cluster # 13586

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Oryza sativa
cluster # 13586 cluster # 13586 Sequences # 13 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13586#0 length = 625 sequences # 11

consensus_13586#1 length = 539 sequences # 1
consensus_13586#2 length = 175 sequences # 1

consensusID : consensus_13586#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 625
fasta sequence

                              [TTTTTAGTACTTACTGAGTATGAAGTTATATTGCATAGCGTAGATGTGAATATGAATATGTTTTTGATGAGGAGGATATATATATATATATATATATATGTATGTATGACAAGTAAAGTGAGAGAAATACAGTACTAGCTAGTACACCAACAGAAACACTAGGCCATCTTTGCCATGACCTCCTGGAGGATGATCTTGGTGTCGGCATAGGAGGAGCCGATCTGGGTGTCGTCCTTGGTGCCGCAGGCCTTCTGGAGGCGCTCGAAGCTGTCGAAGAGGCGGGTGGCGAGGTCGAGCAGCGGGGGGCGCTGGTCGTCGGAGGCGGCGGAGATGAGCTTGTCGAAGTCGAAGTACATGAAGGTGGACTTGAGGCGGAGGTACTTGGTGACGTAGTTGGCCCTGTCGGCGTTGTTGCCCAGCAGGTCCTCCAGCGCCAGCAGGTCGAACGCCGTGCTCCGCAGCCTGTACGCGTGCGCCGCGTAGCTCGGCCCGATGTCGGCTATGTAGATGCCGTTCCTCACGAACGTCCGGCTCCCCGTCTCGCCATTGTTCAGCTCCTTGTTGACAATCTTTGGCACCGGCAAAGGGAACTCGGTGAGCCACCACCCATTGTTTGCCGGCTCGT]

