These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13574#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2279 fasta sequence [CGGCGCAGGCTGCGGCGGAGGCGGCGGTGGGCGCGATCGGGTGCGGGTACGACCTCACGAGCGACCTCCGCCTCAGCCGCGTCAAGGCGGGCGGGAGGCTGGTGGACATCGACGGGGCGAGCGGCGCGGCGAGACGGGAGCTGGTCCTCCCCTGGGGAGCCGTCGTGGGGGGCGTGCCGGTGGGGATCGTCGCCGACAAGGGGGAGCGCACCCGGTTCCGCTCCGACGTCCTCTCCTTCGCTCAGATGGCGGAGCAGGTGAACCAGACGATGTCGGTGGCGGGGAAGATCCCGTCGGGCGCGTTCAACGCCATGTTCGACTATCACGGGTGCTGGCACAAGGACGCGGCCGCCACGGGGAGCCTCTGCTTCGACGGCCGCTTCATCGAGCTCTACGCCGTCGAGGCCCCCCGCGCGCACCTCGCCCTGCTCGACCGCGTCAAGCGCGACGTCCCGCCCTTCTGGGACCCCGCTGCTCTCGCCGAATTCATCGACAAGTACGGGACGCACGTCATCGCCGGGGTGAAGATGGGAGGGAAGGATGTGGTCTGCATCAAGCAGCTCAAGGGATCCAATCTCACACAGAGCGATGTGCAGTCTCGGCTCAAGAAACTCTCCGACGACAAGCTCGCTCAGGATTCACCTGAAAGTTTAACTGCAAGAGACGACAAGTTCTTGCTGGGATTAAACGGGAGTTTATTATTGGGTCCTGGATCTGCTGCTTGGCGGTCGTTCAGACCATCAGTCGTGTCACACAAAGATGACATCCTCAGTATCCACATCAGAAGAGGGGGCGTTGATAATGGCCAAGGCCACAGTAATTGGCTTTCGACGATCAGCGGTTCACCGGACGTCATCTCTATGGCTT-TTGTGCCGATTACTTCTCT-GCTCACTGGTGTTCGAGGCTGCGGGTTCCT-GAATCATGCAGTGAACCTCTACCTCAGATACAAACCTCCAATAGAGGAACTCCATCAATTTCTGGAATTCCAGGTGCCACGACAATGGGCTCCAGAGTTTGGGGAGCTCCCTCTGGCTTTGGGCCCGAGAAAGAAGAAGAACAGCCTGCCATCTCTTCAGTTTACTCTCATGGGTCCTAAGCTTCATGTCACCACTGCCAAGGCTGATTCTGGGAATCGTCCGGTGACCGGCATTCGGCTGTTCCTGGAAGGCAAGAAGAACAACCGGCTGGGCGTTCACCTACAGCATTTGTCAGCGACGCCGGGCACGATCACGATCGCCGGCGAGGTGGCGTCGGCGGAGGACGCCACCGTGAGGGAGCGCGACTACATCGAGCCCATCAAGTCGCCGCTGCTGTCGCACGTGTGCACGGCGCCGGTGCAGTACAACGGCGCGCGGATCGACGACTGCGCGGCGATCGTGACGAGGGCGTGGCTGGAGGTGCAGGAGACGTGCCTCAAGAAGGTGCTCTTCCTGCGGCTGGGCTTCTCCGGCGTGGCATCCACCAAGATCCGGCGGTCGGAGTGGGATGGCCCGTTCGTCGTGTCACGCAAGTCGGGCTCGCTGTCGGCATTGTTCAGCGCGCGGCTGTCCGCCGCCGGTGCCGGTGGCTCCGCGCAGATGATGCAGCAGCAGCAGCCGGTGGGGGAG-AAGGTGGAGGTGAACTCCGCCATCTTCCCCAAGGGCCCGCCGGTGCCTCTCCCGGTGCAGAGGATGGCGAGGTACGTCGACACAACGGAGGTGATGAGGGGCCCCGCCGACTTGCCGGGGTACTGGGTGGTCACCGGCGCGAAGCTCTGCATCGAAGGCGGCAAAGTTGCACTCAAGGTCAAGTACTCGCTGCTCATCGCGGAGGTGCTAGACTACCCTGAGTGACTGTTGAGAAGAACTGCACGGTGTGTGCATCTTTTTGGCTCGTTTGTGATGCTGTTGTGTACAGTACAGTACAGTACAGGATGTAACTGGTTCAATGGAAGGAGAGAGAGAAGACACCGGCATGGTTGAGGGTCGAAGAGGAGACGAGATCGTCCAATCGATGGCTAGTTGCAAGCGCATGATTAGTTATTTATGTAGTTCACAAATTTGTTGAATAAGGGGTTGAATCGAGATCTCCTATATGTTTTTTGTTCTAGGGTTTGAATGGTGCACCCACAAGGAGACACGGTCGTGGAATATTTCATCTTTCTAGGAATAAATCGATAAAATGTGTAACTTAAATCGATGCAAATCTTCGGTGATATTTTAACCAATCATGTTTGTGAAACACAATATAAATCTCTTCTTGTAAAACAAAATATATATCTCAAAAGAAATAAAGGGAGG] [+] EMBL AK069566 [CGGCGCAGGCTGCGGCGGAGGCGGCGGTGGGCGCGATCGGGTGCGGGTACGACCTCACGAGCGACCTCCGCCTCAGCCGCGTCAAGGCGGGCGGGAGGCTGGTGGACATCGACGGGGCGAGCGGCGCGGCGAGACGGGAGCTGGTCCTCCCCTGGGGAGCCGTCGTGGGGGGCGTGCCGGTGGGGATCGTCGCCGACAAGGGGGAGCGCACCCGGTTCCGCTCCGACGTCCTCTCCTTCGCTCAGATGGCGGAGCAGGTGAACCAGACGATGTCGGTGGCGGGGAAGATCCCGTCGGGCGCGTTCAACGCCATGTTCGACTATCACGGGTGCTGGCACAAGGACGCGGCCGCCACGGGGAGCCTCTGCTTCGACGGCCGCTTCATCGAGCTCTACGCCGTCGAGGCCCCCCGCGCGCACCTCGCCCTGCTCGACCGCGTCAAGCGCGACGTCCCGCCCTTCTGGGACCCCGCTGCTCTCGCCGAATTCATCGACAAGTACGGGACGCACGTCATCGCCGGGGTGAAGATGGGAGGGAAGGATGTGGTCTGCATCAAGCAGCTCAAGGGATCCAATCTCACACAGAGCGATGTGCAGTCTCGGCTCAAGAAACTCTCCGACGACAAGCTCGCTCAGGATTCACCTGAAAGTTTAACTGCAAGAGACGACAAGTTCTTGCTGGGATTAAACGGGAGTTTATTATTGGGTCCTGGATCTGCTGCTTGGCGGTCGTTCAGACCATCAGTCGTGTCACACAAAGATGACATCCTCAGTATCCACATCAGAAGAGGGGGCGTTGATAATGGCCAAGGCCACAGTAATTGGCTTTCGACGATCAGCGGTTCACCGGACGTCATCTCTATGGCTT