cluster # 13558

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Oryza sativa
cluster # 13558 cluster # 13558 Sequences # 13 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13558#0 length = 2002 sequences # 10

consensus_13558#1 length = 786 sequences # 2
consensus_13558#2 length = 405 sequences # 1

consensusID : consensus_13558#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 2002
fasta sequence

                              [CGCCCCTTAAGGAACTCCGATCGAACAGCCCAATCGACCATGGCCGCCGCCGCCGCCCGTTCCGGCGCGCATCCGCCATCGTTCGCCTCCTCGCTCGGCCGGTGCAGGGTTCTTCCAGTCGTGGTGGTGCGTCGGCCGGGCGGTGCCGCGAGGCCGTCACCGCTGCTCGCTCCGGCGAGGTGCGCCGCCGCCGTCGGGACGGCGGCGCCCAAGGTGGAGGGCGGCGGACGGCGGTCGTCGGAGCAGGGGCAGCTGGCGGTGGCGCCGGCGCGGCTGGTGGATGAGCTGGTCGAGGAGGCGCTGGTGTGGTCGTCGCAGCACGGCCTCGTCGTTGGCGACAAGAACCACCCGAGATCAGGAAAAGCTCCCGGTGTTGGTTTGCTCCATGCCCCATTTGCTCTACTGCCAATGTCATTTTCGAAAGTTTACTGGGATCAGGCGGTTGAATTGGCTCCCCTTTTCAATGAGCTTGTTGATCGTGTTAGTTTGGATGGGGATTTTTTGCAGGAGACTTTGGCAAGAACGAAAGAGGTGGATTCATTCACTGGAAGGCTTCTTGATATCCATGCAAAGATGATGAAACTAAACAAGAAAGAGGATGTTAGGTTGGGTCTTACTAGGTCAGATTACATGATTGATGGGGCCACT-GACCAGCTTCTTCAAGTTGAACTCAACACCATTTCAACATCATCCAACGGTCTTGCTTGC-GGTGTATGT-GAACTTCACA-GAAACCTGATTA-GGCAGCATGA-GA-GGGAGCTCGG-TTTGGATCCAGAGAG--TGTTG-TTGGGAACACAGCAATTGCTCAGCATGCTGAAGCATTAGCTGGAGCATGGGCTGAGTTCAACAATCAAAGTTCAGTAGTTCTGGTGGTTGTTCAACCAGAAGAAAGGTACATGTATGACCAATATTGGATAACTGTCGCCTTGAGAGAAATGTATGGGGTGACGACAATTCGCAAAACAATGGCTGCAATAGATGCAGAAGGAGAGCTCCGTCCTGACGGTACACTAACAATAGATGGATTGCCAGTTGCTGTTGTGTACTTCAGAGCAGGTTATACACCAAATGATTACCCTTCAGAAGCGGAATGGAGAGCAAGACTCTTGATTGAGTGTTCCTCTGCTATTAAGTGCCCATCAATAGCACACCATCTTGTTGGAACCAAAAAGATTCAACAAGAATTGGCAAAAGAAAATGTGCTCGAAAGGTTTCTTGACAACAAAGCCGACATAGAAAAAGTTCGGAAATGCTTTGCAGGGCTATGGAGCTTGGAGAATGACAGTATAGTCATGTCTGCTATTGAATCACCAGAATTGTTTGTTCTGAAGCCACAAAGAGAGGGTGGAGGAAACAACATTTATGGGGACAATCTGCGTGAAACACTGATAAGTCTGAAGAAGGATGGAAGCAATGAACTTGCAGCCTACATCCTAATGCAGAGGATCTTTCCACCAGCATCACTCTGCTATCTAGTCCGAGATGGCACATGCATTCGGGAAAATGCGGTTTCTGAATTTGGAATTTTTGGAGCCTACCTGCGGAACAAAGACAGGGTCATTATAAATGACCAGTGTGGTTATTTGATGAGAACCAAGGCTGCCTCACTGAACGAAGGTGGGGTAGTTGCTGGATACGCATTTTTGAACAGCGTATTCCTGACATGACATGGTAAGACATGCGAAACATGTGTATCGGTTTGAATATGGATAATTCTCCAAGCAGGTTATCAGAGAATTCATAATTTGTATGCTATTACTTTTAGCAGGAATCATACCAATGTTATTTCCATGACACACTTTTTTTTATTTGGCATGATTTCGCTATCAGCCGAGATTGAGGTACCATTATTCCCATGTATAAAAATGTTATAGCTATCATATTTTAATGTATGAGTATCAATTTGCTTATATTGTCCTGAAGTTGATGAGTTTACCGGTCCAGTGCTTTCATTTGAAAAAACAGACATTGTAATTTTGTATGCGAGAGTATGTTGTAATAAAAAAA]

