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Oryza sativa
cluster # 13565 cluster # 13565       Sequences # 13       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13565#0 length = 614 sequences # 3  
consensus_13565#1 length = 591 sequences # 1  
consensus_13565#2 length = 587 sequences # 8  
consensus_13565#3 length = 526 sequences # 1  

consensusID : consensus_13565#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 614
fasta sequence
                              [AGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCTCATGCCGAGTTCGGCACGAGGCGTCGTCGAAACCCTAGCCGCGCGCGCCGCCGCCTCCTCTCCCGCCCGGCGCCTGCAGCCGTCGTCTTGCCTCGCGCCGCCTCCGGCCGACCGCCGCGCTCCACCAGCGCCGCTGCGTCCGATGGATCCGCAACAACCTGAGCCCGTCAGCTATCTCTGTGGAGATTGCGGAGCTGAGAACACACTGAAGCCAGGAGATGTGATCCAGTGCCGTGAATGTGGCTATCGCATCCTCTACAAGAAGCGTACCCGCCGGATTGTTCAATATGAAGCACGCTGAAGATAAGGGAA--------GGCATCAGTCTTTCTAAAGCAATGTAATGAGTGACCCCTCAAAAGTATGTTAGTGGAACTGTATGGTATTCAGTTGTAGGCCCGTATGGCCATTGGACTTTCGATAGAAGTGGTTAAATCCGAGCTGTGTTTTGAGATTTGAGAAATTTAAGGTGATGCCACGCTTATATTGCCTGAGATCTTGAAATCAAATGCATAGTTTTATTGCAAAAACTAAAAAAAA]

[+] EMBL CB684902             [AGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCTCATGCCGAGTTCGGCACGAGGCGTCGTCGAAACCCTAGCCGCGCGCGCCGCCGCCTCCTCTCCCGCCCGGCGCCTGCAGCCGTCGTCTTGCCTCGCGCCGCCTCCGGCCGACCGCCGCGCTCCACCAGCGCCGCTGCGTCCGATGGATCCGCTACAACCTGAGCCCGTCAGCTATCTCTGTGGAGATTGCGGAGCTGAGAACACACTGAAGCCAGGAGATGTGATCCCCTGCCGTGAATGTGGCTATCGCATCCTCTACAAGAAGCGTACCCGCCGGATTGTTCAGTATGTAGCACGCTGAAGATAAGGGAA        GGCATCTGTCTTTCTAAAGCAATGTAATGAGTGACCCCTCAAAAGTATGTTAGTGGAACTGTATGGTATTCAGTTGTAGGCCCGTATGGCCATTGGACTTTCTATAGAAGTGGTTAAATCCGAGCTGTGTTTTGAGATTTGAGAAATTTAAGGTGATGCCACGCTTATATTGCCTGAGATCTTGAAATCAAATGCATAGTTTTA                   ]
[+] EMBL AU164071             [                                                                                                           GAAACCCTAGCCGCGCGCGCCGCCGCCTCCTCTCCCGCCCGGCGCCTGCAGCCGTCGTCTTGCCTCGCGCCGCCTCCGGCCGACCGCCGCGCTCCACCAGCGCCGCTGCGTCCGATGGATCCGCAACAACCTGAGCCCGTCAGCTATCTCTGTGGAGATTGCGGAGCTGAGAACACACTGAAGCCAGGAGATGTGATCCAGTGCCGTGAATGTGGCTATCGCATCCTCTACAAGAAGCGTACCCGCCGGATTGTTCAATATGAAGCACGCTGAAGATAAGGGAA        GGCATCAGTCTTTCTAAAGCAATGTAATGAGTGACCCCTCAAAAGTATGTTAGTGGAACTGTATGGTATTCAGTTGTAGGCCCGTATGGCCATTGGACTTTCGATAGAAGTGGTTAAATCCGAGCTGTGTTTTGAGATTTGAGAAATTTAAGGTGATGCCACGCTTATATTGCCTGAGATCTTGAAATCAAATGCATAGTTTTATTGCAAAAA          ]
[+] EMBL BI795359             [                                                                                                                                                      GCCTGCA CCGTCGTCTTGCCTCGCACCGCCTCC GCCGACC CCGCGCTCCACCAGCGCCGCTGCGTCCGATGGATCCGCAACAACCTGAGCCCGTCAGCTATCTCTGTGGAGATTGCGGAGCTGAGAACACACTGAAGCCAGGAGATGTGATCCAGTGCCGTGAATGTGGCTATCGCATCCTCTACAAGAAGCGTACCCGCCGGATTGTTC ATATGAAGCACGCTGAAGATAAGGGAACGTCATGTGGCATCAGTCTTTCTAAAGC ATGTAATGAGTGACCCCTC AAAGTATGTTAGTGGAACTGTATGGTATTCAGTTGTAGGCCCGTATGGCCATTGGACTTTCGATAGAAGTGGTTAAATCCGAGCTGTGTTTTGAGATTTGAGAAATTTAAGGTGATGCCACGCTTATATTGCCTGAGATCTTGAAATC AATGCATAGTTTTATTGCAGTTGCTAAAAAAAA]


