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Oryza sativa
cluster # 13579 cluster # 13579       Sequences # 13       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13579#0 length = 1076 sequences # 4  
consensus_13579#1 length = 982 sequences # 8  
consensus_13579#2 length = 484 sequences # 1  

consensusID : consensus_13579#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1076
fasta sequence
                              [CCGCAGCTGCAGGCCACGCATCCTCGCCGTGAATCTCCCACCGCGCTCCGGCGATGGCATTCGCGGTCTCCACCGCCTGCAGGCCGTCCCTGCTCCTGCCCCCGCGCCAGCGCTCGTCGCCGCCGCGGCCGCGGCCGCTCCTCTGCACGCCCTCCACCGCCGCCTTCCGCCGCGGCGCCCTCAGCGCGACAACAACGCCAACGCCGGCGCGCGCAGCACTGCCGTCGACGACGGGGAGGAACAGGATCGTCTGCGGCAAGGTGACGACGACGAACAATTACCCCTCCTCCTGTCGCAGTCGCAGGAGCACGATGATGCACGCCGCCGCGTGGCTGCTGCTGCAGCAGCTGAGCCCAGCAGCAGCGCGCGTGGCGCGGGCGGCTGATGACGATTCGTCGGTGCAGGTGAGCAAGGGCAGCGCGGCGCCCAACTTCACGCTGAGGGACCAGGACGGGAGGGCGGTGTCGCTGTCCAAGTTCAAGGGGAGGCCGGTGGTGGTGTACTTCTACCCCGCCGACGAGACCCCCGGATGCACCAAGCAGGCCTGCGCCTTCCGCGACTCCTACGAGAAGTTCAAGAAGGCCGGCGCCGAGGTCATCGGCATCAGCGGCGACGACGCCGCCTCCCACAAGGAATTCAAGCAGAAGTACAAGCTGCCGTTCACGCTGCTGAGCGACGAGGGGAACAAGGTGAGGAAGGAGTGGGGTGTGCCGGCTGACCTGTTCGGGACGCTGCCGGGAAGGCAGACGTACGTGCTCGACAAGAACGGCGTCGTCCAGTACATCTACAACAACCAGTTCCAGCCCGAGAAGCACATTGGCGAGACCCTCAAGATCCTCCAGAGCCTCTGATTCTCTTCTTCTTCTTCCTCCTTTTTTAACTACAATCTCTCATGTATGATCCATCACAGTATACCGAGAAATTAATCCATCTGTTAATCTCTTCTCGATNNTTTTTCTCCCTCGGNATGTGTNTAGCTAGTGTATCTGTAACTCTGTGAGTATATATACAGTCCAAATCGGTGGGCTGCTAACTCTGAATTTGCCGTNNGGCGGTNTANNANANTAAAAAGGNNN]