[+] EMBL CF277813             [TTTTTAGTACTTACTGAGTATGAAGTTATATTGCATAGCGTAGATGTGAATATGAATATGTGTGTGATGAGGAGG  ATATATATATATATATATATATGTATGTATGACAAGTAAAGTGAGAGAAATACAGTACTAGCTAGTACACCAACAGAAACACTAGGCCATCTTTGCCATGACCTCCTGGAGGATGATCTTGGTGTCGGCATAGGAGGAGCCGATCTGGGTGTCGTCCTTGGTGCCGCAGGCCTTCTGGAGGCGCTCGAAGCTGTCNAAGAGGCGGGTGGCGAGGTCNAGCAGCGGGGGGCGCTGGTCGTCGGAGGCGGCGGAGATGAGCTTGTCGAAGTCGAAGTACATGAAGGTGGACTTGAGGCGGAGGTAC                                                                                                                                                                                                                                                    ]
[+] EMBL CF279254             [                                                            TTTTTGATGAGGAGGATATATAT T TATATATATATATGTATGTATGACAAGTAAAGTGAGAGAAATACAGTACTAGCTAGTACACCAACAGAAACACTAGGCCATCTTTGCCATGACCTCCTGGAGGATGATCTTGGTGTCGGCATAGGAGGATTCTATCTGGGTGTCGTCCTTGGTGCCGCAGGCCTTCTGGAGGCTCTTTAAGCTGTCGAAGAGGCGGGTGGCGAGGTCGAGCAGCGGGGGGCGCTGGTCGTCGGAGGCGGCGGAGATGAGCTTGTCGAAGTCGAAGTACATGAAGGTGGACTTGAGGCGGAGGTACTTGGTGACGTAGTTGGCCCTGTCGGCGTTGTTGCCCAGCAGGTCCTCCAGCGCCAGCAGGTCGAACGCCGTGCTCCGCAGCCTGTACGCGTGCGCCGCGTAGCTCGGCCCGATGTCGGCTATGTAGATGCCGTTCCTCACGAACGTCCGGCTCCCCGTCTCGCCATTGTTCAGCTCCTTGTTGACAATCTTTGGCACCGGCAAAGGGAACTCGGTGAG                          ]
[+] EMBL CF277683             [                                                            TTTTTGATGAGGAGG    ATATATATATATATATATATGTATGTATGACAAGTAAAGTGAGAGAAATACAGTACTAGCTAGTACACCAACAGAAACACTAGGCCATCTTTGCCATGACCTCCTGGAGGATGATCTTGGTGTCGGCATAGGAGGAGCCGATCTGGGTGTCGTCCTTGGTGCCGCAGGCCTTCTGGAGGCGCTCGAAGCTGTCGAAGAGGCGGGTGGCGAGGTCGAGCAGCGGGGGGCGCTGGTCGTCGGAGGCGGCGGAGATGAGCTTGTCGAAGTCGAAGTACATGAAGGTGGACTTGAGGCGGAGGTACTTGGTGACGTAGTTGGCCCTGTCGGCGTTGTTGCCCAGCAGGTCCTCCAGCGCCAGCAGGTCGAACGCCGTGCTCCGCAGCCTGTACGCGTGCGCCGCGTAGCTCGGCCCGATGTCGGCTATGTAGATGCCGTTCCTCACGAACGTCCGGCTCCCCGTCTCGCCATTGTTCAGCTCCTTGTTGACAATCTTTGGCACCGGCAAAGGGAACTCGGTGAGCCACCACCCATTGTTTGCCGGCTCGT]
[+] EMBL CF291373             [                                                            TTTTTGATGAGGAGGATATATATATATATATATATATATGTATGTATGACAAGTAAAGTGAGAGAAATACAGTACTAGCTAGTACACCAACAGAAACACTAGGCCATCTTTGCCATGACCTCCTGGAGGATGATCTTGGTGTCGGCATAGGAGGAGCCGATCTGGGTGTCGTCCTTGGTGCCGCAGGCCTTCTGGAGGCGCTCGAAGCTGTCGAAGAGGCGGGTGGCGAGGTCGAGCAGCGGGGGGCGCTGGTCGTCGGAGGCGGCGGAGATGAGCTTGTCGAAGTCGAAGTACATGAAGGTGGACTTGAGGCGGAGGTACTTGGTGACGTAGTTGGCCCTGTCGGCGTTGTTGCCCAGCAGGTCCTCCAGCGCCAGCAGGTCGAACGCCGTGCTCCGCAGCCTGTACGCGTGCG                                                                                                                                                      ]
[+] EMBL CF333226             [                                                        tttttgtgTGATGAGGAGGATATATATATATATATATATATATGTATGTATGACAAGTAAAGTGAGAGAAATACAGTACTAGCTAGTACACCAACAGAAACACTAGGCCATCTTTGCCATGACCTCCTGGAGGATGATCTTGGTGTCGGCATAGGAGGAGCCGATCTGGGTGTCGTCCTTGGTGCCGCAGGCCTTCTGGAGGCGCTCGAAGCTGTCGAAGAGGCGGGTGGCGAGGTCGAGCAGCGGGGGGCGCTGGTCGTCGGAGGCGGCGGAGATGAGCTTGTCGAAGTCGAAGTACATGAAGGTGGACTTGAGGCGGAGGTACTTGGTGACGTAGTTGGCCCTGTCGGCGTTGTTGCCCAGCAGGTCCTCCAGCGCCAGCAGGTCGAACGCCGTGCACCGCAGCCTGTACGCGTGCGCCGCGTAGCTCGGCCCGATGTCGGCTATGTAGATGCCGTTCCTCACGAACGTCCGGCTCCCCGTCTCGCCATTGTTCAGCTCCTTGTTGACAATCTTTGGCACCGGCAAAGGGAACTCGGTGAGCCACCACCCATTGTTTGCCGGCTCGT]
[-] EMBL AK068377             [                                                                             ATATATATATATATATATATATGTATGTATGACAAGTAAAGTGAGAGAAATACAGTACTAGCTAGTACACCAACAGAAACACTAGGCCATCTTTGCCATGACCTCCTGGAGGATGATCTTGGTGTCGGCATAGGAGGAGCCGATCTGGGTGTCGTCCTTGGTGCCGCAGGCCTTCTGGAGGCGCTCGAAGCTGTCGAAGAGGCGGGTGGCGAGGTCGAGCAGCGGGGGGCGCTGGTCGTCGGAGGCGGCGGAGATGAGCTTGTCGAAGTCGAAGTACATGAAGGTGGACTTGAGGCGGAGGTACTTGGTGACGTAGTTGGCCCTGTCGGCGTTGTTGCCCAGCAGGTCCTCCAGCGCCAGCAGGTCGAACGCCGTGCTCCGCAGCCTGTACGCGTGCGCCGCGTAGCTCGGCCCGATGTCGGCTATGTAGATGCCGTTCCTCACGAACGTCCGGCTCCCCGTCTCGCCATTGTTCAGCTCCTTGTTGACAATCTTTGGCACCGGCAAAGGGAACTCGGTGAGCCACCACCCATTGTTTGCCG      ]
