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Oryza sativa
cluster # 13587 cluster # 13587       Sequences # 13       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13587#0 length = 1038 sequences # 10  
consensus_13587#1 length = 659 sequences # 1  
consensus_13587#2 length = 586 sequences # 1  
consensus_13587#3 length = 483 sequences # 1  

consensusID : consensus_13587#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1038
fasta sequence
                              [AATCCAATATAAATCGCAGCGTTCCCCGTCCCTCTCTCTCCTTTCCTCCTCCCTCCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCGCCTCCTCTTTGTTTCTCCTCTTAGGGGCTAGGGCTTGGCTTTCGAGAGGCAGCACCGCCGCCGGGGCAATCGAGCAGGCGGAGGGGAGGAGCTAATCAAATCAAGTCAAATCGAATCAAATCAAATTCAAATTCAAATTCGACTAGGGCAGCAGGAGGAGGATGGTTTCCCTGTCGACGTGGTTTCGCTACGCCGCGCACAAGTTCGAGTACTCCATCTCCCTCTCATGGAAGAAGTATAACGTTGGCCAGATCAACAGCACCCAGTTAACCGATGCCGTCTGGAAGAACTTCTTCCAAGGCAAGCTCACCTACATGCATTGGAACAAGGGGGGAGAAGCCATGGCCCCCATCGAATCTACTACGGGAGGAACCCTCCTTGTTAGAAAGCTCGTCAATTTGTCTCCAACACAAGTCTTTGTTGGTG-ATGTTGTCTTACTAAAAGACCCAGAGAAATCTGATGATTTAATCGTTCGAC-GATTGGCTGCCCTAGAAGGTTATGAGATGGTCTCTAATGATGAGAAGGATGAGCCGTTTGTACTTGACAAGGATCAAT-GCTGGGTTCTGGCAGACAACCAATCACTAAAGCCAAAGGAAGCTAGGGATAGCCGCTTGTTTGGACCAGTCCCTATGACTGATATCCTTGGCAGAGTGATATACTCTTTAAGAACGGCTGTCGACCATGGCCCAGTGGAGAACAGCCGAATGGCCATGAACCAGGATTCACCAGTTCTGGCAGTAGAGCTTGATGTGGAAGAGATGGCGAAGAATAATAAAGTGTAGATAATTAGTGCTTTTGACGTGCTGTGGTGTAACTTTTCCCTTCGATGGATTTT-GTTATTCGAGAGATTAGTTGCTTCAAGTAGAACATTATTCTGAACTTGTTCACTATTTACTCGTGGAGAAGTCAATAATCATAAGAATAACCATACGGGTTGCTAAAAAAAAAACA]

