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Oryza sativa
cluster # 13556 cluster # 13556       Sequences # 13       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13556#0 length = 1095 sequences # 7  
consensus_13556#1 length = 778 sequences # 2  
consensus_13556#2 length = 608 sequences # 3  
consensus_13556#3 length = 258 sequences # 1  

consensusID : consensus_13556#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1095
fasta sequence
                              [CGCCTACCTCCACTCTCTCGCGCTCGCTCTCCAATGCCGCCACCAATGGCGCTCTCCATCTCCTCCACCGCCGCGGCGACCGCTCTCCTCCCGACTCTCCCGCCCTCGCGCTCGCGCCTGCGCGTCGCGCCGCGCAGGGCGGCGGCTCGGGTGGCGCGCGTGGTGTCGGCCGGATACGCCGCGGGGTTCTACGGCGGGGCGGCGGCTGCGGCCGGTGGCGAGAACGACGAGGTGGGGGATGAGGAGGGTTCGTCCTCGGGGTTCGGTGCTGGGCTAGGGATAGGAGGCGGTGGGCTTGGGATGTCGGCCGCGGAGGCGGCGC-TGGCGCTGGAGGAGCGGGAGATGCCGCCGTGCCCGCCCGGGCTTCGCCAGTACGAGACCATGGTCGTGCTCCGCCCCGACATGTCCGAGGAGGAGCGCCTCGCCCTCATACAGCGTTACGAGGAGCTCCTTGTTGCGGGTGGCGCCATGTATGTGGAAGTCTTCAACCGAGGAGTCATCCCACTGGCATACAGCATCAGGAAGAGGAACAGCAGGACTGGTTTGCCATCCACCTACTACGACGGAATCTACCTCCTTGTGACATACTTCACCAAGCCTGAATCCCTGGATGCTCTGCAAATGAGGCTCAATGCTGACGACGATGTCATCCGCTCAACCAGTTTCAAGGTCCGCAAGCGGAAAGCCTTTTAAGATCAGTTTCACCACCTGGACTCAGGTTTCCATGTTTTGGGGAATATGTTTATATCATACAAGAATCCTACTGCCATGGGAGGAGATTGGTTTTTCGCTGCAATCGTTGAGAAAAAATGTCGCCCTTTCTGTTGATAATTTAGAAGAAATTTGTCTTCC-TTTTTTTTCGTTATAGCACTGCTCTGATCTTACCTGGTACTCCTACACGTTAAGGGATATTGAACGAACACTTTTGTGGAGCATGGCCTGCTGGGGCCTCTGGAACAAGTTATGCTGTTAACAAAATCAGGGCTCATTTCCTGTACGCCATGGCATTTCATTTATAGGCTGCCTTACCGTGCTGATTGAAGATCTATTAAAAAAAAAAANAANAAACTCGTGCCGTATTGGNNGCTTCCTCGT]

