cluster # 13559

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Oryza sativa
cluster # 13559 cluster # 13559 Sequences # 13 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13559#0 length = 1066 sequences # 9
consensus_13559#1 length = 664 sequences # 1

consensus_13559#2 length = 292 sequences # 1
consensus_13559#3 length = 249 sequences # 1
consensus_13559#4 length = 86 sequences # 1

consensusID : consensus_13559#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1066
fasta sequence

                              [CTCCACCTCTTACCTGACATGTAATAAGCGAGCTGACCAACAAACCCAACCCCGACCCGCGCCGCCGCCCGCCAGCGAGGTCGTCGCCGGCGTCTAAGCTCTCATTCATGGCGGCGGAGGCGGCCTCCGGTGGCGGTGGTGGGTACCGGATGCTGCCGCAGGCGGGGTTGCCGATCGGTTTCCGGTTCCGACCCACCGACGAGGAGCTCCTGCTCCACTACCTCCGCCGCAAGGTCATGTCGCGCCCCCTCCCCGCCGACGTCATCCCCGTCGCCGACCTCGCCCGC-CTCCATCCATGGGACCTTCCAGGCGA-GGGAGACGGCGAGAGGTACTTCTTCCACCTGCCGGCGACGAGCTGCTGGCGGAGGGGCGGCGGCGGGAGCAGGGCGGGCGGCGGCGGCGGCGCGTGGAGGGCGTCCGGGAAGGAGAAGCTCGTCGTCGCGCCGCGCTGCGGCAAGCGGCCCGTCGGCGCCAAGCGGACGCTCGTCTTCTTCCGCCGCGGCGGCGCCCGCACCGACTGGGCCATGCACGAGTACCGCCTCCTCCCCGCCGACGACCATCCGCCGGAGGCCAACGACGTCTGGGTGGTCTGCCGCGTATTCAAGAAGACCACCACGCTGGCTCACCGCCGTTCGCCGCCGTCCATCCGTGGCGCGCCACGCCGGCGAGCCGCCGCCGCCGACGACGACGACATGCCGTCCTCGCCGTCGTCCTGCGTGACGGACGGCGGCGACGCGGGGGAGGAGGGAGAAGAGAGCAGCAGCTGCAGCGTCGTCGCTTCTAATTGTCCATGAGATGATCAGATGAGAGAGGGAGAGGTTTTACCGTGTTAGTGTTTGACTAGGCCGTTAATTACCATGCTTTCATGTCCTAATCAGCGCCCTTCTTTTGCTCTACTAATGTCTTTTAATTAATTAACTAGTTGTAATTCCTAGCAAGAGAGAATCAGAATCGAGCTCAAAC-AAGAAAAGAAAAAAAAAGAAAAGAAAATTCTCATCTTTGTTTGAGCTCAGTCCGAACTCCGAAGATAATCAATTAT--TTGTTTTCAATCTCTTCAAAAAAAAAA]