TTGTGCCGATTACTTCTCT GCTCACTGGTGTTCGAGGCTGCGGGTTCCT GAATCATGCAGTGAACCTCTACCTCAGATACAAACCTCCAATAGAGGAACTCCATCAATTTCTGGAATTCCAGGTGCCACGACAATGGGCTCCAGAGTTTGGGGAGCTCCCTCTGGCTTTGGGCCCGAGAAAGAAGAAGAACAGCCTGCCATCTCTTCAGTTTACTCTCATGGGTCCTAAGCTTCATGTCACCACTGCCAAGGCTGATTCTGGGAATCGTCCGGTGACCGGCATTCGGCTGTTCCTGGAAGGCAAGAAGAACAACCGGCTGGGCGTTCACCTACAGCATTTGTCAGCGACGCCGGGCACGATCACGATCGCCGGCGAGGTGGCGTCGGCGGAGGACGCCACCGTGAGGGAGCGCGACTACATCGAGCCCATCAAGTCGCCGCTGCTGTCGCACGTGTGCACGGCGCCGGTGCAGTACAACGGCGCGCGGATCGACGACTGCGCGGCGATCGTGACGAGGGCGTGGCTGGAGGTGCAGGAGACGTGCCTCAAGAAGGTGCTCTTCCTGCGGCTGGGCTTCTCCGGCGTGGCATCCACCAAGATCCGGCGGTCGGAGTGGGATGGCCCGTTCGTCGTGTCACGCAAGTCGGGCTCGCTGTCGGCATTGTTCAGCGCGCGGCTGTCCGCCGCCGGTGCCGGTGGCTCCGCGCAGATGATGCAGCAGCAGCAGCCGGTGGGGGAG AAGGTGGAGGTGAACTCCGCCATCTTCCCCAAGGGCCCGCCGGTGCCTCTCCCGGTGCAGAGGATGGCGAGGTACGTCGACACAACGGAGGTGATGAGGGGCCCCGCCGACTTGCCGGGGTACTGGGTGGTCACCGGCGCGAAGCTCTGCATCGAAGGCGGCAAAGTTGCACTCAAGGTCAAGTACTCGCTGCTCATCGCGGAGGTGCTAGACTACCCTGAGTGACTGTTGAGAAGAACTGCACGGTGTGTGCATCTTTTTGGCTCGTTTGTGATGCTGTTGTGTACAGTACAGTACAGTACAGGATGTAACTGGTTCAATGGAAGGAGAGAGAGAAGACACCGGCATGGTTGAGGGTCGAAGAGGAGACGAGATCGTCCAATCGATGGCTAGTTGCAAGCGCATGATTAGTTATTTATGTAGTTCACAAATTTGTTGAATAAGGGGTTGAATCGAGATCTCCTATATGTTTTTTGTTCTAGGGTTTGAATGGTGCACCCACAAGGAGACACGGTCGTGGAATATTTCATCTTTCTAGGAATAAATCGATAAAATGTGTAACTTAAATCGATGCAAATCTTCGGTGATATTTTAACCAATCATGTTTGTGAAACACAATATAAATCTCTTCTTGTAAAACAAAATATATATCTCAAAAGAAATAAAGGGAGG] [+] EMBL CB637610 [ TCCGCTCCGACGTCCTCTCCTTCGCTCAGATGGCGGAGCAGGTGAACCAGACGATGTCGGTGGCGGGGAAGATCCCGTCGGGCGCGTTCAACGCCATGTTCGACTACCACGGGTGCTGGCACAAGGACGCGGCCGCCACGGGGAGCCTCTGCTTCGACGGCCGCTTCATCGAGCTCTACGCCGTCGAGGCCCCCCGCGCGCACCTCGCCCTGCTCGACCGCGTCAAGCGCGACGTCCCGCCCTTCTGGGACCCCGCTGCTCTCGCCGAATTCATCGACAAGTACGGGACGCACGTCATCGCCGGGGTGAAGATGGGAGGGAAGGATGTGGTCTGCATCAAGCAGCTCAAGGGATCCAATCTCACACAGAGCGATGTGCAGTCTCGGCTCAAGAAACTCTCCGACGACAAGCTCGCTCAGGATTCACCTGAAAGTTTAACTGCAAGAGACGACAAGTTCTTGCTGGGATTAAACGGGAGTTTATTATTGGGTCCTGGATCTGCTGCTTGGCGGTCGTTCAAACCATCAGTCGTGTCACACAAAGA ] [+] EMBL BU667119 [ TGCTTCGACGGCCGCTTCGTCGAGCTCTAGGCCGTCGAGGCCCCCCGCGCGCACCTCGCCCTGCTCGACCGCGTCAAGCGCGACGTCCCGCCCTTCTGGGACCCCGCTGCTCTCGCCGAATTCATCGACAAGTACGGGACGCACGTCATCGCCGGGGTGAAGATGGGAGGGAAGGATGTGGTCTGCATCAAGCAGCTCAAGGGATCCAATCTCACACAGAGCGATGTGCAGTCTCGGCTCAAGAAACTCTCCGACGACAAGCTCGCTCAGGATTCACCTGAAAGTTTAACTGCAAGAGACGACAAGTTCTTGCTGGGATTAAACGGGAGTTTATTATTGGGTCCTGGATCTGCTGCTTGGCGGTCGTTCAGACCATCAGTCATGTCACACAAAGATGACATCGTCAGTATCCACATCAGAAGAGGGGGCGTTGATAATGGCCAAGGCCACAGTAAATGGCTTTCGACGATCAGCGGTTCACCGGACGTCATCTCTATGGCTTACAGTGCCGATTACTTCTCTGGCTCACTGGTGGTCGAGGCTGCGGGTTCCTGGAATCATGCAGTGAA ] [+] EMBL CB661345 [ GCGGTTCACCGGACGTCATCTCTATGGCTT TTGTGCCGATTACTTCTCT GCTCACTGGTGTTCGAGGCTGCGGGTTCCT