[+] EMBL CA753963             [CCGCAGCTGCAGGCCACGCATCCTCGCCGTGAATCTCCCACCGCGCTCCGGCGATGGCATTCGCGGTCTCCACCGCCTGCAGGCCGTCCCTGCTCCTGCCCCCGCGCCAGCGCTCGTCGCCGCCGCGGCCGCGGCCGCTCCTCTGCACGCCCTCCACCGCCGCCTTCCGCCGCGGCGCCCTCAGCGCGACAACAACGCCAACGCCGGCGCGCGCAGCACTGCCGTCGACGACGGGGAGGAACAGGATCGTCTGCGGCAAGGTGACGACGACGAACAATTACCCCTCCTCCTGTCGCAGTCGCAGGAGCACGATGATGCACGCCGCCGCGTGGCTGCTGCTGCAGCAGCTGAGCCCAGCAGCAGCGCGCGTGGCGCGGGCGGCTGATGACGATTCGTCGGTGCAGGTGAGCAAGGGCAGCGCGGCGCCCAACTTCACGCTGAGGGACCAGGACGGGAGGGCGGTGTCGCTGTCCAAGTTCAAGGGGAGGACGGTGGTGGTGTACTTCTA CCCGCCGACGAGACCCCCGGATGCACCAAGCAGGGCTGCGCCTTCCGCGACTCCTACGAGAAAGTCAAGAAGGCCGGCGCCGAGGTTATCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CB634846             [                                                                                                                                                                                                                                                     ATCGTCTGCGGCAAGGTGACGACGACGAACAATTACCCCTCCTCCTGTCGCAGTCGCAGGAGCACGATGATGCACGCCGCCGCGTGGCTGCTGCTGCAGCAGCTGAGCCCAGCAGCAGCGCGCGTGGCGCGGGCGGCTGATGACGATTCGTCGGTGCAGGTGAGCAAGGGCAGCGCGGCGCCCAACTTCACGCTGAGGGACCAGGACGGGAGGGCGGTGTCGCTGTCCAAGTTCAAGGGGAGGCCGGTGGTGGTGTACTTCTACCCCGCCGACGAGACCCCCGGATGCACCAAGCAGGCCTGCGCCTTCCGCGACTCCTACGAGAAGTTCAAGAAGGCCGGCGCCGAGGTCATCGGCATCAGCGGCGACGACGCCGCCTCCCACAAGGAATTCAAGCAGAAGTACAAGCTGCCGTTCACGCTGCTGAGCGACGAGGGGAACAAGGTGAGGAAGGAGTGGGGTGTGCCGGCTGACCTGTTCGGGACGCTGCCGGGAAGGCAGACGTACGTGCTCGACAAGAACGGCGTCGTCCAGTACATCTACAACAACCAGTTCCAGCCCGAGAAGCACATTGGCGAGACCCTCAAGATCCTCCAGAGCCTCTGATTCTCTTCTTCTTCTTCCTCCTTTTTTAACTACAATCTCTCATGTATGATCCATCACAGTATACCGAGAAATTAATCCATCTG                                                                                                                                              ]
[+] EMBL CB634845             [                                                                                                                                                                                                                                                        GTCTGCGGCAAGGTGACGACGACGAACAATTACCCCTCCTCCTGTCGCAGTCGCAGGAGCACGATGATGCACGCCGCCGCGTGGCTGCTGCTGCAGCAGCTGAGCCCAGCAGCAGCGCGCGTGGCGCGGGCGGCTGATGACGATTCGTCGGTGCAGGTGAGCAAGGGCAGCGCGGCGCCCAACTTCACGCTGAGGGACCAGGACGGGAGGGCGGTGTCGCTGTCCAAGTTCAAGGGGAGGCCGGTGGTGGTGTACTTCTACCCCGCCGACGAGACCCCCGGATGCACCAAGCAGGCCTGCGCCTTCCGCGACTCCTACGAGAAGTTCAAGAAGGCCGGCGCCGAGGTCATCGGCATCAGCGGCGACGACGCCGCCTCCCACAAGGAATTCAAGCAGAAGTACAAGCTGCCGTTCACGCTGCTGAGCGACGAGGGGAACAAGGTGAGGAAGGAGTGGGGTGTGCCGGCTGACCTGTTCGGGACGCTGCCGGGAAGGCAGACGTACGTGCTCGACAAGAACGGCGTCGTCCAGTACATCTACAACAACCAGTTCCAGCCCGAGAAGCACATTGGCGAGACCCTCAAGATCCTCCAGAGCCTCTGATTCTCTTCTTCTTCTTCCTCCTTTTTTAACTACAATCTCTCATGTATGATCCATCACAGTATACCGAGAAATTAATCCATCT                                                                                                                                               ]
[+] EMBL BE228988             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      gagCAAGCTGCCGTTCACGCTGCTGAGCGACNAAGGGAACAACGTGAGGAAAGANTGGGGTGTGCCGGCTGACCTGTTCGGGACNCTGCCGGGAAGGCAGACGTTCGTGCTCGACAAGAACGGCGTCGTCCAGTNCATCTACAACAACCANTTCCAGCCCGAGAAGCACATTGGCGAGACCCTCAAGATCCTCCAGANCCTCTGATTCTCTTCTTCTTCTTCCTCCTTTTTTAACTACAATCTCTCATGTNTGATCCATCNCAGTATACCNAGAAATTAATCCATCTGTTAATCTCTTCTCGATNNTTTTTCTCCCTCGGNATGTGTNTAGCTAGTGTATCTGTAACTCTGTGAGTATATATACAGTCCAAATCGGTGGGCTGCTAACTCTGAATTTGCCGTNNGGCGGTNTANNANANTAAAAAGGNNN]


>consensus_13579#0 CCGCAGCTGCAGGCCACGCATCCTCGCCGTGAATCTCCCACCGCGCTCCGGCGATGGCAT TCGCGGTCTCCACCGCCTGCAGGCCGTCCCTGCTCCTGCCCCCGCGCCAGCGCTCGTCGC CGCCGCGGCCGCGGCCGCTCCTCTGCACGCCCTCCACCGCCGCCTTCCGCCGCGGCGCCC TCAGCGCGACAACAACGCCAACGCCGGCGCGCGCAGCACTGCCGTCGACGACGGGGAGGA ACAGGATCGTCTGCGGCAAGGTGACGACGACGAACAATTACCCCTCCTCCTGTCGCAGTC GCAGGAGCACGATGATGCACGCCGCCGCGTGGCTGCTGCTGCAGCAGCTGAGCCCAGCAG CAGCGCGCGTGGCGCGGGCGGCTGATGACGATTCGTCGGTGCAGGTGAGCAAGGGCAGCG CGGCGCCCAACTTCACGCTGAGGGACCAGGACGGGAGGGCGGTGTCGCTGTCCAAGTTCA AGGGGAGGCCGGTGGTGGTGTACTTCTACCCCGCCGACGAGACCCCCGGATGCACCAAGC AGGCCTGCGCCTTCCGCGACTCCTACGAGAAGTTCAAGAAGGCCGGCGCCGAGGTCATCG GCATCAGCGGCGACGACGCCGCCTCCCACAAGGAATTCAAGCAGAAGTACAAGCTGCCGT TCACGCTGCTGAGCGACGAGGGGAACAAGGTGAGGAAGGAGTGGGGTGTGCCGGCTGACC TGTTCGGGACGCTGCCGGGAAGGCAGACGTACGTGCTCGACAAGAACGGCGTCGTCCAGT ACATCTACAACAACCAGTTCCAGCCCGAGAAGCACATTGGCGAGACCCTCAAGATCCTCC AGAGCCTCTGATTCTCTTCTTCTTCTTCCTCCTTTTTTAACTACAATCTCTCATGTATGA TCCATCACAGTATACCGAGAAATTAATCCATCTGTTAATCTCTTCTCGATNNTTTTTCTC CCTCGGNATGTGTNTAGCTAGTGTATCTGTAACTCTGTGAGTATATATACAGTCCAAATC GGTGGGCTGCTAACTCTGAATTTGCCGTNNGGCGGTNTANNANANTAAAAAGGNNN