[+] EMBL AK061198             [CGCCTACCTCCACTCTCTCGCGCTCGCTCTCCAATGCCGCCACCAATGGCGCTCTCCATCTCCTCCACCGCCGCGGCGACCGCTCTCCTCCCGACTCTCCCGCCCTCGCGCTCGCGCCTGCGCGTCGCGCCGCGCAGGGCGGCGGCTCGGGTGGCGCGCGTGGTGTCGGCCGGATACGCCGCGGGGTTCTACGGCGGGGCGGCGGCTGCGGCCGGTGGCGAGAACGACGAGGTGGGGGATGAGGAGGGTTCGTCCTCGGGGTTCGGTGCTGGGCTAGGGATAGGAGGCGGTGGGCTTGGGATGTCGGCCGCGGAGGCGGCGC TGGCGCTGGAGGAGCGGGAGATGCCGCCGTGCCCGCCCGGGCTTCGCCAGTACGAGACCATGGTCGTGCTCCGCCCCGACATGTCCGAGGAGGAGCGCCTCGCCCTCATACAGCGTTACGAGGAGCTCCTTGTTGCGGGTGGCGCCATGTATGTGGAAGTCTTCAACCGAGGAGTCATCCCACTGGCATACAGCATCAGGAAGAGGAACAGCAGGACTGGTTTGCCATCCACCTACTACGACGGAATCTACCTCCTTGTGACATACTTCACCAAGCCTGAATCCCTGGATGCTCTGCAAATGAGGCTCAATGCTGACGACGATGTCATCCGCTCAACCAGTTTCAAGGTCCGCAAGCGGAAAGCCTTTTAAGATCAGTTTCACCACCTGGACTCAGGTTTCCATGTTTTGGGGAATATGTTTATATCATACAAGAATCCTACTGCCATGGGAGGAGATTGGTTTTTCGCTGCAATCGTTGAGAAAAAATGTCGCCCTTTCTGTTGATAATTTAGAAGAAATTTGTCTTCC TTTTTTTTCGTTATAGCACTGCTCTGATCTTACCTGGTACTCCTACACGTTAAGGGATATTGAACGAACACTTTTGTGGAGCATGGCCTGCTGGGGCCTCTGGAACAAGTTATGCTGTTAACAAAATCAGGGCTCATTTCCTGTACGCCATGGCATTTCATTTATAGGCTGCCTTAC                                                                  ]
[+] EMBL AK099076             [         CCACTCTCTCGCGCTCGCTCTCCAATGCCGCCACCAATGGCGCTCTCCATCTCCTCCACCGCCGCGGCGACCGCTCTCCTCCCGACTCTCCCGCCCTCGCGCTCGCGCCTGCGCGTCGCGCCGCGCAGGGCGGCGGCTCGGGTGGCGCGCGTGGTGTCGGCCGGATACGCCGCGGGGTTCTACGGCGGGGCGGCGGCTGCGGCCGGTGGCGAGAACGACGAGGTGGGGGATGAGGAGGGTTCGTCCTCGGGGTTCGGTGCTGGGCTAGGGATAGGAGGCGGTGGGCTTGGGATGTCGGCCGCGGAGGCGGCGC TGGCGCTGGAGGAGCGGGAGATGCCGCCGTGCCCGCCCGGGCTTCGCCAGTACGAGACCATGGTCGTGCTCCGCCCCGACATGTCCGAGGAGGAGCGCCTCGCCCTCATACAGCGTTACGAGGAGCTCCTTGTTGCGGGTGGCGCCATGTATGTGGAAGTCTTCAACCGAGGAGTCATCCCACTGGCATACAGCATCAGGAAGAGGAACAGCAGGACTGGTTTGCCATCCACCTACTACGACGGAATCTACCTCCTCGTGACATACTTCACCAAGCCTGAATCCCTGGATGCTCTGCAAATGAGGCTCAATGCTGACGACGATGTCATCCGCTCAACCAGTTTCAAGGTCCGCAAGCGGAAAGCCTTTTAAGATCAGTTTCACCACCTGGACTCAGGTTTCCATGTTTTGGGGAATATGTTTATATCATACAAGAATCCTACTGCCATGGGAGGAGATTGGTTTTTCGCTGCAATCGTTGAGAAAAAATGTCGCCCTTTCTGTTGATAATTTAGAAGAAATTTGTCTTCC TTTTTTTTCGTTATAGCACTGCTCTGATCTTACCTGGTACTCCTACACGTTAAGGGATATTGAACGAACACTTTTGTGGAGCATGGCCTGCTGGGGCCTCTGGAACAAGTTATGCTGTTAACAAAATCAGGGCTCATTTCCTGTACGCCATGG                                                                                          ]
[+] EMBL OSS14564A            [                     GCTCGCTCTCCAATGCCGCCACCAATGGCGCTCTCCATCTCCTCCACCGCCGCGGCGACCGCTCTCCTCCCGACTCTCCCGCCCTCGNGCTCGCGCCTGCGGTTNGCGCNGCGCAGGGCGGCGGCTCGGGTGGCGCGCTTGGTGTCGGCCGGATACGCCGCGGGGTTCTACGGCGGGGCGGCGGCTGCGGCCGGTGGCGAGAACNACGAGGTGGGGGATGAGGAGGGTTCGTCCTCGGGGTTCGGTGCTGGGCTAGGGATAGGAGGCGGTGGGCTTNGAATGTCGGCCGCGGAGGC GCGCTTGGCGCTGGAGGAGCGGGANATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB655523             [                                                 CGCTCTCCATCTCCTCCACCGCCGCGGCGACCGCTCTCCTCCCGACTCTCCCGCCCTCGCGCTCGCGCCTGCGCGTCGCGCCGCGCAGGGCGGCGGCTCGGGTGGCGCGCGTGGTGTCGGCCGGATACGCCGCGGGGTTCTACGGCGGGGCGGCGGCTGCGGCCGGTGGCGAGAACGACGAGGTGGGGGATGAGGAGGGTTCGTCCTCGGGGTTCGGTGCTGGGCTAGGGATAGGAGGCGGTGGGCTTGGGATGTCGGCCGCGGAGGCGGCGC TGGCGCTGGAGGAGCGGGAGATGCCGCCGTGCCCGCCCGGGCTTCGCCAGTACGAGACCATGGTCGTGCTCCGCCCCGACATGTCCGAGGAGGAGCGCCTCGCCCTCATACAGCGTTACGAGGAGCTCCTTGTTGCGGGTGGCGCCATGTATGTGGAAGTCTTCAACCGAGGAGTCATCCCACTGGCATACAGCATCAGGAAGAGGAACAGCAGGACTGGTTTGCCATCCACCTACTACGACGGAATCTACCTCCTTGTGACATACTTCACCAAGCCTGAATCCCTGGATGCTCTGCAAATGAGGCTCAATGCTGACGACGATGTCATCCGCTCAACCAGTTTCAAGGTCCGCAAGCGGAAAGCCTTTTAAGATCAGTTTCACCACCTGGACTCAGGTTTCCATGTTTTGGGGAATATGTTTATATCATACAAGAATCCTACTGCCATGGGAGGAGATTGGTTTTTCGCTGCAATCGTTGAGAAAAAATGTCGCCCTTTCTGT                                                                                                                                                                                                                                                                               ]
[+] EMBL AU174714             [                                                                                                                                                                                                                                                                                                                                                     AGATGCCGCCGTGCCCGCCCGGGCTTCGCCAGTACGAGACCATGGTCGTGCTCCGCCCCGACATGTCCGAGGAGGAGCGCCTCGCCCTCATACAGCGTTACGAGGAGCTCCTTGTTGCGGGTGGCGCCATGTATGTGGAAGTCTTCAACCGAGGAGTCATCCCACTGGCATACAGCATCAGGAAGAGGAACAGCAGGACTGGTTTGCCATCCACCTACTACGACGGAATCTACCTCCTTGTGACATACTTCACCAAGCCTGAATCCCTGGATGCTCTGCAAATGAGGCTCAATGCTGACGACGATGTCATCCGCTCAACCAGTTTCAAGGTCCGCAAGCGGAAAGCCTTTTAAGATCAGTTTCACCACCTGGACTCAGGTTTCCATGTT                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL AA751865             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tttttttnTGGANTCAGGTTTCCATGTTTNGGGGAATATGTTTATATCATACAAGAATCCTACCGCCATGGGAGGAGATTGGTTTTTCGCTGCAATCGTTGAGAAAAAATGTCGCCCTTTCTGTTGATAATTTAGAAGAAATTTGTCTTCCTTTTTTTTTCGTNATAGCACTGCTCTGATCTTACCTGGTACTCCTACACGTTAAGGGATATTGAACGAACACTTTTGTGGAGCATGGCCTGCTGGGGCCTCTGGAACAAGTTATGCTGTTAACAAAATCAGGGCTCATTTCCTGTACGCCATGGCATTTCATTTATAGGCTGCCTTACCGTGCTGATTGAAGATCTATTAAAAAAAAAAANAANAAACTCGTGCCGTATTGGNNGCTTCCTCGT]
[+] EMBL AA751870             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 aCTCTCTNTTNATAATTTANAAGAAATTTGTCTTCC TTTTTTTTCGTTATAGCACTGCTCTGATCTTACCTGGTACTCCTACACGTTAAGGGATATTGAACGAACACTTTTGTGGAGCATGGCCTGCTGGGGCCTCTGGAACAAGTTAT                                                                                                                                  ]


