These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13594#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1993 fasta sequence [TCCCCCCTCCCCTGCTTTCCCTCGCGCACCGACCCCACTCGGATCCTCTCCTCCCCTCCTCACTGCCTCTCTCCCGTCCACGAGCGGTTGGTCGATCGATCGATCGATCGGCGCGGTCCTTCGCCAGCCATGGCGGCGGCGGCGATGGCGCCCTCGCCTCCGGAGCCGGCGTTGCCGCGGGAGCTCAGCCTGGGGGACCTCAGGGCGGTGTCCATGCTCGGCCGGGGCGCCAAGGGCGTCGTGTTCCACGTCGTGCCCGCGGCGGC-GGG-GGAGGAGGAGGCCTCCATGGCGCTCAAGGCGGTCTCGCGGGAGGCGGCGCGGCACAAGAAGAACGGGAGCGGCGGCGAGGACGGGCACCGGCGGATC-TGGTTCGAGCGGGACGTGCTCATGTCGCTGCGACACCCGCTGCTCCCCTCCCTCCGCGGCGTCCTCGCCACCGACGCCGTCGTCGGGTTCGCCATCGACCGCTGCGGCGGCGGAGACCTCAACTCGCTCCGGCGCCGCCAGACCGAGAAGATGTTCTCCGACTCCGTCATCCGCTTCTACGCCGCGGAGTTGGTGCTGGCGCTCGACTATCTGCACAGCCTCGGCATCGTGTACCGCGACCTCAAGCCGGAGAACGTCCTGATACAGGACAGCGGCCACATCATGCTCGTCGACTTCGACCTCTCCACGAGGCTCCCGACGCCGCCGCCGCCACCGGAGGAGCAGGACGCAACGATTGCTGATTCCATGCCGGAGCCTCCGCCCAGTTCACCGTCCCCGAACCGCGCGAAGGGCAAGAGGCAACCGGGGGCGGCCTCGTGCTTCCCGTTCTGTTCGGTCGGCGCCACGAAGCCGGCCGCGTCGGCGGACTCGCCGTCGCCAACGTCCACCTCGCGCACGGCCTCGGCGTCGTCCTCGTCCTCATCCTCGACGGCCACCACCGCGTCGTCCTCCACCGCCGCTGGCGTGCGGTCGCCAGCGAAGTCGAACTCGTTCGTGGGCACGGAGGACTACGTGGCGCCGGAGATCATCGCCGGCAGCGGGCACGACTTCTCCGTGGACTGGTGGGGCCTGGG-CGTGGTGCTCTACGAGATGCTCTACGGCCGCACGCCGTTCCGGGGGCTGAACAGGAAGGAGACGTTCTACCGCGTCCTCTCCAAGCAGCCGGAGCTCGTCGGCGAGAAG-ACGCCGCTGCGCGACCTCATCGCCCGCCTCCTGGAGAAGGACCCCGAGAAGCGCATCGGCGCGCGCGGGATCAAGGCGCACCCGTTCTTCAACGGCGTCGACTGGGACCGCATCCTCCGCGTGGCGCGCCCGCCGTTCATCCCGCCCCCGCCGGAGGACGAGGACGAGGCCGGCGAGGTGCTCGACGTCGAGAAGGTCGTCAACGAGGTGTTCGCGGCCAATGACGGCGGGGCCGCAGCGGGTGTGGTGGAGAAGCCTTCGCCGGAGGCAGGTGGAACTCTGGCCGTCGGCGATGGCGAGCAGAGGAGAGATCCGTCCAAAGAAGGCGATTTCTCCGTATTTTTCTGAGCGTATTTATTGAGTTCTTTTTTAGCGTTCTCTCTCTTAAAAATGGAAAATTACATAGCTATTTTGGTTTTTTCTATGGACTAGAATTATTATGGGGGTCTCTATTAGTAATAGACATAATTAAGACAAAGTACGGCGCGGTGGAGTACATAAATCGACTTTGCTCTTGTGTTTAATGGAGTACAGTCTGTATAGTATTTTTCCCCTTTCCCTTTTATTTTCTTCTTTGTTGGATACATTTCCCCGTGCAACGATGCAAGCTAGGGGATTACTGAAGAGTGTACATAAGGAATGATGAACAGCAAAATTGGCCTAATGTTGTGTCCATCCATGTGTTCCATTTCGCTTTGGGTAGCCATTGATGTTAATACCTGTTACTTCCTTTCAGTGGGAGTAATAGAAATGGTCACGGTTTTGTACATTTTTCTGCAACATTCTCTCAAAGTAGTAAATGCTTTGAAGTGCCCTTGCGCCA] [+] EMBL CB672200 [TCCCCCCTCCCCTGCTTTCCCTCGCGCACCGACCCCACTCGGATCCTCTCCTCCCCTCCTCACTGCCTCTCTCCCGTCCACGAGCGGTTGGTCGATCGATCGATCGATCGGCGCGGTCCTTCGCCAGCCATGGCGGCGGCGGCGATGGCGCCCTCGCCTCCGGAGCCGGCGTTGCCGCGGGAGCTCAGCCTGGGGGACCTCAGGGCGGTGTCCATGCTCGGCCGGGGCGCCAAGGGCGTCGTGTTCCACGTCGTGCCCGCGGCGGC GGG GGAGGAGGAGGCCTCCATGGCGCTCAAGGCGGTCTCGCGGGAGGCGGCGCGGCACAAGAAGAACGGGAGCGGCGGCGAGGACGGGCACCGGCGGATC TGGTTCGAGCGGGACGTGCTCATGTCGCTGCGACACCCGCTGCTCCCCTCCCTCCGCGGCGTCCTCGCCACCGACGCCGTCGTCGGGTTCGCCATCGACCGCTGCGGCGGCGGAGACCTCAACTCGCTCCGGCGCCGCCAGACCGAGAAGATGTTCTCCGACTCCGTCATCCGCTTCTACGCCGCGGAGTTGGTGCTGGCGCTCGACTATCTGCACAGCCTCGGCATCGTGTACCGCGACCTCAAGCCGGAGAACGTCCTGATACAGGACAGCGGCCACATCATGCTCGTCGACTTCGACCTCTCCACGAGGCTCCCGACGCCGCCGCCGCCACCGGAGGAGCAGGACGCAACGATTGCTGATTCCATGCCGGAGCCTCCGCCCAGTTCACCGTCCCCGAACCGC ] [+] EMBL AK067266 [ CGACCCCACTCGGATCCTCTCCTCCCCTCCTCACTGCCTCTCTCCCGTCCACGAGCGGTTGGTCGATCGATCGATCGATCGGCGCGGTCCTTCGCCAGCCATGGCGGCGGCGGCGATGGCGCCCTCGCCTCCGGAGCCGGCGTTGCCGCGGGAGCTCAGCCTGGGGGACCTCAGGGCGGTGTCCATGCTCGGCCGGGGCGCCAAGGGCGTCGTGTTCCACGTCGTGCCCGCGGCGGCGGGG GGAGGAGGAGGCCTCCATGGCGCTCAAGGCGGTCTCGCGGGAGGCGGCGCGGCACAAGAAGAACGGGAGCGGCGGCGAGGACGGGCACCGGCGGATC TGGTTCGAGCGGGACGTGCTCATGTCGCTGCGACACCCGCTGCTCCCCTCCCTCCGCGGCGTCCTCGCCACCGACGCCGTCGTCGGGTTCGCCATCGACCGCTGCGGCGGCGGAGACCTCAACTCGCTCCGGCGCCGCCAGACCGAGAAGATGTTCTCCGACTCCGTCATCCGCTTCTACGCCGCGGAGTTGGTGCTGGCGCTCGACTATCTGCACAGCCTCGGCATCGTGTACCGCGACCTCAAGCCGGAGAACGTCCTGATACAGGACAGCGGCCACATCATGCTCGTCGACTTCGACCTCTCCACGAGGCTCCCGACGCCGCCGCCGCCACCGGAGGAGCAGGACGCAACGATTGCTGATTCCATGCCGGAGCCTCCGCCCAGTTCACCGTCCCCGAACCGCGCGAAGGGCAAGAGGCAACCGGGGGCGGCCTCGTGCTTCCCGTTCTGTTCGGTCGGCGCCACGAAGCCGGCCGCGTCGGCGGACTCGCCGTCGCCAACGTCCACCTCGCGCACGGCCTCGGCGTCGTCCTCGTCCTCATCCTCGACGGCCACCACCGCGTCGTCCTCCACCGCCGCTGGCGTGCGGTCGCCAGCGAAGTCGAACTCGTTCGTGGGCACGGAGGACTACGTGGCGCCGGAGATCATCGCCGGCAGCGGGCACGACTTCTCCGTGGACTGGTGGGGCCTGGG CGTGGTGCTCTACGAGATGCTCTACGGCCGCACGCCGTTCCGGGGGCTGAACAGGAAGGAGACGTTCTACCGCGTCCTCTCCAAGCAGCCGGAGCTCGTCGGCGAGAAG ACGCCGCTGCGCGACCTCATCGCCCGCCTCCTGGAGAAGGACCCCGAGAAGCGCATCGGCGCGCGCGGGATCAAGGCGCACCCGTTCTTCAACGGCGTCGACTGGGACCGCATCCTCCGCGTGGCGCGCCCGCCGTTCATCCCGCCCCCGCCGGAGGACGAGGACGAGGCCGGCGAGGTGCTCGACGTCGAGAAGGTCGTCAACGAGGTGTTCGCGGCCAATGACGGCGGGGCCGCAGCGGGTGTGGTGGAGAAGCCTTCGCCGGAGGCAGGTGGAACTCTGGCCGTCGGCGATGGCGAGCAGAGGAGAGATCCGTCCAAAGAAGGCGATTTCTCCGTATTTTTCTGAGCGTATTTATTGAGTTCTTTTTTAGCGTTCTCTCTCTTAAAAATGGAAAATTACATAGCTATTTTGGTTTTTTCTATGGACTAGAATTATTATGGGGGTCTCTATTAGTAATAGACATAATTAAGACAAAGTACGGCGCGGTGGAGTACATAAATCGACTTTGCTCTTGTGTTTAATGGAGTACAGTCTGTATAGTATTTTTCCCCTTTCCCTTTTATTTTCTTCTTTGTTGGATACATTTCCCCGTGCAACGATGCAAGCTAGGGGATTACTGAAGAGTGTACATAAGGAATGATGAACAGCAAAATTGGCCTAATGTTGTGTCCATCCATGTGTTCCATTTCGCTTTGGGTAGCCATTGATGTTAATACCTGTTACTTCCTTTCAGTGGGAGTAATAGAAATGGTCACGGTTTTGTACATTTTTCTGCAACATTCTCTCAAAGTAGTAAATGCTTTGAAGTGCCCTTGCGCCA] [+] EMBL AU064505 [ ACCCCACTCGGATCCTCTCCTCCCCTCCTCACTGCCTCTCTCCCGTCCACGAGCGGTTGGTCGATCGATCGATCGATCGGCGCGGTCCTTCGCCAGCCATGGCGGCGGCGGCGATGGCGCCCTCGNCTCCGGAGCCGGCGTTGCCGCGGGAGCTCAGCCTGGGGGACCTCAGGGCGGTGTCCATNCTCGGCCGGGGNGCCAAGGGCGTCGTGTTCCACGTCGTGCCCGCGGCGGC GGG GGAGGAGGAGGCCTCCATGGCGCTCAAGGCGGTCTCGCGGGAGGCGGCGCGGCACAAGAAGAACGGGAGCGGCGGCGAGGACGGG AACNGCGGATCTTTGTTCGAGCGGGACGTG ] [+] EMBL CB640530 [ ACTGCCTCTCTCCCGTCCACGAGCGGTTGGTCGATCGATCGATCGATCGGCGCGGTCCTTCGCCAGCCATGGCGGCGGCGGCGATGGCGCCCTCGCCTCCGGAGCCGGCGTTGCCGCGGGAGCTCAGCCTGGGGGACCTCNAGGCGGTGTCCATGCTCGGCCGGGGCGCCAAGGGCGTCGTGTTCCACGTCGTGCCCGCGGCGGC