>consensus_13565#0 AGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGCCTCATGCCGAGTTCGGCACGAGGCGTCGTCGAAACCCTAGCCG CGCGCGCCGCCGCCTCCTCTCCCGCCCGGCGCCTGCAGCCGTCGTCTTGCCTCGCGCCGC CTCCGGCCGACCGCCGCGCTCCACCAGCGCCGCTGCGTCCGATGGATCCGCAACAACCTG AGCCCGTCAGCTATCTCTGTGGAGATTGCGGAGCTGAGAACACACTGAAGCCAGGAGATG TGATCCAGTGCCGTGAATGTGGCTATCGCATCCTCTACAAGAAGCGTACCCGCCGGATTG TTCAATATGAAGCACGCTGAAGATAAGGGAAGGCATCAGTCTTTCTAAAGCAATGTAATG AGTGACCCCTCAAAAGTATGTTAGTGGAACTGTATGGTATTCAGTTGTAGGCCCGTATGG CCATTGGACTTTCGATAGAAGTGGTTAAATCCGAGCTGTGTTTTGAGATTTGAGAAATTT AAGGTGATGCCACGCTTATATTGCCTGAGATCTTGAAATCAAATGCATAGTTTTATTGCA AAAACTAAAAAAAA



consensusID : consensus_13565#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence
                              [TAGCCGCGCGCGCCGCCGCCTCCTCTCCCGCCCGGCGCCTGCAGCCGTCGTCTTGCCTCGCGCCGCCTCCGGCCGACCGCCGCGCTCCACCAGCGCCGCTGCGTCCGATGGATCCGCAACAACCTGAGCCCGTCAGCTATCTCTGTGGAGATTGCGGAGCTGAGAACACACTGAAGCCAGGAGATGTGATCCAGTGCCGTGAATGTGGCTATCGCATCCTCTACAAGAAGCGTACCCGCCGGATTGTTCAATATGAAGCACGCTGAAGATAAGGGAAGGCATCAGTCTTTCTAAAGCAATGTAATGAGTGACCCCTCANAAGTATGTTAGTGGAACTGTATGGTATTCAGTTGTAGGCCCGTATGGCCATTGGACTTTCGATAGAAGTGGTTAAATCCGAGCTGTGTTTTGAGATTTGAGAAATTTAAGGTGATGCCACGCTTATATGGCCAAACCNAACTCGGCGGGGGCCCAGACTGTAATCAAAAAAACTCAAGGGGGGGCCCGGTCCCAATTCCCCCTATAGGGACCGTATTCCCGCGCTCCCTGCCGGCGTTTTTACAACGCGGGACTGGAAAACCCGGGGGTACC]