consensusID : consensus_13579#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 982
fasta sequence
                              [ACCACCAACCAAACACACACACCCAAACCCGACGAACAGCCGCAGCTGCAGGCCACGCATCCTCGCCGTGAATCTCCCACCGCGCTCCGGCGATGGCATTCGCGGTCTCCACCGCCTGCAGGCCGTCCCTGCTCCTGCCCCCGCGCCAGCGCTCGTCGCCGCCGCGGCCGCGGCCGCTCCTCTGCACGCCCTCCACCGCCGCCTTCCGCCGCGGCGCCCTCAGCGCGACAACAACGCCAACGCCGGCGCGCGCAGCACTGCCGTCGACGACGGGGAGGAACAGGATCGTCTGCGGCAAGGTGAGCAAGGGCAGCGCGGCGCCCAACTTCACGCTGAGGGACCAGGACGGGAGGGCGGTGTCGCTGTCCAAGTTCAAGGGGAGGCCGGTGGTGGTGTACTTCTACCCCGCCGACGAGACCCCCGGATGCACCAAGCAGGCCTGCGCCTTCCGCGACTCCTACGAGAAGTTC-AAGAAGGCCGGCGCCGAGGTCATCGGCATCAGCGGCGACGACGCCGCCTCCCA-CAAGGAGTTCAAGAAGAAGTA-CAAGCTGCCGTTCACGCTG-CTGAGCGA-CGAGGGGAA-CAAGGTGAGGAAGGAGTGGGGTGTGCCGGCTGACCTGTTCGGGACGCTG-CCGGGAAGGCAGA-CGTACGTGCTCGA-CAAGAACGGCGTCGTCCAGTACATCTACAACAA-CCAGTTCCAGCCCGAGAAGCACATTGGCGAGACCCTCAAGATCCTCCAGAGCCTCTGATTCTCTTCTTCTTCTTCCTCCTTTTTTAACT-ACAATCTCTC-ATGTATGATCC-AT-CACAGTATACCGAGAAATTAATCCATCTGTTAATCTCTTCTCGATCGTTTTTCTCCCTCG-GCATGTGTATAGCTAGTGTATCTGTAACTCTGTGAGTATATATACAGTCAAAATCGGTGGGCTGCTAGCTCTGAATTTTGCCGTAAGGCACTCTGATTTTCTCTACTTGGATTAATTTACTA]

