGCCGAAGTATAGCATACTGCATATATGTAGCAAGAAAAAACGATGGTAAAA
CTGGTTCTGTAATTCACGAACAGCTTACTGACATACCACGTATGTATTGGATCGGGAAAA
ATAAGCGAAGAACTTGGTATCGCTTTTTTTTTATCTCAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13555#0      CTTCGCTTTAAATTTTGTGGTAGATTTTTGTCTCCTTCGCTCTCCACGCTACCGCCTCGC 60
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      ------------------------------------------------------------
                                                                                   

consensus_13555#0      CGTGCCGGAGCCCGGGCGTTCCCCGCCGCCGAGAACCTCCGCCTCCGCCTCCATCTCCTC 120
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      ------------------------------------------------------------
                                                                                   

consensus_13555#0      CGCCGCCGCCGCAGATGGATCGGGAAGAAGTGACGGAGTTCCTCGGCCAGGTGCCCCTCC 180
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      ------------------------------------------------------------
                                                                                   

consensus_13555#0      TGCAGTGCCTCCCCAGCTCCTCCATCCGCAGGATCGCCGACGCCGTCCTGGTGAAGCGCT 240
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      ------------------------------------------------------------
                                                                                   

consensus_13555#0      ACGAACCTGGTGGTTACGTTGCTCGTGAAGGTGACCCTGTAGATGGCCTTTACATCATAT 300
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      ------------------------------------------------------------
                                                                                   

consensus_13555#0      TGGATGGGCAGGCTGAGGTTTCAGCTCCTGCAAACACAGAAGAAGAAAACCGCCCTGACT 360
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      ------------------------------------------------------------
                                                                                   

consensus_13555#0      ATGTGTTAAATAAGTATGACTACTTTGGTTATGGAACCAATAGTTCTGTGCATCAAGTAA 420
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      ------------------------------------------------------------
                                                                                   

consensus_13555#0      ATGTTATTGCAGTATCAAAGCTGACCTGCTTCGTATTGCCAAATCAATATGGACACTTGT 480
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      ------------------------------------------------------------
                                                                                   

consensus_13555#0      TGCAACCAAAGACCATTTGGAGTGCAGAAGAGACACCTGAGAACCATTCTTTGCTAGAAC 540
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      ------------------------------------------------------------
                                                                                   

consensus_13555#0      AAATTTTGCACTTAGAGCCATTGGAGGTCGATATCTTCCGTGGGTTTACTTTGCCAGGAG 600
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      ------------------------------------------------------------
                                                                                   

consensus_13555#0      CTCCGACTTTTAGGCAAGTTTTTGGAGGACAGTTGATAGGACAGGCACTAGCAGCAGCAT 660
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      ------------------------------------------------------------
                                                                                   

consensus_13555#0      CCAAGACCGTTGACTGCCTAAAAGCGGTGCACAGTTTGCACGCAATTTTCCTTATCGCAG 720
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      ------------------------------------------------------------
                                                                                   

consensus_13555#0      GAGACAAGAATTTGCCAATAATATATCAGGTTCATCGGGCGCGCGATGGAACAAGCTTTG 780
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      ------------------------------------------------------------
                                                                                   

consensus_13555#0      CCACCAGAAAAGTGGAGGCAAAGCAAAAGGGCCTTGTCATTTTCACCTTGATTGCTTCAT 840
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      ------------------------------------------------------------
                                                                                   

consensus_13555#0      TCCAGAAAGACGAATTAGGGTTTGAGCATCAAGCTGCAATCATGCCTGATGTTCCTCCTC 900
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      -----------------------------------------------CCAGGTGCCCCTC 13
                                                                                   

consensus_13555#0      CAGAAGAGCTCCTGAATCTGGAAGAGATACGGGAAAGAAGACTTACTGATCCTCGCTTCC 960
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      CTGCAGTGCCTCCCCAGCTCCTCCATCCGCAGGATCGCCGACGCCGTCCTGGTGAAGCGC 73
                                                                                   

consensus_13555#0      CAATGCAATATAGGAACTCAGCTGCCAAGAAAAAGTTCGTACCTTGGCCCATAGAAATGA 1020
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      TACGAACCTGGTGGTTACGTTGCTCGTGAAGGTGACCCTGTAGATGGCCTTTACATCATA 133
                                                                                   

consensus_13555#0      GGTTTTGTGAAGATTCAGCATCTCAACATAAACCAAGCTTAAATTATTGGTTTAGAGCCA 1080
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      TTGGATGGGCAGGCTGAGGTTTCAGCTCCTGCAAACACAGAAGAAGAAAACCGCCCTGAC 193
                                                                                   

