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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13578#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1077 fasta sequence
[GAGACGTGGACATGAATCAAATCAAATCAAATCCCCAAATCAAAGTTAACCAAAATTCCGTGGCAGAGGTCTCCCTCCCCTCCTCTTCTTGGAGTCGTCTCCTCGCGCAAGCCGCATCCCCTCCCCACAACTGGACCAGGATTTACATGGCTTCAAACGCTGGCAAGAAGCTCATTCAGATCGATGTGAGCTCTGATACGGTGTGCCCATGGTGCTTTGTCGGGAAAAAGAACCTCGAGAAAGCTATGGAGCAAAACAAGGACAAGTTTGATTTCGAGGTCCGCTGGCATCCATTCTTTTTAAATCCGAATGCACCTAAGGAAGGCATCAAGAAATCTGATTAC-TACCGGATGAAGTTTGGCCCTATTCA-GTTTGAGCATGCAACTGC-TCGTATGACAGAGATATTTAGAGGAC-TTGGGATGGA-ATATGACATGTCTGGGTTGACTGGAAATACAATGGACAGCCATAGGCTCATAACTCTTGCTGGGCACCAAGGTTATGACAAACAAAGTGCTCTTGTTGAAGAATTATTCCAAAGTTACTTTTGCCATGGAAAGTTTATTGGTGATCGGCAAGTTCTGCTGGATGCTGCAAGAAAGGTGGGCATAGAAGGAGCAGAAGAACTTCTTCAAGATTCTAACAAAGGAGTCGATGAGGTCAAGGAAGAACTCAACAAATATTCCTCTGGAATTTCTGGTGTTCCTCACTTTGTGATAAATGGGAAATTTCAGCTCAGCGGCGGCCAGCCTCCAA-ATGCATTCACAAGGGCTTTTGATGTTGCTGCAAAAG---ATGGGGCTCAATGATTGTGCGTGTGGGAAACACTTATAGGTTACTTAAAGCATGTGCAAAATAGAATAAAAGCTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGTTGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTACATTTTTAACAGCTGTATATAGCCATGAAAAATTGAGAACGCTGTGAAGAAAATACATGTCCTAAGTGTATGCAAAAAACGGCTTTTTTTTTTTGGCTCCTGTGAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C26259 [GAGACGTGGACATGAATCAAATCAAATCAAATCCCCAAATCAAAGTTAACCAAAATTCCGTGGCAGAGGTCTCCCTCCCCTCCTCTTCTTGGAGTCGTCTCCTCGCGCAAG CGCATCCCCTCCCCACAACTGGACCAGGATTTACATGGCTTCAAACGCTGGCAAGAAGCTCATTCAGATCGATGTGAGCTCTGATACGGTGTGCCCATGGTGCTTTGTCGGGAAAAAGAACCTCGAGAAAGCTATGGAGCAAAACAAGGACAAGTTTGATTTCGAGGTCCGCTGGCATCCATTCTTTTTAAATCCGAATGCACCTAAGGAAGGCATCAAGAAATCTGATTACTTACCGGATGAAGTTTGGCCCTATTCANGTTTGAGCATGCAACTGCTTCGTATGACAGGGATATTTGGGGGACTTTGGGATGGATAT TGACATGTCT ]
[+] EMBL CF335362 [ GTGGACATGAATCAAATCAAATCAAATCCCCAAATCAAAGTTAACCAAAATTCCGTGGCAGAGGTCTCCCTCCCCTCCTCTTCTTGGAGTCGTCTCCTCGCGCAAGCCGCATCCCCTCCCCACAACTGGACCAGGATTTACATGGCTTCAAACGCTGGCAAGAAGCTCATTCAGATCGATGTGAGCTCTGATACGGTGTGCCCATGGTGCTTTGTCGGGAAAAAGAACCTCGAGAAAGCTATGGAGCAAAACAAGGACAAGTTTGATTTCGAGGTCCGCTGGCATCCATTCTTTTTAAATCCGAATGCACCTAAGGAAGGCATCAAGAAATCTGATTAC TACCGGATGAAGTTTGGCCCTATTCA GTTTGAGCATGCAACTGC TCGTATGACAGAGATATTTAGAGGAC TTGGGATGGA ATATGACATGTCTGGGTTGACTGGAAATACAATGGACAGCCATAGGCTCATAACTCTTGCTGGGCACCAAGGTTATGACAAAACAAGTGCTCTTGTTGAAGAATTATTCCA ]
[+] EMBL CF296637 [ CCAAAATTCCGTGGCAGAGGTCTCCCTCCCCTCCTCTTCTTGGAGTCGTCTCCTCGCGCAAGCCGCATCCCCTCCCCACAACTGGACCAGGATTTACATGGCTTCAAACGCTGGCAAGAAGCTCATTCAGATCGATGTGAGCTCTGATACGGTGTGCCCATGGTGCTTTGTCGGGAAAAAGAACCTCGAGAAAGCTATGGAGCAAAACAAGGACAAGTTTGATTTCGAGGTCCGCTGGCATCCATTCTTTTTAAATCCGAATGCACCTAAGGAAGGCATCAAGAAATCTGATTAC TACCGGATGAAGTTTGGCCCTATTCA GTTTGAGCATGCAACTGC TCGTATGACAGAGATATTTAGAGGAC TTGGGATGGA ATATGACATGTCTGGGTTGACTGGAAATACAATGGACAGCCATAGGCTCATAACTCTTGCTGGGCACCAAGGTTATGACAAACAAAGTGCTCTTGTTGAAGAATTATTCCAAAGTTACTTTTG ]