[+] EMBL AK067450             [CTCCACCTCTTACCTGACATGTAATAAGCGAGCTGACCAACAAACCCAACCCCGACCCGCGCCGCCGCCCGCCAGCGAGGTCGTCGCCGGCGTCTAAGCTCTCATTCATGGCGGCGGAGGCGGCCTCCGGTGGCGGTGGTGGGTACCGGATGCTGCCGCAGGCGGGGTTGCCGATCGGTTTCCGGTTCCGACCCACCGACGAGGAGCTCCTGCTCCACTACCTCCGCCGCAAGGTCATGTCGCGCCCCCTCCCCGCCGACGTCATCCCCGTCGCCGACCTCGCCCGC CTCCATCCATGGGACCTTCCAGGCGA GGGAGACGGCGAGAGGTACTTCTTCCACCTGCCGGCGACGAGCTGCTGGCGGAGGGGCGGCGGCGGGAGCAGGGCGGGCGGCGGCGGCGGCGCGTGGAGGGCGTCCGGGAAGGAGAAGCTCGTCGTCGCGCCGCGCTGCGGCAAGCGGCCCGTCGGCGCCAAGCGGACGCTCGTCTTCTTCCGCCGCGGCGGCGCCCGCACCGACTGGGCCATGCACGAGTACCGCCTCCTCCCCGCCGACGACCATCCGCCGGAGGCCAACGACGTCTGGGTGGTCTGCCGCGTATTCAAGAAGACCACCACGCTGGCTCACCGCCGTTCGCCGCCGTCCATCCGTGGCGCGCCACGCCGGCGAGCCGCCGCCGCCGACGACGACGACATGCCGTCCTCGCCGTCGTCCTGCGTGACGGACGGCGGCGACGCGGGGGAGGAGGGAGAAGAGAGCAGCAGCTGCAGCGTCGTCGCTTCTAATTGTCCATGAGATGATCAGATGAGAGAGGGAGAGGTTTTACCGTGTTAGTGTTTGACTAGGCCGTTAATTACCATGCTTTCATGTCCTAATCAGCGCCCTTCTTTTGCTCTACTAATGTCTTTTAATTAATTAACTAGTTGTAATTCCTAGCAAGAGAGAATCAGAATCGAGCTCAAACAAAGAAGAGAAAAAAAAAGAAAAGAAAATTCTCATCTTTGTTTGAGCTCACTCCGAACTCCGAAGATAATCAATTAT                             ]
[+] EMBL AK068446             [CTCCACCTCTTACCTGACATGTAATAAGCGAGCTGACCAACAAACCCAACCCCGACCCGCGCCGCCGCCCGCCAGCGAGGTCGTCGCCGGCGTCTAAGCTCTCATTCATGGCGGCGGAGGCGGCCTCCGGTGGCGGTGGTGGGTACCGGATGCTGCCGCAGGCGGGGTTGCCGATCGGTTTCCGGTTCCGACCCACCGACGAGGAGCTCCTGCTCCACTACCTCCGCCGCAAGGTCATGTCGCGCCCCCTCCCCGCCGACGTCATCCCCGTCGCCGACCTCGCCCGC CTCCATCCATGGGACCTTCCAGGCGA GGGAGACGGCGAGAGGTACTTCTTCCACCTGCCGGCGACGAGCTGCTGGCGGAGGGGCGGCGGCGGGAGCAGGGCGGGCGGCGGCGGCGGCGCGTGGAGGGCGTCCGGGAAGGAGAAGCTCGTCGTCGCGCCGCGCTGCGGCAAGCGGCCCGTCGGCGCCAAGCGGACGCTCGTCTTCTTCCGCCGCGGCGGCGCCCGCACCGACTGGGCCATGCACGAGTACCGCCTCCTCCCCGCCGACGACCATCCGCCGGAGGCCAACGACGTCTGGGTGGTCTGCCGCGTATTCAAGAAGACCACCACGCTGGCTCACCGCCGTTCGCCGCCGTCCATCCGTGGCGCGCCACGCCGGCGAGCCGCCGCCGCCGACGACGACGACATGCCGTCCTCGCCGTCGTCCTGCGTGACGGACGGCGGCGACGCGGGGGAGGAGGGAGAAGAGAGCAGCAGCTGCAGCGTCGTCGCTTCTAATTGTCCATGAGATGATCAGATGAGAGAGGGAGAGGTTTTACCGTGTTAGTGTTTGACTAGGCCGTTAATTACCATGCTTTCATGTCCTAATCAGCGCCCTT                                                                                                                                                                                        ]
[+] EMBL AF074783             [              TGACATGTAATAAGCGAGCTGACCAACAAACCCAACCCCGACCCGCGCCGCCGCACGCCAGCGAGGTCGTCGCCGGCGTCTAAGCTCTCATTCATGGCGGCGGANGCGGCCTCCGGTGGCGGTGGTGGGTACCGGATGCTGCCGCAGGCGGGGTTGCCGATCGGTTTCCGGTTCCGACCCACCGACGAGGAGCTCCTGCTCCACTACCTCCGCCGCAAGGTCATGTCGCGCCCCCTCCCCGCCGACGTCATCCCCGTCGCCGACCTCGCCCGC CTCCATCCATGGGACCTTCCAGGCGA GGGAGACGGCGANAGGTNCTTCTTCCACCTGCCGGCGACNAACTGCTGGCGGAAGGGCGGCGGCGGGANCAAGGCGGGCGGCGGCGGCGGCGCNTGGANGGCGTCCGGGAAGGANAANCTCGTCGTCGCGCCGCGCTGCGGCAAGCGGCCCGTCGGCGCCAAGCGGACGCTCGTCTTCTTCCGCCGCGGCGGCGCCCGCACCGACTGGGCCATGCACGAATNCCGCCTCCTCCCCGCCGAAGACCATCCGCCGGAAGCCAACGAC TCTGGGTGGTCTGCCGCGTTTTCAANAANA CACCACGCTGGCTCACCGCCGTTCGCCGCCGTCCATCCGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL C27594               [                 CATGTAATAAGCGAGCTGACCAACAAACCCAACCCCGACCCGCGCCGCCGCCCGCCAGCGAGGTCGTCGACGGCGTCTAAGCTCTCATTCATGGCGGCGGAGG GGCTACCGGTNGCGGTGGTGGGTACCGGATGCTGCCG AG  GGGNTTGCCGATCGGTTTCCGGTTCCGACCCACCGACGAGGAGCTCCTNCTCANCTACCTCCGCCGCAA GTCATGTCGCGCCCCCTNCCCGCCGACGTCATCCCCGTCGACGANCTCGCCCGC CTCCATCCATGGGACCTTCCAGGCGAGGGGAGACGGCGAGAGGTACTTCTTCCACCTNCCGGCGACGAGTTGCTtngc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB682477             [                           GCGAGCTGACCAACAAACCCAACCCCGACCCGCGCCGCCGCCCGCCAGCGAGGTCGTCGCCGGCGTCTAAGCTCTCATTCATGGCGGCGGAGGCGGCCTCCGGTGGCGGTGGTGGGTACCGGATGCTGCCGCAGGCGGGGTTGCCGATCGGTTTCCGGTTCCGACCCACCGACGAGGAGCTCCTGCTCCACTACCTCCGCCGCAAGGTCATGTCGCGCCCCCTCCCCGCCGACGTCATCCCCGTCGCCGACCTCGCCCGC CTCCATCCATGGGACCTTCCAGGCGA GGGAGACGGCGAGAGGTACTTCTTCCACCTGCCGGCGACGAGCTGCTGGCGGAGGGGCGGCGGCGGGAGCAGGGCGGGCGGCGGCGGCGGCGCGTGGAGGGCGTCCGGGAAGGAGAAGCTCGTCGTCGCGCCGCGCTGCGGCAAGCGGCCCGTCGGCGCCAAGCGGACGCTCGTCTTCTTCCGCCGCGGCGGCGCCCGCACCGACTGGGCCATGCACGAGTACCGCCTCCTCCCCGCCGACGACCATCCGCCGGAGGCCAACGACGTCTGGGTGGTCTGCCGCGTATTCAAGAAGACCACCACGCTGGCTCACCGCCGTTCGCCGCCGTCCATCCGTGGCGCGCCACGCCGGCGAGCCGCCGCCGCCGACGACGACGACATGCCGTCCTCGCCGTCGTCCTGCGTGACGGACGGCGGCGACGCGGGGGAGGAGGGAGAAGAGAGCAGCAG                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL C28512               [                                   ACCAACAAACCCAACCCCGACCCGGGCCGCCGCCCGCCAGCAAGGTCGTCGCCGGCGTCTAAGCTCTCATTCATGGCGGCGGAGGCGGCCTCCGGTGGCGGTGGTGGGTACCGTATGCTGCCGCANG GGNGTTGCCGATCGGTTTCCGGTTCCNACCCACCGACGAGGAGCTCCTGCTCCACTACCTCCGCCGCAAGGTCATGTNGCGCCCCCTCCCCGCCGACGTCATCCCCGTNGCCGACCTCG CCGCTTTCAATCAATGGGACCTTTCAGGCGA GGGAGACGGCGAGAGGTACTTNTTTCAACTGCGGGCGACGAGTTNCTTGCGGAGGGGCGGCGGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB682478             [                                                                                                                                                                                                                                                                                                                                                                                      aCGCCGTAATCAGGCCGGGCGCAGTCGGTGGGGCCTCGAGGGCGTCCGAGAAGGAGAAGCTTGTGGTTGCGCCGCGCTGCGGCAAGCGGCCAGTGGGCGCCAAGCGGGCGCTTGTCTTTTTCNGACGCGGTGGCGCCCGCACCGACTGGGCCATGCACGAGTACCGCCTCCTCCCCGCCGACGACCATCCGCCGGAGGCCAACGACGTCTGGGTGGTCTGCCGCGTATTCAAGAAGACCACCACGCTGGCTCACCGCCGTTCGCCGCCGTCCATCCGTGGCGCGCCACGCCGGCGAGCCGCCGCCGCCGACGACGACGACATGCCGTCCTCGCCGTCGTCCTGCGTGACGGACGGCGGCGACGCGGGGGAGGAGGGAGAAGAGAGCAGCAGCTGCAGCGTCGTCGCTTCTAATTGTCCATGAGATGATCAGATGAGAGAGGGAGAGGTTTTACCGTGTTAGTGTTTGACTAGGCCGTTAATTACCATGCTTTCATGTCCTAATCAGAGGCCTTCTTTTGCTCTACTAATGTCTTTTAATTAAaaaaaggg                                                                                                                                                   ]
[+] EMBL BI801755             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCGGCGCCTA C GACGCTCTTCTTCTTCC CCGC GCGGCGCCCGCACCGACTGGCCCATGCACGAGTACCGCCTCCTCCCCGCCGACGACCATCC CCGGAGGCCAACGACGTCTGGGTGTTCT CCGCGTATTCAAGAAGACCACCACGCTGGCTCACCGCCGTTCGCC CCGTCCATCCGTGGCGCGCCACGCCGGCGA CCGCCGCCGCCGACGACGACGACATGCCGTCCTCGCCGTCGTCCTGCGTGACGGACGGCGGCGACGCGGGGGAGGAGGGAGAAGAGAGCAGCAGCTGCAGCGTCGTCGCTTCTAATTGTCCATGAGATGATCAGATGAGAGAGGGAGAGGTTTTACCGTGTTAGTGTTTGACTAGGCCGTTAATTACCATGCTTTCATGTCCTAATCAGCGCCCTTCTTTTGCTCTACTAATGTCTTTTAATTAATTAACTAGTTGTAATTCCTAGCAAGAGAGAATCAGAATCGAGCTCAAAC AAGAAAAG AAAAAAAAGAAAAGAAAATTCTCATCTTTGTTTGAGCTCAGTCCGAACTCCGAAGATAATCCATTATCCTTGTTTTCAATCTCTTCAAAAAAAAAA]
[+] EMBL BI800232             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCGTGTTAGTGTTTGACTA GCCGTTAATTACCATGCTTTCATGTCCTAATCAGCGCCCTTCTTTTGCTCTACTAATGTCTTTTAATTAATTAACTAGTTGTAATTCCTAGCAAGAGAGAATCAGAATCGAGCTCAAAC AAGAAAAGAAAAAAAAAGAAAAGAAAATTCTCATCTTTGTTTGAGCTCAGTCCG ACTCCGAAGATAATCAA TATC TTGTTTTCAAaaaa             ]