[+] EMBL CA758818             [TAGCCGCGCGCGCCGCCGCCTCCTCTCCCGCCCGGCGCCTGCAGCCGTCGTCTTGCCTCGCGCCGCCTCCGGCCGACCGCCGCGCTCCACCAGCGCCGCTGCGTCCGATGGATCCGCAACAACCTGAGCCCGTCAGCTATCTCTGTGGAGATTGCGGAGCTGAGAACACACTGAAGCCAGGAGATGTGATCCAGTGCCGTGAATGTGGCTATCGCATCCTCTACAAGAAGCGTACCCGCCGGATTGTTCAATATGAAGCACGCTGAAGATAAGGGAAGGCATCAGTCTTTCTAAAGCAATGTAATGAGTGACCCCTCANAAGTATGTTAGTGGAACTGTATGGTATTCAGTTGTAGGCCCGTATGGCCATTGGACTTTCGATAGAAGTGGTTAAATCCGAGCTGTGTTTTGAGATTTGAGAAATTTAAGGTGATGCCACGCTTATATGGCCAAACCNAACTCGGCGGGGGCCCAGACTGTAATCAAAAAAACTCAAGGGGGGGCCCGGTCCCAATTCCCCCTATAGGGACCGTATTCCCGCGCTCCCTGCCGGCGTTTTTACAACGCGGGACTGGAAAACCCGGGGGTACC]


>consensus_13565#1 TAGCCGCGCGCGCCGCCGCCTCCTCTCCCGCCCGGCGCCTGCAGCCGTCGTCTTGCCTCG CGCCGCCTCCGGCCGACCGCCGCGCTCCACCAGCGCCGCTGCGTCCGATGGATCCGCAAC AACCTGAGCCCGTCAGCTATCTCTGTGGAGATTGCGGAGCTGAGAACACACTGAAGCCAG GAGATGTGATCCAGTGCCGTGAATGTGGCTATCGCATCCTCTACAAGAAGCGTACCCGCC GGATTGTTCAATATGAAGCACGCTGAAGATAAGGGAAGGCATCAGTCTTTCTAAAGCAAT GTAATGAGTGACCCCTCANAAGTATGTTAGTGGAACTGTATGGTATTCAGTTGTAGGCCC GTATGGCCATTGGACTTTCGATAGAAGTGGTTAAATCCGAGCTGTGTTTTGAGATTTGAG AAATTTAAGGTGATGCCACGCTTATATGGCCAAACCNAACTCGGCGGGGGCCCAGACTGT AATCAAAAAAACTCAAGGGGGGGCCCGGTCCCAATTCCCCCTATAGGGACCGTATTCCCG CGCTCCCTGCCGGCGTTTTTACAACGCGGGACTGGAAAACCCGGGGGTACC