GAATCATGCAGTGAACCTCTACCTCAGATACAAACCTCCAATAGAGGAACTCCATCAATTTCTGGAATTCCAGGTGCCACGACAATGGGCTCCAGAGTTTGGGGAGCTCCCTCTGGCTTTGGGCCCGAGAAAGAAGAAGAACAGCCTGCCATCTCTTCAGTTTACTCTCATGGGTCCTAAGCTTCATGTCACCACTGCCAAGGCTGATTCTGGGAATCGTCCGGTGACCGGCATTCGGCTGTTCCTGGAAGGCAAGAAGAACAACCGGCTGGGCGTTCACCTACAGCATTTGTCAGCGACGCCGGGCACGATCACGATCGCCGGCGAGGTGGCGTCGGCGGAGGACGCCACCGTGAGGGAGCGCGACTACATCGAGCCCATCAAGTCGCCGCTGCTGTCGCACGTGTGCACGGCGCCGGTGCAGTACAACGGCGCGCGGATCGACGACTGCGCGGCGATCGTGACGAGGGCGTGGCTGGAGGTGCAGGAGACGTGCCTCAAGAAGGTGCTCTTCCTGCGGCTGGGCTTCTCCGGCGTGGCATCCACCAAGATCCGGCGGTCGGAGTGGGATGGCCCGTTCGTCGTGTCACGCAAGTCGGGCTCGCTGTCGGCATTGTTCAGCGCGCGGCTGTCCGCCGCCGGTGCCGGTGGCTCCGCGCAGATGATGCAGCAGCAGCATCCGGTGGGGGAGAAAAGTGGAGGTGAA ] [+] EMBL CB685520 [ ACTCTCATGGGTCCTAAGCTTCATGTCACCACTGCCAAGGCTGATTCTGGGAATCGTCCGGTGACCGGCATTCGGCTGTTCCTGGAAGGCAAGAAGAACAACCGGCTGGGCGTTCACCTACAGCATTTGTCAGCGACGCCGGGCACGATCACGATCGCCGGCGAGGTGGCGTCGGCGGAGGACGCCACCGTGAGGGAGCGCGACTACATCGAGCCCATCAAGTCGCCGCTGCTGTCGCACGTGTGCACGGCGCCGGTGCAGTACAACGGCGCGCGGATCGACGACTGCGCGGCGATCGTGACGAGGGCGTGGCTGGAGGTGCAGGAGACGTGCCTCAAGAAGGTGCTCTTCCTGCGGCTGGGCTTCTCCGGCGTGGCATCCACCAAGATCCGGCGGTCGGAGTGGGATGGCCCGTTCGTCGTGTCACGCAAGTCGGGCTCGCTGTCGGCATTGTTCAGCGCGCGGCTGTCCGCCGCCGGTGCCGGTGGCTCCGCGCAGATGATGCAGCAGCAGCAGCCGGTGGGGGAG AAGGTGGAGGTGAACTCCGCCATCTTCCCCAAGGGCCCGCCGGTGCCT ] consensusID : consensus_13574#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1127 fasta sequence [TCCATGTTGTTTGTAGTAGAACTAGCTCACAGTGTGTTCCGTTTTGTTTCGTGCAGGCTGATTCTGGGAATCGTCCGGTGACCGGCATTCGGCTGTTCCTGGAAGGCAAGAAGAACAACCGGCTGGGCGTTCACCTACAGCATTTGTCAGCGACGCCGGGCACGATCACGATCGCCNGGCGAGGTGGCGTCGGCGGAGGACGCCACCGTGAGGGAGCGCGACTACATCGAGCCCATCAAGTCGCCGCTGCTGTCGCACGTGTGCACGGCGCCGGTGCAGTACAACGGCGCGCGGATCGACGACTGCGCGGCGATCGTGACGAGGGCGTGGCTGGAGGTGCAGGAGACGTGCCTCAAGAAGGTGCTCTTCCTGCGGCTGGGCTTCTCCGGCGTGGCATCCACCAAGATCCGGCGGTCGGAGTGGGATGGCCCGTTCGTCGTGTCACGCAAGTCGGGCTCGCTGTCGGCATTGTTCAGCGCGCGGCTGTCCGCCGCCGGTGCCGGTGGCTCCGCGCAGATGATGCAGCAGCAGCAGCCGGTGGGGGAGAAGGTGGAGGTGAACTCCGCCATCTTCCCCAAGGGCCCGCCGGTGCCTCTCCCGGTGCAGAGGATGGCGAGGTACGTCGACACAACGGAGGTGATGAGGGGCCCCGCCGACTTGCCGGGGTACTGGGTGGTCACCGGCGCGAAGCTCTGCATCGAAGGCGGCAAAGTTGCACTCAAGGTCAAGTACTCGCTGCTCATCGCGGAGGTGCTAGACTACCCTGAGTGACTGTTGAGAAGAACTGCACGGTGTGTGCATCTTTTTGGCTCGTTTGTGATGCTGTTGTGTACAGTACAGTACAGTACAGGTAAGGTCGGCTCAGCTCAGCGTATACTTGTACAGATTGGGCACACGCTAGTAGTCAGGTATACTATTTGTATGTATAAACCACAGAGTAGAGCAGTACACTACCAGCAGGCAATTGTTTTGGTTTGCACTTGGATTCTAGCAAAACTAGGAGCATACACAGTTGTTGAAATTGGTTTCCTTAGGCATGCAGCTCAAAAGGTTATGTACGATTATTTCTCACCTCGGGTATTGCCCTGAGATGGGATCATTTTTACTGGCAAAAAAAAAAAAAAAAA] [+] EMBL CF335506 [TCCATGTTGTTTGTAGTAGAACTAGCTCACAGTGTGTTCCGTTTTGTTTCGTGCAGGCTGATTCTGGGAATCGTCCGGTGACCGGCATTCGGCTGTTCCTGGAAGGCAAGAAGAACAACCGGCTGGGCGTTCACCTACAGCATTTGTCAGCGACGCCGGGCACGATCACGATCGCCNGGCGAGGTGGCGTCGGCGGAGGACGCCACCGTGAGGGAGCGCGACTACATCGAGCCCATCAAGTCGCCGCTGCTGTCGCACGTGTGCACGGCGCCGGTGCAGTACAACGGCGCGCGGATCGACGACTGCGCGGCGATCGTGACGAGGGCGTGGCTGGAGGTGCAGGAGACGTGCCTCAAGAAGGTGCTCTTCCTGCGGCTGGGCTTCTCCGGCGTGGCATCCACCAAGATCCGGCGGTCGGAGTGGGATGGCCCGTTCGTCGTGTCACGCAAGTCGGGCTCGCTGTCGGCATTGTTCAGCGCGCGGCTGTCCGCCGCCGGTGCCGGTGGCTCCGCGCAGATG ] [-] EMBL CB685521 [ GTCGGAGTGGGATGGCCCGTTCGTCGTGTCACGCAAGTCGGGCTCGCTGTCGGCATTGTTCAGCGCGCGGCTGTCCGCCGCCGGTGCCGGTGGCTCCGCGCAGATGATGCAGCAGCAGCAGCCGGTGGGGGAGAAGGTGGAGGTGAACTCCGCCATCTTCCCCAAGGGCCCGCCGGTGCCTCTCCCGGTGCAGAGGATGGCGAGGTACGTCGACACAACGGAGGTGATGAGGGGCCCCGCCGACTTGCCGGGGTACTGGGTGGTCACCGGCGCGAAGCTCTGCATCGAAGGCGGCAAAGTTGCACTCAAGGTCAAGTACTCGCTGCTCATCGCGGAGGTGCTAGACTACCCTGAGTGACTGTTGAGAAGAACTGCACGGTGTGTGCATCTTTTTGGCTCGTTTGTGATGCTGTTGTGTACAGTACAGTACAGTACAGGTAAGGTCGGCTCAGCTCAGCGTATACTTGTACAGATTGGGCACACGCTAGTAGTCAGGTATACTATTTGTATGTATAAACCACAGAGTAGAGCAGTACACTACCAGCAGGCAATTGTTTTGGTTTGCACTTGGATTCTAGCAAAACTAGGAGCATACACAGTTGTTGAAATTGGTTTCCTTAGGCATGCAGCTCAAAAGGTTATGTACGATTATTTCTCACCTCGGGTATTGCCCTGAGATGGGATCATTTTTACTGG ] [-] EMBL CF335507 [ GTTGCACTCAAGGTCAAGTACTCGCTGCTCATCGCGGAGGTGCTAGACTACCCTGAGTGACTGTTGAGAAGAACTGCACGGTGTGTGCATCTTTTTGGCTCGTTTGTGATGCTGTTGTGTACAGTACAGTACAGTACAGGTAAGGTCGGCTCAGCTCAGCGTATACTTGTACAGATTGGGCACACGCTAGTAGTCAGGTATACTATTTGTATGTATAAACCACAGAGTAGAGCAGTACACTACCAGCAGGCAATTGTTTTGGTTTGCACTTGGATTCTAGCAAAACTAGGAGCATACACAGTTGTTGAAATTGGTTTCCTTAGGCATGCAGCTCAAAAGGTTATGTACGATTATTTCTCACCTCTGGTATTGCCCTGAGATGGGATCATTTTTACTGGCAAAAAAAAAAAAAAAAA] consensusID : consensus_13574#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 755 fasta sequence [ACCAAGATCCGGCGGTCGGAGTGGGATGGCCCGTTCGTCGAGTCACGCAAGTCGGGCTCGCTGTCGGCATTGTTCAGTGCGCGGCTGTCCGCCGCCGGTGCCGGTGGCTCCGCGCAGATGATGCAGCAGCAGCAGCCGGTGGGGGAGAAGGTGGAGGTGAACTCCGCCATTTTCCCCAAGGGCCCGCCGGTGCCTCTCCCGGTGCAGAGGATGGCGAGGTACGTCGACACAACGGAGGTGATGAGGGGCCCCGCCGACTTGCCGGGGTACTGGGTGGTCACCGGCGCGAAGCTCTGCATCGAAGGCGGCAAAGTTGCACTCAAGGTCAAGTACTCGCTGCTCATCGCGGAGGTGCTAGACTACCCTGAGTGACTGTTGAGAAGAACTGCACGGTGTGTGCATCTTTTTGGCTCGTTTGTGATGCTGTTGTGTACAGTACAGTACAGTACAGGTAAGGTCGGCTCAGCTCAGCGTATACTTGTACAGATTGGGCACACGCTAGTAGTCAGGTATACTATTTGTATGTATAAACCA-CAGAGTAGAGCAGTACACTACCAGCAGGCAATTGTTTTGGTTTGCACTTGGATTCTAGCAAAACTAGGAGCATACACAGTTGTTGAAATTGGTTTCCTTAGGCATGCAGCTCAAAAGGTTATGTACGATTATTTCTCACCTCTGGTATTGCCCTGAGATGGGATCATTTTTACTGGCAATGTTGAGAATGTGAG-ACGGTTTGGTAATATGGCATCAGCAAT] [-] EMBL CB661346 [ACCAAGATCCGGCGGTCGGAGTGGGATGGCCCGTTCGTCGAGTCACGCAAGTCGGGCTCGCTGTCGGCATTGTTCAGTGCGCGGCTGTCCGCCGCCGGTGCCGGTGGCTCCGCGCAGATGATGCAGCAGCAGCAGCCGGTGGGGGAGAAGGTGGAGGTGAACTCCGCCATTTTCCCCAAGGGCCCGCCGGTGCCTCTCCCGGTGCAGAGGATGGCGAGGTACGTCGACACAACGGAGGTGATGAGGGGCCCCGCCGACTTGCCGGGGTATTGGGTGGTCACCGGCGTGAAGCTCTGCATCGAAGGCGGCAAAGTTGCACTCAAGGTCAAGTACTCGCTGCTCATCGCGGAGGTGCTAGACTACCCTGAGTGACTGTTGAGAAGAACTGCACGGTGTGTGCATCTTTTTGGCTCGTTTGTGATGCTGTTGTGTTCAGTACAGTACAGTACAGGTAAGGTCGGCTCAGCTCAGCGTATACTTGTACAGATTGGGCACACGCTAGTAGTCAGGTATACTATTTGTATGTATAAACCA CAGAGTAGAGCAGTACCCTACCAGCAGGCAATTGTTTTGGTTTGCACTTGGATTCTAGCAAAACTAGGAGCATACACAGTTGTTGAAATTGGTTTCCTTAGGCATGCAGCTCAAAAGGTTATGTACGATTATTTCTCACCTCTGGTATTGCCCTGAGATGGGATCATTTTTTCTGGCAATGTTGAGAATGTGAG t ] [-] EMBL CB655256 [ CCGTTCGTCGTGTCACGCAAGTGGGGCTCGCTGTCGGCATTGTTCAGCGCGCGGCTGTCCGCCGCCGGTGCCGGTGGCTCCGCGCAGATGATGCAGCAGCAGCAGCCGGTGGGGGAGAAGGTGGAGGTGAACTCCGCCATCTTCCCCAAGGGCCCGCCGGTGCCTCTCCCGGTGCAGAGGATGGCGAGGTACGTCGACACAACGGAGGTGATGAGGGGCCCCGCCGACTTGCCGGGGTACTGGGTGGTCACCGGCGCGAAGCTCTGCATCGAAGGCGGCAAAGTTGCACTCAAGGTCAAGTACTCGCTGCTCATCGCGGAGGTGCTAGACTACCCTGAGTGACTGTTGAGAAGAACTGCACGGTGTGTGCATCTTTTTGGCTCGTTTGTGATGCTGTTGTGTACAGTACAGTACAGTACAGGTAAGGTCGGCTCAGCTCAGCGTATACTTGTACAGATTGGGCACACGCTAGTAGTCAGGTATACTATTTGTATGTATAAACCA CAGAGTAGAGCAGTACACTACCAGCAGGCAATTGTTTTGGTTTGCACTTGGATTCTAGCAAAACTAGGAGCATACACAGTTGTTGAAATTGGTTTCCTTAGGCATGCAGCTCAAAAGGTTATGTACGATTATTTCTCACCTCTGGTATTGCCCTGAGATGGGATCATTTTTACTGGCAATGTTGAGAATGTTAG AAGGGTTc ] [-] EMBL CB637611 [ CCGGTGCCTCTCCCGGTGCAGAGGATGGCGAGGTACGTCGACACAACGGAGGTGATGAGGGGCCCCGCCGACTTGCCGGGGTACTGGGTGGTCACCGGCGCGAAGCTCTGCATCGAAGGCGGCAAAGTTGCACTCAAGGTCAAGTACTCGCTGCTCATCGCGGAGGTGCTAGACTACCTTGAGTGACTGTTGAGAAGAACTGCACGGTGTGTGCATCTTTTTGGCTCGTTTGTGATGCTGTTGTGTACAGTACAGTACAGTACAGGTAAGGTCGGCTCAGCTCAGCGTATACTTGTACAGATTGGGCACACGCTAGTAGTCAGGTATACTATTTGTATGTATAAACCA CAGAGTAGAGCAGTACACTACCAGCAGGCAATTGTTTTGGTTTGCACTTGGATTCTAGCAAAACTAGGAGCATACACAGTTGTTGAAATTGGTTTCCTTAGGCATGCAGCTCAAAAGGTTATGTACGATTATTTCTCACCTCTGGTATTGCCCTGAGATGGGATCATTTTTACTGGCAATGTTGAGAATGTGAG ACGGTTTGGTAATATGGCATCAGCAAT] [+] EMBL BM038385 [ CGCCGACTTGCCGGGGTACTGGGTGGTCACCGGC CGAAGCTCTGCATCGAA GCCGCAAAGTTGCACTCAAGGTCAAGTACTCGCTGCTCATCGCGGAGGTGCTAGACTACCCTGAGTGACTGTTGAGAAGAACTGCACGGTGTGTGCATCTTTTTGGCTCGTTTGTGATGCTGTTGTGTACAGTACAGTACAGTACAGGTAAGGTCGGCTCAGCTCAGCGTATACTTGTACAGATTGGGCACACGCTAGTAGTCAGGTATACTATTTGTATGTATAAACCACCAGAGTAGAGCAGTACACTACCAGCAGGCCATTGTTTTGGTTTGCACTTGGATTCTAGC AAACTAGGAGCATACACAGTTGTTGAAATTGGTTTCCTTAGGCAT CAGCTC AAAGGTTATGTACGATTATTTCTCACCTCTGGTATTGCCCTGAGATGGGATCATTTTTACTGCCATNCNTGAGAATGTGAGCACGGTTTGGTAAaaaaa ] consensusID : consensus_13574#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence [TNGNTNGACAGGGNAGNTTNGNATTGGGTCCTGGATCTNCTGCTTGGCGGTCGTTCAGACCATCAGTCGTGTCACACAAAGATGTAAGGCAATCACACATGTACTGACGATGTTCATTGCGTGATTTATCACTCCAACAGCAGGAAATTAATGAGAGAGCCATGATTAATTTGTTTGGTCGCATGTCCTTTCGTTTCACAGGACATCCTCAGTATCCACATCAGAAGAGGGGGCGTTGATAATGGCCAAGGCCACAGTAATTGGCTTTCGACGATCAGCGGTTCACCGGACGTCATCTCTATGGCTTTTGTGCCGATTACTTCTCTGCTCACTGGTGTTCGAGGCTGCGGGTTNCTGAATCATGCAGTGAACCTCTACCTCAGATGTAAGCACTTT] [+] EMBL OSS14574A [TNGNTNGACAGGGNAGNTTNGNATTGGGTCCTGGATCTNCTGCTTGGCGGTCGTTCAGACCATCAGTCGTGTCACACAAAGATGTAAGGCAATCACACATGTACTGACGATGTTCATTGCGTGATTTATCACTCCAACAGCAGGAAATTAATGAGAGAGCCATGATTAATTTGTTTGGTCGCATGTCCTTTCGTTTCACAGGACATCCTCAGTATCCACATCAGAAGAGGGGGCGTTGATAATGGCCAAGGCCACAGTAATTGGCTTTCGACGATCAGCGGTTCACCGGACGTCATCTCTATGGCTTTTGTGCCGATTACTTCTCTGCTCACTGGTGTTCGAGGCTGCGGGTTNCTGAATCATGCAGTGAACCTCTACCTCAGATGTAAGCACTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13574#1 ------------------------------------------------------------ consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 CGGCGCAGGCTGCGGCGGAGGCGGCGGTGGGCGCGATCGGGTGCGGGTACGACCTCACGA 60 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 ------------------------------------------------------------ consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 GCGACCTCCGCCTCAGCCGCGTCAAGGCGGGCGGGAGGCTGGTGGACATCGACGGGGCGA 120 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 ------------------------------------------------------------ consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 GCGGCGCGGCGAGACGGGAGCTGGTCCTCCCCTGGGGAGCCGTCGTGGGGGGCGTGCCGG 180 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 ------------------------------------------------------------ consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 TGGGGATCGTCGCCGACAAGGGGGAGCGCACCCGGTTCCGCTCCGACGTCCTCTCCTTCG 240 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 ------------------------------------------------------------ consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 CTCAGATGGCGGAGCAGGTGAACCAGACGATGTCGGTGGCGGGGAAGATCCCGTCGGGCG 300 