>consensus_13559#0
CTCCACCTCTTACCTGACATGTAATAAGCGAGCTGACCAACAAACCCAACCCCGACCCGC
GCCGCCGCCCGCCAGCGAGGTCGTCGCCGGCGTCTAAGCTCTCATTCATGGCGGCGGAGG
CGGCCTCCGGTGGCGGTGGTGGGTACCGGATGCTGCCGCAGGCGGGGTTGCCGATCGGTT
TCCGGTTCCGACCCACCGACGAGGAGCTCCTGCTCCACTACCTCCGCCGCAAGGTCATGT
CGCGCCCCCTCCCCGCCGACGTCATCCCCGTCGCCGACCTCGCCCGCCTCCATCCATGGG
ACCTTCCAGGCGAGGGAGACGGCGAGAGGTACTTCTTCCACCTGCCGGCGACGAGCTGCT
GGCGGAGGGGCGGCGGCGGGAGCAGGGCGGGCGGCGGCGGCGGCGCGTGGAGGGCGTCCG
GGAAGGAGAAGCTCGTCGTCGCGCCGCGCTGCGGCAAGCGGCCCGTCGGCGCCAAGCGGA
CGCTCGTCTTCTTCCGCCGCGGCGGCGCCCGCACCGACTGGGCCATGCACGAGTACCGCC
TCCTCCCCGCCGACGACCATCCGCCGGAGGCCAACGACGTCTGGGTGGTCTGCCGCGTAT
TCAAGAAGACCACCACGCTGGCTCACCGCCGTTCGCCGCCGTCCATCCGTGGCGCGCCAC
GCCGGCGAGCCGCCGCCGCCGACGACGACGACATGCCGTCCTCGCCGTCGTCCTGCGTGA
CGGACGGCGGCGACGCGGGGGAGGAGGGAGAAGAGAGCAGCAGCTGCAGCGTCGTCGCTT
CTAATTGTCCATGAGATGATCAGATGAGAGAGGGAGAGGTTTTACCGTGTTAGTGTTTGA
CTAGGCCGTTAATTACCATGCTTTCATGTCCTAATCAGCGCCCTTCTTTTGCTCTACTAA
TGTCTTTTAATTAATTAACTAGTTGTAATTCCTAGCAAGAGAGAATCAGAATCGAGCTCA
AACAAGAAAAGAAAAAAAAAGAAAAGAAAATTCTCATCTTTGTTTGAGCTCAGTCCGAAC
TCCGAAGATAATCAATTATTTGTTTTCAATCTCTTCAAAAAAAAAA