[+] EMBL AK104417             [AATCCAATATAAATCGCAGCGTTCCCCGTCCCTCTCTCTCCTTTCCTCCTCCCTCCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCGCCTCCTCTTTGTTTCTCCTCTTAGGGGCTAGGGCTTGGCTTTCGAGAGGCAGCACCGCCGCCGGGGCAATCGAGCAGGCGGAGGGGAGGAGCTAATCAAATCAAGTCAAATCGAATCAAATCAAATTCAAATTCAAATTCGACTAGGGCAGCAGGAGGAGGATGGTTTCCCTGTCGACGTGGTTTCGCTACGCCGCGCACAAGTTCGAGTACTCCATCTCCCTCTCATGGAAGAAGTATAACGTTGGCCAGATCAACAGCACCCAGTTAACCGATGCCGTCTGGAAGAACTTCTTCCAAGGCAAGCTCACCTACATGCATTGGAACAAGGGGGGAGAAGCCATGGCCCCCATCGAATCTACTACGGGAGGAACCCTCCTTGTTAGAAAGCTCGTCAATTTGTCTCCAACACAAGTCTTTGTTGGTG ATGTTGTCTTACTAAAAGACCCAGAGAAATCTGATGATTTAATCGTTCGAC GATTGGCTGCCCTAGAAGGTTATGAGATGGTCTCTAATGATGAGAAGGATGAGCCGTTTGTACTTGACAAGGATCAAT GCTGGGTTCTGGCAGACAACCAATCACTAAAGCCAAAGGAAGCTAGGGATAGCCGCTTGTTTGGACCAGTCCCTATGACTGATATCCTTGGCAGAGTGATATACTCTTTAAGAACGGCTGTCGACCATGGCCCAGTGGAGAACAGCCGAATGGCCATGAACCAGGATTCACCAGTTCTGGCAGTAGAGCTTGATGTGGAAGAGATGGCGAAGAATAATAAAGTGTAGATAATTAGTGCTTTTGACGTGCTGTGGTGTAACTTTTCCCTTCGATGGATTTT GTTATTCGAGAGATTAGTTGCTTCAAGTAGAACATTATTCTGAACTTGTTCACTATTTACTCGTGGAGAAGTCAATAATCATAAGAATAACCAT                      ]
[+] EMBL AK070814             [AATCCAATATAAATCGCAGCGTTCCCCGTCCCTCTCTCTCCTTTCCTCCTCCCTCCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCGCCTCCTCTTTGTTTCTCCTCTTAGGGGCTAGGGCTTGGCTTTCGAGAGGCAGCACCGCCGCCGGGGCAATCGAGCAGGCGGAGGGGAGGAGCTAATCAAATCAAGTCAAATCGAATCAAATCAAATTCAAATTCAAATTCGACTAGGGCAGCAGGAGGAGGATGGTTTCCCTGTCGACGTGGTTTCGCTACGCCGCGCACAAGTTCGAGTACTCCATCTCCCTCTCATGGAAGAAGTATAACGTTGGCCAGATCAACAGCACCCAGTTAACCGATGCCGTCTGGAAGAACTTCTTCCAAGGCAAGCTCACCTACATGCATTGGAACAAGGGGGGAGAAGCCATGGCCCCCATCGAATCTACTACGGGAGGAACCCTCCTTGTTAGAAAGCTCGTCAATTTGTCTCCAACACAAGTCTTTGTTGGTG ATGTTGTCTTACTAAAAGACCCAGAGAAATCTGATGATTTAATCGTTCGAC GATTGGCTGCCCTAGAAGGTTATGAGATGGTCTCTAATGATGAGAAGGATGAGCCGTTTGTACTTGACAAGGATCAAT GCTGGGTTCTGGCAGACAACCAATCACTAAAGCCAAAGGAAGCTAGGGATAGCCGCTTGTTTGGACCAGTCCCTATGACTGATATCCTTGGCAGAGTGATATACTCTTTAAGAACGGCTGTCGACCATGGCCCAGTGGAGAACAGCCGAATGGCCATGAACCAGGATTCACCAGTTCTGGCAGTAGAGCTTGATGTGGAAGAGATGGCGAAGAATAATAAAGTGTAGATAATTAGTGCTTTTGACGTGCTGTGGTGTAACTTTTCCCTTCGATGGATTTT GTTATTCGAGAGATTAGTTGCTTCAAGTAGAACATTATTCTGAACTTGTTCACTATTTACTCGTGGAGAAGTCAATAATCATAAGAATAACCAT                      ]
[+] EMBL CF321780             [  TCCAATATAAATCGCAGCGTTCCCCGTCCCTCTCTCTCCTTTCCTCCTCCCTCCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCGCCTCCTCTTTGTTTCTCCTCTTAGGGGCTAGGGCTTGGCTTTCGAGAGGCAGCACCGCCGCCGGGGCAATCGAGCAGGCGGAGGGGAGGAGCTAATCAAATCAAGTCAAATCGAATCAAATCAAATTCAAATTCAAATTCGACTAGGGCAGCAGGAGGAGGATGGTTTCCCTGTCGACGTGGTTTCGCTACGCCGCGCACAAGTTCGAGTACTCCATCTCCCTCTCATGGAAGAAGTATAACGTTGGCCAGATCAACAGCACCCAGTTAACCGATGCCGTCTGGAAGAACTTCTTCCAAGGCAAGCTCACCTACATGCATTGGAACAAGGGGGGAGAAGCCATGGCCCCCATCGAATCTACTACGGGAGGAACCCTCCTTGTTAGAAAGCTCGTCAATTTGTCTCCAACACAAGTCTTTGTTGGTG ATGTTGTCTTACTAAAAGACCCAGAGAAATCTGATGATTTAATCGTTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CF332871             [           AATCGCAGCGTTCCCCGTCCCTCTCTCTCCTTTCCTCCTCCCTCCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCGCCTCCTCTTTGTTTCTCCTCTTAGGGGCTAGGGCTTGGCTTTCGAGAGGCAGCACCGCCGCCGGGGCAATCGAGCAGGCGGAGGGGAGGAGCTAATCAAATCAAGTCAAATCGAATCAAATCAAATTCAAATTCAAATTCGACTAGGGCAGCAGGAGGAGGATGGTTTCCCTGTCGACGTGGTTTCGCTACGCCGCGCACAAGTTCGAGTACTCCATCTCCCTCTCATGGAAGAAGTATAACGTTGGCCAGATCAACAGCACCCAGTTAACCGATGCCGTCTGGAAGAACTTCTTCCAAGGCAAGCTCACCTACATGCATTGGAACAAGGGGGGAGAAGCCATGGCCCCCATCGAATCTACTACGGGAGGAACCCTCCTTGTTAGAAAGCTCGTCAATTTGTCTCCAACACAAGTCTTTGTTGGTGAATGTTGTCTTACTAAAAGACCCAGAGAAATCTGATGATTTAATCGTTCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CF321758             [                                             CTCCTCCCTCCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCGCCTCCTCTTTGTTTCTCCTCTTAGGGGCTAGGGCTTGGCTTTCGAGAGGCAGCACCGCCGCCGGGGCAATCGAGCAGGCGGAGGGGAGGAGCTAATCAAATCAAGTCAAATCGAATCAAATCAAATTCAAATTCAAATTCGACTAGGGCAGCAGGAGGAGGATGGTTTCCCTGTCGACGTGGTTTCGCTACGCCGCGCACAAGTTCGAGTACTCCATCTCCCTCTCATGGAAGAAGTATAACGTTGGCCAGATCAACAGCACCCAGTTAACCGATGCCGTCTGGAAGAACTTCTTCCAAGGCAAGCTCACCTACATGCATTGGAACAAGGGGGGAGAAGCCATGGCCCCCATCGAATCTACTACGGGAGGAACCCTCCTTGTTAGAAAGCTCGTCAATTTGTCTCCAACACAAGTCTTTGTTGGTG ATGTTGTCTTACTAAAAGACCCAGAGAAATCTGATGATTTAATCGTTCGAC GATTGGCTGCCCTAGAAGGTTATGAGATGGTCTCTAATGATGAGAAGGATGAGCCGTTTGTACTTGACAAGGATCAATGGCTGGGTTCTGGCAGACAACCAATCACTAAAGCCAAAGGAAGCTAGGGATAGCCGCTTGTTTGGACCAGTCCCTATGACTGAT                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CF279981             [                                             CTCCTCCCTCCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCGCCTCCTCTTTGTTTCTCCTCTTAGGGGCTAGGGCTTGGCTTTCGAGAGGCAGCACCGCCGCCGGGGCAATCGAGCAGGCGGAGGGGAGGAGCTAATCAAATCAAGTCAAATCGAATCAAATCAAATTCAAATTCAAATTCGACTAGGGCAGCAGGAGGAGGATGGTTTCCCTGTCGACGTGGTTTCGCTACGCCGCGCACAAGTTCGAGTACTCCATCTCCCTCTCATGGAAGAAGTATAACGTTGGCCAGATCAACAGCACCCAGTTAACCGATGCCGTCTGGAAGAACTTCTTCCAAGGCAAGCTCACCTACATGCATTGGAACAAGGGGGGAGAAGCCATGGCCCCCATCGAATCTACTACGGGAGGAACCCTCCTTGTTAGAAAGCTCGTCAATTTGTCTCCAACACAAGTCTTTGTTGGTGAATGTTGTCTTACTAAAAGACCCAGAGAAATCTGATGATTTAATCGTTCGAC GA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CF321781             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATTTGTCTCCAACACAAGTCTTTGTTGGTG ATGTTGTCTTACTAAAAGACCCAGAGAAATCTGATGATTTAATCGTTCGAC GATTGGCTGCCCTAGAAGGTTATGAGATGGTCTCTAATGATGAGAAGGATGAGCCGTTTGTACTTGACAAGGATCAAT GCTGGGTTCTGGCAGACAACCAATCACTAAAGCCAAAGGAAGCTAGGGATAGCCGCTTGTTTGGACCAGTCCCTATGACTGATATCCTTGGCAGAGTGATATACTCTTTAAGAACGGCTGTCGACCATGGCCCAGTGGAGAACAGCCGAATGGCCATGAACCAGGATTCACCAGTTCTGGCAGTAGAGCTTGATGTGGAAGAGATGGCGAAGAATAATAAAGTGTAGATAATTAGAGAATTTGACGTGCTGTGGTGTAACTTTTCCCTTCGATGGATTTT GTTATTCGAGAGATTAGTTGCTTCAAGTAGAACATTATTCTGAACTTGTTCACTATTTACTCGTGGAGAAGTCAATAATCATAAGAATAACCATACGGGTTGCTAAAAAAAAAA  ]
[+] EMBL BI806548             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       cTTGTTGGT  ATCT  TC TANTGATAG CCCCGGGAAATCTGATGATTTAATCGTTCGACGGATT GCT  CCTAGAAGGTTATGAGATGGTCTCTAATGATGAGAAGGATGA CC TTTGTAC TGACAAGGATC AT GCTGGGTTCT GCAGACAACC ATCACTAAAGCCCAAGGAAGCTAGGGATA CCGCTTGTTTGGACCAGTCCCTATGACTGATATCCTTGGCAGAGTGATATACTCTTTAAGAACGGCTGTCGACCATGGCCCAGTGGAGAACAGCCGAATGGCCATGAACCAGGATTCACCAGTTCT GCAGTAGAGCTTGATGTGGAAGAGATGGCGAAGAATAATAAAGTGTAGATAATTAGTGCTTTTGACGTGCTGTGGTGTAACTTTTCCCTTCGATGGATTTTNCCTATTCGAGAGATTAGTTGCTTCAAGTAGAACATTATTCTGAACTTGTTCACTATTTACTCGTGGAGAAGTCAATAATCATAAGAATAACCATACGGGTTGCTAAAAAAAAAA  ]
[-] EMBL CF279982             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AAGGAAGCTAGGGATAGCCGCTTGTTTGGACCAGTCCCTATGACTGATATCCTTGGCAGAGTGATATACTCTTTAAGAACGGCTGTCGACCATGGCCCAGTGGAGAACAGCCGAATGGCCATGAACCAGGATTCACCAGTTCTGGCAGTAGAGAAAGATGTGGAAGAGATGGCGAAAAATAATAAAGTGTAGATAAAAAAAGCTTTTGACGTGCTGTGGTGTAACTTTTCCCTTCGATGGATTTT GTTATTCGAGAGATTAGTTGCTTCAAGTAGAACATTATTCTGAACTTGTTCACTATTTACTCGTGGAGAAGTCAATAATCATAAGAATAACCATACGGGTTGCTAAAAAAA     ]
[+] EMBL AU064229             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGATAGCCGCTTGTTTGGACCAGTCCCTATGACTGATATCCTTGGCAGAGTGATATACTCTTTAAGAACGGCTGTCGACCATGGCCCAGTGGAGAACAGCCGAATGGCCATGAACCAGGATTCACCAGTTCTGGCAGTAGAGCTTGATGTGGAAGAGATGGCGAAGAATAATAAAGTGTAGATAATTAGTGCTTTTGACGTGCTGTGGTGTAACTTTTCCCTTCGATGGATTTT GTTATTCGAGAGATTAGTTGCTTCAAGTAGAACATTATTCTGAACTTGTTCACTATTTACTCGTGGAGAAGTCAATAATCATAAGAATAACCATACGGGTTGCTAAAttttgatca]