[+] EMBL CB620406             [CGCCCCTTAAGGAACTCCGATCGAACAGCCCAATCGACCATGGCCGCCGCCGCCGCCCGTTCCGGCGCGCATCCGCCATCGTTCGCCTCCTCGCTCGGCCGGTGCAGGGTTCTTCCAGTCGTGGTGGTGCGTCGGCCGGGCGGTGCCGCGAGGCCGTCACCGCTGCTCGCTCCGGCGAGGTGCGCCGCCGCCGTCGGGACGGCGGCGCCCAAGGTGGAGGGCGGCGGACGGCGGTCGTCGGAGCAGGGGCAGCTGGCGGTGGCGCCGGCGCGGCTGGTGGATGAGCTGGTCGAGGAGGCGCTGGTGTGGTCGTCGCAGCACGGCCTCGTCGTTGGCGACAAGAACCACCCGAGATCAGGAAAAGCTCCCGGTGTTGGTTTGCTCCATGCCCCATTTGCTCTACTGCCAATGTCATTTTCGAAAGTTTACTGGGATCAGGCGGTTGAATTGGCTCCCCTTTTCAATGAGCTTGTTGATCGTGTTAGTTTGGATGGGGATTTTTTGCAGGAGACTTTGGCAAGAACGAAAGAGGTGGATTCATTCACTGGAAGGCTTCTTGATATCCATGCAAAGATGATGAAACTAAACAAGAAAGAGGATGTTACGTTGGGTCTTACTACGTCAGATTACATGGTTGATGGGGCCACT GACCAGCTTCTTCAAGTTGAACTCAACACCATTTCAACATCATCCAACGGTCTTGCTTGC GGTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU065351             [                                                                                                                                                                                                                                                                                                                                                                                                     CCCATTTGCTCTACTGCCAATGTCATTTTCGAAAGTTTACTGGGATCAGGCGGTTGAATTGGCTCCCCTTTTCAATGAGCTTGTTGATCGTGTTAGTTTGGATGGGGATTTTTTGCAGGAGACTTTGGCAAGAACGAAAGAGGTGGATTCATTCACTGGAAGGCTTCTTGATATCCATGCAAAGATGATGAAACTAAACAAGAAAGAGGATGTTAGGTTGGGTCTTACTAGGTCAGATTACATGATTGATGGGGCCACTAGACCAGCTTCTTCAAGTTGAACTCAACACCATTTCAACATCATCCAACGGTCTTGCTTGCGGGTGTATGTGGAACTTCACAGGAAACCTGATTAGGGCAGCATGAGGANGGGAGCTCGGTTTTGGANCCAGAGAGGTTNTTGTTTGGGACCACAGCAATTCNTAAGCATGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK099555             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTGATATCCATGCAAAGATGATGAAACTAAACAAGAAAGAGGATGTTAGGTTGGGTCTTACTAGGTCAGATTACATGATTGATGGGGCCACT GACCAGCTTCTTCAAGTTGAACTCAACACCATTTCAACATCATCCAACGGTCTTGCTTGC GGTGTATGT GAACTTCACA GAAACCTGATTA GGCAGCATGA GA GGGAGCTCGG TTTGGATCCAGAGAG  TGTTG TTGGGAACACAGCAATTGCTCAGCATGCTGAAGCATTAGCTGGAGCATGGGCTGAGTTCAACAATCAAAGTTCAGTAGTTCTGGTGGTTGTTCAACCAGAAGAAAGGTACATGTATGACCAATATTGGATAACTGTCGCCTTGAGAGAAATGTATGGGGTGACGACAATTCGCAAAACAATGGCTGCAATAGATGCAGAAGGAGAGCTCCGTCCTGACGGTACACTAACAATAGATGGATTGCCAGTTGCTGTTGTGTACTTCAGAGCAGGTTATACACCAAATGATTACCCTTCAGAAGCGGAATGGAGAGCAAGACTCTTGATTGAGTGTTCCTCTGCTATTAAGTGCCCATCAATAGCACACCATCTTGTTGGAACCAAAAAGATTCAACAAGAATTGGCAAAAGAAAATGTGCTCGAAAGGTTTCTTGACAACAAAGCCGACATAGAAAAAGTTCGGAAATGCTTTGCAGGGCTATGGAGCTTGGAGAATGACAGTATAGTCATGTCTGCTATTGAATCACCAGAATTGTTTGTTCTGAAGCCACAAAGAGAGGGTGGA  AAACAACATTTATGGGGACAATCTGCGTGAAACACTGATAAGTCTGAAGAAGGATGGAAGCAATGAACTTGCAGCCTACATCCTAATGCAGAGGATCTTTCCACCAGCATCACTCTGCTATCTAGTCCGAGATGGCACATGCATTCGGGAAAATGCGGTTTCTGAATTTGGAATTTTTGGAGCCTACCTGCGGAACAAAGACAGGGTCATTATAAATGACCAGTGTGGTTATTTGATGAGAACCAAGGCTGCCTCACTGAACGAAGGTGGGGTAGTTGCTGGATACGCATTTTTGAACAGCGTATTCCTGACATGACATGGTAAGACATGCGAAACATGTGTATCGGTTTGAATATGGATAATTCTCCAAGCAGGTTATCAGAGAATTCATAATTTGTATGCTATTACTTTTAGCAGGAATCATACCAATGTTATTTCCATGACACACTTTTTTTTATTTGGCATGATTTCGCTATCAGCCGAGATTGAGGTACCATTATTCCCATGTATAAAAATGTTATAGCTATCATATTTTAATGTATGAGTATCAATTTGCTT                                                                                                  ]
[+] EMBL OSS1893A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ATTTCAACATCATCCAACGGTCTTGCTTGC GGTGTATGT GAACTTCACA GAAACCTGATTA GGCAGCATGA GA GGGAGCTCGG TTTGGATCCAGAGAG  TGTTG TTGGGAACACAGCAATTGCTCAGCATGCTGAAGCATTAGCTGGAGCATGGGCTGAGTTCAACAATCAAAGTTCAGTAGTTCTGGTGGTTGTTCAACCAGAAGAAAGGTACATGTATGACCAATATTGGATAACTGTCGCCTTGAGAGAAATGTATGGGGTGACGACAATTCGCAAAACAATGGCTGCAATAGATGCAGAAGGAGAGCTCCGTCCTGACGGTACACTAACAATAGATGGNTTGCCAGTTGCTGTTGTGTACTTCAGAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB680206             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              caTGCAATAGACGCTGAAGGAGAGCTCCGTCCTGACGGTACACTAACAATAGATGGATTGCCAGTTGCTGTTGTGTACTTCAGAGCAGGTTATACACCAAATGATTACCCTTCAAAAGCGGAATGGAGAGCAAGACTCTTGATTGAGTGTTCCTCTGCTATTAAGTGCCCATCAATAGCACACCATCTTGTTGGAACCAAAAAGATTCAACAAGAATTGGCAAAAGAAAATGTGCTCGAAAGGTTTCTTGACAACAAAGCCGACATAGAAAAAGTTCGGAAATGCTTTGCAGGGCTATGGAGCTTGGAGAATGACAGTATAGTCATGTCTGCTATTGAATCACCACAATTGTTTGTTCTGAAGCCACAAAGAGAGGGTGGAGGAAACAACATTTATGGGGACAATCTGCGTGAAACACTGATAAGTCTGAAGAAGGATGGAAGCAATGAACTTGCAGCCTACATCCTAATGCAGAGGATCTTTCCACCAGCATCACTCTGCTATCTAGTCCGAGATGGCACATGCATTCGGGAAAATGCGGTTTCTGAATTTGGAATTTTTGGAGCCTACCTGCGGAACAAAGACAGGGTCATTATAAATGACCAGTGTGGTTATTTGATGAGAACCAAGGCTGCCTCACTGAACGAAGGTGGGGTAGTTGCTGGATACGCATTTTTGAACAGCGTATTCCTGACATGACATGGTAAGACATGCGAAACATGTGTATCGGTTTGAATATGGATAATTCTCCAAGCATGTTATCAGAGAATTCATAATTTG                                                                                                                                                                                                                                                                   ]