>consensus_13556#0 CGCCTACCTCCACTCTCTCGCGCTCGCTCTCCAATGCCGCCACCAATGGCGCTCTCCATC TCCTCCACCGCCGCGGCGACCGCTCTCCTCCCGACTCTCCCGCCCTCGCGCTCGCGCCTG CGCGTCGCGCCGCGCAGGGCGGCGGCTCGGGTGGCGCGCGTGGTGTCGGCCGGATACGCC GCGGGGTTCTACGGCGGGGCGGCGGCTGCGGCCGGTGGCGAGAACGACGAGGTGGGGGAT GAGGAGGGTTCGTCCTCGGGGTTCGGTGCTGGGCTAGGGATAGGAGGCGGTGGGCTTGGG ATGTCGGCCGCGGAGGCGGCGCTGGCGCTGGAGGAGCGGGAGATGCCGCCGTGCCCGCCC GGGCTTCGCCAGTACGAGACCATGGTCGTGCTCCGCCCCGACATGTCCGAGGAGGAGCGC CTCGCCCTCATACAGCGTTACGAGGAGCTCCTTGTTGCGGGTGGCGCCATGTATGTGGAA GTCTTCAACCGAGGAGTCATCCCACTGGCATACAGCATCAGGAAGAGGAACAGCAGGACT GGTTTGCCATCCACCTACTACGACGGAATCTACCTCCTTGTGACATACTTCACCAAGCCT GAATCCCTGGATGCTCTGCAAATGAGGCTCAATGCTGACGACGATGTCATCCGCTCAACC AGTTTCAAGGTCCGCAAGCGGAAAGCCTTTTAAGATCAGTTTCACCACCTGGACTCAGGT TTCCATGTTTTGGGGAATATGTTTATATCATACAAGAATCCTACTGCCATGGGAGGAGAT TGGTTTTTCGCTGCAATCGTTGAGAAAAAATGTCGCCCTTTCTGTTGATAATTTAGAAGA AATTTGTCTTCCTTTTTTTTCGTTATAGCACTGCTCTGATCTTACCTGGTACTCCTACAC GTTAAGGGATATTGAACGAACACTTTTGTGGAGCATGGCCTGCTGGGGCCTCTGGAACAA GTTATGCTGTTAACAAAATCAGGGCTCATTTCCTGTACGCCATGGCATTTCATTTATAGG CTGCCTTACCGTGCTGATTGAAGATCTATTAAAAAAAAAAANAANAAACTCGTGCCGTAT TGGNNGCTTCCTCGT