GGG GGAGGAGGAGGCCTCCATGGCGCTCAAGGCGGTCTCGCGGGAGGCGGCGCGGCACAAGAAGAACGGGAGCGGCGGCGAGGACGGGCACCGGCGGATC TGGTTCGAGCGGGACGTGCTCATGTCGCTGCGACACCCGCTGCTCCCCTCCCTCCGCGGCGTCCTCGCCAC ] [+] EMBL C93445 [ AGCGGTTGGTCGATCGATCGATCGATCGGCGCGGTCCTTCGCCAGCNATGGCGGCGGCGGCGATGGCGCCCTCGCNTCCGGAGCCGGCGTTGCCGCGGNAGCTCAGCCTGGGGGACCTCAGGGCGGTGTCCATGCTCGGCCGGGGNGCCAAGGGCGTCGTGTTCCACGTCGTGCCCGCGGCGGC GGGNGGAGGAGGAGGCCTCCATGGCGCTCAAGGCGGTCTCGCGGGAGGCGGCGCGGCACAAGAAGAACGGGAGCGGCGGCGAGGACGGGCACCGGCGGATC TGGTTCGAGCGGGACGTGCTCATGTCGCTGCNACAACCGCTGC ] [+] EMBL AK073224 [ GGGACGTGCTCATGTCGCTGCGACACCCGCTGCTCCCCTCCCTCCGCGGCGTCCTCGCCACCGACGCCGTCGTCGGGTTCGCCATCGACCGCTGCGGCGGCGGAGACCTCAACTCGCTCCGGCGCCGCCAGACCGAGAAGATGTTCTCCGACTCCGTCATCCGCTTCTACGCCGCGGAGTTGGTGCTGGCGCTCGACTATCTGCACAGCCTCGGCATCGTGTACCGCGACCTCAAGCCGGAGAACGTCCTGATACAGGACAGCGGCCACATCATGCTCGTCGACTTCGACCTCTCCACGAGGCTCCCGACGCCGCCGCCGCCACCGGAGGAGCAGGACGCAACGATTGCTGATTCCATGCCGGAGCCTCCGCCCAGTTCACCGTCCCCGAACCGCGCGAAGGGCAAGAGGCAACCGGGGGCGGCCTCGTGCTTCCCGTTCTGTTCGGTCGGCGCCACGAAGCCGGCCGCGTCGGCGGACTCGCCGTCGCCAACGTCCACCTCGCGCACGGCCTCGGCGTCGTCCTCGTCCTCATCCTCGACGGCCACCACCGCGTCGTCCTCCACCGCCGCTGGCGTGCGGTCGCCAGCGAAGTCGAACTCGTTCGTGGGCACGGAGGACTACGTGGCGCCGGAGATCATCGCCGGCAGCGGGCACGACTTCTCCGTGGACTGGTGGGGCCTGGG CGTGGTGCTCTACGAGATGCTCTACGGCCGCACGCCGTTCCGGGGGCTGAACAGGAAGGAGACGTTCTACCGCGTCCTCTCCAAGCAGCCGGAGCTCGTCGGCGAGAAG ACGCCGCTGCGCGACCTCATCGCCCGCCTCCTGGAGAAGGACCCCGAGAAGCGCATCGGCGCGCGCGGGATCAAGGCGCACCCGTTCTTCAACGGCGTCGACTGGGACCGCATCCTCCGCGTGGCGCGCCCGCCGTTCATCCCGCCCCCGCCGGAGGACGAGGACGAGGCCGGCGAGGTGCTCGACGTCGAGAAGGTCGTCAACGAGGTGTTCGCGGCCAATGACGGCGGGGCCGCAGCGGGTGTGGTGGAGAAGCCTTCGCCGGAGGCAGGTGGAACTCTGGCCGTCGGCGATGGCGAGCAGAGGAGAGATCCGTCCAAAGAAGGCGATTTCTCCGTATTTTTCTGAGCGTATTTATTGAGTTCTTTTTTAGCGTTCTCTCTCTTAAAAATGGAAAATTACATAGCTATTTTGGTTTTTTCTATGGACTAGAATTATTATGGGGGTCTCTATTAGTAATAGACATAATTAAGACAAAGTACGGCGCGGTGGAGTACATAAATCGACTTTGCTCTTGTGTTTAATGGAGTACAGTCTGTATAGTATTTTTCCCCTTTCCCTTTTATTTTCTTCTTTGTTGGATACATTTCCTCGTGCAACGATGCAAGCTAGGGGATTACTGAAGAGTGTACATAAGGAATGATGAACAGCA ] [+] EMBL AU094787 [ TCCGTGGACTGNTGGCGCCTGGGCCGTGNTGCTCTACGAGATGCTCTACGGCCGCACNCCGTTCCGGGGGCTGAACAGGAAGGAGACGTTCTACCGCGTCCTCTCCAAGCAGCCGGAGCTNGTCGGCGAGAAGAACGC CTGCGCGACCTCATCGCCCGCCTCCTGGAGAAGGACCCCGAGAAGCGCATCGGCGCGCGCGGGATCAAGGCGCACCCGTTCTTCAACGGCGTCGACTGGGACCGCATCCTCCGCGTGGCGCGCCCGCCGTTCATCCCGCCCCCGCCGGAGGACGAGGACGAGGCCGGCGAGGTGCTCGACGTCGAGAAGGTCGTCAACGAGGTGTTCGCGGCCAATGACGGCGGGGCCGCAGCGGGTGTGGTGGAGAAGCCTTCGCCGGAGGCAGGTGGAACTCTGGCCGTCGGCGATGGCGAGCAGAGGAGAGATCCGTCCAAAGAAGGCGATTTCTCCGTATTTTTCTGAGCGTATTTATTGAGTTCTTTTTTAGCGTTCTCTCTCTTAAAAATGGAAAATTACATAGCTATTTTGGTTTTTTCTATGGACTAGAATTATTATGGGGGTCTCTATTAGTAATAGACATAATTAAGACAAAa ] consensusID : consensus_13594#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 709 fasta sequence [GCAGCCGGAGCTCGTCGGCGAGAAGACGCCGCTGCGCGACCTCATCGCCCGCCTCCTGGAGAAGGACCCCGAGAAGCGCATCGGCGCGCGCGGGATCAAGGCGCACCCGTTCTTCAACGGCGTCGACTGGGACCGCATCCTCCGCGTGGCGCGCCCGCCGTTCATCCCGCCCCCGCCGGAGGACGAGGACGAGGCCGGCGAGGTGCTCGACGTCGAGAAGGTCGTCAACGAGGTGTTCGCGGCCAATGACGGCGGGGCCGCAGCGGGTGTGGTGGAGAAGCCTTCGCCGGAGGCAGGTGGAACTCTGGCCGTCGGCGATGGCGAGCAGAGGAGAGATCCGTCCAAAGAAGGCGATTTCTCCGTATTTTTTTGAGCGTATTTATTGAGTTCTTTTTTAGCGTTCTCTCTCTTAAAAATGGAAAATTACATAGCTATTTTGGTTTTTTCTATGGACTAGAATTATTATGGGGGTCTCTATTAGTAATAGACATAATTAAGACAAAGTACGGCGCGGTGGAGTACATAAATCGACTTTGCTCTTGTGTTTAATGGAGTACAGTCTGTATAGTATTTTTCCCCTTTCCCTTTTATTTTCTTCTTTGTTGGATACATTTCCCCGTGCAACGATGCAAGCTAGGGGATTACTGAAGAGTGTACATAAGGAAAGGGGAACAGCAAAATTGGCCTAAAAAAAAAAAACTATAAAAGA] [-] EMBL CB672201 [GCAGCCGGAGCTCGTCGGCGAGAAGACGCCGCTGCGCGACCTCATCGCCCGCCTCCTGGAGAAGGACCCCGAGAAGCGCATCGGCGCGCGCGGGATCAAGGCGCACCCGTTCTTCAACGGCGTCGACTGGGACCGCATCCTCCGCGTGGCGCGCCCGCCGTTCATCCCGCCCCCGCCGGAGGACGAGGACGAGGCCGGCGAGGTGCTCGACGTCGAGAAGGTCGTCAACGAGGTGTTCGCGGCCAATGACGGCGGGGCCGCAGCGGGTGTGGTGGAGAAGCCTTCGCCGGAGGCAGGTGGAACTCTGGCCGTCGGCGATGGCGAGCAGAGGAGAGATCCGTCCAAAGAAGGCGATTTCTCCGTATTTTTTTGAGCGTATTTATTGAGTTCTTTTTTAGCGTTCTCTCTCTTAAAAATGGAAAATTACATAGCTATTTTGGTTTTTTCTATGGACTAGAATTATTATGGGGGTCTCTATTAGTAATAGACATAATTAAGACAAAGTACGGCGCGGTGGAGTACATAAATCGACTTTGCTCTTGTGTTTAATGGAGTACAGTCTGTATAGTATTTTTCCCCTTTCCCTTTTATTTTCTTCTTTGTTGGATACATTTCCCCGTGCAACGATGCAAGCTAGGGGATTACTGAAGAGTGTACATAAGGAAAGGGGAACAGCAAAATTGGCCTAAAAAAAAAAAACTATAAAAGA] consensusID : consensus_13594#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 469 fasta sequence [GCGGGTGTGGTGGAGAAGCCTTCGCCGGAGGCAGGTGGAACTCTGGCCGTCGGCGATGGCGAGCAGAGGAGAGATCCGTCCAAAGAAGGCGATTTCTCCGTATTTTTCTGAGCGTATTTATTGAGTTCTTTTTTAGCGTTCTCTCTCTTAAAAATGGAAAATTACATAGCTATTTTGGTTTTTTCTATGGACTAGAATTATTATGGGGGTCTCTATTAGTAATAGACATAATTAAGACAAAGTACGGCGGTGGAGTACATAAATCGACTTTGCTCTTGTGTTTAATGGAGTACAGTCTGTATAGTATTTTTCCCCTTTCCCTTTTATTTTCTTCTTTGTTGGATACATTTCCCCGTGCAACGATGCAAGCTAGGGGATTACTGAAGAGTGTACATAAGGAATGATGAACAGCAAAATTGGCCTAATGTTGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU166446 [GCGGGTGTGGTGGAGAAGCCTTCGCCGGAGGCAGGTGGAACTCTGGCCGTCGGCGATGGCGAGCAGAGGAGAGATCCGTCCAAAGAAGGCGATTTCTCCGTATTTTTCTGAGCGTATTTATTGAGTTCTTTTTTAGCGTTCTCTCTCTTAAAAATGGAAAATTACATAGCTATTTTGGTTTTTTCTATGGACTAGAATTATTATGGGGGTCTCTATTAGTAATAGACATAATTAAGACAAAGTACGGCGGTGGAGTACATAAATCGACTTTGCTCTTGTGTTTAATGGAGTACAGTCTGTATAGTATTTTTCCCCTTTCCCTTTTATTTTCTTCTTTGTTGGATACATTTCCCCGTGCAACGATGCAAGCTAGGGGATTACTGAAGAGTGTACATAAGGAATGATGAACAGCAAAATTGGCCTAATGTTGTGTCAAAAAAAAAAA ] [+] EMBL CF318117 [ GTGTTTAATGGAGTACAGTCTGTATAGTATTTTTCCCCTTTCCCTTTTATTTTCTTCTTTGTTGGATACATTTCCCCGTGCAACGATGCAAGCTAGGGGATTACTGAAGAGTGTACATAAGGAATGATGAACAGCAAAATTGGCCTAATGTTGTGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13594#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence [CGAGGTGCTTCGACGTCGAGAAGTCGTCAACGAGGTGTTCCGCCAATGACGCGGGGCCCACGGGTGTGGTGGAGAACTTCTGCCGGAGCAGGTGGAACTCTGCCGTCGCTGATGGCGACAGAGGAGAGATCCGTCCAAAAGAAGGCGATTTCTCCGTATTTTTCTGAGCGTATTTATTGAGTTCTTTTTTGAGCGTGTCTCTCTCGTTGAAAAATGGGAAAATTACATGAGCTATTTTGGTTTTTTCTATGGACTAGAATTATTATGGGGTTCTCTATTAGTAATAGACATGAATTAAGACAAAGTACGGCCCGGTGGAGTACAATGAAATCGACTGTTGCTCTTGTGTTTAAATGGAGTACAGTCTGTAT] [+] EMBL BI809356 [CGAGGTGCTTCGACGTCGAGAAGTCGTCAACGAGGTGTTCCGCCAATGACGCGGGGCCCACGGGTGTGGTGGAGAACTTCTGCCGGAGCAGGTGGAACTCTGCCGTCGCTGATGGCGACAGAGGAGAGATCCGTCCAAAAGAAGGCGATTTCTCCGTATTTTTCTGAGCGTATTTATTGAGTTCTTTTTTGAGCGTGTCTCTCTCGTTGAAAAATGGGAAAATTACATGAGCTATTTTGGTTTTTTCTATGGACTAGAATTATTATGGGGTTCTCTATTAGTAATAGACATGAATTAAGACAAAGTACGGCCCGGTGGAGTACAATGAAATCGACTGTTGCTCTTGTGTTTAAATGGAGTACAGTCTGTAT] consensusID : consensus_13594#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 275 fasta sequence [ACACTGCCATGGACTGAAGGAGTACATAAATTTACTTTGCTCTTGTGTTTAATGGAGCACAGTCTGTATAGTATTTTTCCCCTTTCCCTTTTATTTTCTTCTTTGTTGGATACATTTCCCCGTGCAACGATGCAAGCTAGGGGATTACTGAAGAGTGTACATAAGGAATGATGAACAGCATAATTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF330830 [ACACTGCCATGGACTGAAGGAGTACATAAATTTACTTTGCTCTTGTGTTTAATGGAGCACAGTCTGTATAGTATTTTTCCCCTTTCCCTTTTATTTTCTTCTTTGTTGGATACATTTCCCCGTGCAACGATGCAAGCTAGGGGATTACTGAAGAGTGTACATAAGGAATGATGAACAGCATAATTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13594#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 242 fasta sequence [CCCCCTCCCCTGCTTTCCCTCGCGCACCGACCCCACTCGGATCCTCTCCTCCCCTCCTCACTGCCTCTNTCCCGTCCACGAGCGGTTGGTCGGTCGATCGATCGATCGGCGCGGTCCTTCGCCACCGGAGGAGCAGGACGCAACGATTGCTGATTCCATGCCGGAGCCTCCGNCCAGTTCANCGTCCCCGAACCGCGCGAAGGGCAAGAGGNAACCGGGGGCGGCCTCGTGCTTCCCGTTCT] [+] EMBL OSC12422 [CCCCCTCCCCTGCTTTCCCTCGCGCACCGACCCCACTCGGATCCTCTCCTCCCCTCCTCACTGCCTCTNTCCCGTCCACGAGCGGTTGGTCGGTCGATCGATCGATCGGCGCGGTCCTTCGCCACCGGAGGAGCAGGACGCAACGATTGCTGATTCCATGCCGGAGCCTCCGNCCAGTTCANCGTCCCCGAACCGCGCGAAGGGCAAGAGGNAACCGGGGGCGGCCTCGTGCTTCCCGTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 ------------------------------------------------------------ consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 TCCCCCCTCCCCTGCTTTCCCTCGCGCACCGACCCCACTCGGATCCTCTCCTCCCCTCCT 60 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 ------------------------------------------------------------ consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 CACTGCCTCTCTCCCGTCCACGAGCGGTTGGTCGATCGATCGATCGATCGGCGCGGTCCT 120 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 ------------------------------------------------------------ consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 TCGCCAGCCATGGCGGCGGCGGCGATGGCGCCCTCGCCTCCGGAGCCGGCGTTGCCGCGG 