consensusID : consensus_13565#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 587
fasta sequence
                              [GAGTAGAAAACCACCACCAACCTCGTCTCGCTTGACAAGAGTCGTCGTCGTCGTCG-AAACCCTAGCCGCGCGCGCCGCCGCCTCCTCTCCCGCCCGGCGCCTGCAGCCGTCGTCTTGCCTCGCGCCGCCTCCGGCCGACCGCCGCGCTCCACCAGCGCCGCTGCGTCCGATGGATCCGCAACAACCTGAGCCCGTCAGCTATCTCTGTGGAGATTGCGGAGCTGAGAACACACTGAAGCCAGGAGATGTGATCCAGTGCCGTGAATGTGGCTATCGCATCCTCTACAAGAAGCGTACCCGCCGGATTGTTCAATATGAAGCACGCTGAAGATAAGGGAAGGCATCA-GTCTTTCTAAAGCAATGTAATGAGTGACCCCTCAAAAGTATGTTAGTGGAACTGTATGGTATTCAGTTGTAGGCCCGTATGGCCA-TTGGACTTTCGATA-GAAGTGGTTAAATCCGAGCTGTGTTTTGAGATTTGAGAAATTTAAGGTGATGCCACGCTTATATTGCCTGAGATCTTGAAATCAAATGCATAGTTTTATTGNNGTTGCNNNNGNGNNGCAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF340145             [GAGTAGAAAACCACCACCAACCTCGTCTCGCTTGACAAGAGTCGTCGTCGTCGTCG AAACCCTAGCCGCGCGCGCCGCCGCCTCCTCTCCCGCCCGGCGCCTGCAGCCGTCGTCTTGCCTCGCGCCGCCTCCGGCCGACCGCCGCGCTCCACCAGCGCCGCTGCGTCCGATGGATCCGCAACAACCTGAGCCCGTCAGCTATCTCTGTGGAGATTGCGGAGCTGAGAACACACTGAAGCCAGGAGATGTGATCCAGTGCCGTGAATGTGGCTATCGCATCCTCTACAAGAAGCGTACCCGCCGGATTGTTCAATATGAAGCACGCTGAAGATAAGGGAAGGCATCA GTCTTTCTAAAGCAATGTAATGAGTGACC                                                                                                                                                                                                                      ]
[+] EMBL CF339667             [                  cACCTCGTCTCGCTTGACAAGAGTCGTCGTCGTCGTCG AAACCCTAGCCGCGCGCGCCGCCGCCTCCTCTCCCGCCCGGCGCCTGCAGCCGTCGTCTTGCCTCGCGCCGCCTCCGGCCGACCGCCGCGCTCCACCAGCGCCGCTGCGTCCGATGGATCCGCAACAACCTGAGCCCGTCAGCTATCTCTGTGGAGATTGCGGAGCTGAGAACACACTGAAGCCAGGAGATGTGATCCAGTGCCGTGAATGTGGCTATCGCATCCTCTACAAGAAGCGTACCCGCCGGATTGTTCAATATGAAGCACGCTGAAGATAAGGGAAGGCATCA GTCTTTCTAAAGCAATGTAATGAGTGACCCCTCAAAAGTATGTTAGTGGAACTGTATGGTATTCAGTTGTAGGCCCGTATGGCCA TTGGACTTTCGATA GAAGTGGTTAAATCCGAGCTGTGTTTTGAGATTTGAGAA                                                                                                       ]
[+] EMBL AU030062             [                                        ccgGTCGTCNTCGTCGAAAACCCTAGCCGCGNGCGCCGCCGCNTCCTCTCCCGCCCGGCGCCTGCAGCCGTCGTCTTNCCTCGCGCC CCTCCGGCCGACCGCCGCGCTCCACCAGCNCCGCTGCGTCCGATGGATCCGCAANAACCTGAGCCCGTCAGCTATCTCTGTGGAGATTGCGGAGCTGAGAACACACTGAAGCCAGGAGATGTGATCCAGTGCCGTGAATGTGG TATCGCATCCTCTACAAGAAGCGTACCCGCCGGATTGTTCAATATGAAGCACGCTGAAGATAAGGGAAGGCATCA GTCTTTCTAAAGCAATGTAATGAGTGACCCCTCAAAAGTATGTTAGTGGAACTGTATGGTATTCAGTTGTAGGCCCGTATGGCCA TTGGACTTTCGATA GAAGTGGTTAAATCCGAGCTGTGTTTTGAGATTTGAGAAATTTAAGGTGATGCCACGCTTATATTGCCTGAGATCTTGAAATCAAATGCATAGTTTTATTGNNGTTGCNNNNGNGNNGCAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL OSC4111              [                                                      CG AAACCCTAGCCGCGCGCGCCGCCGCCTCCTCTCCCGCCCGGCGCCTGCAGCCGTCGTCTTGCCTCGCGCCGCCTCCGGCCGACCGCCGCGCTCCACCAGCGCCGCTGCGTCCGATGGATCCGCAACAACCTGAGCCCGTCAGCTATCTCTGTGGAGATTGCGGAGTTGAGAACACACTGAAGCCAGGAGATGTGATCCAGTGCCGTGAATGTGGCTATCGCATCCTCTACAAGAAGCGTACCCGCCGGATTGTTCAATATGAAGCACGCTGAAGATAAGGGAAGGCATCA GTCTTTCTAAAGCAATGTAATGAGTGACCCCTCAAAAGTATGTTAGTGGGACTGTATGGTATTCAGTTGTAGGNCCNTATGGCCATTTGGACTTTCG TAGGAAGTGGTTAAATCCGAGCTGTGTTTTTAGATTTG GGAANTTAAGGTG                                                                                             ]