consensusID : consensus_13556#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 778
fasta sequence
                              [TTCCAGCCAGCCACACATCCGCAAGAACAATATCGATGTCTCATACTTCTTAACTTAATATCTATCATACAAAAGGTAGACCAAAGTTTTATGACCCGGCATTTTCTCCAGGGTTAGTTGCCCGAGCATTCAGCAGGGGTTGCAGCGCTTTCACGACAATGCTCATGTTTGGTCGAAAGTCCGCTTCATACTGAACGCATAACGCCGCAACAGCTGCAAACTTTGCGACAGCTTTAGGAGGATAGTCCCCTCCAAGTCTTGAGTCAACACATTGCCTAACCTTGAGGCGGCGCTGGCGCTGGAGGAGCGGGAGATGCCGCCGTGCCCGCCCGGGCTTCG-CCAGTACGAGACCATGGTCGTGCTCCGACCCGACATGTCCGAGGAGGAGCGCCTCGCCCTCATACAGCGTTACGAGGAGCTCCTTGTTGCGGGTGGCGCCATGTATGTGGAAGTCTTCAACCGAGGAGTCATCCCACTGGCATACAGCATCAGGAAGAGGAACAGCAGGACTGGTTTGCCATCCACCTACTACGACGGAATCTACCTCCTTGTGACATACTTCACCAAGCCTGAATCCCTGGATGCTCTGCAAATGAGGCTCAATGCTGACGACGATGTCATCCGCTCAACCAGTTTCAAGGTCCGCAAGCGGAAAGCCTTTTAAGATCAGTTTCACCACCTGGACTCAGGTTTCCATGTTTTGGGGAATATGTTTATATCATACAAGAATCCTACTGCCATGGGGAGGGAGATTGGTTTTTCGCTGCCAAAAAAAAAA]

[+] EMBL CF569138             [TTCCAGCCAGCCACACATCCGCAAGAACAATATCGATGTCTCATACTTCTTAACTTAATATCTATCATACAAAAGGTAGACCAAAGTTTTATGACCCGGCATTTTCTCCAGGGTTAGTTGCCCGAGCATTCAGCAGGGGTTGCAGCGCTTTCACGACAATGCTCATGTTTGGTCGAAAGTCCGCTTCATACTGAACGCATAACGCCGCAACAGCTGCAAACTTTGCGACAGCTTTAGGAGGATAGTCCCCTCCAAGTCTTGAGTCAACACATTGCCTAACCTTGAGGCGGCGCTGGCGCTGGAGGAGCGGGAGATGCCGCCGTGCCCGCCCGGGCTTCG CCAGTACGAGACCATGGTCGTGCTCCGACCCGACATGTCCGAGGAGGAGCGCCTCGCCCTCATACAGCGTTACGAGGAGCTCCTTGTTGCGGGTGGCGCCATGTATGTGGAAGTCTTCAACCGAGGAGTCATCCCACTGGCATACAGCATCAGGAAGAGGAACAGCAGGACTGGTTTGCCATCCACCTACTACGACGGAATCTACCTCCTTGTGACATACTTCACCAAGCCTGAATCCCTGGATGCTCTGCAAATGAGGCTCAATGCTGACGACGATGTCATCCGCTCAACCAGTTTCAAGGTCCGCAAGCGGAAAGCCTTTTAAGATCAGTTTCACCACCTGGACTCAGGTTTCCATGTTTTGGGGAATATGTTTATATCATACAAGAATCCTACTGCCATGGGGAGGGAGATTGGTTTTTCG               ]
[+] EMBL BI805244             [                                                                                                                                                                                                                                                                                                 cgGCTGGCTCTGGAGGAGCGGGAGATGCC CCGTGCCCGCCCGGGCTTCGCCCAGTACGAGACCATGGTCGTGCTCCGCCCCGACATGTCCGAGGAGGAGCGCCTCGCCCTCATACAGCGTTACGAGGAGCTCCTTGTTGCGGGTGGCGCCATGTATGTGGAAGTCTTCAACCGAGGAGTCATCCCACTGGCATACAGCATCAGGAAGAGGAACAGCAGGACTGGTTTGCCATCCACCTACTACGACGGAATCTACCTCCTTGTGACATACTTCACCAAGCCTGAATCCCTGGATGCTCTGCAAATGAGGCTCAATGCTGACGACGATGTCATCCGCTCAACCAGTTTCAAGGTCCGCAAGCGGAAAGCCTTTTAAGATCAGTTTCACCACCTGGACTCAGGTTTCCATGTTTTGGGGAATATGTTTATATCATACCAGAATCCTACTGCCAT GGGA GGAGATTGGTTTTTCGCTGCCAAAAAAAAAA]