consensusID : consensus_13559#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence

                              [CCTNACATGTNATAAGCGANCTGACCNNCAAACCCNACCCGCNACCCGCGCCGCCGCACTCCAGTCGAGGTCGTCNCCNGCGTCTAAGCTCTCATTCATGGCGAGCGGAGGCGGCCTCCGGTGGCGGTGGTGGGTACCGGATGCTGCCACAAGCGGGGTTGCCGATCGGTTTCCGGTTCCNACCCACCGACGAGGANCTCCTGCTCCACTACCTCCGCCGNAAGGTCTTGTCGCGCCCCCTCCCCGCCGACNTCATCCCCGGTCGCCNACCTCACCCGCCTCCATCCATGGGGACCTTCCAGGCGAGGGANACGGTGAAAGGTNCTTCTTCCACNCTGTCCGGCGGATANAACTGCTGGACGGTAGGGGCGGCGGCATGGAACATGGNGAGGCATGCGGCGGCGGTCNCNTGAGAAAGGCGTCCGGGGAAAAGAAAAAGCTCGTCATCAACGCCGCGCTGACGGCAAANCGGCCCGTCGGCGCCAAANCGGGACGCTCNTCTATCTTCCTGCCGACGGGGTGCGCCCAACAACGACTAGGGTCATGCACGAATTTTCGCCTCCNCCCCNGCCGACNAACCATCCGCCGGGANGCCAACAACATCTGGGTNGTCTGCCGCGTTTTCNAAAAAAACACCCCNCTGGCTCAGCGCNTTTCGCCGCCG]

[+] EMBL AF074784             [CCTNACATGTNATAAGCGANCTGACCNNCAAACCCNACCCGCNACCCGCGCCGCCGCACTCCAGTCGAGGTCGTCNCCNGCGTCTAAGCTCTCATTCATGGCGAGCGGAGGCGGCCTCCGGTGGCGGTGGTGGGTACCGGATGCTGCCACAAGCGGGGTTGCCGATCGGTTTCCGGTTCCNACCCACCGACGAGGANCTCCTGCTCCACTACCTCCGCCGNAAGGTCTTGTCGCGCCCCCTCCCCGCCGACNTCATCCCCGGTCGCCNACCTCACCCGCCTCCATCCATGGGGACCTTCCAGGCGAGGGANACGGTGAAAGGTNCTTCTTCCACNCTGTCCGGCGGATANAACTGCTGGACGGTAGGGGCGGCGGCATGGAACATGGNGAGGCATGCGGCGGCGGTCNCNTGAGAAAGGCGTCCGGGGAAAAGAAAAAGCTCGTCATCAACGCCGCGCTGACGGCAAANCGGCCCGTCGGCGCCAAANCGGGACGCTCNTCTATCTTCCTGCCGACGGGGTGCGCCCAACAACGACTAGGGTCATGCACGAATTTTCGCCTCCNCCCCNGCCGACNAACCATCCGCCGGGANGCCAACAACATCTGGGTNGTCTGCCGCGTTTTCNAAAAAAACACCCCNCTGGCTCAGCGCNTTTCGCCGCCG]




>consensus_13559#1
CCTNACATGTNATAAGCGANCTGACCNNCAAACCCNACCCGCNACCCGCGCCGCCGCACT
CCAGTCGAGGTCGTCNCCNGCGTCTAAGCTCTCATTCATGGCGAGCGGAGGCGGCCTCCG
GTGGCGGTGGTGGGTACCGGATGCTGCCACAAGCGGGGTTGCCGATCGGTTTCCGGTTCC
NACCCACCGACGAGGANCTCCTGCTCCACTACCTCCGCCGNAAGGTCTTGTCGCGCCCCC
TCCCCGCCGACNTCATCCCCGGTCGCCNACCTCACCCGCCTCCATCCATGGGGACCTTCC
AGGCGAGGGANACGGTGAAAGGTNCTTCTTCCACNCTGTCCGGCGGATANAACTGCTGGA
CGGTAGGGGCGGCGGCATGGAACATGGNGAGGCATGCGGCGGCGGTCNCNTGAGAAAGGC
GTCCGGGGAAAAGAAAAAGCTCGTCATCAACGCCGCGCTGACGGCAAANCGGCCCGTCGG
CGCCAAANCGGGACGCTCNTCTATCTTCCTGCCGACGGGGTGCGCCCAACAACGACTAGG
GTCATGCACGAATTTTCGCCTCCNCCCCNGCCGACNAACCATCCGCCGGGANGCCAACAA
CATCTGGGTNGTCTGCCGCGTTTTCNAAAAAAACACCCCNCTGGCTCAGCGCNTTTCGCC
GCCG

consensusID : consensus_13559#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 292
fasta sequence