[-] EMBL CB683674             [                                                                              TATATATATATATATATATAGGTATGTATGACAAGTAAAGTGAGAGAAATACAGTACTAGCTAGTACACCAACAGAAACACTAGGCCATCTTTGCCATGACCTCCTGGAGGATGATCTTGGTGTCGGCATAGGAGGAGCCGATCTGGGTGTCGTCCTTGGTGCCGCAGGCCTTCTGGAGGCGCTCGAAGCTGTCGAAGAGGCGGGTGGCGAGGTCGAGCAGCGGGGGGCGCTGGTCGTCGGAGGCGGCGGAGATGAGCTTGTCGAAGTCGAAGTACATGAAGGTGGACTTGAGGCGGAGGTACTTGGTGACGTAGTTGGCCCTGTCGGCGTTGTTGCCCAGCAGGTCCTCCAGCGCCAGCAGGTCGAACGCCGTGCTCCGCAGCCTGTACGCGTGCGCCGCGTAGCTCGGCCCGATGTCGGCTATGTAGATGCCGTTCCTCACGAACGTCCGGCTCCCCGTCTCGCCATTGTTCAGCTCCTTGTTGACAATCTTTGGCACCGGCAAAGGGAACTCGGTGAGCCACCACCCATTGTTTGCCG      ]
[-] EMBL CF277814             [                                                                                                                                                                                                                                                                                                                                                   TCGAAGTCGAAGTACATGAAGGTGGACTTGAGGCGGAGGTACTTGGTGACGTAGTTGGCCCTGTCGGCGTTGTTGCCCAGCAGGTCCTCCAGCGCCGGCAGGTCGAACGCCGTGCTCCGCAGCCTGTACGCGTGCGCCGCGTAGCTCGGCCCGATGTCGGCTATGTAGATGCCGTTCCTCACGAACGTCCGGCTCCCCGTCTCGCCATTGTTCAGCTCCTTGTTGACAATCTTTGGCACCGGCAAAGGGAACTCGGTGAGCCACCACCCATTGTTTGCCG      ]
[-] EMBL CF291372             [                                                                                                                                                                                                                                                                                                                                                   TCGAAGTCGAAGTACATGAAGGTGGACTTGAGGCGGAGGTACTTGGTGACGTAGTTGGCCCTGTCGGCGTTGTTGCCCAGCAGGTCCTCCAGCGCCAGCAGGTCGAACGCCGTGCTCCGCAGCCTGTACGCGTGCGCCGCGTAGCTCGGCCCGATGTCGGCTATGTAGATGCCGTTCCTCACGAACGTCCGGCTCCCCGTCTCGCCATTGTTCAGCTCCTTGTTGACAATCTTTGGCACCGGCAAAGGGAACTCGGTGAGCCACCACCCATTG NTGCCG      ]
[-] EMBL CF277684             [                                                                                                                                                                                                                                                                                                                                                              GTACATGAAGGTGGACTTGAGGCGGAGGTACTTGGTGACGTAGTTGGCCCTGTCGGCGTTGTTGCCCAGCAGGTCCTCCAGCGCCAGCAGGTCGAACGCCGTGCTCCGCAGCCTGTACGCGTGCGCCGCGTAGCTCGGCCCGATGTCGGCTATGTAGATGCCGTTCCTCACGAACGTCCGGCTCCCCGTCTCGCCATTGTTCAGCTCCTTGTTGACAATCTTTGGCACCGGCAAAGGGAACTCGGTGAGCCACCACCCATTGTTTGCCG      ]
[-] EMBL CF279253             [                                                                                                                                                                                                                                                                                                                                                                                                  GACGTAGTTGGCCCTGTCGGCGTTGTTGCCCAGCAGGTCCTCCAGCGCCAGCAGGTCGAACGCCGTGCTCCGCAGCCTGTACGCGTGCGCCGCGTAGCTCGGCCCGATGTCGGCTATGTAGATGCCGTTCCTCACGAACGTCCGGCTCCCCGTCTCGCCATTGTTCAGCTCCTTGTTGACAATCTTTGGCACCGGCAAAGGGAACTCGGTGAGCCACCACCCATTGTTTGCCG      ]