>consensus_13556#1 TTCCAGCCAGCCACACATCCGCAAGAACAATATCGATGTCTCATACTTCTTAACTTAATA TCTATCATACAAAAGGTAGACCAAAGTTTTATGACCCGGCATTTTCTCCAGGGTTAGTTG CCCGAGCATTCAGCAGGGGTTGCAGCGCTTTCACGACAATGCTCATGTTTGGTCGAAAGT CCGCTTCATACTGAACGCATAACGCCGCAACAGCTGCAAACTTTGCGACAGCTTTAGGAG GATAGTCCCCTCCAAGTCTTGAGTCAACACATTGCCTAACCTTGAGGCGGCGCTGGCGCT GGAGGAGCGGGAGATGCCGCCGTGCCCGCCCGGGCTTCGCCAGTACGAGACCATGGTCGT GCTCCGACCCGACATGTCCGAGGAGGAGCGCCTCGCCCTCATACAGCGTTACGAGGAGCT CCTTGTTGCGGGTGGCGCCATGTATGTGGAAGTCTTCAACCGAGGAGTCATCCCACTGGC ATACAGCATCAGGAAGAGGAACAGCAGGACTGGTTTGCCATCCACCTACTACGACGGAAT CTACCTCCTTGTGACATACTTCACCAAGCCTGAATCCCTGGATGCTCTGCAAATGAGGCT CAATGCTGACGACGATGTCATCCGCTCAACCAGTTTCAAGGTCCGCAAGCGGAAAGCCTT TTAAGATCAGTTTCACCACCTGGACTCAGGTTTCCATGTTTTGGGGAATATGTTTATATC ATACAAGAATCCTACTGCCATGGGGAGGGAGATTGGTTTTTCGCTGCCAAAAAAAAAA



consensusID : consensus_13556#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 608
fasta sequence
                              [CCNGATACCCAGTTGAAATAACCTNATTAAGGGACAAAAGGGNGTCNCCGCGGGGCGCCGTTTAGAATNANGAATCCCCGGGCTGCAGGATTGGCACGAGNTNTTCAACCGGAGGATTATCCNATTGGCANACAGCATCAGGAAGAGGAACAGCAGGATTGGTTTGCCATCCACTTACTAGGACGGAATNTACTTCCTTGTGACATA-TTCACCAAGCCTGAATCCTTGGATGCTCTGCAAATGAGGCTCAATGCTGACGACGATGTCATCCGCTCAACCAGTTTCAAGGTCCGCAAGCGGAAAGCCTTTTAAGATCAGTTTCACCACCTGGACTCAGGTTTCCATGTTTTGGGGAATATGTTTATATCATACAAGAATCCTACTGCCATGGGAGGAGATTGGTTTTTCGCTGCAATCGTTGAGAAAAAATGTCGCCCTTTCTGTTGATAATTTAGAAGAAATTTGTCTTCCTTTTTTTTTCGTTATAGCACTGCTCTGATCTTACCTGGTACTCCTACACGTTAAGGGATATTGAACGAACACTTTTGTGGAAAAAAAACTGCTGGGGCCTNTGGAACAAGTTATGCTGTTAACAAAAAAAAAAAAAA]