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 ------------------------------------------------------------ consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 CGTTCAACGCCATGTTCGACTATCACGGGTGCTGGCACAAGGACGCGGCCGCCACGGGGA 360 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 ------------------------------------------------------------ consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 GCCTCTGCTTCGACGGCCGCTTCATCGAGCTCTACGCCGTCGAGGCCCCCCGCGCGCACC 420 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 ------------------------------------------------------------ consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 TCGCCCTGCTCGACCGCGTCAAGCGCGACGTCCCGCCCTTCTGGGACCCCGCTGCTCTCG 480 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 ------------------------------------------------------------ consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 CCGAATTCATCGACAAGTACGGGACGCACGTCATCGCCGGGGTGAAGATGGGAGGGAAGG 540 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 ------------------------------------------------------------ consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 ATGTGGTCTGCATCAAGCAGCTCAAGGGATCCAATCTCACACAGAGCGATGTGCAGTCTC 600 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 ------------------------------------------------------------ consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 GGCTCAAGAAACTCTCCGACGACAAGCTCGCTCAGGATTCACCTGAAAGTTTAACTGCAA 660 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 ------------------------------------------------------------ consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 GAGACGACAAGTTCTTGCTGGGATTAAACGGGAGTTTATTATTGGGTCCTGGATCTGCTG 720 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 ------------------------------------------------------------ consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 CTTGGCGGTCGTTCAGACCATCAGTCGTGTCACACAAAGATGACATCCTCAGTATCCACA 780 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 ------------------------------------------------------------ consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 TCAGAAGAGGGGGCGTTGATAATGGCCAAGGCCACAGTAATTGGCTTTCGACGATCAGCG 840 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 ------------------------------------------------------------ consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 GTTCACCGGACGTCATCTCTATGGCTTTTGTGCCGATTACTTCTCTGCTCACTGGTGTTC 900 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 ------------------------------------------------------------ consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 GAGGCTGCGGGTTCCTGAATCATGCAGTGAACCTCTACCTCAGATACAAACCTCCAATAG 960 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 ------------------------------------------------------------ consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 AGGAACTCCATCAATTTCTGGAATTCCAGGTGCCACGACAATGGGCTCCAGAGTTTGGGG 1020 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 -----------------------------------------TCCATGTTGTTTGTAGTAG 19 consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 AGCTCCCTCTGGCTTTGGGCCCGAGAAAGAAGAAGAACAGCCTGCCATCTCTTCAGTTTA 1080 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 