[+] EMBL AK068635             [ACCACCAACCAAACACACACACCCAAACCCGACGAACAGCCGCAGCTGCAGGCCACGCATCCTCGCCGTGAATCTCCCACCGCGCTCCGGCGATGGCATTCGCGGTCTCCACCGCCTGCAGGCCGTCCCTGCTCCTGCCCCCGCGCCAGCGCTCGTCGCCGCCGCGGCCGCGGCCGCTCCTCTGCACGCCCTCCACCGCCGCCTTCCGCCGCG  GCCCTCAGCGCGACAACAACGCCAACGCCGGCGCGCGCAGCACTGCCGTCGACGACGGGGAGGAACAGGATCGTCTGCGGCAAGGTGAGCAAGGGCAGCGCGGCGCCCAACTTCACGCTGAGGGACCAGGACGGGAGGGCGGTGTCGCTGTCCAAGTTCAAGGGGAGGCCGGTGGTGGTGTACTTCTACCCCGCCGACGAGACCCCCGGATGCACCAAGCAGGCCTGCGCCTTCCGCGACTCCTACGAGAAGTTC AAGAAGGCCGGCGCCGAGGTCATCGGCATCAGCGGCGACGACGCCGCCTCCCA CAAGGAGTTCAAGAAGAAGTA CAAGCTGCCGTTCACGCTG CTGAGCGA CGAGGGGAA CAAGGTGAGGAAGGAGTGGGGTGTGCCGGCTGACCTGTTCGGGACGCTG CCGGGAAGGCAGA CGTACGTGCTCGA CAAGAACGGCGTCGTCCAGTACATCTACAACAA CCAGTTCAAGCCCGAGAAGCACATTGGCGAGACCCTCAAGATCCTCCAGAGCCTCTGATTCTCTTCTTCTTCTTCCTCCTTTTTTAACT ACAATCTCTC ATGTATGATCC AT CACAGTATACCGAGAAATTAATCCATCTGTTA                                                                                                                                                       ]
[+] EMBL AK059845             [                           CCCGACGAACAGCCGCAGCTGCAGGCCACGCATCCTCGCCGTGAATCTCCCACCGCGCTCCGGCGATGGCATTCGCGGTCTCCACCGCCTGCAGGCCGTCCCTGCTCCTGCCCCCGCGCCAGCGCTCGTCGCCGCCGCGGCCGCGGCCGCTCCTCTGCACGCCCTCCACCGCCGCCTTCCGCCGCGGCGCCCTCAGCGCGACAACAACGCCAACGCCGGCGCGCGCAGCACTGCCGTCGACGACGGGGAGGAACAGGATCGTCTGCGGCAAGGTGAGCAAGGGCAGCGCGGCGCCCAACTTCACGCTGAGGGACCAGGACGGGAGGGCGGTGTCGCTGTCCAAGTTCAAGGGGAGGCCGGTGGTGGTGTACTTCTATCCCGCCGACGAGACCCCCGGATGCACCAAGCAGGCCTGCGCCTTCCGCGACTCCTACGAGAAGTTC AAGAAGGCCGGCGCCGAGGTCATCGGCATCAGCGGCGACGACGCCGCCTCCCA CAAGGAGTTCAAGAAGAAGTA CAAGCTGCCGTTCACGCTG CTGAGCGA CGAGGGGAA CAAGGTGAGGAAGGAGTGGGGTGTGCCGGCTGACCTGTTCGGGACGCTG CCGGGAAGGCAGA CGTACGTGCTCGA CAAGAACGGCGTCGTCCAGTACATCTACAACAA CCAGTTCCAGCCCGAGAAGCACATTGGCGAGACCCTCAAGATCCTCCAGAGCCTCTGATTCTCTTCTTCTTCTTCCTCCTTTTTTAACT ACAATCTCTC ATGTATGATCC AT CACAGTATACCGAGAAATTAATCCATCTGTTAATCTCTTCTCGATCGTTTTTCTCCCTCG GCATGTGTATAGCTAGTGTATCTGTAACTCTGTGAGTATATATACAGTCAAAATCGGTGGGCTGCTAGCTCTGAATTTTGCCGTAAGGCACTCT                            ]
[+] EMBL CB965206             [                                                                                                                                                                                   CTCTGCACGCCCTCCACCGCCGCCTTCCGCCGCGGCGCCCTCAGCGCGACAACAACGCCAACGCCGGCGCGCGCAGCACTGCCGTCGACGACGGGGAGGAACAGGATCGTCTGCGGCAAGGTGAGCAAGGGCAGCGCGGCGCCCAACTTCACGCTGAGGGACCAGGACGGGAGGGCGGTGTCGCTGTCCAAGTTCAAGGGGAGGCCGGTGGTGGTGTACTTCTACCCCGCCGACGAGACCCCCGGATGCACCAAGCAGGCCTGCGCCTTCCGCGACTCCTACGAGAAGTTC AAGAAGGCCGGCGCCGAGGTCATCGGCATCAGCGGCGACGACGCCGCCTCCCA CAAGGAGTTCAAGAAGAAGTA CAAGCTGCCGTTCACGCTG CTGAGCGA CGAGGGGAA CAAGGTGAGGAAGGAGTGGGGTGTGCCGGCTGACCTGTTCGGGACGCTG CCGGGAAGGCAGA CGTACGTGCTCGA CAAGAACGGCGTCGTCCAGTACATCTACAACAA CCAGTTCCAGCCCGAGAAGCACATTGGCGAGACCCTCAAGATCCTCCAGAGCCTCTGATTCTCTTCTTCTTCTTCCTCCTCTTTTAACT ACAATCTCTC ATGTATGATCC AT CACAGTATACCGAGAAATT                                                                                                                                                                    ]
[+] EMBL BU672978             [                                                                                                                                                                                           GCCCT CACCGCCGCCTT CGCCGCGGCGCCCTCAGCGCGACAACAACGCCAACGCCGGCGCGCGCAGCACTGCCGTCGACGACGGGGAGGAACAGGATCGTCTGCGGCAAGGTGAGCAAGGGCAGCGCGGCGCCCAACTTCACGCTGAGGGACCAGGACGGGAGGGCGGTGTCGCTGTCCAAGTTCAAGGGGAGGCCGGTGGTGGTGTACTTCTACCCCGCCGACGAGACCCCCGGATGCACCAAGCAGGCCTGCGCCTTCCGCGACTCCTACGAGAAGTTC AAGAAGGCCGGCGCCGAGGTCATCGGCATCAGCGGCGACGACGCCGCCTCCCA CAAGGAGTTCAAGAAGAAGTA CAAGCTGCCGTTCACGCTG CTGAGCGA CGAGGGGAA CAAGGTGAGGAAGGAGTGGGGTGTGCCGGCTGACCTG TCGG                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB965287             [                                                                                                                                                                                             CCTCCACCGCCGCCTT CGCCGCGGCGCCCTCAGCGCGACAACAACGCCAACGCCGGCGCGCGCAGCACTGCCGTCGACGACGGGGAGGAACAGGATCGTCTGCGGCAAGGTGAGCAAGGGCAGCGCGGCGCCCAACTTCACGCTGAGGGACCAGGACGGGAGGGCGGTGTCGCTGTCCAAGTTCAAGGGGAGGCCGGTGGTGGTGTACTTCTACCCCGCCGACGAGACCCCCGGATGCACCAAGCAGGCCTGCGCCTTCCGCGACTCCTACGAGAAGTTC AAGAAGGCCGGCGCCGAGGTCATCGGCATCAGCGGCGACGACGCCGCCTCCCA CAAGGAGTTCAAGAAGAAGTA CAAGCTGCCGTTCACGCTG CTGAGCGA CGAGGGGAA CAAGGTGAGGAAGGAGTGGGGTGTGCCGGCTGACCTGTTCGGGACGCTG CCGGGAAGGCAGA CGTACGTGCTCGA CAAGAACGGCGTCGTCCAGTACATCTACAACAA CCAGTTCCAGCCCGAGAAGCACATTGGCGAGACCCTCAAGATCCTCCAGAGCCTCTGATTCTCTTCTTCTTCTTCCTCCTCTTTTAACT ACAATCTCTC ATGTATGATCC AT CACAGTATACCGAGAAATT                                                                                                                                                                    ]
[+] EMBL CB966180             [                                                                                                                                                                                                                                 CGAC ACA  GC  ACGCCGGCGCGCGCAGCACTGCCG  GAC  CGGGGAGG ACAGGATCGTCTGCGG  AGGTGAG  AGGGCAGCGCGGCGCCCAACTT  CGCT  GGGACCAGGACGGGAGGGCGGTGTCGCTGTCCAAGTTCAAGGGGAGGCCGGTGGTGGTGTACTTCTACCCCGCCGACGAGACCCCCGGATGCACCAAGCAGGCCTGCGCCTTCCGCGACTCCTACGAGAAGTTC AAGAAGGCCGGCGCCGAGGTCATCGGCATCAGCGGCGACGACGCCGCCTCCCA CAAGGAGTTCAAGAAGAAGTA CAAGCTGCCGTTCACGCTG CTGAGCGA CGAGG                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL BI306369             [                                                                                                                                                                                                                                                                                                                                                                             TCCAAGTTCAAGGGGAGGCCGGTGGTGGTGTACTTCTACCCCGCCGACGAGACCCCCGGATGCACCAAGCAGGCCTGCGCCTTCCGCGACTCCTACGAGAAGTTC AAGAAGGCCGGCGCCGAGGTCATCGGCATCAGCGGCGACGACGCCGCCTCCCA CAAGGAGTTCAAGAAGAAGTA CAAGCTGCCGTTCACGCTG CTGAGCGA CGAGGGGAA CAAGGTGAGGAAGGAGTGGGGTGTGCCGGCTGACCTGTTCGGGACGCTG CCGGGAAGGCAGA CGTACGTGCTCGA CAAGAACGGCGTCGTCCAGTACATCTACAACAA CCAGTTCCAGCCCGAGAAGCACATTGGCGAGACCCTCAAGATCCTCCAGAGCCTCTGATTCTCTTCTTCTTCTTCCTCCTCTTTTAACT ACAATCTCTC ATGTATGATCC AT CACAGTATACCGAGAAATTAATCCATCTGTTAATCTCTTCTCGATCGTTTTTCTCCCTCG GCATGTGTATAGCTAGTGTATCTGTAACTCTGTGAGTATATATACAGTCAAAATCGGTGGGCTGCTAGCTCTGAATTTTGCCGTAAGGCACTCTGATTTTCTCTACTTGGATTAATTTACTA]
[+] EMBL BI803459             [                                                                                                                                                                                                                                                                                                                                                                                                                                           CACCAAGCAGCCTTGC CCTTCCGCGATTCTTACGAGAAGTTCAAAGAAGCCCGGCGCCGAGTTCATCGGCATCAGCGGCGACGACGCCGCTTCCCACCAAGGAATTCAACCAGAAGTACCAAGCTCCCGTTCACGCTGTCTGAGCGACCGAGGGGAACCAAGGTGAGGAAGGATTGGGTTGTCCCGGCTGACCTGTTCGGGACGCTGCCCGGGAAGCCAGACCGTACGTGCTCGACCAAGAACGGCGTCGTCCAGTACATCTACAACAACCCAGTTCCAGCCCGAGAAGCACATTGGCGAGACCCTCAAGATCCTCCAGAGCCTCTGATTCTCTTCTTCTTCTTCCTCCTTTTTTAACTCACAATCTCTCAATGTATGATCCTATCCACAGTATACCGAGAAATTAATCCATCTGTTAATCTCTTCTCGATCGTTTTTCTCCCTCGCGCATGTGTATAGCTAGTGTATCTGTAACTCTGTGAGTATATATCCAGTCAAAATCGGTGGGCTGCTAGCTCTGAA TTTCCCGTAAGCCAaaaaaaaaa                       ]