[-] EMBL CB664367             [                                                                                                    CCTGCAGCCGTCGTCTTGCCTCGCGCCGCCTCCGGCCGACCGCCGCGCTCCACCAGCGCCGCTGCGTCCGATGGATCCGCAACAACCTGAGCCCGTCAGCTATCTCTGTGGAGATTGCGGAGCTGAGAACACACTGAAGCCAGGAGATGTGATCCAGTGCCGTGAATGTGGCTATCGCATCCTCTACAAGAAGCGTACCCGCCGGATTGTTCAATATGAAGCACGCTGAAGATAAGGGAAGGCATCA GTCTTTCTAAAGCAATGTAATGAGTGACCCCTCAAAAGTATGTTAGTGGAACTGTATGGTATTCAGTTGTAGGCCCGTATGGCCA TTGGACTTTCGATA GAAGTGGTTAAATCCGAGCTGTGTTTTGAGATTTGAGAAATTTAAGGTGATGCCACGCTTATATTGCCT                                                                         ]
[-] EMBL CB664406             [                                                                                                     CTGCAGCCGTCGTCTTGCCTCGCGCCGCCTCCGGCCGACCGCCGCGCTCCACCAGCGCCGCTGCGTCCGATGGATCCGCAACAACCTGAGCCCGTCAGCTATCTCTGTGGAGATTGCGGAGCTGAGAACACACTGAAGCCAGGAGATGTGATCCAGTGCCGTGAATGTGGCTATCGCATCCTCTACAAGAAGCGTACCCGCCGGATTGTTCAATATGAAGCACGCTGAAGATAAGGGAAGGCATCA GTCTTTCTAAAGCAATGTAATGAGTGACCCCTCAAAAGTATGTTAGTGGAACTGTATGGTATTCAGTTGTAGGCCCGTATGGCCA TTGGACTTTCGATA GAAGTGGTTAAATCCGAGCTGTGTTTTGAGATTTGAGAAATTTAAGGTGATGCCACGCTTATATTGCCT                                                                         ]
[+] EMBL CB681454             [                                                                                                                                                                                                                                                                                      ATCCTCTACAAGAAGCGTACCCGCCGGATTGTTCAATATGAAGCACGCTGAAGATAAGGGAAGGCATCAGGTCTTTCTAAAGCAATGTAATGAGTGACCCCTCAAAAGTATGTTAGTGGAACTGTATGGTATTCAGTTGTAGGCCCGTATGGCCA TTGGACTTTCGATA GAAGTGGTTAAATCCGAGCTGTGTTTTGAGATTTGAGAAATTTAAGGTGATGCCACGCTT                                                                                  ]
[+] EMBL CB684552             [                                                                                                                                                                                                                                                                                      ATCCCCTACAAGAAGCGTACCCGCCGGATTGTTCAATATGAAGCACGCTGAAGATAAGGGAAGGCATCAGGTCTTTCTAAAGCAATGTAATGAGTGACCCCTCAAAAGTATGTTAGTGGAACTGTATGGTATTCAGTTGTAGGCCCGTATGGCCA TTGGACTTTCGATA GAAGTGGTTAAATCCGAGCTGTGTTTTGAGATTTGAGAAATTTAAGGTGATGCCACGCTT                                                                                  ]