[+] EMBL CB678738 [ CCCTCCCCTCCTCTTCTTGGAGTCGTCTCCTCGCGCAAGCCGCATCCCCTCCCCACAACTGGACCAGGATTTACATGGCTTCAAACGCTGGCAAGAAGCTCATTCAGATCGATGTGAGCTCTGATACGGTGTGCCCATGGTGCTTTGTCGGGAAAAAGAACCTCGAGAAAGCTATGGAGCAAAACAAGGACAAGTTTGATTTCGAGGTCCGCTGGCATCCATTCTTTTTAAATCCGAATGCACCTAAGGAAGGCATCAAGAAATCTGATTAC TACCGGATGAAGTTTGGCCCTATTCA GTTTGAGCATGCAACTGC TCGTATGACAGAGATATTTAGAGGAC TTGGGATGGA ATATGACATGTCTGGGTTGACTGGAAATACAATGGACAGCCATAGGCTCATAACTCTTGCTGGGCACCAAGGTTATGACAAACAAAGTGCTCTTGTTGAAGAATTATTCCAAAGTTACTTTTGCCATGGAAAGTTTATTGGTGATCGGCAAGTTCTGCTGGATGCTGCAAGAAAGGTGGGCATAGAAGGAGCAGAAGAACTTCTTCAAGATTCTAACAAAGGAGTCGATGAGGTCAAGGAAGAACTCAACAAATATTCCTCTGGAATTTCTGGTGTTCCTCACTTTGTGATAAATGGGAAATTTCAGCTCAGCGGCGGCCAGCCTCCAA ATGCATTCACAAGGGCTTTTGATGTTGCTGCAAAAG ATGGGGCTCAATGATTGTGCGTGTGGGAAACACTTATAGGTTACTTAAAGCATGTGCAAAATAGAAATAAAGCTGGTTTGCAGGAAAGAATAAGA ]
[+] EMBL AU096720 [ TCTTCTTGGAGTCGTCTCCTCGCGCAA NCGCATCCCCTCCCCACAACTGGACCAGGATTTACATGGCTTCAAACGCTGGCAAGAAGCTCATTCAGATCGATGTGAGCTCTGATACGGTGTGCCCATGGTGCTTTGTCGGGAAAAAGAACCTCGAGAAAGCTATGGAGCAAAACAAGGACAAGTTTGATTTCGAGGTCCGCTGGCATCCATTCTTTTTAAATCCGAATGCACCTAAGGAAGGCATCAAGAAATCTGATTAC TACCGGATGAAGTTTGGCCCTATTCA GTTTGAGCATGCAACTGC TCGTATGACAGAGATATTTAGAGGAC TTGGGATGGA ATATGACATGTCTGGGTTGACTGGAAATACAATGGACAGCCAT ]
[+] EMBL AU096721 [ TGCTCTTGTTGAAGAATTATTCCAAAGTTACTTTTGCCATGGAAAGTTTATTGGTGATCGGCAAGTTCTGCTGGATGCTGCAAGAAAGGTGGGCATAGAAGGAGCAGAAGAACTTCTTCAAGATTCTAACAAAGGAGTCGATGAGGTCAAGGAAGAACTCAACAAATATTCCTCTGGAATTTCTGGTGTTCCTCACTTTGTGATAAATGGGAAATTTCAGCTCAGCGGCGGCCAGCCTCCAA ATGCATTCACAAGGGCTTTTGATGTTGCTGCAAAAG ATGGGGCTCAATGATTGTGCGTGTGGGAAACACTTATAGGTTACTTAAAGCATGTGCAAAATAGAATAAAAGCTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGTTGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTACATTTTTAACAGCTGTATATAGCCATGAAAAATTGAGAACGCTGTGAAGAAAATACATGTCCTAAGTGTATGCACGCACCGGCTTTTTTTTTTTGGCTCCTGTGAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF335361 [ TATTCCAAAGTTACTTTTGCCATGGAAAGTTTATTGGTGATCGGCAAGTTCTGCTGGATGCTGCAAGAAAGGTGGGCATAGAAGGAGCAGAAGAACTTCTTCAAGATTCTAACAAAGGAGTCGATGAGGTCAAGGAAGAACTCAACAAATATTCCTCTGGAATTTCTGGTGTTCCTCACTTTGTGATAAATGGGAAATTTCAGCTCAGCGGCGGCCAGCCTCCAA ATGCATTCACAAGGGCTTTTGATGTTGCTGCAAAAG ATGGGGCTCAATGATTGTGCGTGTGGGAAACACTTATAGGTTACTTAAAGCATGTGCAAAATAGAATAAAAGCTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGTTGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTACATTTTTAACAGCTGTATATAGCCATGAAAAATTGAGAACGCTGTGAAGAAAATACATGTCCTAAGTGTATGCAAAAAA ]