AACTAGCTCACAGTGTGTTCCGTTTTGTTTC-GTGCAGGCTGATTCTGGGAATCGTCCGG 78 consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 CTCTCATGGGTCCTAAGCTTCATGTCACCACTGCCAAGGCTGATTCTGGGAATCGTCCGG 1140 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 TGACCGGCATTCGGCTGTTCCTGGAAGGCAAGAAGAACAACCGGCTGGGCGTTCACCTAC 138 consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 TGACCGGCATTCGGCTGTTCCTGGAAGGCAAGAAGAACAACCGGCTGGGCGTTCACCTAC 1200 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 AGCATTTGTCAGCGACGCCGGGCACGATCACGATCGCCNGGCGAGGTGGCGTCGGCGGAG 198 consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 AGCATTTGTCAGCGACGCCGGGCACGATCACGATCGCCGG-CGAGGTGGCGTCGGCGGAG 1259 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 GACGCCACCGTGAGGGAGCGCGACTACATCGAGCCCATCAAGTCGCCGCTGCTGTCGCAC 258 consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 GACGCCACCGTGAGGGAGCGCGACTACATCGAGCCCATCAAGTCGCCGCTGCTGTCGCAC 1319 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 GTGTGCACGGCGCCGGTGCAGTACAACGGCGCGCGGATCGACGACTGCGCGGCGATCGTG 318 consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 GTGTGCACGGCGCCGGTGCAGTACAACGGCGCGCGGATCGACGACTGCGCGGCGATCGTG 1379 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 ACGAGGGCGTGGCTGGAGGTGCAGGAGACGTGCCTCAAGAAGGTGCTCTTCCTGCGGCTG 378 consensus_13574#2 ------------------------------------------------------------ consensus_13574#0 ACGAGGGCGTGGCTGGAGGTGCAGGAGACGTGCCTCAAGAAGGTGCTCTTCCTGCGGCTG 1439 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 GGCTTCTCCGGCGTGGCATCCACCAAGATCCGGCGGTCGGAGTGGGATGGCCCGTTCGTC 438 consensus_13574#2 ---------------------ACCAAGATCCGGCGGTCGGAGTGGGATGGCCCGTTCGTC 39 consensus_13574#0 GGCTTCTCCGGCGTGGCATCCACCAAGATCCGGCGGTCGGAGTGGGATGGCCCGTTCGTC 1499 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 GTGTCACGCAAGTCGGGCTCGCTGTCGGCATTGTTCAGCGCGCGGCTGTCCGCCGCCGGT 498 consensus_13574#2 GAGTCACGCAAGTCGGGCTCGCTGTCGGCATTGTTCAGTGCGCGGCTGTCCGCCGCCGGT 99 consensus_13574#0 GTGTCACGCAAGTCGGGCTCGCTGTCGGCATTGTTCAGCGCGCGGCTGTCCGCCGCCGGT 1559 consensus_13574#3 ------------------------------TNGNTNGACAGG-GNAGNTTNGNATTGGGT 29 * * * * * * * *** consensus_13574#1 GCCGGTGGCTCCGCGCAG--ATGATGCAGCAGCAGCAGCCGGTGGGGGAGAAGGTGGAGG 556 consensus_13574#2 GCCGGTGGCTCCGCGCAG--ATGATGCAGCAGCAGCAGCCGGTGGGGGAGAAGGTGGAGG 157 consensus_13574#0 GCCGGTGGCTCCGCGCAG--ATGATGCAGCAGCAGCAGCCGGTGGGGGAGAAGGTGGAGG 1617 consensus_13574#3 CCTGGATCTNCTGCTTGGCGGTCGTTCAG-ACCATCAGTCGTGTCACACAAAGATGTAAG 88 * ** * ** * * * *** * ** *** ** *** ** * * consensus_13574#1 TGAACTCCGCCATCTTCCCCAAGGGCCCGCCGGTGCCTCTCCCGGTGCAGAGGATGGCGA 616 consensus_13574#2 TGAACTCCGCCATTTTCCCCAAGGGCCCGCCGGTGCCTCTCCCGGTGCAGAGGATGGCGA 217 consensus_13574#0 TGAACTCCGCCATCTTCCCCAAGGGCCCGCCGGTGCCTCTCCCGGTGCAGAGGATGGCGA 1677 consensus_13574#3 GCAATCACAC-ATGTACTGACGATGTTCATTGCGTGATTTATCACTCCAACAGCAGGAAA 147 ** * * ** * * * * * * * * * ** * ** * consensus_13574#1 GGTACGTCGACACAACGGAGGTGATGAGGGGCCCCGCCGACTTGCCGGGGTACTGGGTGG 676 consensus_13574#2 GGTACGTCGACACAACGGAGGTGATGAGGGGCCCCGCCGACTTGCCGGGGTACTGGGTGG 277 consensus_13574#0 GGTACGTCGACACAACGGAGGTGATGAGGGGCCCCGCCGACTTGCCGGGGTACTGGGTGG 1737 consensus_13574#3 TTAATGAGAGAGCCATGATTAATTTGTTTGGTCGCAT-GTCCTTTCGTTTCACAGGACA- 