[+] EMBL CF195834             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CCGTCCTGACGGTACACTAACAATAGATGGATTGCCAGTTGCTGTTGTGTACTTCAGAGCAGGTTATACACCAAATGATTACCCTTCAGAAGCGGAATGGAGAGCAAGACTTTTGATTGAGTGTTCCTCTGCTATTAAGTGCCCATCAATAGCACACCATCNNNTTGGAACCAAAAAGATTCAACAAGAATTGGNNNAAGAAAATGTGNNNNNAAGGTTTCTTGACAACAAAGCCGACATAGAAAAAGTTCGGAAANGCTTTGCAGGGCTATGGAGCTTGGAGNNTGACAGTATAGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB680207             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TATACACCAAATGATTACCCTTCAGAAGCGGAATGGAGAGCAAGACTCTTGATTGAGTGTTCCTCTGCTATTAAGTGCCCATCAATAGCACACCATCTTGTTGGAACCAAAAAGATTCAACAAGAATTGGCAAAAGAAAATGTGCTCGAAAGGTTTCTTGACAACAAAGCCGACATAGAAAAAGTTCGGAAATGCTTTGCAGGGCTATGGAGCTTGGAGAATGACAGTATAGTCATGTCTGCTATTGAATCACCAGAATTGTTTGTTCTGAAGCCACAAAGAGAGGGTGGAGGAAACAACATTTATGGGGACAATCTGCGTGAAACACTGATAAGTCTGAAGAAGGATGGAAGCAATGAACTTGCAGCCTACATCCTAATGCAGAGGATCTTTCCACCAGCATCACTCTGCTATCTAGTCCGAGATGGCACATGCATTCGGGAAAATGCGGTTTCTGAATTTGGAATTTTTGGAGCCTACCTGCGGAACAAAGACAGGGTCATTATAAATGACCAGTGTGGTTATTTGATGAGAACCAAGGCTGCCTCACTGAACGAAGGTGGGGTAGTTGCTGGATACGCATTTTTGAACAGCGTATTCCTGACATGACATGGTAAGACATGCGAAACATGTGTATCGGTTTGAATATGGATAATTCTCCAAGCAGGTTATCAGAGAATTCATAATTTGTATGCTATTACTTTTAGCAGGAATCATACCAATGTTATTTCCATGACACACTTTTTTTTATTTGGCATGATTTCGCTATCAGCCGAGATTGAGGTACCATTATTCCCATGTATAAAAATGTTATAGCTATCATATTTTAATGTATGAGTATCAATTTGC                                                                                                    ]
[-] EMBL CB620407             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCCCATCAATAGCACACCATCTTGTTGGAACCAAAAAGATTCAACAAGAATTGGCAAAAGAAAATGTGCTCGAAAGGTTTCTTGACAACAAAGCCGACATAGAAAAAGTTCGGAAATGCTTTGCAGGGCTATGGAGCTTGGAGAATGACAGTATAGTCATGTCTGCTATTGAATCACCAGAATTGTTTGTTCTGAAGCCACAAAGAGAGGGTGGAGGAAACAACATTTATGGGGACAATCTGCGTGAAACACTGATAAGTCTGAAGAAGGATGGAAGCAATGAACTTGCAGCCTACATCCTAATGCAGAGGATCTTTCCACCAGCATCACTCTGCTATTTAGTCCGAGATGGCACATGCATTCGGGAAAATGCGGTTTCTGAATTTGGAATTTTTGGAGCCTACCTGCGGAACAAAGACAGTGTCATTATAAATGACCAGTGTGGTTATTTGATGAGAACCAAGGCTGCCTCACTGAACGAAGGTGGGGTAGTTGCTGGATACGCATTTTTGAACAGCGTATTCCTGACATGACATGGTAAGACATGCGAAACATGTGTATCGGTTTGAATATGGATAATTCTCCAAGCAGGTTATCAGAGAATTCATAATTTGTATGCTATTACTTTTAGCAGGAATCATACCAATGTTATTTCCATGACACACTTTTTTTTATTTGGCATGATTTCGCTATCAGCCGAGATTGAGGTACCATTATTCCCATGTATAAAAATGTTATAGCTAAAGTATTTTAATGTATGAGTAT                                                                                                            ]
[+] EMBL AU097092             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CAGGNCTATGGACCTTGNAGATTGACAGTATAGTCATGTCTGCTATTG ATCNCCAG ATTGTTTGTTCTGAANCCACAAAGAGAGGTTGGAGGAAACAACATTTATGGGGACAATCTGCGTGAAACACTGATAAGTCTGAAGAAGGATGGAAGCAATGAACTTGCAGCCTACATCCTAATGCAGAGGATCTTTCCACCAGCATCACTCTGCTATCTAGTCCGAGATGGCACATGCATTCGGGAAAATGCGGTTTCTGAATTTGGAATTTTTGGAGCCTA CTGCGGAACAAAGACAGGGTCATTATAAATGACCAGTGTGGTTATTTGATGAGAACCAAGGCTGCCTCACTGAACGAAGGTGGGGTAGTTGCTGGATACGCATTTTTGAACAGCGTATTCCTGACATGACATGGTAAGACATGCGAAACATGTGTATCGGTTTGAATATGGATAATTCTCCAAGCAGGTTATCAGAGAATTCATAATTTGTATGCTATTACTTTTAGCAGGAATCATACCAATGTTATTTCCATGACACACTTTTTTTTATTTGGCATGATTTCGCTATCAGCCGAGATTGAGGTACCATTATTCCCATGTATAAAAATGTTATAGCTATCATATTTTAATGTATGAGTATCAATTTGCTTATATTGTCCTGAAGTTGATGAGTTTACCGGTCCAGTGCTTTCATTTGAAAAAA                                             ]
[+] EMBL CK085187             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGCCTCACTGAACGAAGGTGGGGTAGTTGCTGGATACGCATTTTTGAACAGCGTATTCCTGACATGACATGGTAAGACATGCGAAACATGTGTATCGGTTTGAATATGGATAATTCTCCAAGCAGGTTATCAGAGAATTCATAATTTGTATGCTATTACTTTTAGCAGGAATCATACCAATGTTATTTCCATGACACACTTTTTTTTATTTGGCATGATTTCGCTATCAGCCGAGATTGAGGTACCATTATTCCCATGTATAAAAATGTTATAGCTATCATATTTTAATGTATGAGTATCAATTTGCTTATATTGTCCTGAAGTTGATGAGTTTACCGGTCCAGTGCTTTCATTTGAAAAGACAGACATTGTAATTTTGTATGCGAGAGTATGTTGTAATAAAAAAA]