>consensus_13565#2 GAGTAGAAAACCACCACCAACCTCGTCTCGCTTGACAAGAGTCGTCGTCGTCGTCGAAAC CCTAGCCGCGCGCGCCGCCGCCTCCTCTCCCGCCCGGCGCCTGCAGCCGTCGTCTTGCCT CGCGCCGCCTCCGGCCGACCGCCGCGCTCCACCAGCGCCGCTGCGTCCGATGGATCCGCA ACAACCTGAGCCCGTCAGCTATCTCTGTGGAGATTGCGGAGCTGAGAACACACTGAAGCC AGGAGATGTGATCCAGTGCCGTGAATGTGGCTATCGCATCCTCTACAAGAAGCGTACCCG CCGGATTGTTCAATATGAAGCACGCTGAAGATAAGGGAAGGCATCAGTCTTTCTAAAGCA ATGTAATGAGTGACCCCTCAAAAGTATGTTAGTGGAACTGTATGGTATTCAGTTGTAGGC CCGTATGGCCATTGGACTTTCGATAGAAGTGGTTAAATCCGAGCTGTGTTTTGAGATTTG AGAAATTTAAGGTGATGCCACGCTTATATTGCCTGAGATCTTGAAATCAAATGCATAGTT TTATTGNNGTTGCNNNNGNGNNGCAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_13565#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence
                              [GAGAGAGAGAGAGAGAGAGAGACCCTCTTCCCGAATTGGGCACGAGGGGTTGTGGAAACCTTAGCGGGGGGCGCCGCCGCTTCTTTTCCCGCCGGGCGCCTGCAGCCGTCGTTTTGCCTCGGGCCGCCTCCGGCCGACCGCCGCGTTCCACCAGCGCCGCTGCGTCCGATGGATCCGCAACACCCTGAGCCCGTCAGTTATTTTTGTGGAGATTGCGGAGCGGAGACCCCACTGAAGCCAGGAGATGTGATCCAGTGCCGTGAATGTGGTTATCGCATCCTTTACAAGAAGGGTACCCGCCGGATTGTTCAATATGAAGCCCGCTGAAGATAAGGGAAGGCATCAGTCTTTTTAAAGCAATGTAAGGAGTGCCCCCTCAAAAGTATGTTAGTGGAACTGTATGGTATTCAGTTGTAGGCCCGTATGGCCATTGGACTTTCGATAGAAGTGGTTAAATCCGAGCGGTGTTTTGAGTTTTGAGAAATTTAAGGTGATGCCCCGTTTATATTCCTGGAGATCTGTAAAT]