[+] EMBL AA753821             [CCNGATACCCAGTTGAAATAACCTNATTAAGGGACAAAAGGGNGTCNCCGCGGGGCGCCGTTTAGAATNANGAATCCCCGGGCTGCAGGATTGGCACGAGNTNTTCAACCGGAGGATTATCCNATTGGCANACAGCATCAGGAAGAGGAACAGCAGGATTGGTTTGCCATCCACTTACTAGGACGGAATNTACTTCCTTGTGACATA TTCACCAAGCCTGAATCCTTGGATGCTCTGCAAATGAGGCTCAATGCTGACGACGATGTCATCCGCTCAACCAGTTTCAAGGTCCGCAAGCGGAAAGCCTTTTAAGATCAGTTTCACCACCTGGACTCAGGTTTCCATGTTTTGGGGAATATGTTTATATCATACAAGAATCCTACTGCCATGGGAGGAGATTGGTTTTTCGCTGCAATCGTTGAGAAAAAATGTCGCCCTTTCTGTTGATAATTTAGAAGAAATTTGTCTTCCTTTTTTTTTCGTTATAGCACTGCTCTGATCTTACCTGGTACTCCTACACGTTAAGGGATATTGAACGAACACTTTTGTGGAAAAAAAA                                                 ]
[+] EMBL AU174713             [                                                                                                                                                        GCAGGNCTGGTTTGCCATCCACCTACTACGACGGAATCTACCTCCTTGTGACATACTTCACCAAGCCTGAATCCCTGGATGCTCTGCAAATGAGGCTCAATGCTGACGACGATGTCATCCGCTCAACCAGTTTCAAGGTCCGCAAGCGGAAAGCCTTTTAAGATCAGTTTCNCCACCTGGACTCAGGTTTCCATGTTTTGGGGAATATGTTTATATCATACAAGAATCCTACTGCCATGGGAGGAGATTGGTTTTTCGCTGCAATCGTTGAGAAAAAATGTCGCCCTTTCTGTTGATAATTTAGAAGAAATTTGTCTTCC TTTTTTTTCGTTATAGCACTGCTCTGATCTTACCTGGTACTCCTACACGTTAAGGGATATTGAACGAACACTTTTGTGGAGCATGGCCTGCTGGGGCCTNTGGAACAAGTTATGCTGTTAACAAAAAAAAAAAAAA]
[+] EMBL CF337914             [                                                                                                                                                                                                                                                                                                                                                                                                                        CGCTGCAATCGTTGAGAAAAAATGTCGCCCTTTCTGTTGATAATTTAGAAGA                                                                                                                                                     ]


>consensus_13556#2 CCNGATACCCAGTTGAAATAACCTNATTAAGGGACAAAAGGGNGTCNCCGCGGGGCGCCG TTTAGAATNANGAATCCCCGGGCTGCAGGATTGGCACGAGNTNTTCAACCGGAGGATTAT CCNATTGGCANACAGCATCAGGAAGAGGAACAGCAGGATTGGTTTGCCATCCACTTACTA GGACGGAATNTACTTCCTTGTGACATATTCACCAAGCCTGAATCCTTGGATGCTCTGCAA ATGAGGCTCAATGCTGACGACGATGTCATCCGCTCAACCAGTTTCAAGGTCCGCAAGCGG AAAGCCTTTTAAGATCAGTTTCACCACCTGGACTCAGGTTTCCATGTTTTGGGGAATATG TTTATATCATACAAGAATCCTACTGCCATGGGAGGAGATTGGTTTTTCGCTGCAATCGTT GAGAAAAAATGTCGCCCTTTCTGTTGATAATTTAGAAGAAATTTGTCTTCCTTTTTTTTT CGTTATAGCACTGCTCTGATCTTACCTGGTACTCCTACACGTTAAGGGATATTGAACGAA CACTTTTGTGGAAAAAAAACTGCTGGGGCCTNTGGAACAAGTTATGCTGTTAACAAAAAA AAAAAAAA



consensusID : consensus_13556#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 258
fasta sequence
                              [TTCTGTTGATAATTTAGAAGAAATTTGTCTCCCTTTTTTTTCCGTTATAGCACTGCTCTGATCTTACCTGGTACTCCTACACGTTNAGGGATATTGAACGAACACTTTTGTGGANCATGGCCTGCTNGGGGCCTCTGGAACAAGTTATGCTGTTAACAAAATCAGGGCTCATTCCTGTACCCATGGCATTTCATTTAAAAAAAAAAAANAAAAAACTCNANGGGGGGCCCGGTACCCANTCCNCCCAATATTGANTCT]

[+] EMBL BE228456             [TTCTGTTGATAATTTAGAAGAAATTTGTCTCCCTTTTTTTTCCGTTATAGCACTGCTCTGATCTTACCTGGTACTCCTACACGTTNAGGGATATTGAACGAACACTTTTGTGGANCATGGCCTGCTNGGGGCCTCTGGAACAAGTTATGCTGTTAACAAAATCAGGGCTCATTCCTGTACCCATGGCATTTCATTTAAAAAAAAAAAANAAAAAACTCNANGGGGGGCCCGGTACCCANTCCNCCCAATATTGANTCT]