>consensus_13558#0
CGCCCCTTAAGGAACTCCGATCGAACAGCCCAATCGACCATGGCCGCCGCCGCCGCCCGT
TCCGGCGCGCATCCGCCATCGTTCGCCTCCTCGCTCGGCCGGTGCAGGGTTCTTCCAGTC
GTGGTGGTGCGTCGGCCGGGCGGTGCCGCGAGGCCGTCACCGCTGCTCGCTCCGGCGAGG
TGCGCCGCCGCCGTCGGGACGGCGGCGCCCAAGGTGGAGGGCGGCGGACGGCGGTCGTCG
GAGCAGGGGCAGCTGGCGGTGGCGCCGGCGCGGCTGGTGGATGAGCTGGTCGAGGAGGCG
CTGGTGTGGTCGTCGCAGCACGGCCTCGTCGTTGGCGACAAGAACCACCCGAGATCAGGA
AAAGCTCCCGGTGTTGGTTTGCTCCATGCCCCATTTGCTCTACTGCCAATGTCATTTTCG
AAAGTTTACTGGGATCAGGCGGTTGAATTGGCTCCCCTTTTCAATGAGCTTGTTGATCGT
GTTAGTTTGGATGGGGATTTTTTGCAGGAGACTTTGGCAAGAACGAAAGAGGTGGATTCA
TTCACTGGAAGGCTTCTTGATATCCATGCAAAGATGATGAAACTAAACAAGAAAGAGGAT
GTTAGGTTGGGTCTTACTAGGTCAGATTACATGATTGATGGGGCCACTGACCAGCTTCTT
CAAGTTGAACTCAACACCATTTCAACATCATCCAACGGTCTTGCTTGCGGTGTATGTGAA
CTTCACAGAAACCTGATTAGGCAGCATGAGAGGGAGCTCGGTTTGGATCCAGAGAGTGTT
GTTGGGAACACAGCAATTGCTCAGCATGCTGAAGCATTAGCTGGAGCATGGGCTGAGTTC
AACAATCAAAGTTCAGTAGTTCTGGTGGTTGTTCAACCAGAAGAAAGGTACATGTATGAC
CAATATTGGATAACTGTCGCCTTGAGAGAAATGTATGGGGTGACGACAATTCGCAAAACA
ATGGCTGCAATAGATGCAGAAGGAGAGCTCCGTCCTGACGGTACACTAACAATAGATGGA
TTGCCAGTTGCTGTTGTGTACTTCAGAGCAGGTTATACACCAAATGATTACCCTTCAGAA
GCGGAATGGAGAGCAAGACTCTTGATTGAGTGTTCCTCTGCTATTAAGTGCCCATCAATA
GCACACCATCTTGTTGGAACCAAAAAGATTCAACAAGAATTGGCAAAAGAAAATGTGCTC
GAAAGGTTTCTTGACAACAAAGCCGACATAGAAAAAGTTCGGAAATGCTTTGCAGGGCTA
TGGAGCTTGGAGAATGACAGTATAGTCATGTCTGCTATTGAATCACCAGAATTGTTTGTT
CTGAAGCCACAAAGAGAGGGTGGAGGAAACAACATTTATGGGGACAATCTGCGTGAAACA
CTGATAAGTCTGAAGAAGGATGGAAGCAATGAACTTGCAGCCTACATCCTAATGCAGAGG
ATCTTTCCACCAGCATCACTCTGCTATCTAGTCCGAGATGGCACATGCATTCGGGAAAAT
GCGGTTTCTGAATTTGGAATTTTTGGAGCCTACCTGCGGAACAAAGACAGGGTCATTATA
AATGACCAGTGTGGTTATTTGATGAGAACCAAGGCTGCCTCACTGAACGAAGGTGGGGTA
GTTGCTGGATACGCATTTTTGAACAGCGTATTCCTGACATGACATGGTAAGACATGCGAA
ACATGTGTATCGGTTTGAATATGGATAATTCTCCAAGCAGGTTATCAGAGAATTCATAAT
TTGTATGCTATTACTTTTAGCAGGAATCATACCAATGTTATTTCCATGACACACTTTTTT
TTATTTGGCATGATTTCGCTATCAGCCGAGATTGAGGTACCATTATTCCCATGTATAAAA
ATGTTATAGCTATCATATTTTAATGTATGAGTATCAATTTGCTTATATTGTCCTGAAGTT
GATGAGTTTACCGGTCCAGTGCTTTCATTTGAAAAAACAGACATTGTAATTTTGTATGCG
AGAGTATGTTGTAATAAAAAAA