[-] EMBL CB684903             [GAGAGAGAGAGAGAGAGAGAGACCCTCTTCCCGAATTGGGCACGAGGGGTTGTGGAAACCTTAGCGGGGGGCGCCGCCGCTTCTTTTCCCGCCGGGCGCCTGCAGCCGTCGTTTTGCCTCGGGCCGCCTCCGGCCGACCGCCGCGTTCCACCAGCGCCGCTGCGTCCGATGGATCCGCAACACCCTGAGCCCGTCAGTTATTTTTGTGGAGATTGCGGAGCGGAGACCCCACTGAAGCCAGGAGATGTGATCCAGTGCCGTGAATGTGGTTATCGCATCCTTTACAAGAAGGGTACCCGCCGGATTGTTCAATATGAAGCCCGCTGAAGATAAGGGAAGGCATCAGTCTTTTTAAAGCAATGTAAGGAGTGCCCCCTCAAAAGTATGTTAGTGGAACTGTATGGTATTCAGTTGTAGGCCCGTATGGCCATTGGACTTTCGATAGAAGTGGTTAAATCCGAGCGGTGTTTTGAGTTTTGAGAAATTTAAGGTGATGCCCCGTTTATATTCCTGGAGATCTGTAAAT]


>consensus_13565#3 GAGAGAGAGAGAGAGAGAGAGACCCTCTTCCCGAATTGGGCACGAGGGGTTGTGGAAACC TTAGCGGGGGGCGCCGCCGCTTCTTTTCCCGCCGGGCGCCTGCAGCCGTCGTTTTGCCTC GGGCCGCCTCCGGCCGACCGCCGCGTTCCACCAGCGCCGCTGCGTCCGATGGATCCGCAA CACCCTGAGCCCGTCAGTTATTTTTGTGGAGATTGCGGAGCGGAGACCCCACTGAAGCCA GGAGATGTGATCCAGTGCCGTGAATGTGGTTATCGCATCCTTTACAAGAAGGGTACCCGC CGGATTGTTCAATATGAAGCCCGCTGAAGATAAGGGAAGGCATCAGTCTTTTTAAAGCAA TGTAAGGAGTGCCCCCTCAAAAGTATGTTAGTGGAACTGTATGGTATTCAGTTGTAGGCC CGTATGGCCATTGGACTTTCGATAGAAGTGGTTAAATCCGAGCGGTGTTTTGAGTTTTGA GAAATTTAAGGTGATGCCCCGTTTATATTCCTGGAGATCTGTAAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13565#0      AGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 60
consensus_13565#3      -----------------------------------------------------GAGAGAG 7
consensus_13565#2      -----------------------------------------------------GAGTAGA 7
consensus_13565#1      ------------------------------------------------------------
                                                                                   

consensus_13565#0      AGAGAGAGAGAGAGAGCCTCATGCCGAGTTCGGCACGAGG-CGTCGTCGAAACCCTAGCC 119
consensus_13565#3      AGAGAGAGAGAGAGACCCTCTTCCCGAATTGGGCACGAGG-GGTTGTGGAAACCTTAGCG 66
consensus_13565#2      AAACCACCACCAACCTCGTCTCGCTTGACAAGAGTCGTCGTCGTCGTCGAAACCCTAGCC 67
consensus_13565#1      -------------------------------------------------------TAGCC 5
                                                                              **** 

consensus_13565#0      GCGCGCGCCGCCGCCTCCTCTCCCGCCCGGCGCCTGCAGCCGTCGTCTTGCCTCGCGCCG 179
consensus_13565#3      GGGGGCGCCGCCGCTTCTTTTCCCGCCGGGCGCCTGCAGCCGTCGTTTTGCCTCGGGCCG 126
consensus_13565#2      GCGCGCGCCGCCGCCTCCTCTCCCGCCCGGCGCCTGCAGCCGTCGTCTTGCCTCGCGCCG 127
consensus_13565#1      GCGCGCGCCGCCGCCTCCTCTCCCGCCCGGCGCCTGCAGCCGTCGTCTTGCCTCGCGCCG 65
                       * * ********** ** * ******* ****************** ******** ****

consensus_13565#0      CCTCCGGCCGACCGCCGCGCTCCACCAGCGCCGCTGCGTCCGATGGATCCGCAACAACCT 239
consensus_13565#3      CCTCCGGCCGACCGCCGCGTTCCACCAGCGCCGCTGCGTCCGATGGATCCGCAACACCCT 186
consensus_13565#2      CCTCCGGCCGACCGCCGCGCTCCACCAGCGCCGCTGCGTCCGATGGATCCGCAACAACCT 187
consensus_13565#1      CCTCCGGCCGACCGCCGCGCTCCACCAGCGCCGCTGCGTCCGATGGATCCGCAACAACCT 125
                       ******************* ************************************ ***

consensus_13565#0      GAGCCCGTCAGCTATCTCTGTGGAGATTGCGGAGCTGAGAACACACTGAAGCCAGGAGAT 299
consensus_13565#3      GAGCCCGTCAGTTATTTTTGTGGAGATTGCGGAGCGGAGACCCCACTGAAGCCAGGAGAT 246
consensus_13565#2      GAGCCCGTCAGCTATCTCTGTGGAGATTGCGGAGCTGAGAACACACTGAAGCCAGGAGAT 247
consensus_13565#1      GAGCCCGTCAGCTATCTCTGTGGAGATTGCGGAGCTGAGAACACACTGAAGCCAGGAGAT 185
                       *********** *** * ***************** **** * *****************