>consensus_13587#0 AATCCAATATAAATCGCAGCGTTCCCCGTCCCTCTCTCTCCTTTCCTCCTCCCTCCGCCG CCGCCGCCGCCGCCGCCGCCGCCTCCGCCTCCTCTTTGTTTCTCCTCTTAGGGGCTAGGG CTTGGCTTTCGAGAGGCAGCACCGCCGCCGGGGCAATCGAGCAGGCGGAGGGGAGGAGCT AATCAAATCAAGTCAAATCGAATCAAATCAAATTCAAATTCAAATTCGACTAGGGCAGCA GGAGGAGGATGGTTTCCCTGTCGACGTGGTTTCGCTACGCCGCGCACAAGTTCGAGTACT CCATCTCCCTCTCATGGAAGAAGTATAACGTTGGCCAGATCAACAGCACCCAGTTAACCG ATGCCGTCTGGAAGAACTTCTTCCAAGGCAAGCTCACCTACATGCATTGGAACAAGGGGG GAGAAGCCATGGCCCCCATCGAATCTACTACGGGAGGAACCCTCCTTGTTAGAAAGCTCG TCAATTTGTCTCCAACACAAGTCTTTGTTGGTGATGTTGTCTTACTAAAAGACCCAGAGA AATCTGATGATTTAATCGTTCGACGATTGGCTGCCCTAGAAGGTTATGAGATGGTCTCTA ATGATGAGAAGGATGAGCCGTTTGTACTTGACAAGGATCAATGCTGGGTTCTGGCAGACA ACCAATCACTAAAGCCAAAGGAAGCTAGGGATAGCCGCTTGTTTGGACCAGTCCCTATGA CTGATATCCTTGGCAGAGTGATATACTCTTTAAGAACGGCTGTCGACCATGGCCCAGTGG AGAACAGCCGAATGGCCATGAACCAGGATTCACCAGTTCTGGCAGTAGAGCTTGATGTGG AAGAGATGGCGAAGAATAATAAAGTGTAGATAATTAGTGCTTTTGACGTGCTGTGGTGTA ACTTTTCCCTTCGATGGATTTTGTTATTCGAGAGATTAGTTGCTTCAAGTAGAACATTAT TCTGAACTTGTTCACTATTTACTCGTGGAGAAGTCAATAATCATAAGAATAACCATACGG GTTGCTAAAAAAAAAACA