consensusID : consensus_13558#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 786
fasta sequence

                              [CCCATCAATAGCACACCATCTTGTTGGAACCAAAAAGATTCAACAAGAATTGGCAAAAGAAAATGTGCTCGAAAGGTTTCTTGACAACAAAGCCGACATAGAAAAAGTTCGGAAATGCTTTGCAGGGCTATGGAGCTTGGAGAATGACAGTATAGTCATGTCTGCTATTGAATCA-CCAGAATTGTTTGTTCTGAAGCCACAAAGAGAGGGTGGAGGAAACAACATTTATGGGGACAATCTGCGTGAAACACTGATAAGTCTGAAGAAGGATGGAAGCAATGAACTTGCAGCCTACATCCTAATGCAGAGGATCTTTCCACCAGCATCACTCTGCTATCTAGTCCGAGATGGCACATGCATTCGGGAAAATGCGTTTTCTGAATTTGGAATTTTTGGAGCCTACCTGCGGAACAAAGACAGGGTCATTATAAATGACCAGTGTGGTTATTTGATGAGAACCAAGGCTGCCTCACTGAACGAAGGTGGGGTAGTTGCTGGATACGCATTTTTGAACAGCGTATTCCTGACATGACATGGTAAGACATGCGAAACATGTGTATCGGTTTGAATATGGATAATTCTCCAAGCAGGTTATCAGAGAATTCATAATTTGTATGCTATTACTTTTAGCAGGAATCATACCAATGTTATTTCCATGACACACTTTTTTTTTATTTGGCATGATTTCGCTATCAGCCGAGATTGAGGTACCATTATTCCCATGTATAAAAATGTTATAGCTATCATATTTTAATGTATGAGTATCAATTTGCTTAAAAAAAAGAG]

[-] EMBL CB621472             [CCCATCAATAGCACACCATCTTGTTGGAACCAAAAAGATTCAACAAGAATTGGCAAAAGAAAATGTGCTCGAAAGGTTTCTTGACAACAAAGCCGACATAGAAAAAGTTCGGAAATGCTTTGCAGGGCTATGGAGCTTGGAGAATGACAGTATAGTCATGTCTGCTATTGAATCA CCAGAATTGTTTGTTCTGAAGCCACAAAGAGAGGGTGGAGGAAACAACATTTATGGGGACAATCTGCGTGAAACACTGATAAGTCTGAAGAAGGATGGAAGCAATGAACTTGCAGCCTACATCCTAATGCAGAGGATCTTTCCACCAGCATCACTCTGCTATCTAGTCCGAGATGGCACATGCATTCGGGAAAATGCGTTTTCTGAATTTGGAATTTTTGGAGCCTACCTGCGGAACAAAGACAGGGTCATTATAAATGACCAGTGTGGTTATTTGATGAGAACCAAGGCTGCCTCACTGAACGAAGGTGGGGTAGTTGCTGGATACGCATTTTTGAACAGCGTATTCCTGACATGACATGGTAAGACATGCGAAACATGTGTATCGGTTTGAATATGGATAATTCTCCAAGCAGGTTATCAGAGAATTCATAATTTGTATGCTATTACTTTTAGCAGGAATCATACCAATGTTATTTCCATGACACACTTTTTTTTTATTTGGCATGATTTCGCTATCAGCCGAGATTGAGGTACCATTATTCCCATGTATAAAAATGTTATAGCTATCATATTTTAATGTATGAGTATCAATTTGCTTAAAAAAAAGAG]
[+] EMBL AU162470             [                                                                                           GCCGACATAGAAAAAGTTCGGAAATGCTTTGCAGGNCTATGGAGCTTGGAGATTGACAGTATAGTCATGTCTGCTATTG ATCACCCAGAATTGTTTGTTCTGAAGCCACAAAGAGAGGGTGGAGGAAACAACATTTATGGGGACAATCTGCGTGAAACACTGATAAGTCTGAAGAAGGATGGAAGCAATGAACTTGCAGCCTACATCCTAATGCAGAGGATCTTTCCACCAGCATCACTCTGCTATCTAGTCCGAGATGGCACATGCATTCGGGAAAATNCGGTTTCTGAATTTGGAATTTTTGGAGCCT NCTGCGGAACAAAGACAGGGTCATTATAAATGACCAGTGTGGTTATTTGATGAGAACCAAGGCTGCCTCACTGAACGAAGGTGGGGTAGTTGCTGGATACGCATTTTTGAACAGCGTATTCCTGACATGACATGGTAAGACATGCGAAACATGTGTATCGGTTTGAATATGGATAATTCTCCAAGCAGGTTATCAGAGAATTCATAATTTGTATGCTATTACTTTTAGCAGGAATCATACCAATGTTATTTCCATGACACAC TTTTTTTTATTTGGCATGATTTCGCTATCAGCCGAGATTGAGGTACCATTATTCCCATGTATAAAAATGTTATAGCTATCATATTTTAATGTATGAGTATCAATTTGCTTAAAAAAAAaaa]