consensus_13565#0      GTGATCCAGTGCCGTGAATGTGGCTATCGCATCCTCTACAAGAAGCGTACCCGCCGGATT 359
consensus_13565#3      GTGATCCAGTGCCGTGAATGTGGTTATCGCATCCTTTACAAGAAGGGTACCCGCCGGATT 306
consensus_13565#2      GTGATCCAGTGCCGTGAATGTGGCTATCGCATCCTCTACAAGAAGCGTACCCGCCGGATT 307
consensus_13565#1      GTGATCCAGTGCCGTGAATGTGGCTATCGCATCCTCTACAAGAAGCGTACCCGCCGGATT 245
                       *********************** *********** ********* **************

consensus_13565#0      GTTCAATATGAAGCACGCTGAAGATAAGGGAAGGCATCAGTCTTTCTAAAGCAATGTAAT 419
consensus_13565#3      GTTCAATATGAAGCCCGCTGAAGATAAGGGAAGGCATCAGTCTTTTTAAAGCAATGTAAG 366
consensus_13565#2      GTTCAATATGAAGCACGCTGAAGATAAGGGAAGGCATCAGTCTTTCTAAAGCAATGTAAT 367
consensus_13565#1      GTTCAATATGAAGCACGCTGAAGATAAGGGAAGGCATCAGTCTTTCTAAAGCAATGTAAT 305
                       ************** ****************************** ************* 

consensus_13565#0      GAGTGACCCCTCAAAAGTATGTTAGTGGAACTGTATGGTATTCAGTTGTAGGCCCGTATG 479
consensus_13565#3      GAGTGCCCCCTCAAAAGTATGTTAGTGGAACTGTATGGTATTCAGTTGTAGGCCCGTATG 426
consensus_13565#2      GAGTGACCCCTCAAAAGTATGTTAGTGGAACTGTATGGTATTCAGTTGTAGGCCCGTATG 427
consensus_13565#1      GAGTGACCCCTCANAAGTATGTTAGTGGAACTGTATGGTATTCAGTTGTAGGCCCGTATG 365
                       ***** ******* **********************************************

consensus_13565#0      GCCATTGGACTTTCGATAGAAGTGGTTAAATCCGAGCTGTGTTTTGAGATTTGAGAAATT 539
consensus_13565#3      GCCATTGGACTTTCGATAGAAGTGGTTAAATCCGAGCGGTGTTTTGAGTTTTGAGAAATT 486
consensus_13565#2      GCCATTGGACTTTCGATAGAAGTGGTTAAATCCGAGCTGTGTTTTGAGATTTGAGAAATT 487
consensus_13565#1      GCCATTGGACTTTCGATAGAAGTGGTTAAATCCGAGCTGTGTTTTGAGATTTGAGAAATT 425
                       ************************************* ********** ***********

consensus_13565#0      TAAGGTGATGCCACGCTTATATTGCCTGA--GATCTTGAAATCAAATGCATAGTTTTATT 597
consensus_13565#3      TAAGGTGATGCCCCGTTTATATTCCTGGA--GATCTGTAAAT------------------ 526
consensus_13565#2      TAAGGTGATGCCACGCTTATATTGCCTGA--GATCTTGAAATCAAATGCATAGTTTTATT 545
consensus_13565#1      TAAGGTGATGCCACGCTTATATGGCCAAACCNAACTCGGCGG-GGGCCCAGACTGTAATC 484
                       ************ ** ******  *   *   * **                        

consensus_13565#0      GCAAAAACTAAAAAAAA------------------------------------------- 614
consensus_13565#3      ------------------------------------------------------------
consensus_13565#2      GNNGTTGCNNNNGNGNNGCAAAAAAAAAAAAAAAAAAAAAAA------------------ 587
consensus_13565#1      AAAAAAACTCAAGGGGGGGCCCGGTCCCAATTCCCCCTATAGGGACCGTATTCCCGCGCT 544
                                                                                   

consensus_13565#0      -----------------------------------------------
consensus_13565#3      -----------------------------------------------
consensus_13565#2      -----------------------------------------------
consensus_13565#1      CCCTGCCGGCGTTTTTACAACGCGGGACTGGAAAACCCGGGGGTACC 591
                                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)