>consensus_13579#1 ACCACCAACCAAACACACACACCCAAACCCGACGAACAGCCGCAGCTGCAGGCCACGCAT CCTCGCCGTGAATCTCCCACCGCGCTCCGGCGATGGCATTCGCGGTCTCCACCGCCTGCA GGCCGTCCCTGCTCCTGCCCCCGCGCCAGCGCTCGTCGCCGCCGCGGCCGCGGCCGCTCC TCTGCACGCCCTCCACCGCCGCCTTCCGCCGCGGCGCCCTCAGCGCGACAACAACGCCAA CGCCGGCGCGCGCAGCACTGCCGTCGACGACGGGGAGGAACAGGATCGTCTGCGGCAAGG TGAGCAAGGGCAGCGCGGCGCCCAACTTCACGCTGAGGGACCAGGACGGGAGGGCGGTGT CGCTGTCCAAGTTCAAGGGGAGGCCGGTGGTGGTGTACTTCTACCCCGCCGACGAGACCC CCGGATGCACCAAGCAGGCCTGCGCCTTCCGCGACTCCTACGAGAAGTTCAAGAAGGCCG GCGCCGAGGTCATCGGCATCAGCGGCGACGACGCCGCCTCCCACAAGGAGTTCAAGAAGA AGTACAAGCTGCCGTTCACGCTGCTGAGCGACGAGGGGAACAAGGTGAGGAAGGAGTGGG GTGTGCCGGCTGACCTGTTCGGGACGCTGCCGGGAAGGCAGACGTACGTGCTCGACAAGA ACGGCGTCGTCCAGTACATCTACAACAACCAGTTCCAGCCCGAGAAGCACATTGGCGAGA CCCTCAAGATCCTCCAGAGCCTCTGATTCTCTTCTTCTTCTTCCTCCTTTTTTAACTACA ATCTCTCATGTATGATCCATCACAGTATACCGAGAAATTAATCCATCTGTTAATCTCTTC TCGATCGTTTTTCTCCCTCGGCATGTGTATAGCTAGTGTATCTGTAACTCTGTGAGTATA TATACAGTCAAAATCGGTGGGCTGCTAGCTCTGAATTTTGCCGTAAGGCACTCTGATTTT CTCTACTTGGATTAATTTACTA