consensusID : consensus_13587#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 659
fasta sequence
                              [GTTTGGGGGAGGGGCCCCCCCCCTCTCCCTTTTAATAAAACCAAAAAAAAAAAATTGGGGGGGTCTCCCCCCCTCTTTTTTTGTTGGGCCCCCCCCCCCCCCCCCCCTTTAGGGGGGGAAAAAAATCCCCCCCGGGGGGGAAAGAGAGTATTATTTTTCTTTTTATAAATAAAAAGGGGGGTGTTTTGCCCCCCCATGGGGGGGCCCCCCGGTGGGGGGAAAAACCCCCCCCCCCGGAAAAAAGGGGGGCCCCTCCTCTTTAAANCCCCCCGGGGGGTTTTTTTCCCCCCCCCTTTGNNGNNGGCNCCCCGCGCCCGCCCGCGGCGGCGCGCCGGGCGGCGCGCGCGGCNCCCCGCCCCCCCCCCCCCCGCCCGCGGGGGCGGGGCGGGGGGNCCGGCCCCCCCCCCCGGGGGGGGGGNNNNNNNNNNNNAGAGCTGGATCGTGGAAAGAAGATGGGGTCGCAAGNNANATNACATNAAAGTGTAGATAATTAGTGCTTTTGACGTGCTGTGGTGTAACTTTTCCCTTCGATGGATTTTGTTATTCGAGAGATTAGTTGCTTCAAGTAGAACATTATTCTGAACTTGTTCACTATTTACTCGTGGAGAAGTCAATAATCATAAGAATAACCATACGGGTTGCTAAAAAAAAAAAAAAAA]