>consensus_13558#1
CCCATCAATAGCACACCATCTTGTTGGAACCAAAAAGATTCAACAAGAATTGGCAAAAGA
AAATGTGCTCGAAAGGTTTCTTGACAACAAAGCCGACATAGAAAAAGTTCGGAAATGCTT
TGCAGGGCTATGGAGCTTGGAGAATGACAGTATAGTCATGTCTGCTATTGAATCACCAGA
ATTGTTTGTTCTGAAGCCACAAAGAGAGGGTGGAGGAAACAACATTTATGGGGACAATCT
GCGTGAAACACTGATAAGTCTGAAGAAGGATGGAAGCAATGAACTTGCAGCCTACATCCT
AATGCAGAGGATCTTTCCACCAGCATCACTCTGCTATCTAGTCCGAGATGGCACATGCAT
TCGGGAAAATGCGTTTTCTGAATTTGGAATTTTTGGAGCCTACCTGCGGAACAAAGACAG
GGTCATTATAAATGACCAGTGTGGTTATTTGATGAGAACCAAGGCTGCCTCACTGAACGA
AGGTGGGGTAGTTGCTGGATACGCATTTTTGAACAGCGTATTCCTGACATGACATGGTAA
GACATGCGAAACATGTGTATCGGTTTGAATATGGATAATTCTCCAAGCAGGTTATCAGAG
AATTCATAATTTGTATGCTATTACTTTTAGCAGGAATCATACCAATGTTATTTCCATGAC
ACACTTTTTTTTTATTTGGCATGATTTCGCTATCAGCCGAGATTGAGGTACCATTATTCC
CATGTATAAAAATGTTATAGCTATCATATTTTAATGTATGAGTATCAATTTGCTTAAAAA
AAAGAG

consensusID : consensus_13558#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [CGCGTANCTCCACCAACTGCCGTANCGNAACAGCCCAATCGCACCATGGCCGCCGCCGCCGCCCGTTCCGGCGCGCATCCGCCATCGTTCGCCTCCTCGCTCGGCCGGTGCAGGGTTCTTCCAGTCGTGGTGGTGCGTCGGCCGGGCGGTGCCGCGAGGCCGNCACCGCTGCTCGCTCCGGCGAGGTGCGCCGCCGCCGTNGGGACGGCGGCGCCCAAGGTGGAGGGCGGCGGACGGCGGTCGTCGGAGCAGGGGCAGCTGGCGGTGGCGCCGGCGCGGCTGGTGGATGAGCTGGTCGAGGAGGCGCTGGTGTGGTCGTCGCAGCACGGCCTNGTCGTTGGCGACAAGAACCACCCGAGATCAGGAAAAGCTCCCGGTGTTGGTTTGCTCCATGCCCCATTTGCT]

[+] EMBL AU197685             [CGCGTANCTCCACCAACTGCCGTANCGNAACAGCCCAATCGCACCATGGCCGCCGCCGCCGCCCGTTCCGGCGCGCATCCGCCATCGTTCGCCTCCTCGCTCGGCCGGTGCAGGGTTCTTCCAGTCGTGGTGGTGCGTCGGCCGGGCGGTGCCGCGAGGCCGNCACCGCTGCTCGCTCCGGCGAGGTGCGCCGCCGCCGTNGGGACGGCGGCGCCCAAGGTGGAGGGCGGCGGACGGCGGTCGTCGGAGCAGGGGCAGCTGGCGGTGGCGCCGGCGCGGCTGGTGGATGAGCTGGTCGAGGAGGCGCTGGTGTGGTCGTCGCAGCACGGCCTNGTCGTTGGCGACAAGAACCACCCGAGATCAGGAAAAGCTCCCGGTGTTGGTTTGCTCCATGCCCCATTTGCT]