[-] EMBL CF296638 [ TCGATGAGGTCAAGGAAGAACTCAACAAATATTCCTCTGGAATTTCTGGTGTTCCTCACTTTGTGATAAATGGGAAATTTCAGCTCAGCGGCGGCCAGCCTCCAANATGCATTCACAAGGGCTTTTGATGTTGCTGCAAAAGAANATGGGGCTCAATGATTGTGCGTGTGGGAAACACTTATAGGTTACTTAAAGCATGTGCAAAATAGAATAAAAGCTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGTTGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTACATTTTTAACAGCTGTATATAGCCATGAAAAATTGAGAACGCTGTGAAGAAAATACATGTCCTAAGTGTATGCAAAAAA ]
consensusID : consensus_13578#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence
[GGCCCTATTCAGTTTGAGCATGCAACTGCTCGTATGACAGAGATATTTAGAGGTCTTGGGATGGAATATGACATGTCTGGGTTGACTGGAAATACAATGGACAGCCATAGGGTCATAACTCTTGCTGGGCACCAAGGTTATGACAAACAAAGTGCTCTTGTTGAAGAATTATTCCAAAGTTCCTTTTGCCATGGAAAGTTTATTGGTGATCGGCAAGTTCTGCTGGATGCCGCAAGAAAGGTGGGCATAGAAGGAGCCGAAGAACTTCTTCTAGATTCTAACAAAGGAGTCGATGAGGTCAAGGAAGAACTCAACAAATATTCCTCTGGAATTTATGGGGTTCCTCACTTTGTGATAAAAGGGAAATTTCAGGTCACCGGCGGCCAGCCTCCAAATGCATTCACAAGGGCTTTTGATGTTGCTGCAAAAGATGGGGCTCCATGATTGTGCGCGTGGGAAACCCTTATAGGTTACTTAAAGCATGTGCAAAATAGAATAAAAGTTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGTTGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTCCATTTTTAACAGCTGTATATAGCCAGGAAAAATTGAGATCGCTGTGAAGAAAAAAACAAACAAAAAGGGA]
[-] EMBL CB678739 [GGCCCTATTCAGTTTGAGCATGCAACTGCTCGTATGACAGAGATATTTAGAGGTCTTGGGATGGAATATGACATGTCTGGGTTGACTGGAAATACAATGGACAGCCATAGGGTCATAACTCTTGCTGGGCACCAAGGTTATGACAAACAAAGTGCTCTTGTTGAAGAATTATTCCAAAGTTCCTTTTGCCATGGAAAGTTTATTGGTGATCGGCAAGTTCTGCTGGATGCCGCAAGAAAGGTGGGCATAGAAGGAGCCGAAGAACTTCTTCTAGATTCTAACAAAGGAGTCGATGAGGTCAAGGAAGAACTCAACAAATATTCCTCTGGAATTTATGGGGTTCCTCACTTTGTGATAAAAGGGAAATTTCAGGTCACCGGCGGCCAGCCTCCAAATGCATTCACAAGGGCTTTTGATGTTGCTGCAAAAGATGGGGCTCCATGATTGTGCGCGTGGGAAACCCTTATAGGTTACTTAAAGCATGTGCAAAATAGAATAAAAGTTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGTTGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTCCATTTTTAACAGCTGTATATAGCCAGGAAAAATTGAGATCGCTGTGAAGAAAAAAACAAACAAAAAGGGA]
consensusID : consensus_13578#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 293 fasta sequence
[CATTNGAATTCGGCACNAGTTTTGATGTTGCTGCAAAAGATGGGGCTCAATGATTGTGCGTGTGGGAAACACTTACAGGTTACTTAAAGCATGTGCAAAATAGAATAAAAGCTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGTTGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTACATTTTTAACAGCTGTATATAGCCATGAAAAATTGAGAACGCTGTGAAGAAAATACATGTCCTAAGTGTATGCAAAAAAAAAAAAAAAAA]
[+] EMBL AI096174 [CATTNGAATTCGGCACNAGTTTTGATGTTGCTGCAAAAGATGGGGCTCAATGATTGTGCGTGTGGGAAACACTTACAGGTTACTTAAAGCATGTGCAAAATANAATAAAAGCTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGTTGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTACATTTTTAACAGCTGTATATAGCCATGAAAAATTGAGAACGCTGTGAAGAAAATACATGTCCTAAGTGTATGCAAAAAAAAAAAAAAAAA]