[-] EMBL CA760503             [GTTTGGGGGAGGGGCCCCCCCCCTCTCCCTTTTAATAAAACCAAAAAAAAAAAATTGGGGGGGTCTCCCCCCCTCTTTTTTTGTTGGGCCCCCCCCCCCCCCCCCCCTTTAGGGGGGGAAAAAAATCCCCCCCGGGGGGGAAAGAGAGTATTATTTTTCTTTTTATAAATAAAAAGGGGGGTGTTTTGCCCCCCCATGGGGGGGCCCCCCGGTGGGGGGAAAAACCCCCCCCCCCGGAAAAAAGGGGGGCCCCTCCTCTTTAAANCCCCCCGGGGGGTTTTTTTCCCCCCCCCTTTGNNGNNGGCNCCCCGCGCCCGCCCGCGGCGGCGCGCCGGGCGGCGCGCGCGGCNCCCCGCCCCCCCCCCCCCCGCCCGCGGGGGCGGGGCGGGGGGNCCGGCCCCCCCCCCCGGGGGGGGGGNNNNNNNNNNNNAGAGCTGGATCGTGGAAAGAAGATGGGGTCGCAAGNNANATNACATNAAAGTGTAGATAATTAGTGCTTTTGACGTGCTGTGGTGTAACTTTTCCCTTCGATGGATTTTGTTATTCGAGAGATTAGTTGCTTCAAGTAGAACATTATTCTGAACTTGTTCACTATTTACTCGTGGAGAAGTCAATAATCATAAGAATAACCATACGGGTTGCTAAAAAAAAAAAAAAAA]


>consensus_13587#1 GTTTGGGGGAGGGGCCCCCCCCCTCTCCCTTTTAATAAAACCAAAAAAAAAAAATTGGGG GGGTCTCCCCCCCTCTTTTTTTGTTGGGCCCCCCCCCCCCCCCCCCCTTTAGGGGGGGAA AAAAATCCCCCCCGGGGGGGAAAGAGAGTATTATTTTTCTTTTTATAAATAAAAAGGGGG GTGTTTTGCCCCCCCATGGGGGGGCCCCCCGGTGGGGGGAAAAACCCCCCCCCCCGGAAA AAAGGGGGGCCCCTCCTCTTTAAANCCCCCCGGGGGGTTTTTTTCCCCCCCCCTTTGNNG NNGGCNCCCCGCGCCCGCCCGCGGCGGCGCGCCGGGCGGCGCGCGCGGCNCCCCGCCCCC CCCCCCCCCGCCCGCGGGGGCGGGGCGGGGGGNCCGGCCCCCCCCCCCGGGGGGGGGGNN NNNNNNNNNNAGAGCTGGATCGTGGAAAGAAGATGGGGTCGCAAGNNANATNACATNAAA GTGTAGATAATTAGTGCTTTTGACGTGCTGTGGTGTAACTTTTCCCTTCGATGGATTTTG TTATTCGAGAGATTAGTTGCTTCAAGTAGAACATTATTCTGAACTTGTTCACTATTTACT CGTGGAGAAGTCAATAATCATAAGAATAACCATACGGGTTGCTAAAAAAAAAAAAAAAA



consensusID : consensus_13587#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence
                              [GGAATTCGGCGCGAGGGCGGCGCCGCCGCCGCCGCCGCCGCCGCCTCCGCCTCCTCTTTGTGGGTGGGTCTTAGGGGCTAGGGCTTGGCTTTCGAGAGGCAGCACCGCCGCCGGGGCAATCGAGCAGGCGGAGGGGAGGAGCTAATCAAATCAAGTCAAATCGAATCAAATCAAATTCAAATTCAAATTCGACTAGGGCAGCAGGAGGAGGATGGTTTCCCTGTCGACGTGGTTTCGCTACGCCGCGCACAAGTTCGAGTACTCCATCTCCCTCTCATGGAAGAAGTATAACCGTTGGCCAGATCAACAGCACCCAGTTAACCGATGCCGTCTGGAAGAACTTCTTTCAAGGCGAAGCTCACCTACATTGCATTGGAACAAGGGGGGAGAAGCCATGGCCCCCATCGAATCTACTACGGGAGGAACCCTNCTTGTTAGAAAGCTCGTCAATTTGTCTCCAACACAAGTCTTTGTTGGTGATGTTTGTCTTACTAAAAAGACCCCCAGAAATCTGGTGATTTAAATCGGTCCGACGATTGGGCTGCCCTAGAAAGGTTTATGAGGATGGTCTTTATTGATTAAGAGG]