>consensus_13558#2
CGCGTANCTCCACCAACTGCCGTANCGNAACAGCCCAATCGCACCATGGCCGCCGCCGCC
GCCCGTTCCGGCGCGCATCCGCCATCGTTCGCCTCCTCGCTCGGCCGGTGCAGGGTTCTT
CCAGTCGTGGTGGTGCGTCGGCCGGGCGGTGCCGCGAGGCCGNCACCGCTGCTCGCTCCG
GCGAGGTGCGCCGCCGCCGTNGGGACGGCGGCGCCCAAGGTGGAGGGCGGCGGACGGCGG
TCGTCGGAGCAGGGGCAGCTGGCGGTGGCGCCGGCGCGGCTGGTGGATGAGCTGGTCGAG
GAGGCGCTGGTGTGGTCGTCGCAGCACGGCCTNGTCGTTGGCGACAAGAACCACCCGAGA
TCAGGAAAAGCTCCCGGTGTTGGTTTGCTCCATGCCCCATTTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13558#0      CGCCCCTTAAGGAACTCCGATCGAACAGCCCAATCGACCATGGCCGCCGCCGCCGCCCGT 60
consensus_13558#1      ------------------------------------------------------------
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      TCCGGCGCGCATCCGCCATCGTTCGCCTCCTCGCTCGGCCGGTGCAGGGTTCTTCCAGTC 120
consensus_13558#1      ------------------------------------------------------------
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      GTGGTGGTGCGTCGGCCGGGCGGTGCCGCGAGGCCGTCACCGCTGCTCGCTCCGGCGAGG 180
consensus_13558#1      ------------------------------------------------------------
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      TGCGCCGCCGCCGTCGGGACGGCGGCGCCCAAGGTGGAGGGCGGCGGACGGCGGTCGTCG 240
consensus_13558#1      ------------------------------------------------------------
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      GAGCAGGGGCAGCTGGCGGTGGCGCCGGCGCGGCTGGTGGATGAGCTGGTCGAGGAGGCG 300
consensus_13558#1      ------------------------------------------------------------
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      CTGGTGTGGTCGTCGCAGCACGGCCTCGTCGTTGGCGACAAGAACCACCCGAGATCAGGA 360
consensus_13558#1      ------------------------------------------------------------
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      AAAGCTCCCGGTGTTGGTTTGCTCCATGCCCCATTTGCTCTACTGCCAATGTCATTTTCG 420
consensus_13558#1      ------------------------------------------------------------
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      AAAGTTTACTGGGATCAGGCGGTTGAATTGGCTCCCCTTTTCAATGAGCTTGTTGATCGT 480
consensus_13558#1      ------------------------------------------------------------
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      GTTAGTTTGGATGGGGATTTTTTGCAGGAGACTTTGGCAAGAACGAAAGAGGTGGATTCA 540
consensus_13558#1      ------------------------------------------------------------
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      TTCACTGGAAGGCTTCTTGATATCCATGCAAAGATGATGAAACTAAACAAGAAAGAGGAT 600
consensus_13558#1      ------------------------------------------------------------
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      GTTAGGTTGGGTCTTACTAGGTCAGATTACATGATTGATGGGGCCACTGACCAGCTTCTT 660
consensus_13558#1      ------------------------------------------------------------
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      CAAGTTGAACTCAACACCATTTCAACATCATCCAACGGTCTTGCTTGCGGTGTATGTGAA 720
consensus_13558#1      ------------------------------------------------------------
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      CTTCACAGAAACCTGATTAGGCAGCATGAGAGGGAGCTCGGTTTGGATCCAGAGAGTGTT 780
consensus_13558#1      ------------------------------------------------------------
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      GTTGGGAACACAGCAATTGCTCAGCATGCTGAAGCATTAGCTGGAGCATGGGCTGAGTTC 840
consensus_13558#1      ------------------------------------------------------------
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      AACAATCAAAGTTCAGTAGTTCTGGTGGTTGTTCAACCAGAAGAAAGGTACATGTATGAC 900
consensus_13558#1      ------------------------------------------------------------
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      CAATATTGGATAACTGTCGCCTTGAGAGAAATGTATGGGGTGACGACAATTCGCAAAACA 960
consensus_13558#1      ------------------------------------------------------------
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      ATGGCTGCAATAGATGCAGAAGGAGAGCTCCGTCCTGACGGTACACTAACAATAGATGGA 1020
consensus_13558#1      ------------------------------------------------------------
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      TTGCCAGTTGCTGTTGTGTACTTCAGAGCAGGTTATACACCAAATGATTACCCTTCAGAA 1080
consensus_13558#1      ------------------------------------------------------------
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      GCGGAATGGAGAGCAAGACTCTTGATTGAGTGTTCCTCTGCTATTAAGTGCCCATCAATA 1140
consensus_13558#1      --------------------------------------------------CCCATCAATA 10
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      GCACACCATCTTGTTGGAACCAAAAAGATTCAACAAGAATTGGCAAAAGAAAATGTGCTC 1200
consensus_13558#1      GCACACCATCTTGTTGGAACCAAAAAGATTCAACAAGAATTGGCAAAAGAAAATGTGCTC 70
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      GAAAGGTTTCTTGACAACAAAGCCGACATAGAAAAAGTTCGGAAATGCTTTGCAGGGCTA 1260
consensus_13558#1      GAAAGGTTTCTTGACAACAAAGCCGACATAGAAAAAGTTCGGAAATGCTTTGCAGGGCTA 130
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      TGGAGCTTGGAGAATGACAGTATAGTCATGTCTGCTATTGAATCACCAGAATTGTTTGTT 1320
consensus_13558#1      TGGAGCTTGGAGAATGACAGTATAGTCATGTCTGCTATTGAATCACCAGAATTGTTTGTT 190
consensus_13558#2      ------------------------------------CGCGTANCTCCACCAACTGCCGTA 24
                                                              * * * ***  *      ** 