                              [TAATTACCATGCTTTGATGTCCTAATCAGCGCCCTTCTTTTGCTCTACTAATGTCTTTTAATTAATTAACTAGTTGTAATTCCTAGCAAGAGAGAATCATAATCGAGCTCAAACAATGAAGAGAAAAGCAAAGAAAAGAAAATTCTCATCTTTGTTTGAGCTCACTCCGAACTCCGAAGATAATCAATTATCCTTGTTTTCAATCAATAATACCTTGTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAA]

[+] EMBL CF313939             [TAATTACCATGCTTTGATGTCCTAATCAGCGCCCTTCTTTTGCTCTACTAATGTCTTTTAATTAATTAACTAGTTGTAATTCCTAGCAAGAGAGAATCATAATCGAGCTCAAACAATGAAGAGAAAAGCAAAGAAAAGAAAATTCTCATCTTTGTTTGAGCTCACTCCGAACTCCGAAGATAATCAATTATCCTTGTTTTCAATCAATAATACCTTGTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAA]




>consensus_13559#2
TAATTACCATGCTTTGATGTCCTAATCAGCGCCCTTCTTTTGCTCTACTAATGTCTTTTA
ATTAATTAACTAGTTGTAATTCCTAGCAAGAGAGAATCATAATCGAGCTCAAACAATGAA
GAGAAAAGCAAAGAAAAGAAAATTCTCATCTTTGTTTGAGCTCACTCCGAACTCCGAAGA
TAATCAATTATCCTTGTTTTCAATCAATAATACCTTGTTTTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAA

consensusID : consensus_13559#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 249
fasta sequence

                              [AAGCGAGCTGACCAACAAACCCAACCCCGACCCGCGCCGTCGGCCGCGCTGCGCAANGCGGCCCGTCGGCGCCAAGCGGACGCTCGTTTTCTTCCGCCGCGGCGCGCCCGCACCGACTGGGCCATGCACGAGTACCGCCTCCTCCCCGCCGACGACCATCCGCCGGAGGCAAACGACGTCTGGGTGGTCTGCCGCGTATTCAAGAAGACCACCACGCTGGCTCACCGNCGTTTGCCGNCGTCCATCCGT]

[+] EMBL OS1321730            [AAGCGAGCTGACCAACAAACCCAACCCCGACCCGCGCCGTCGGCCGCGCTGCGCAANGCGGCCCGTCGGCGCCAAGCGGACGCTCGTTTTCTTCCGCCGCGGCGCGCCCGCACCGACTGGGCCATGCACGAGTACCGCCTCCTCCCCGCCGACGACCATCCGCCGGAGGCAAACGACGTCTGGGTGGTCTGCCGCGTATTCAAGAAGACCACCACGCTGGCTCACCGNCGTTTGCCGNCGTCCATCCGT]




>consensus_13559#3
AAGCGAGCTGACCAACAAACCCAACCCCGACCCGCGCCGTCGGCCGCGCTGCGCAANGCG
GCCCGTCGGCGCCAAGCGGACGCTCGTTTTCTTCCGCCGCGGCGCGCCCGCACCGACTGG
GCCATGCACGAGTACCGCCTCCTCCCCGCCGACGACCATCCGCCGGAGGCAAACGACGTC
TGGGTGGTCTGCCGCGTATTCAAGAAGACCACCACGCTGGCTCACCGNCGTTTGCCGNCG
TCCATCCGT

consensusID : consensus_13559#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 86
fasta sequence

                              [GACATGTAATAAGCGAGCTGACCAACAAACCCAACCCCGACCCNCNCCNCCGCCCACCAGCNATGTNGTCNCGNCNTCTAAGCTCT]

[+] EMBL D42534               [GACATGTAATAAGCGAGCTGACCAACAAACCCAACCCCGACCCNCNCCNCCGCCCACCAGCNATGTNGTCNCGNCNTCTAAGCTCT]




>consensus_13559#4
GACATGTAATAAGCGAGCTGACCAACAAACCCAACCCCGACCCNCNCCNCCGCCCACCAG
CNATGTNGTCNCGNCNTCTAAGCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13559#1      ------------CCTNACATGTNATAAGCGANCT--GACCNNCAAACCCN-ACCCGCNAC 45
consensus_13559#4      ---------------GACATGTAATAAGCGAGCT--GACCAACAAACCCA-ACCC-CGAC 41
consensus_13559#3      -------------------------AAGCGAGCT--GACCAACAAACCCA-ACCC-CGAC 31
consensus_13559#0      CTCCACCTCTTACCTGACATGTAATAAGCGAGCT--GACCAACAAACCCA-ACCC-CGAC 56
consensus_13559#2      ---------------------TAATTACCATGCTTTGATGTCCTAATCAGCGCCCTTCTT 39
                                                 * *   **  **    * ** *    ***     