[+] EMBL BE039231             [GGAATTCGGCGCGAGGGCGGCGCCGCCGCCGCCGCCGCCGCCGCCTCCGCCTCCTCTTTGTGGGTGGGTCTTAGGGGCTAGGGCTTGGCTTTCGAGAGGCAGCACCGCCGCCGGGGCAATCGAGCAGGCGGAGGGGAGGAGCTAATCAAATCAAGTCAAATCGAATCAAATCAAATTCAAATTCAAATTCGACTAGGGCAGCAGGAGGAGGATGGTTTCCCTGTCGACGTGGTTTCGCTACGCCGCGCACAAGTTCGAGTACTCCATCTCCCTCTCATGGAAGAAGTATAACCGTTGGCCAGATCAACAGCACCCAGTTAACCGATGCCGTCTGGAAGAACTTCTTTCAAGGCGAAGCTCACCTACATTGCATTGGAACAAGGGGGGAGAAGCCATGGCCCCCATCGAATCTACTACGGGAGGAACCCTNCTTGTTAGAAAGCTCGTCAATTTGTCTCCAACACAAGTCTTTGTTGGTGATGTTTGTCTTACTAAAAAGACCCCCAGAAATCTGGTGATTTAAATCGGTCCGACGATTGGGCTGCCCTAGAAAGGTTTATGAGGATGGTCTTTATTGATTAAGAGG]


>consensus_13587#2 GGAATTCGGCGCGAGGGCGGCGCCGCCGCCGCCGCCGCCGCCGCCTCCGCCTCCTCTTTG TGGGTGGGTCTTAGGGGCTAGGGCTTGGCTTTCGAGAGGCAGCACCGCCGCCGGGGCAAT CGAGCAGGCGGAGGGGAGGAGCTAATCAAATCAAGTCAAATCGAATCAAATCAAATTCAA ATTCAAATTCGACTAGGGCAGCAGGAGGAGGATGGTTTCCCTGTCGACGTGGTTTCGCTA CGCCGCGCACAAGTTCGAGTACTCCATCTCCCTCTCATGGAAGAAGTATAACCGTTGGCC AGATCAACAGCACCCAGTTAACCGATGCCGTCTGGAAGAACTTCTTTCAAGGCGAAGCTC ACCTACATTGCATTGGAACAAGGGGGGAGAAGCCATGGCCCCCATCGAATCTACTACGGG AGGAACCCTNCTTGTTAGAAAGCTCGTCAATTTGTCTCCAACACAAGTCTTTGTTGGTGA TGTTTGTCTTACTAAAAAGACCCCCAGAAATCTGGTGATTTAAATCGGTCCGACGATTGG GCTGCCCTAGAAAGGTTTATGAGGATGGTCTTTATTGATTAAGAGG



consensusID : consensus_13587#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence
                              [AGCGTAGAGAGGTTAGTGTTTTACCTAGATATCTTCTCATTGTTGCAACAAAAAAGTGAGATTTGGGCACATTCTCTTAGATGCACACATCGTTGTGGTGTGGTTTAACAAATATGTGTATTGAATTTGAGCACATACCTTCTTTATGTACTTCACATAAGCTCTTTTGGTAACAGGAAGCTAGGGATAGCCGCTTGTTTGGACCAGTCCCTATGACTGATATCCTTGGCAGAGTGATATACTCTTTAAGAACGGCTGTCGACCATGGCCCAGTGGAGAACAGCCGAATGGCCATGAACCAGGATTCACCAGTTCTGGCAGTAGAGCTTGATGTGGAAGAGATGGCGAAGAATAATAAAGTGTAGATAATTAGTGCTTTTGACGTGCTGTGGTGTAACTTTTCCCTTCGATGGATTTTGTTATTCGAGAGATTAGTTGCTTCAAGTAGAACATTATTCTGAACTTGTTCACTATTTAAAAAAA]

[-] EMBL CF332872             [AGCGTAGAGAGGTTAGTGTTTTACCTAGATATCTTCTCATTGTTGCAACAAAAAAGTGAGATTTGGGCACATTCTCTTAGATGCACACATCGTTGTGGTGTGGTTTAACAAATATGTGTATTGAATTTGAGCACATACCTTCTTTATGTACTTCACATAAGCTCTTTTGGTAACAGGAAGCTAGGGATAGCCGCTTGTTTGGACCAGTCCCTATGACTGATATCCTTGGCAGAGTGATATACTCTTTAAGAACGGCTGTCGACCATGGCCCAGTGGAGAACAGCCGAATGGCCATGAACCAGGATTCACCAGTTCTGGCAGTAGAGCTTGATGTGGAAGAGATGGCGAAGAATAATAAAGTGTAGATAATTAGTGCTTTTGACGTGCTGTGGTGTAACTTTTCCCTTCGATGGATTTTGTTATTCGAGAGATTAGTTGCTTCAAGTAGAACATTATTCTGAACTTGTTCACTATTTAAAAAAA]