consensus_13558#0      CTGAAGCCACAAAGAGAGGGTGGAGGAAACAACATTTATGGGGACAATCTGCGTGAAACA 1380
consensus_13558#1      CTGAAGCCACAAAGAGAGGGTGGAGGAAACAACATTTATGGGGACAATCTGCGTGAAACA 250
consensus_13558#2      NCGNAACAGCCCAATCGCACCATGGCCGCCGCCGCCGCCCGTTCCGGCGCGCATCCGCCA 84
                         * * *  *  *           *    *  *       *   *     ** *    **

consensus_13558#0      CTGATAAGTCTGAAGAAGGATGGAAGCAATGAACTTGCAGCCTACATCCTAATGCAGA-G 1439
consensus_13558#1      CTGATAAGTCTGAAGAAGGATGGAAGCAATGAACTTGCAGCCTACATCCTAATGCAGA-G 309
consensus_13558#2      TCGTTCGCCTCCTCGCTCGGCCGGTGCAGGGTTCTTCCAGTCGTGGTGGTGCGTCGGCCG 144
                         * *         *   *   *  ***  *  *** *** *    *  *    * *  *

consensus_13558#0      GATCTTTCCACCAGCATCACTCTGCTATCTAGTCCGAGATGGCACAT-GCATTCGGGAAA 1498
consensus_13558#1      GATCTTTCCACCAGCATCACTCTGCTATCTAGTCCGAGATGGCACAT-GCATTCGGGAAA 368
consensus_13558#2      GGCGGTGCCGCGAGGCCGNCACCGCTGCTCGCTCCGGCGAGGTGCGCCGCCGCCGTNGGG 204
                       *    * ** * **     * * ***      ****    **  *   **   **     

consensus_13558#0      ATG-CGGTTTCTGAATTTGGAATTTTTGGA-GCCTACCTGCGGAACAAAGACAGGGTCAT 1556
consensus_13558#1      ATG-CGTTTTCTGAATTTGGAATTTTTGGA-GCCTACCTGCGGAACAAAGACAGGGTCAT 426
consensus_13558#2      ACGGCGGCGCCCAAGGTGGAGGGCGGCGGACGGCGGTCGTCGGAGCAGGGGCAG--CTGG 262
                       * * **    *  *  * *        *** * *   *  **** **  * ***      

consensus_13558#0      TATAAATGACCAGTGTGGTTATTTGATGAGAACCAAGGCTGCCTCACTGAACGAAGGTGG 1616
consensus_13558#1      TATAAATGACCAGTGTGGTTATTTGATGAGAACCAAGGCTGCCTCACTGAACGAAGGTGG 486
consensus_13558#2      CGGTGGCG-CCGGCGCGGCTGGTGGATGAG--------CTGGTCGAGGAGGCGCTGGTGT 313
                              * ** * * ** *  * ******        ***    *     **  **** 

consensus_13558#0      GGTAGTTGCTGGATA-CGCATTTTTGAACAGCGTATTCCTGACATGACATGGTAAGACAT 1675
consensus_13558#1      GGTAGTTGCTGGATA-CGCATTTTTGAACAGCGTATTCCTGACATGACATGGTAAGACAT 545
consensus_13558#2      GGTCGTCGCAGCACGGCCTNGTCGTTGGCGACAAGAACCACCCGAGATCAGGAAAAGCTC 373
                       *** ** ** * *   *    *  *   *  *     **   *  **   ** **  *  

consensus_13558#0      GCGAAACATGTGTATCGGTTTGAAT-ATGGATAATTCTCCAAGCAGGTTATCAGAGAATT 1734
consensus_13558#1      GCGAAACATGTGTATCGGTTTGAAT-ATGGATAATTCTCCAAGCAGGTTATCAGAGAATT 604
consensus_13558#2      CCG--------GTGTTGGTTTGCTCCATGCCCCATTTGCT-------------------- 405
                        **        ** * ******    ***    ***  *                     

consensus_13558#0      CATAATTTGTATGCTATTACTTTTAGCAGGAATCATACCAATGTTATTTCCATGACACAC 1794
consensus_13558#1      CATAATTTGTATGCTATTACTTTTAGCAGGAATCATACCAATGTTATTTCCATGACACAC 664
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      TTTTTTTT-ATTTGGCATGATTTCGCTATCAGCCGAGATTGAGGTACCATTATTCCCATG 1853
consensus_13558#1      TTTTTTTTTATTTGGCATGATTTCGCTATCAGCCGAGATTGAGGTACCATTATTCCCATG 724
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      TATAAAAATGTTATAGCTATCATATTTTAATGTATGAGTATCAATTTGCTTATATTGTCC 1913
consensus_13558#1      TATAAAAATGTTATAGCTATCATATTTTAATGTATGAGTATCAATTTGCTTAAAAAAAAG 784
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      TGAAGTTGATGAGTTTACCGGTCCAGTGCTTTCATTTGAAAAAACAGACATTGTAATTTT 1973
consensus_13558#1      AG---------------------------------------------------------- 786
consensus_13558#2      ------------------------------------------------------------
                                                                                   

consensus_13558#0      GTATGCGAGAGTATGTTGTAATAAAAAAA 2002
consensus_13558#1      -----------------------------
consensus_13558#2      -----------------------------