consensusID : consensus_13579#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence
                              [TCGGCACGAGATGGTTTGTCAGGTATGTTAACTATATATATATAGCAGAGAGAGAGGAACAATGATAGGATGGACGTGTCTCCGTCCNCTTCAANGGGAGGCCGGTGGTGGTGTNCTTCTNCCCCGCCGACGAGACCCCCGGATGCACCAAGCANGCCTGCGCCTTCCGCGACTCCTACGAGAAGTTCAANAANGCCGGCGCCGAGGTCATCGGCATCAGCGGCGACGACGCCGCCTCCCACNANGAGTTCAANANGAANTNCAAGCTGCCGTTCACGCTGCTTATNNACTTAGGGGAACAAGGTGAGGAANGAGTGGGGTGTGCCGGCTGACCTGTTCNGGACNCTGCCGGGAAGGCANACNTACNTGCTCNACNANAACNGCGTCGTCCAATACATCTNCTACNANCTGTTCCAGCCCGAGAAGCACTTTGGCGAGACCCNCCTNATCCTCCAAAAGCCTCTGATTCTCTTCTTCTTCTTCC]

[+] EMBL AA753121             [TCGGCACGAGATGGTTTGTCAGGTATGTTAACTATATATATATAGCAGAGAGAGAGGAACAATGATAGGATGGACGTGTCTCCGTCCNCTTCAANGGGAGGCCGGTGGTGGTGTNCTTCTNCCCCGCCGACGAGACCCCCGGATGCACCAAGCANGCCTGCGCCTTCCGCGACTCCTACGAGAAGTTCAANAANGCCGGCGCCGAGGTCATCGGCATCAGCGGCGACGACGCCGCCTCCCACNANGAGTTCAANANGAANTNCAAGCTGCCGTTCACGCTGCTTATNNACTTAGGGGAACAAGGTGAGGAANGAGTGGGGTGTGCCGGCTGACCTGTTCNGGACNCTGCCGGGAAGGCANACNTACNTGCTCNACNANAACNGCGTCGTCCAATACATCTNCTACNANCTGTTCCAGCCCGAGAAGCACTTTGGCGAGACCCNCCTNATCCTCCAAAAGCCTCTGATTCTCTTCTTCTTCTTCC]