>consensus_13586#0
TTTTTAGTACTTACTGAGTATGAAGTTATATTGCATAGCGTAGATGTGAATATGAATATG
TTTTTGATGAGGAGGATATATATATATATATATATATATGTATGTATGACAAGTAAAGTG
AGAGAAATACAGTACTAGCTAGTACACCAACAGAAACACTAGGCCATCTTTGCCATGACC
TCCTGGAGGATGATCTTGGTGTCGGCATAGGAGGAGCCGATCTGGGTGTCGTCCTTGGTG
CCGCAGGCCTTCTGGAGGCGCTCGAAGCTGTCGAAGAGGCGGGTGGCGAGGTCGAGCAGC
GGGGGGCGCTGGTCGTCGGAGGCGGCGGAGATGAGCTTGTCGAAGTCGAAGTACATGAAG
GTGGACTTGAGGCGGAGGTACTTGGTGACGTAGTTGGCCCTGTCGGCGTTGTTGCCCAGC
AGGTCCTCCAGCGCCAGCAGGTCGAACGCCGTGCTCCGCAGCCTGTACGCGTGCGCCGCG
TAGCTCGGCCCGATGTCGGCTATGTAGATGCCGTTCCTCACGAACGTCCGGCTCCCCGTC
TCGCCATTGTTCAGCTCCTTGTTGACAATCTTTGGCACCGGCAAAGGGAACTCGGTGAGC
CACCACCCATTGTTTGCCGGCTCGT