205 * * * * * ** ** * * * * * ** ** ** consensus_13574#1 TCACCGGCGCGAAGCTCTGCATCGAAGGCGGCAAAGTTGCACTCAAGGTCA-AGTACTCG 735 consensus_13574#2 TCACCGGCGCGAAGCTCTGCATCGAAGGCGGCAAAGTTGCACTCAAGGTCA-AGTACTCG 336 consensus_13574#0 TCACCGGCGCGAAGCTCTGCATCGAAGGCGGCAAAGTTGCACTCAAGGTCA-AGTACTCG 1796 consensus_13574#3 TCCTCAGTATCCACATCAGAAGAGGGGGCGTTGA--TAATGGCCAAGGCCACAGTAATTG 263 ** * * * ** * * * **** * * ***** ** **** * * consensus_13574#1 CTGCTCATCGCGGAGGTGCTAGACTACCCTGAGTGACTGTTGAGAAGAACTGCACGGTGT 795 consensus_13574#2 CTGCTCATCGCGGAGGTGCTAGACTACCCTGAGTGACTGTTGAGAAGAACTGCACGGTGT 396 consensus_13574#0 CTGCTCATCGCGGAGGTGCTAGACTACCCTGAGTGACTGTTGAGAAGAACTGCACGGTGT 1856 consensus_13574#3 GCTTTCGACGATCAG----CGGTTCACCGGACGTCATCTCT---ATGGCTTTTGTGCCGA 316 ** ** ** * *** ** * * * * * * * consensus_13574#1 GTGCATCTTT-TTGGCTCGTTTGTGATGCTGTTGTGTACAGTACAGTACAGTACAGG-TA 853 consensus_13574#2 GTGCATCTTT-TTGGCTCGTTTGTGATGCTGTTGTGTACAGTACAGTACAGTACAGG-TA 454 consensus_13574#0 GTGCATCTTT-TTGGCTCGTTTGTGATGCTGTTGTGTACAGTACAGTACAGTACAGGATG 1915 consensus_13574#3 TTACTTCTCTGCTCACTGGTGTTCGAGGCTGCGGGTTNCTGAATCATGCAGTGAACCTCT 376 * * *** * * ** ** * ** **** * * * * * * **** * consensus_13574#1 AGGTCGGCTCAGCTCAGCGT----------ATACTTGTAC-------------------- 883 consensus_13574#2 AGGTCGGCTCAGCTCAGCGT----------ATACTTGTAC-------------------- 484 consensus_13574#0 TAACTGGTTCAATGGAAGGAGAGAGAGAAGACACCGGCATGGTTGAGGGTCGAAGAGGAG 1975 consensus_13574#3 ACCTCAGATGTAAGCACTTT---------------------------------------- 396 * * * consensus_13574#1 ---AGATTGGGCACACG----CTAGTAGTCAG-GTAT-ACTATTTGTATGTATAAACCAC 934 consensus_13574#2 ---AGATTGGGCACACG----CTAGTAGTCAG-GTAT-ACTATTTGTATGTATAAACCAC 535 consensus_13574#0 ACGAGATCGTCCAATCGATGGCTAGTTGCAAGCGCATGATTAGTTATTTATGTAGTTCAC 2035 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 AGAGTAGAGCAGTACACTACCAGCAGGCAATTGTTT-----TGGTTTGCACTTGGATTC- 988 consensus_13574#2 AGAGTAGAGCAGTACACTACCAGCAGGCAATTGTTT-----TGGTTTGCACTTGGATTC- 589 consensus_13574#0 AAATTTGTTGAATAAGGGGTTGAATCGAGATCTCCTATATGTTTTTTGTTCTAGGGTTTG 2095 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 --TAGCAAAACTAGGAGCATACACAGTTGTTGAAA--TTGGTTTCCTTAGGCATGCAGC- 1043 consensus_13574#2 --TAGCAAAACTAGGAGCATACACAGTTGTTGAAA--TTGGTTTCCTTAGGCATGCAGC- 644 consensus_13574#0 AATGGTGCACCCACAAGGAGACACGGTCGTGGAATATTTCATCTTTCTAGGAATAAATCG 2155 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 -TCAAAAGGTTATGTACGATTATTTCTCACCTCGGGTATTGCCCTGAGATGGGATCATTT 1102 consensus_13574#2 -TCAAAAGGTTATGTACGATTATTTCTCACCTCTGGTATTGCCCTGAGATGGGATCATTT 703 consensus_13574#0 ATAAAATGTGTAACTTAAATCGATGCAAATCTTCGGTGATATTTTAACC---AATCATGT 2212 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 TTACTGGCAAAAAAAAAAAAAAAAA----------------------------------- 1127 consensus_13574#2 TTACTGGCAATGTTGAGAATGTGAGACGGTTTGGTAATATGGCATCAGCAAT-------- 755 consensus_13574#0 TTGTGAAACACAATATAAATCTCTTCTTGTAAAACAAAATATATATCTCAAAAGAAATAA 2272 consensus_13574#3 ------------------------------------------------------------ consensus_13574#1 ------- consensus_13574#2 ------- consensus_13574#0 AGGGAGG 2279 consensus_13574#3 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||