>consensus_13579#2 TCGGCACGAGATGGTTTGTCAGGTATGTTAACTATATATATATAGCAGAGAGAGAGGAAC AATGATAGGATGGACGTGTCTCCGTCCNCTTCAANGGGAGGCCGGTGGTGGTGTNCTTCT NCCCCGCCGACGAGACCCCCGGATGCACCAAGCANGCCTGCGCCTTCCGCGACTCCTACG AGAAGTTCAANAANGCCGGCGCCGAGGTCATCGGCATCAGCGGCGACGACGCCGCCTCCC ACNANGAGTTCAANANGAANTNCAAGCTGCCGTTCACGCTGCTTATNNACTTAGGGGAAC AAGGTGAGGAANGAGTGGGGTGTGCCGGCTGACCTGTTCNGGACNCTGCCGGGAAGGCAN ACNTACNTGCTCNACNANAACNGCGTCGTCCAATACATCTNCTACNANCTGTTCCAGCCC GAGAAGCACTTTGGCGAGACCCNCCTNATCCTCCAAAAGCCTCTGATTCTCTTCTTCTTC TTCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13579#0      ---------------------------------------CCGCAGCTGCAGGCCACGCAT 21
consensus_13579#1      ACCACCAACCAAACACACACACCCAAACCCGACGAACAGCCGCAGCTGCAGGCCACGCAT 60
consensus_13579#2      ------------------------------------------------------------
                                                                                   

consensus_13579#0      CCTCGCCGTGAATCTCCCACCGCGCTCCGGCGATGGCATTCGCGGTCTCCACCGCCTGCA 81
consensus_13579#1      CCTCGCCGTGAATCTCCCACCGCGCTCCGGCGATGGCATTCGCGGTCTCCACCGCCTGCA 120
consensus_13579#2      ------------------------------------------------------------
                                                                                   

consensus_13579#0      GGCCGTCCCTGCTCCTGCCCCCGCGCCAGCGCTCGTCGCCGCCGCGGCCGCGGCCGCTCC 141
consensus_13579#1      GGCCGTCCCTGCTCCTGCCCCCGCGCCAGCGCTCGTCGCCGCCGCGGCCGCGGCCGCTCC 180
consensus_13579#2      ------------------------------------------------------------
                                                                                   

consensus_13579#0      TCTGCACGCCCTCCACCGCCGCCTTCCGCCGCGGCGCCCTCAGCGCGACAACAACGCCAA 201
consensus_13579#1      TCTGCACGCCCTCCACCGCCGCCTTCCGCCGCGGCGCCCTCAGCGCGACAACAACGCCAA 240
consensus_13579#2      ------------------------------------------------------------
                                                                                   

consensus_13579#0      CGCCGGCGCGCGCAGCACTGCCGTCGACGACGGGGAGGAACAGGATCGTCTGCGGCAAGG 261
consensus_13579#1      CGCCGGCGCGCGCAGCACTGCCGTCGACGACGGGGAGGAACAGGATCGTCTGCGGCAAGG 300
consensus_13579#2      ------------------------------------------------------------
                                                                                   

consensus_13579#0      TGACGACGACGAACAATTACCCCTCCTCCTGTCGCAGTCGCAGGAGCACGATGATGCACG 321
consensus_13579#1      TGA--------------------------------------------------------- 303
consensus_13579#2      ------------------------------------------------------------
                                                                                   

consensus_13579#0      CCGCCGCGTGGCTGCTGCTGCAGCAGCTGAGCCCAGCAGCAGCGCGCGTGGCGCGGGCGG 381
consensus_13579#1      ------------------------------------------------------------
consensus_13579#2      ------------------------------------------------------------
                                                                                   

consensus_13579#0      CTGATGACGATTCGTCGGTGCAGGTGAGCAAGGGCAGCGCGGCGCCCA-ACTTCACGCTG 440
consensus_13579#1      ---------------------------GCAAGGGCAGCGCGGCGCCCA-ACTTCACGCTG 335
consensus_13579#2      ------TCGGCACGAGATGGTTTGTCAGGTATGTTAACTATATATATATAGCAGAGAGAG 54
                                                  *  * *  * *         * *    *    *

consensus_13579#0      AGGGACCAGGACGGGAGGGCGGTGTCGCTGTCCAAGTTCAAGGGGAGGCCGGTGGTGGTG 500
consensus_13579#1      AGGGACCAGGACGGGAGGGCGGTGTCGCTGTCCAAGTTCAAGGGGAGGCCGGTGGTGGTG 395
consensus_13579#2      AGGAACAATGATAGGATGGACGTGTCTCCGTCCNC-TTCAANGGGAGGCCGGTGGTGGTG 113
                       *** ** * **  *** **  ***** * ****   ***** ******************