consensusID : consensus_13586#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 539
fasta sequence

                              [TATATATATATCCTTTTATATGTATGTATGACAAGTAAAGTGAGAGAAATACAGTACTAGCTAGTACACCAACAGAAACACTACCGCCATCTTTGCCATGACCTCCTGGAGGATGATCTTGGTGTCGGCATAGGAGGAGCCGATCTGGGTGTCGTCCTTGGTGCCGCAGGCCTTCTGGAGGCGCTCGAAGCTGTCGAAGAGGCGGGTGGCGAGGTCGAGCAGCGGGGGGCGCTGGTCGTCCGAGGCGGCGGAGATGAGCTTGTCCAAGTCGAAGTACATGAAGGTGGACTTGAGGCGGAGGTACTTGGTGACGTAGTTGGCCCTGTCGGCGTTGTTGCCCAGCAGGTCCTCCAGCGCCAGCAGGTCGAACGCCGTGCTCCGCAGCCTGTACGCGTGCGCCGCGTAGCTCGGCCCGATGTCGGCTATGTAGATGCCGTTCCTCACGAACGTCCGGCTCCCCGTCTCGCCATTGTTCAGCTCCTCTGCACACACAATATATATATATATATATATATATATATATATATATATATATATAT]

[+] EMBL CB683571             [TATATATATATCCTTTTATATGTATGTATGACAAGTAAAGTGAGAGAAATACAGTACTAGCTAGTACACCAACAGAAACACTACCGCCATCTTTGCCATGACCTCCTGGAGGATGATCTTGGTGTCGGCATAGGAGGAGCCGATCTGGGTGTCGTCCTTGGTGCCGCAGGCCTTCTGGAGGCGCTCGAAGCTGTCGAAGAGGCGGGTGGCGAGGTCGAGCAGCGGGGGGCGCTGGTCGTCCGAGGCGGCGGAGATGAGCTTGTCCAAGTCGAAGTACATGAAGGTGGACTTGAGGCGGAGGTACTTGGTGACGTAGTTGGCCCTGTCGGCGTTGTTGCCCAGCAGGTCCTCCAGCGCCAGCAGGTCGAACGCCGTGCTCCGCAGCCTGTACGCGTGCGCCGCGTAGCTCGGCCCGATGTCGGCTATGTAGATGCCGTTCCTCACGAACGTCCGGCTCCCCGTCTCGCCATTGTTCAGCTCCTCTGCACACACAATATATATATATATATATATATATATATATATATATATATATATAT]




>consensus_13586#1
TATATATATATCCTTTTATATGTATGTATGACAAGTAAAGTGAGAGAAATACAGTACTAG
CTAGTACACCAACAGAAACACTACCGCCATCTTTGCCATGACCTCCTGGAGGATGATCTT
GGTGTCGGCATAGGAGGAGCCGATCTGGGTGTCGTCCTTGGTGCCGCAGGCCTTCTGGAG
GCGCTCGAAGCTGTCGAAGAGGCGGGTGGCGAGGTCGAGCAGCGGGGGGCGCTGGTCGTC
CGAGGCGGCGGAGATGAGCTTGTCCAAGTCGAAGTACATGAAGGTGGACTTGAGGCGGAG
GTACTTGGTGACGTAGTTGGCCCTGTCGGCGTTGTTGCCCAGCAGGTCCTCCAGCGCCAG
CAGGTCGAACGCCGTGCTCCGCAGCCTGTACGCGTGCGCCGCGTAGCTCGGCCCGATGTC
GGCTATGTAGATGCCGTTCCTCACGAACGTCCGGCTCCCCGTCTCGCCATTGTTCAGCTC
CTCTGCACACACAATATATATATATATATATATATATATATATATATATATATATATAT

consensusID : consensus_13586#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 175
fasta sequence

                              [CGGCAAACAATGGGTGGTGGCTCACCGAGTTCCCTTTGCCGGTGCCAAAGATTGTCAACAGTGAGTAGTAAATTAATTACCATTACACACACAAAATATATAAATATAGGGATTGCAATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT]

[+] EMBL CB683158             [CGGCAAACAATGGGTGGTGGCTCACCGAGTTCCCTTTGCCGGTGCCAAAGATTGTCAACAGTGAGTAGTAAATTAATTACCATTACACACACAAAATATATAAATATAGGGATTGCAATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT]




>consensus_13586#2
CGGCAAACAATGGGTGGTGGCTCACCGAGTTCCCTTTGCCGGTGCCAAAGATTGTCAACA
GTGAGTAGTAAATTAATTACCATTACACACACAAAATATATAAATATAGGGATTGCAATA
TATATATATATATATATATATATATATATATATATATATATATATATATATATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13586#0      TTTTTAGTACTTACTGAGTATGAAGTTATATTGCATAGCGTAGATGTGAATATGAATATG 60
consensus_13586#1      ------------------------------------------------------------
consensus_13586#2      ------------------------------------------------------------
                                                                                   

consensus_13586#0      TTTTTGATGAGGAGGATATATATATATATATATATATATGTATGTATGACAAGTAAAGTG 120
consensus_13586#1      ------------------TATATATATATCCTTTTATATGTATGTATGACAAGTAAAGTG 42
consensus_13586#2      ------------------------------------------------------------
                                                                                   