[-] EMBL AI978286 [ TTGATGTTGCTGCAAAAGATGGGGCTCAATGATTGTGCGTGTGGGAAACACTTACAGGTTACTTAAAGCATGTGCAAAATAGAATAAAAGCTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGTTGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTACATTTTTAACAGCTGTATATAGCCATGAAAAATTGAGAACGCTGTGAAGAAAATACATGTCCTAA ]
[+] EMBL AI978285 [ TGCTGCAAAAGATGGGGCTCAATGATTGTGCGTGTGGGAAACACTTACAGGTTACTTAAAGCATGTGCAAAATAGAATAAAAGCTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGNNGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATNNTATTCTACATTTTTAACAGCTGTATATAGCCATGAAAAATTGAGAACGCTGTGAAGAAAATACATGTCCT ]
[+] EMBL AI978290 [ TGTAATCTGATGATGATAATNTTNNNCATTTTTAACAGCTGTATATAGCCATGAAAAATTGAGAACGCTGTGAAGAAAATACATGTCCTA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13578#0 GAGACGTGGACATGAATCAAATCAAATCAAATCCCCAAATCAAAGTTAACCAAAATTCCG 60
consensus_13578#1 ------------------------------------------------------------
consensus_13578#2 ------------------------------------------------------------
consensus_13578#0 TGGCAGAGGTCTCCCTCCCCTCCTCTTCTTGGAGTCGTCTCCTCGCGCAAGCCGCATCCC 120
consensus_13578#1 ------------------------------------------------------------
consensus_13578#2 ------------------------------------------------------------
consensus_13578#0 CTCCCCACAACTGGACCAGGATTTACATGGCTTCAAACGCTGGCAAGAAGCTCATTCAGA 180
consensus_13578#1 ------------------------------------------------------------
consensus_13578#2 ------------------------------------------------------------
consensus_13578#0 TCGATGTGAGCTCTGATACGGTGTGCCCATGGTGCTTTGTCGGGAAAAAGAACCTCGAGA 240
consensus_13578#1 ------------------------------------------------------------
consensus_13578#2 ------------------------------------------------------------
consensus_13578#0 AAGCTATGGAGCAAAACAAGGACAAGTTTGATTTCGAGGTCCGCTGGCATCCATTCTTTT 300
consensus_13578#1 ------------------------------------------------------------
consensus_13578#2 ------------------------------------------------------------
consensus_13578#0 TAAATCCGAATGCACCTAAGGAAGGCATCAAGAAATCTGATTACTACCGGATGAAGTTTG 360
consensus_13578#1 -----------------------------------------------------------G 1
consensus_13578#2 ------------------------------------------------------------
consensus_13578#0 GCCCTATTCAGTTTGAGCATGCAACTGCTCGTATGACAGAGATATTTAGAGGACTTGGGA 420
consensus_13578#1 GCCCTATTCAGTTTGAGCATGCAACTGCTCGTATGACAGAGATATTTAGAGGTCTTGGGA 61
consensus_13578#2 ------------------------------------------------------------
consensus_13578#0 TGGAATATGACATGTCTGGGTTGACTGGAAATACAATGGACAGCCATAGGCTCATAACTC 480
consensus_13578#1 TGGAATATGACATGTCTGGGTTGACTGGAAATACAATGGACAGCCATAGGGTCATAACTC 121
consensus_13578#2 ------------------------------------------------------------
consensus_13578#0 TTGCTGGGCACCAAGGTTATGACAAACAAAGTGCTCTTGTTGAAGAATTATTCCAAAGTT 540
consensus_13578#1 TTGCTGGGCACCAAGGTTATGACAAACAAAGTGCTCTTGTTGAAGAATTATTCCAAAGTT 181