>consensus_13556#3 TTCTGTTGATAATTTAGAAGAAATTTGTCTCCCTTTTTTTTCCGTTATAGCACTGCTCTG ATCTTACCTGGTACTCCTACACGTTNAGGGATATTGAACGAACACTTTTGTGGANCATGG CCTGCTNGGGGCCTCTGGAACAAGTTATGCTGTTAACAAAATCAGGGCTCATTCCTGTAC CCATGGCATTTCATTTAAAAAAAAAAAANAAAAAACTCNANGGGGGGCCCGGTACCCANT CCNCCCAATATTGANTCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13556#0      CGCCTACCTCCACTCTCTCGCGCTCGCTCTCCAATGCCGCCACCAATGGCGCTCTCCATC 60
consensus_13556#3      ------------------------------------------------------------
consensus_13556#2      ------------------------------------------------------------
consensus_13556#1      ------------------------------------------------------------
                                                                                   

consensus_13556#0      TCCTCCACCGCCGCGGCGACCGCTCTCCTCCCGACTCTCCCGCCCTCGCGCTCGCGCCTG 120
consensus_13556#3      ------------------------------------------------------------
consensus_13556#2      ------------------------------------------------------------
consensus_13556#1      ------------------------------------------------------------
                                                                                   

consensus_13556#0      CGCGTCGCGCCGCGCAGGGCGGCGGCTCGGGTGGCGCGCGTGGTGTCGGCCGGATACGCC 180
consensus_13556#3      ------------------------------------------------------------
consensus_13556#2      ------------------------------------------------------------
consensus_13556#1      ------------------------------------------------------------
                                                                                   

consensus_13556#0      GCGGGGTTCTACGGCGGGGCGGCGGCTGCGGCCGGTGGCGAGAACGACGAGGTGGGGGAT 240
consensus_13556#3      ------------------------------------------------------------
consensus_13556#2      ------------------------------------------------------------
consensus_13556#1      ------------------------------------------------------------
                                                                                   

consensus_13556#0      GAGGAGGGTTCGTCCTCGGGGTTCGGTGCTGGGCTAGGGATAGGAGGCGGTGGGCTTGGG 300
consensus_13556#3      ------------------------------------------------------------
consensus_13556#2      ------------------------------------------------------------
consensus_13556#1      ------------------------------------------------------------
                                                                                   

consensus_13556#0      ATGTCGGCCGCGGAGGCGGCGCTGGCGCTGGAGGAGCGGGAGATGCCGCCGTGCCCGCCC 360
consensus_13556#3      ------------------------------------------------------------
consensus_13556#2      ------------------------------------------------------------
consensus_13556#1      --------TTCCAGCCAGCCACACATCCGCAAGAACAATATCGATGTCTCATACTTCTTA 52
                                                                                   

consensus_13556#0      GGGCTTCGCCAGTACGAGACCATGGTCGTGCTCCGCCCCGACATGTCCGAGGAGGAGCGC 420
consensus_13556#3      ------------------------------------------------------------
consensus_13556#2      --------------------CCNGATACCCAGTTGAAATAACCTNATTAAGGGACAAAAG 40
consensus_13556#1      ACTTAATATCTATCATACAAAAGGTAGACCAAAGTTTTATGACCCGGCATTTTCTCCAGG 112
                                                                                   

consensus_13556#0      CTCGCCCTCATACAGCGTTACGAGGAGCTCCTTGTTGCGGGTGGCGCCATGTATGTGGAA 480
consensus_13556#3      ------------------------------------------------------------
consensus_13556#2      GGNGTCNCCGCGGGGCGCCGTTTAGAATNANGAATCCCCGGGCTGCAGGATTGGCACGAG 100
consensus_13556#1      GTTAGTTGCCCGAGCATTCAGCAGGGGTTGCAGCGCTTTCACGACAATGCTCATGTTTGG 172
                                                                                   

consensus_13556#0      GTCTTCAACCGAGGAGTCATCCCACTGGCATACAGCATCAGGAAGAGGAACAGCAGGACT 540
consensus_13556#3      ------------------------------------------------------------
consensus_13556#2      NTNTTCAACCGGAGGATTATCCNATTGGCANACAGCATCAGGAAGAGGAACAGCAGGATT 160
consensus_13556#1      TCGAAAGTCCGCTTCATACTGAACGCATAACGCCGCAACAGCTGCAAACTTTGCGACAGC 232
                                                                                   

consensus_13556#0      GGTTTGCCATCCACCTACTACGACGGAATCTACCTCCTTGTGACATACTTCACCAAGCCT 600
consensus_13556#3      ------------------------------------------------------------
consensus_13556#2      GGTTTGCCATCCACTTACTAGGACGGAATNTACTTCCTTGTGACATA-TTCACCAAGCCT 219
consensus_13556#1      TTTAGGAGGATAGTCCCCTCCAAGTCTTGAGTCAACACATTGCCTAACCTTGAGGCGGCG 292
                                                                                   

consensus_13556#0      GAATCCCTGGATGCTCTGCAAATGAGGCTCAATGCTGACGACGATGTCATCCGCTCAACC 660
consensus_13556#3      ------------------------------------------------------------
consensus_13556#2      GAATCCTTGGATGCTCTGCAAATGAGGCTCAATGCTGACGACGATGTCATCCGCTCAACC 279
consensus_13556#1      CTGGCGCTGGAGGAGCGGGAGATGCCGCCGTGCCCGCCCGGGCTTCGCCAGTACGAGACC 352
                                                                                   