>consensus_13587#3 AGCGTAGAGAGGTTAGTGTTTTACCTAGATATCTTCTCATTGTTGCAACAAAAAAGTGAG ATTTGGGCACATTCTCTTAGATGCACACATCGTTGTGGTGTGGTTTAACAAATATGTGTA TTGAATTTGAGCACATACCTTCTTTATGTACTTCACATAAGCTCTTTTGGTAACAGGAAG CTAGGGATAGCCGCTTGTTTGGACCAGTCCCTATGACTGATATCCTTGGCAGAGTGATAT ACTCTTTAAGAACGGCTGTCGACCATGGCCCAGTGGAGAACAGCCGAATGGCCATGAACC AGGATTCACCAGTTCTGGCAGTAGAGCTTGATGTGGAAGAGATGGCGAAGAATAATAAAG TGTAGATAATTAGTGCTTTTGACGTGCTGTGGTGTAACTTTTCCCTTCGATGGATTTTGT TATTCGAGAGATTAGTTGCTTCAAGTAGAACATTATTCTGAACTTGTTCACTATTTAAAA AAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13587#1      GTTTGGGGGAGGGGCCCCCCCCCTCTCCCTTTTAATAAAACCAAAAAAAAAAAATTGGGG 60
consensus_13587#3      ------------------------------------------------------------
consensus_13587#0      -----------AATCCAATATAAATCGCAGCGTTCCCCGTCCCTCTCTCTCCTTTCCTCC 49
consensus_13587#2      -------------------------------------------------GGAATTCGGCG 11
                                                                                   

consensus_13587#1      GGGTCTCCCCCCCTCTTTTTTTGTTGGGCCCCCCCCCCCCCCCCCCCTTTAGGGGGGGAA 120
consensus_13587#3      -----------------------------------------------------AGCGTAG 7
consensus_13587#0      TCCCTCCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCGCCTCCTCTTTGTTTCTCC-TCT 108
consensus_13587#2      CGAGGGCGGCGCCGCCGCCGCCGCCGCCGCCGCCTCCGCCTCCTCTTTGTGGGTGGGTCT 71
                                                                                   

consensus_13587#1      AAAAATCCCCCCCGGGGGGGAAAGAGAGTATTATTTTTCTTTTTATAAATAAAAAGGGGG 180
consensus_13587#3      AGAGGTT------AGTGTTTTACCTAGATATC-TTCTCATTGTTGCAACAAAAAAGTGAG 60
consensus_13587#0      TAGGGGCTAGGGCTTGGCTTTCGAGAGGCAGCACCGCCGCCGGGGCAATCGAGCAGGCGG 168
consensus_13587#2      TAGGGGCTAGGGCTTGGCTTTCGAGAGGCAGCACCGCCGCCGGGGCAATCGAGCAGGCGG 131
                                       *            *                **   *  **   *

consensus_13587#1      GTGTTT-TGCCCCCCCATGGGGGGGCCCCCCGG-TGGGG---GGAAAAACCCCCCCCCCC 235
consensus_13587#3      ATTTGGGCACATTCTCTTAGATGCACACATCGT-TGTGGTGTGGTTTAACAAATATGTGT 119
consensus_13587#0      AGGGGAGGAGCTAATCAAATCAAGTCAAATCGAATCAAATCAAATTCAAATTCAAATTCG 228
consensus_13587#2      AGGGGAGGAGCTAATCAAATCAAGTCAAATCGAATCAAATCAAATTCAAATTCAAATTCG 191
                                      *         *    **  *            **           

consensus_13587#1      GGAAAAAAGGGGGGCCCCTCCTCTTTAAANCCCCCCGGGGGGTTTTTTTCCCCCCCCCTT 295
consensus_13587#3      ATTGAATTTGAGCACATACCTTCTTTATGTACTTCACATAAGCTCTTTTGGTAACAGGAA 179
consensus_13587#0      ACTAGGGCAGCAGGAGGAGGATGGTTTCCCTGTCGACGTGGTTTCGCTACGCCGCGCACA 288
consensus_13587#2      ACTAGGGCAGCAGGAGGAGGATGGTTTCCCTGTCGACGTGGTTTCGCTACGCCGCGCACA 251
                                *           *  **                 *   *      *     

consensus_13587#1      TGNNGNNGGCNCCCCGCGCCCGCCCGCGGCGG---CGCGCCGGGCGGCGCGCGCGGCNCC 352
consensus_13587#3      GCTAGGGATAGCCGCTTGTTTGGACCAGTCCC---TATGACTGATATCCTTGGCAGAGTG 236
consensus_13587#0      AGTTCGAGTACTCCATCTCCCTCTCATGGAAGAAGTATAAC-GTTGGCCAGATCAACAGC 347
consensus_13587#2      AGTTCGAGTACTCCATCTCCCTCTCATGGAAGAAGTATAACCGTTGGCCAGATCAACAGC 311
                                   *           *  *            * *    *     *      

consensus_13587#1      CCGCCCCCC-CCCCCCCCGCCCG-CGGGGGCGGGGCGG-GGGGNCCGGCCCCCCCCCCCG 409
consensus_13587#3      ATATACTCT-TTAAGAACGGCTGTCGACCATGGCCCAGTGGAGAACAGCCGAATGGCCAT 295
consensus_13587#0      ACCCAGTTAACCGATGCCGTCTG--GAAGAACTTCTTCCAAGGC-AAGCTCACCTACAT- 403
consensus_13587#2      ACCCAGTTAACCGATGCCGTCTG--GAAGAACTTCTTTCAAGGCGAAGCTCACCTACATT 369
                                        ** * *  *                *    **       *   