consensus_13578#2 ------------------------------------------------------------
consensus_13578#0 ACTTTTGCCATGGAAAGTTTATTGGTGATCGGCAAGTTCTGCTGGATGCTGCAAGAAAGG 600
consensus_13578#1 CCTTTTGCCATGGAAAGTTTATTGGTGATCGGCAAGTTCTGCTGGATGCCGCAAGAAAGG 241
consensus_13578#2 ------------------------------------------------------------
consensus_13578#0 TGGGCATAGAAGGAGCAGAAGAACTTCTTCAAGATTCTAACAAAGGAGTCGATGAGGTCA 660
consensus_13578#1 TGGGCATAGAAGGAGCCGAAGAACTTCTTCTAGATTCTAACAAAGGAGTCGATGAGGTCA 301
consensus_13578#2 ------------------------------------------------------------
consensus_13578#0 AGGAAGAACTCAACAAATATTCCTCTGGAATTTCTGGTGTTCCTCACTTTGTGATAAATG 720
consensus_13578#1 AGGAAGAACTCAACAAATATTCCTCTGGAATTTATGGGGTTCCTCACTTTGTGATAAAAG 361
consensus_13578#2 ------------------------------------------------------------
consensus_13578#0 GGAAATTTCAGCTCAGCGGCGGCCAGCCTCCAAATGCATTCACAAGGGCTTTTGATGTTG 780
consensus_13578#1 GGAAATTTCAGGTCACCGGCGGCCAGCCTCCAAATGCATTCACAAGGGCTTTTGATGTTG 421
consensus_13578#2 ------------------------------CATTNGAATTCGGCACNAGTTTTGATGTTG 30
** * **** * ***********
consensus_13578#0 CTGCAAAAGATGGGGCTCAATGATTGTGCGTGTGGGAAACACTTATAGGTTACTTAAAGC 840
consensus_13578#1 CTGCAAAAGATGGGGCTCCATGATTGTGCGCGTGGGAAACCCTTATAGGTTACTTAAAGC 481
consensus_13578#2 CTGCAAAAGATGGGGCTCAATGATTGTGCGTGTGGGAAACACTTACAGGTTACTTAAAGC 90
****************** *********** ********* **** **************
consensus_13578#0 ATGTGCAAAATAGAATAAAAGCTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGT 900
consensus_13578#1 ATGTGCAAAATAGAATAAAAGTTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGT 541
consensus_13578#2 ATGTGCAAAATAGAATAAAAGCTGGTTTGCAGGAAAGAATAAGAGTTGCTGATATATGGT 150
********************* **************************************
consensus_13578#0 TGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTACATTTTT 960
consensus_13578#1 TGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTCCATTTTT 601
consensus_13578#2 TGCTACACGGTAGGTACTTGAATCTATTGTAATCTGATGATGATAATATTCTACATTTTT 210
**************************************************** *******
consensus_13578#0 AACAGCTGTATATAGCCATGAAAAATTGAGAACGCTGTGAAGAAAATACATGTCCTAAGT 1020
consensus_13578#1 AACAGCTGTATATAGCCAGGAAAAATTGAGATCGCTGTGAAGAAAAAAACAAACAAAAAG 661
consensus_13578#2 AACAGCTGTATATAGCCATGAAAAATTGAGAACGCTGTGAAGAAAATACATGTCCTAAGT 270
****************** ************ ************** * * **
consensus_13578#0 GTATGCAAAAAACGGCTTTTTTTTTTTGGCTCCTGTGAAAAAAAAAAAAAAAAAAAA 1077
consensus_13578#1 GGA------------------------------------------------------ 664
consensus_13578#2 GTATGCAAAAAAAAAAAAAAAAA---------------------------------- 293
* *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||