consensus_13555#0      GAGGAAAACTTTCTGATGATCCAGCACTGCATAGGTGTGTTGTAGCATATGCTTCGGATC 1140
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      TATGTGTTAAATAAGTATGACTACTTTGGTTATGGAACCAATAGTTCTGTGCATCAAGTA 253
                                                                                   

consensus_13555#0      TACTATATTCTGGTGTCAGCCTAAATCCTCATAGGGAGAAGGGTCTGAAGACATACTCAC 1200
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      AATGTTATTGCAGTATCAAAGGTTCCTTGTTCATGTTTCTATTTTTAATAACAGTATAAG 313
                                                                                   

consensus_13555#0      TCAGTCTTGATCACTCGATTTGGTTCCACAAGCCTGTGAAAGCTGATGATTGGCTTTTAT 1260
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      CTGATGGTGTCCCTACTGTAATAATAAATATCTTCTGGCTTCAGCTTATTGTTAGTATCC 373
                                                                                   

consensus_13555#0      ATGTGATCGACAGCCCATCTGCACACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCA 1320
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      TATTTTGCAGCTGACCTGCTTCGTATTGCCAAATCAATATGGACACTTGTTGCAACCAAA 433
                                                                                   

consensus_13555#0      ACCGACAAGGAGAGCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGA 1380
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      GACCATTTGGAGTGCAGAAGAGACACCTGAGAACCATTCTTTGCTAGAACAAATTTTGCA 493
                                                                                   

consensus_13555#0      CGCCAGGACAACCGTCACAAACCCCAAGGCCAAAGCTTTGAGAGGTGCAGAAGAGCAGTA 1440
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ------------------------------------------------------------
consensus_13555#1      CTTAGAGCCATTGGAGGTCGATATCTTCCGTGGGTTTACTTTGCCAGGAGCTCCGACTTT 553
                                                                                   

consensus_13555#0      TTATCGTTTCATTTTTGGCACTTTCACAGTTATTTTCCTTTTCAATGGAAGTCTATAACA 1500
consensus_13555#3      ------------------------------------------------------------
consensus_13555#2      ----------------------------------CGCCGGGCCGGAGCCCGGGCGTTCCC 26
consensus_13555#1      TAGGCAAGTTTTTGGAGGACAGTTGATAGGACAGGCACTAGCAGCAGCATCCAAGACCGT 613
                                                                                   

consensus_13555#0      CGTAGACGTGAAGCCGAAGTATAGCATACT-----GCATATATGTAGCAAGAAAAAACGA 1555
consensus_13555#3      ---AGACGTGAAGCCGAAGTATAGCATACT-----GCATATATGTAGCAAGAAAAAACGA 52
consensus_13555#2      CGCCGCCGAGAACCTCCGCCTCCGCCTCCA-----TCTCCTTCGCCGCCGCCGCAAATGG 81
consensus_13555#1      TGACTGCCTAAAAGCGGTGCACAGTTTGCACGCAATTTTCCTTATCGCAGGAGACAAGAA 673
                             *   **           *  * *                 **       **   

consensus_13555#0      TGGTAAAACTGGTTCTGTAATTCA-CGAACAG-----CTTACTG-ACATACCACGTATGT 1608
consensus_13555#3      TGGTAAAACTGGTTCTGTAATTCA-CGAACAG-----CTTACTG-ACATACCACGTATGT 105
consensus_13555#2      ATCGGGAACAAATGACGGAGTTCCTCGGGCAGGTGCCCCTCCTGCAGAGCCTTCCCAGCT 141
consensus_13555#1      TTTGCCAATAATATATCAGGTTCATCGGGCGC-----GCGATGGAACAAGCTTTGCCACC 728
                             **            ***  **  *             * * *  *         

consensus_13555#0      ATTGGATCGGGA--AAAATAAGCGAAGAA-CTTGGTATCGCTTT---TTTTTTATCTCAA 1662
consensus_13555#3      ATTGGATCGGGA--AAAATAAGCGAAGAA-CTTGGTATCGCTTT---TTTTTTATCTCAA 159
consensus_13555#2      TCTACGTCCGGA--AGATCGCCTAAGCCGTCCCGGTGAAGCGCT---ACCAACGTGCTGG 196
consensus_13555#1      AGAGAAGTGGAGGCAAAGCAAAAGGGCCTTGTCATTTTCACCTTGATTGCTTCATTCCAG 788
                                *    * *                  *    *  *          *     

consensus_13555#0      TAAAGCCTTCAATTATTTCAAAAAA----- 1687
consensus_13555#3      AAAA------AAAAAAAAAAAAAAA----- 178
consensus_13555#2      TTACGTAGCTGGAGAAGAGACCCTGTCAAT 226
consensus_13555#1      AAAGACGAATTAGGGTTTGAGCATCAAGC- 817
                         *                *