consensus_13559#1      CCGCGCCGCCG--CACTCCAGTCGAGGTCGTCNCCNGCGTCTAAGCTCTCATTCATGGCG 103
consensus_13559#4      CCNCNCCNCCG--CCCACCAG-CNATGTNGTCNC-GNCNTCTAAGCTCT----------- 86
consensus_13559#3      CCGCGCCGTCGGCCGCGCTGCGCAANGCGGCCCGTCGGCGCCAAGCGGACGCTCGTTTTC 91
consensus_13559#0      CCGCGCCGCCG--CCCGCCAG-CGAGGTCGTCGCCGGCGTCTAAGCTCTCATTCATGGCG 113
consensus_13559#2      TTGCTCTACTA---ATGTCTTTTAAT-TAATTAACTAGTTGTAATTCCTAGCAAGAGAGA 95
                          * *                  *                 **                

consensus_13559#1      AGCGGAGGCGGCCTCCGGTGGCGGTGGTGGGTACCGGATGCTGCCACAAGCGGGGTTGCC 163
consensus_13559#4      ------------------------------------------------------------
consensus_13559#3      TTCCGCCGCGGC-----GCGCCCGCACCGACTGGGCCATGCACGAGTACCGCCTCCTCCC 146
consensus_13559#0      -GCGGAGGCGGCCTCCGGTGGCGGTGGTGGGTACCGGATGCTGCCGCAGGCGGGGTTGCC 172
consensus_13559#2      ATCATAATCGAGCTC---AAACAATGAAGAGAAAAGCAAAGAAAAGAAAATTCTCATCTT 152
                                                                                   

consensus_13559#1      GATCGGTTTCCGGTTCCNACCCACCGACGAGGANCTCCTGCTCCACTACCTCCGCCGNAA 223
consensus_13559#4      ------------------------------------------------------------
consensus_13559#3      CGCCGACGACCATCCGCCGGAGGCAAACGACGTCTGGGTGGTCTGCCGCGTATTCAAGAA 206
consensus_13559#0      GATCGGTTTCCGGTTCCGACCCACCGACGAGGAGCTCCTGCTCCACTACCTCCGCCGCAA 232
consensus_13559#2      TGTTTGAGCTCA--CTCCGAACTCCGAAGATAATCAATTATCCTTGTTTTCAATCAATAA 210
                                                                                   

consensus_13559#1      GGTCTTGTCGCGCCCCCTCCCCGCCGACNTCATCCCCGGTCGCCNACCTCACCCGCCTCC 283
consensus_13559#4      ------------------------------------------------------------
consensus_13559#3      GACC--ACCACGCTGGCTCACCGNCG--TTTGCCGNCGTCCATCCGT------------- 249
consensus_13559#0      GGTCATGTCGCGCCCCCTCCCCGCCGACGTCATCCCCG-TCGCCGACCTCGCCCGCCTCC 291
consensus_13559#2      TACCTTGTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 270
                                                                                   

consensus_13559#1      ATCCATGGGGACCTTCCAGGCGAGGGANACGGTGAAAGGTNCTTCTTCCACNCTGTCCGG 343
consensus_13559#4      ------------------------------------------------------------
consensus_13559#3      ------------------------------------------------------------
consensus_13559#0      ATCCATGGG-ACCTTCCAGGCGAGGGAGACGGCGAGAGGTACTTCTTCCACC-------- 342
consensus_13559#2      AAAAAAAAGGAAAAAAAAAAAA-------------------------------------- 292
                                                                                   

consensus_13559#1      CGGATANAACTGCTGGACGGTAGGGGCGGCGGCATGGAACATGGNGAGGCATGCGGCGGC 403
consensus_13559#4      ------------------------------------------------------------
consensus_13559#3      ------------------------------------------------------------
consensus_13559#0      ----TGCCGGCGACGAGCTGCTGGCGGAGGGGCGGCGGCGGGAGCAGGGCGGGCGGCGGC 398
consensus_13559#2      ------------------------------------------------------------
                                                                                   

consensus_13559#1      GGTCNCNTGAGAAAGGCGTCCGGGGAAAAGAAAAAGCTCGTCATCAACGCCGCGCTGACG 463
consensus_13559#4      ------------------------------------------------------------
consensus_13559#3      ------------------------------------------------------------
consensus_13559#0      GGCGGCGCGTGGAGGGCGTCCGGGAAGGAGAAGC------TCGTCGTCGCGCCGCGCTGC 452
consensus_13559#2      ------------------------------------------------------------
                                                                                   