consensus_13587#1      GGGGGGGGGNNNNNNNNNNNNAGAGCTGGATCGTGGAAAGAAGATGGGGTCGCAAGNNAN 469
consensus_13587#3      GAACCAGGATTCACCAGTTCTGGCAGTAGAGCTTG--ATGTGGAAGAGATGGCGAAGAAT 353
consensus_13587#0      GCATTGGAACAAGGGGGGAGAAGCCATGGCCCCCATCGAATCTACTACGGGAGGAACCCT 463
consensus_13587#2      GCATTGGAACAAGGGGGGAGAAGCCATGGCCCCCATCGAATCTACTACGGGAGGAACCCT 429
                       *     *               *   * *  *           *          *     

consensus_13587#1      ATNACATNAAAGTGTAGATAATTAGTGCTTTTGACGTG-CTGTGGTGTAACTTTTCCCTT 528
consensus_13587#3      AATA-----AAGTGTAGATAATTAGTGCTTTTGACGTG-CTGTGGTGTAACTTTTCCCTT 407
consensus_13587#0      CCTTGTTAGAAAGCTCGTCAATTTGTCTCCAACACAAGTCTTTGTTGGTGATGTT-GTCT 522
consensus_13587#2      NCTTGTTAGAAAGCTCGTCAATTTGTCTCCAACACAAGTCTTTGTTGGTGATGTTTGTCT 489
                                **   * *  **** **       **  * ** ** **    * **    *

consensus_13587#1      CGATGGATTTTGTTATTCGAGAGATTAGTTGCTTCAAGTAGAACATTATTCTGAACTTGT 588
consensus_13587#3      CGATGGATTTTGTTATTCGAGAGATTAGTTGCTTCAAGTAGAACATTATTCTGAACTTGT 467
consensus_13587#0      TACTAAA---A-GACCCAGAGAAATCTGATGATTTAATC--GTTCGACGATTGG-CTGCC 575
consensus_13587#2      TACTAAA---AAGACCCCCAGAAATCTGGTGATTTAAATCGGTCCGACGATTGGGCTGCC 546
                          *  *            *** **  * ** ** **              **  **   

consensus_13587#1      TCACTATTTACTCGTGGAGAAGTCAATAATCATAAGAATAACCATACGGGTTGCTAAAAA 648
consensus_13587#3      TCACTATTTA-----AAAAAA--------------------------------------- 483
consensus_13587#0      CTAGAAGG--TTATGAG-ATGGTCTCTAATGATGAGAAGGATGAGCCGTTTGTACTTGAC 632
consensus_13587#2      CTAGAAAGGTTTATGAGGATGGTCTTTATTGATTAAGAGG-------------------- 586
                         *  *                                                      

consensus_13587#1      AAAAAAAAAAA------------------------------------------------- 659
consensus_13587#3      ------------------------------------------------------------
consensus_13587#0      AAGGATCAATGCTGGGTTCTGGCAGACAACCAATCACTAAAGCCAAAGGAAGCTAGGGAT 692
consensus_13587#2      ------------------------------------------------------------
                                                                                   

consensus_13587#1      ------------------------------------------------------------
consensus_13587#3      ------------------------------------------------------------
consensus_13587#0      AGCCGCTTGTTTGGACCAGTCCCTATGACTGATATCCTTGGCAGAGTGATATACTCTTTA 752
consensus_13587#2      ------------------------------------------------------------
                                                                                   

consensus_13587#1      ------------------------------------------------------------
consensus_13587#3      ------------------------------------------------------------
consensus_13587#0      AGAACGGCTGTCGACCATGGCCCAGTGGAGAACAGCCGAATGGCCATGAACCAGGATTCA 812
consensus_13587#2      ------------------------------------------------------------
                                                                                   

consensus_13587#1      ------------------------------------------------------------
consensus_13587#3      ------------------------------------------------------------
consensus_13587#0      CCAGTTCTGGCAGTAGAGCTTGATGTGGAAGAGATGGCGAAGAATAATAAAGTGTAGATA 872
consensus_13587#2      ------------------------------------------------------------
                                                                                   

consensus_13587#1      ------------------------------------------------------------
consensus_13587#3      ------------------------------------------------------------
consensus_13587#0      ATTAGTGCTTTTGACGTGCTGTGGTGTAACTTTTCCCTTCGATGGATTTTGTTATTCGAG 932
consensus_13587#2      ------------------------------------------------------------
                                                                                   

consensus_13587#1      ------------------------------------------------------------
consensus_13587#3      ------------------------------------------------------------
consensus_13587#0      AGATTAGTTGCTTCAAGTAGAACATTATTCTGAACTTGTTCACTATTTACTCGTGGAGAA 992
consensus_13587#2      ------------------------------------------------------------
                                                                                   

consensus_13587#1      ----------------------------------------------
consensus_13587#3      ----------------------------------------------
consensus_13587#0      GTCAATAATCATAAGAATAACCATACGGGTTGCTAAAAAAAAAACA 1038
consensus_13587#2      ----------------------------------------------
                                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)