consensus_13586#0      AGAGAAATACAGTACTAGCTAGTACACCAACAGAAACACTAG-GCCATCTTTGCCATGAC 179
consensus_13586#1      AGAGAAATACAGTACTAGCTAGTACACCAACAGAAACACTACCGCCATCTTTGCCATGAC 102
consensus_13586#2      ------------------------------------------------------------
                                                                                   

consensus_13586#0      CTCCTGGAGGATGATCTTGGTGTCGGCATAGGAGGAGCCGATCTGGGTGTCGTCCTTGGT 239
consensus_13586#1      CTCCTGGAGGATGATCTTGGTGTCGGCATAGGAGGAGCCGATCTGGGTGTCGTCCTTGGT 162
consensus_13586#2      ------------------------------------------------------------
                                                                                   

consensus_13586#0      GCCGCAGGCCTTCTGGAGGCGCTCGAAGCTGTCGAAGAGGCGGGTGGCGAGGTCGAGCAG 299
consensus_13586#1      GCCGCAGGCCTTCTGGAGGCGCTCGAAGCTGTCGAAGAGGCGGGTGGCGAGGTCGAGCAG 222
consensus_13586#2      ------------------------------------------------------------
                                                                                   

consensus_13586#0      CGGGGGGCGCTGGTCGTCGGAGGCGGCGGAGATGAGCTTGTCGAAGTCGAAGTACATGAA 359
consensus_13586#1      CGGGGGGCGCTGGTCGTCCGAGGCGGCGGAGATGAGCTTGTCCAAGTCGAAGTACATGAA 282
consensus_13586#2      ------------------------------------------------------------
                                                                                   

consensus_13586#0      GGTGGACTTGAGGCGGAGGTACTTGGTGACGTAGTTGGCCCTGTCGGCGTTGTTGCCCAG 419
consensus_13586#1      GGTGGACTTGAGGCGGAGGTACTTGGTGACGTAGTTGGCCCTGTCGGCGTTGTTGCCCAG 342
consensus_13586#2      ------------------------------------------------------------
                                                                                   

consensus_13586#0      CAGGTCCTCCAGCGCCAGCAGGTCGAACGCCGTGCTCCGCAGCCTGTACGCGTGCGCCGC 479
consensus_13586#1      CAGGTCCTCCAGCGCCAGCAGGTCGAACGCCGTGCTCCGCAGCCTGTACGCGTGCGCCGC 402
consensus_13586#2      ------------CGGCAAACAATGGGTGGTGGCTCACCGAGTTCCCTTTGCCGGTGCCAA 48
                                   ** **     * *   *  *  * ***    *  *  **  * ***  

consensus_13586#0      GTAGCTCGGCCCGATGTCGGCTATGTAGATGCCGTTCCTCACGAACGTCCGGCTCCCCGT 539
consensus_13586#1      GTAGCTCGGCCCGATGTCGGCTATGTAGATGCCGTTCCTCACGAACGTCCGGCTCCCCGT 462
consensus_13586#2      AGATTGTCAACAGTGAGTAGTAAATTAATTACCATTACACACACAAAATA---TATAAAT 105
                         *       * *      *  *  **  * ** ** * ***  *        *     *

consensus_13586#0      CTCGCCATTGTTCAGCTCCTTGTTGACAATCTTTGGCACCGGCAAAGGGAACTCGGTGAG 599
consensus_13586#1      CTCGCCATTGTTCAGCTCCTCTGCACACACAATATATATATATATATATATATATATATA 522
consensus_13586#2      ATAGGGATTG--CAATATATATATATATATA-TATATATATATATATATATATATATATA 162
                        * *  ****  **     *        *   *    *     * *   *  *   *   

consensus_13586#0      CCACCACCCAT-TGTTTGCCGGCTCGT 625
consensus_13586#1      TATATATATATATATAT---------- 539
consensus_13586#2      TATATATATATAT-------------- 175
                            *   ** *