consensus_13559#1      GCAAANCGGCCCGTCGGCGCCAAANCGGGACGCTCNTCTATCTTCCTGCCGACGGGGTGC 523
consensus_13559#4      ------------------------------------------------------------
consensus_13559#3      ------------------------------------------------------------
consensus_13559#0      GGCAAGCGGCCCGTCGGCGCCAAGC--GGACGCTCGTCTTCTTCCGCCGCGGCGGCGCCC 510
consensus_13559#2      ------------------------------------------------------------
                                                                                   

consensus_13559#1      GCCCAACAACGACTAGGGTCATGCACGAATTTTCGCCTCCNCCCCNGCCGACNAACCATC 583
consensus_13559#4      ------------------------------------------------------------
consensus_13559#3      ------------------------------------------------------------
consensus_13559#0      GC------ACCGACTGGGCCATGCACGAGTAC---CGCCTCCTCCCCGCCGACGACCATC 561
consensus_13559#2      ------------------------------------------------------------
                                                                                   

consensus_13559#1      CGCCGGGANGCCAACAACATCTGGGTNGTCTGCCGCGTTTTCNAAAAAAACACCCCNCTG 643
consensus_13559#4      ------------------------------------------------------------
consensus_13559#3      ------------------------------------------------------------
consensus_13559#0      CGCCGG-AGGCCAACGACGTCTGGGTGGTCTGCCGCGTATTCAAGAAGACCACCACGCTG 620
consensus_13559#2      ------------------------------------------------------------
                                                                                   

consensus_13559#1      GCTCAGCGCNTTTCGCCGCCG--------------------------------------- 664
consensus_13559#4      ------------------------------------------------------------
consensus_13559#3      ------------------------------------------------------------
consensus_13559#0      GCTCACCGCCGTTCGCCGCCGTCCATCCGTGGCGCGCCACGCCGGCGAGCCGCCGCCGCC 680
consensus_13559#2      ------------------------------------------------------------
                                                                                   

consensus_13559#1      ------------------------------------------------------------
consensus_13559#4      ------------------------------------------------------------
consensus_13559#3      ------------------------------------------------------------
consensus_13559#0      GACGACGACGACATGCCGTCCTCGCCGTCGTCCTGCGTGACGGACGGCGGCGACGCGGGG 740
consensus_13559#2      ------------------------------------------------------------
                                                                                   

consensus_13559#1      ------------------------------------------------------------
consensus_13559#4      ------------------------------------------------------------
consensus_13559#3      ------------------------------------------------------------
consensus_13559#0      GAGGAGGGAGAAGAGAGCAGCAGCTGCAGCGTCGTCGCTTCTAATTGTCCATGAGATGAT 800
consensus_13559#2      ------------------------------------------------------------
                                                                                   

consensus_13559#1      ------------------------------------------------------------
consensus_13559#4      ------------------------------------------------------------
consensus_13559#3      ------------------------------------------------------------
consensus_13559#0      CAGATGAGAGAGGGAGAGGTTTTACCGTGTTAGTGTTTGACTAGGCCGTTAATTACCATG 860
consensus_13559#2      ------------------------------------------------------------
                                                                                   

consensus_13559#1      ------------------------------------------------------------
consensus_13559#4      ------------------------------------------------------------
consensus_13559#3      ------------------------------------------------------------
consensus_13559#0      CTTTCATGTCCTAATCAGCGCCCTTCTTTTGCTCTACTAATGTCTTTTAATTAATTAACT 920
consensus_13559#2      ------------------------------------------------------------
                                                                                   

consensus_13559#1      ------------------------------------------------------------
consensus_13559#4      ------------------------------------------------------------
consensus_13559#3      ------------------------------------------------------------
consensus_13559#0      AGTTGTAATTCCTAGCAAGAGAGAATCAGAATCGAGCTCAAACAAGAAAAGAAAAAAAAA 980
consensus_13559#2      ------------------------------------------------------------
                                                                                   

consensus_13559#1      ------------------------------------------------------------
consensus_13559#4      ------------------------------------------------------------
consensus_13559#3      ------------------------------------------------------------
consensus_13559#0      GAAAAGAAAATTCTCATCTTTGTTTGAGCTCAGTCCGAACTCCGAAGATAATCAATTATT 1040
consensus_13559#2      ------------------------------------------------------------
                                                                                   

consensus_13559#1      --------------------------
consensus_13559#4      --------------------------
consensus_13559#3      --------------------------
consensus_13559#0      TGTTTTCAATCTCTTCAAAAAAAAAA 1066
consensus_13559#2      --------------------------