consensus_13556#0      AGTTTCAAGGTCCGCAAGCGGAAAGCCTTTTAAGATCAGTTTCACCACCTGGACTCAGGT 720
consensus_13556#3      ------------------------------------------------------------
consensus_13556#2      AGTTTCAAGGTCCGCAAGCGGAAAGCCTTTTAAGATCAGTTTCACCACCTGGACTCAGGT 339
consensus_13556#1      ATGGTCGTGCTCCGACCCGACATGTCCGAGGAGGAGCGCCTCGCCCTCATACAGCGTTAC 412
                                                                                   

consensus_13556#0      TTCCATGTT-TTGGGGAATATGTTTATATCATACAAGAATCCTACTGCCATGGGAGGAGA 779
consensus_13556#3      ------------------------------------------------------------
consensus_13556#2      TTCCATGTT-TTGGGGAATATGTTTATATCATACAAGAATCCTACTGCCATGGGAGGAGA 398
consensus_13556#1      GAGGAGCTCCTTGTTGCGGGTGGCGCCATGTATGTGGAAGTCTTCAACCGAGGAGTCATC 472
                                                                                   

consensus_13556#0      TTGGTTTTTCGCTGCAATCGTTGAGAAAAAATGTCGCCCTTTCTGTTGATAATTTAGAAG 839
consensus_13556#3      ----------------------------------------TTCTGTTGATAATTTAGAAG 20
consensus_13556#2      TTGGTTTTTCGCTGCAATCGTTGAGAAAAAATGTCGCCCTTTCTGTTGATAATTTAGAAG 458
consensus_13556#1      CCACTGGCATACAGCATCAGGAAGAGGAACAGCAGGACTGGTTTGCCATCCACCTACTAC 532
                                                                * **      *  **  * 

consensus_13556#0      AAATTTGTCTTCCTTTTTTTTC-GTTATAGCACTGCTCTGATCTTACCTGGTACTCC-TA 897
consensus_13556#3      AAATTTGTCTCCCTTTTTTTTCCGTTATAGCACTGCTCTGATCTTACCTGGTACTCC-TA 79
consensus_13556#2      AAATTTGTCTTCCTTTTTTTTTCGTTATAGCACTGCTCTGATCTTACCTGGTACTCC-TA 517
consensus_13556#1      GACGGAATCTACCTCCTTGTGACAT-ACTTCACCAAGCCTGAATCCCTGGATGCTCTGCA 591
                        *     *** ***  ** *    * *   ***    *     *  *  * * ***   *

consensus_13556#0      CACGTTAAGGGATATTGAACGAACACTTTTGTGGAGCATGGCCTGCTGGGG-CCTCTGGA 956
consensus_13556#3      CACGTTNAGGGATATTGAACGAACACTTTTGTGGANCATGGCCTGCTNGGGGCCTCTGGA 139
consensus_13556#2      CACGTTAAGGGATATTGAACGAACACTTTTGTGGAAAAAAAACTGCTGGGG-CCTNTGGA 576
consensus_13556#1      AATGAGGCTCAATGCTGA-CGACGATGTCATCCGCTCAACCAGTTTCAAGGTCCGCAAGC 650
                        * *       **  *** ***  *  *     *   *     *     ** **    * 

consensus_13556#0      ACAAGTTATGCTGTTAACAAAATCAGGGCTCATTTCCTGTACGCCATGGCATTTCATTTA 1016
consensus_13556#3      ACAAGTTATGCTGTTAACAAAATCAGGGCTCATT-CCTGTAC-CCATGGCATTTCATTTA 197
consensus_13556#2      ACAAGTTATGCTGTTAACAAAAAAAAAAAAAA---------------------------- 608
consensus_13556#1      GGAAAGCCTTTTAAGATCAGTTTCACCACCTGGACTCAGGTTTCCATGTTTTGGGGAATA 710
                         **    *  *   * **     *                                   

consensus_13556#0      TAGGCTGCCTTACCGTGCTGATTGAAGATCTATTAAAAAAAAAAANAANAAACTCGTGCC 1076
consensus_13556#3      AAAA----------AAAAAAANAAAAAACTCNANGGGGGGCCCGGTACCCANTCCNCCCA 247
consensus_13556#2      ------------------------------------------------------------
consensus_13556#1      TGTTTATATCATACAAGAATCCTACTGCCATGGGGAGGGAGATTGGTTTTTCGCTGCCAA 770
                                                                                   

consensus_13556#0      GTATTGGNNGCTTCCTCGT 1095
consensus_13556#3      ATATTGANTCT-------- 258
consensus_13556#2      -------------------
consensus_13556#1      AAAAAAAA----------- 778
                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)