consensus_13579#0      TACTTCTACCCCGCCGACGAGACCCCCGGATGCACCAAGCAGGCCTGCGCCTTCCGCGAC 560
consensus_13579#1      TACTTCTACCCCGCCGACGAGACCCCCGGATGCACCAAGCAGGCCTGCGCCTTCCGCGAC 455
consensus_13579#2      TNCTTCTNCCCCGCCGACGAGACCCCCGGATGCACCAAGCANGCCTGCGCCTTCCGCGAC 173
                       * ***** ********************************* ******************

consensus_13579#0      TCCTACGAGAAGTTCAAGAAGGCCGGCGCCGAGGTCATCGGCATCAGCGGCGACGACGCC 620
consensus_13579#1      TCCTACGAGAAGTTCAAGAAGGCCGGCGCCGAGGTCATCGGCATCAGCGGCGACGACGCC 515
consensus_13579#2      TCCTACGAGAAGTTCAANAANGCCGGCGCCGAGGTCATCGGCATCAGCGGCGACGACGCC 233
                       ***************** ** ***************************************

consensus_13579#0      GCCTCCCACAAGGAATTCAAGCAGAAGTACAAGCTGCCGTTCACGCTGCTGAGCGACG-A 679
consensus_13579#1      GCCTCCCACAAGGAGTTCAAGAAGAAGTACAAGCTGCCGTTCACGCTGCTGAGCGACG-A 574
consensus_13579#2      GCCTCCCACNANGAGTTCAANANGAANTNCAAGCTGCCGTTCACGCTGCTTATNNACTTA 293
                       ********* * ** *****   *** * ********************* *   **  *

consensus_13579#0      GGGGAACAAGGTGAGGAAGGAGTGGGGTGTGCCGGCTGACCTGTTCGGGACGCTGCCGGG 739
consensus_13579#1      GGGGAACAAGGTGAGGAAGGAGTGGGGTGTGCCGGCTGACCTGTTCGGGACGCTGCCGGG 634
consensus_13579#2      GGGGAACAAGGTGAGGAANGAGTGGGGTGTGCCGGCTGACCTGTTCNGGACNCTGCCGGG 353
                       ****************** *************************** **** ********

consensus_13579#0      AAGGCAGACGTACGTGCTCGACAAGAACGGCGTCGTCCAGTACATCTACAACAACCAGTT 799
consensus_13579#1      AAGGCAGACGTACGTGCTCGACAAGAACGGCGTCGTCCAGTACATCTACAACAACCAGTT 694
consensus_13579#2      AAGGCANACNTACNTGCTCNACNANAACNGCGTCGTCCAATACATCTNCTACNANCTGTT 413
                       ****** ** *** ***** ** * *** ********** ******* * ** * * ***

consensus_13579#0      CCAGCCCGAGAAGCACATTGGCGAGACCCTCAAGATCCTCCAGA-GCCTCTGATTCTCTT 858
consensus_13579#1      CCAGCCCGAGAAGCACATTGGCGAGACCCTCAAGATCCTCCAGA-GCCTCTGATTCTCTT 753
consensus_13579#2      CCAGCCCGAGAAGCACTTTGGCGAGACCCNCCTNATCCTCCAAAAGCCTCTGATTCTCTT 473
                       **************** ************ *   ******** * ***************

consensus_13579#0      CTTCTTCTTCCTCCTTTTTTAACTACAATCTCTCATGTATGATCCATCACAGTATACCGA 918
consensus_13579#1      CTTCTTCTTCCTCCTTTTTTAACTACAATCTCTCATGTATGATCCATCACAGTATACCGA 813
consensus_13579#2      CTTCTTCTTCC------------------------------------------------- 484
                       ***********                                                 

consensus_13579#0      GAAATTAATCCATCTGTTAATCTCTTCTCGATNNTTTTTCTCCCTCGGNATGTGTNTAGC 978
consensus_13579#1      GAAATTAATCCATCTGTTAATCTCTTCTCGATCGTTTTTCTCCCTCGGCATGTGTATAGC 873
consensus_13579#2      ------------------------------------------------------------
                                                                                   

consensus_13579#0      TAGTGTATCTGTAACTCTGTGAGTATATATACAGTCCAAATCGGTGGGCTGCTAACTCTG 1038
consensus_13579#1      TAGTGTATCTGTAACTCTGTGAGTATATATACAGTCAAAATCGGTGGGCTGCTAGCTCTG 933
consensus_13579#2      ------------------------------------------------------------
                                                                                   

consensus_13579#0      AATTT-GCCGTNNGGCGGTNTANNANANTAAAAAGGNNN---------- 1076
consensus_13579#1      AATTTTGCCGTAAGGCACTCTGATTTTCTCTACTTGGATTAATTTACTA 982
consensus_13579#2      -------------------------------------------------
                                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)