180 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 ------------------------------------------------------------ consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 GAGCTCAGCCTGGGGGACCTCAGGGCGGTGTCCATGCTCGGCCGGGGCGCCAAGGGCGTC 240 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 ------------------------------------------------------------ consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 GTGTTCCACGTCGTGCCCGCGGCGGCGGGGGAGGAGGAGGCCTCCATGGCGCTCAAGGCG 300 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 ------------------------------------------------------------ consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 GTCTCGCGGGAGGCGGCGCGGCACAAGAAGAACGGGAGCGGCGGCGAGGACGGGCACCGG 360 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 ------------------------------------------------------------ consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 CGGATCTGGTTCGAGCGGGACGTGCTCATGTCGCTGCGACACCCGCTGCTCCCCTCCCTC 420 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 ------------------------------------------------------------ consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 CGCGGCGTCCTCGCCACCGACGCCGTCGTCGGGTTCGCCATCGACCGCTGCGGCGGCGGA 480 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 ------------------------------------------------------------ consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 GACCTCAACTCGCTCCGGCGCCGCCAGACCGAGAAGATGTTCTCCGACTCCGTCATCCGC 540 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 ------------------------------------------------------------ consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 TTCTACGCCGCGGAGTTGGTGCTGGCGCTCGACTATCTGCACAGCCTCGGCATCGTGTAC 600 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 ------------------------------------------------------------ consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 CGCGACCTCAAGCCGGAGAACGTCCTGATACAGGACAGCGGCCACATCATGCTCGTCGAC 660 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 ------------------------------------------------------------ consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 TTCGACCTCTCCACGAGGCTCCCGACGCCGCCGCCGCCACCGGAGGAGCAGGACGCAACG 720 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 ------------------------------------------------------------ consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 ATTGCTGATTCCATGCCGGAGCCTCCGCCCAGTTCACCGTCCCCGAACCGCGCGAAGGGC 780 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 ------------------------------------------------------------ consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 AAGAGGCAACCGGGGGCGGCCTCGTGCTTCCCGTTCTGTTCGGTCGGCGCCACGAAGCCG 840 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 ------------------------------------------------------------ consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 GCCGCGTCGGCGGACTCGCCGTCGCCAACGTCCACCTCGCGCACGGCCTCGGCGTCGTCC 900 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 ------------------------------------------------------------ consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 TCGTCCTCATCCTCGACGGCCACCACCGCGTCGTCCTCCACCGCCGCTGGCGTGCGGTCG 960 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 ------------------------------------------------------------ consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 CCAGCGAAGTCGAACTCGTTCGTGGGCACGGAGGACTACGTGGCGCCGGAGATCATCGCC 1020 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 ------------------------------------------------------------ consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 GGCAGCGGGCACGACTTCTCCGTGGACTGGTGGGGCCTGGGCGTGGTGCTCTACGAGATG 1080 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 ------------------------------------------------------------ consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 CTCTACGGCCGCACGCCGTTCCGGGGGCTGAACAGGAAGGAGACGTTCTACCGCGTCCTC 1140 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 ----------------------------------------------GCGGGTGTGGTGGA 14 consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 -----GCAGCCGGAGCTCGTCGGCGAGAAGACGCCGCTGCGCGACCTCATCGCCCGCCTC 55 consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 TCCAAGCAGCCGGAGCTCGTCGGCGAGAAGACGCCGCTGCGCGACCTCATCGCCCGCCTC 1200 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 GAAGCCTTCGCCGGAGGCAGGTGGAACTCTGGCCGTCGGCGATGGCGAGCAGAGGAGAGA 74 consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 CTGGAGAAGGACCCCGAGAAGCGCATCGGCGCGCGCGGGATCAAGGCGCACCCGTTCTTC 115 consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 CTGGAGAAGGACCCCGAGAAGCGCATCGGCGCGCGCGGGATCAAGGCGCACCCGTTCTTC 1260 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 TCCGTCCAAAGAAGGCGATTTCTCCGTATTTTTCTGAGCGTATTTATTGAGTTCTTTTTT 134 consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 AACGGCGTCGACTGGGACCGCATCCTCCGCGTGGCGCGCCCGCCGTTCATCCCGCCCCCG 175 consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 AACGGCGTCGACTGGGACCGCATCCTCCGCGTGGCGCGCCCGCCGTTCATCCCGCCCCCG 1320 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 AGCGTTCTCTCTCTTAAAAATGGAAAATTACATAGCTATTTTGGTTTTTTCTATGGACTA 194 consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 CCGGAGGACGAGGACGAGGCCGGCGAGGTGCT-CGACGTCGAGAAGGTCGTCAACGAGGT 234 consensus_13594#3 -----------------------CGAGGTGCTTCGACGTCGAGAAG-TCGTCAACGAGGT 36 consensus_13594#0 CCGGAGGACGAGGACGAGGCCGGCGAGGTGCT-CGACGTCGAGAAGGTCGTCAACGAGGT 1379 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 GAATTATTATGGGGGTCTCTATTAGTAATAGACATAATTAAGACAAAGTACGGCGGTGGA 254 consensus_13594#4 ---------------------------------------ACACTGCCATGGACTGAAGGA 21 consensus_13594#1 GTTCGCGGCCAATGACGGCGGGGCCGCAGCGGGTGTGGTGGAGAAGCCTTCGCCGGAGGC 294 consensus_13594#3 GTTC--CGCCAATGACG-CGGGGCCC--ACGGGTGTGGTGGAGAA-CTTCTGCCGGAG-C 89 consensus_13594#0 GTTCGCGGCCAATGACGGCGGGGCCGCAGCGGGTGTGGTGGAGAAGCCTTCGCCGGAGGC 1439 consensus_13594#5 --------------------------------------------------------CCCC 4 consensus_13594#2 GTACATAAATCGACTTTGCTC-TTGTGTTTAATGGAGTACAG-TCTGTATAGTATTTTTC 312 consensus_13594#4 GTACATAAATTTACTTTGCTC-TTGTGTTTAATGGAGCACAG-TCTGTATAGTATTTTTC 79 consensus_13594#1 AGGTGGAACTCTGGCCGTCGG-CGATGGCGAGCAGAGGAGAGATCCGTCCAAA-GAAGGC 352 consensus_13594#3 AGGTGGAACTCTG-CCGTCGC-TGATGGCGA-CAGAGGAGAGATCCGTCCAAAAGAAGGC 146 consensus_13594#0 AGGTGGAACTCTGGCCGTCGG-CGATGGCGAGCAGAGGAGAGATCCGTCCAAA-GAAGGC 1497 consensus_13594#5 CTCCCCTGCTTTCCCTCGCGCACCGACCCCACTCGGATCCTCTCCTCCCCTCCTCACTGC 64 * * * * * * consensus_13594#2 CCCTTTCCCTTTTATTTT----CTTCTTTGTTGGATACATTTCCCCGTGCAA------CG 362 consensus_13594#4 CCCTTTCCCTTTTATTTT----CTTCTTTGTTGGATACATTTCCCCGTGCAA------CG 129 consensus_13594#1 GATTTCTCCGTATTTTTTTGAGCGTATTTATTGAGTTCTTTTTT-AGCGT---TCTCTCT 408 consensus_13594#3 GATTTCTCCGTATTTTTCTGAGCGTATTTATTGAGTTCTTTTTTGAGCGTGTCTCTCTCG 206 consensus_13594#0 GATTTCTCCGTATTTTTCTGAGCGTATTTATTGAGTTCTTTTTT-AGCGTTC---TCTCT 1553 consensus_13594#5 CTCTNTCCCGTCCACGAGCG--GTTGGTCGGTCGATCGATCGATCGGCGCGG-TCCTTCG 121 * ** * * * * * * * * * consensus_13594#2 ATGCAAGCTAG-GGGATTACTGAAGAGTGTACATAAGGAATGATGAACAGCAAAATTGGC 421 consensus_13594#4 ATGCAAGCTAG-GGGATTACTGAAGAGTGTACATAAGGAATGATGAACAGCATAATTTTT 188 consensus_13594#1 CTTAAAAATGG-AAAATTAC--AT-AGCTATTTTGGTTTTTTCTATGGACTAGAATTATT 464 consensus_13594#3 TTGAAAAATGGGAAAATTAC--ATGAGCTATTTTGGTTTTTTCTATGGACTAGAATTATT 264 consensus_13594#0 CTTAAAAATGG-AAAATTAC---ATAGCTATTTTGGTTTTTTCTATGGACTAGAATTATT 1609 consensus_13594#5 CCACCGGAGGAGCAGGACGC---AACGATTGCTGATTCCATGCCGGAGCCTCCGNCCAGT 178 * * * consensus_13594#2 CTAATGTTGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------ 469 consensus_13594#4 ATAAAA-------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTTTTAA 241 consensus_13594#1 ATGGGGGTCTCTATTAGTAATAGACAT-AATTAAGACAAAGTACGGCGCGGTGGAGTACA 523 consensus_13594#3 ATGGGGTTCTCTATTAGTAATAGACATGAATTAAGACAAAGTACGGCCCGGTGGAGTACA 324 consensus_13594#0 ATGGGGGTCTCTATTAGTAATAGACAT-AATTAAGACAAAGTACGGCGCGGTGGAGTACA 1668 consensus_13594#5 TCANCGTCCCCGAACCGCGCGAAGGGCAAGAGGNAACCGGGGGCGGCCTCGTGCTTCCCG 238 * * * consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------------- 275 consensus_13594#1 T--AAATCGACT-TTGCTCTTGTGTTTAA-TGGAGTACAGTCTGTATAGTATTTTTCCCC 579 consensus_13594#3 ATGAAATCGACTGTTGCTCTTGTGTTTAAATGGAGTACAGTCTGTAT------------- 371 consensus_13594#0 T--AAATCGACT-TTGCTCTTGTGTTTAA-TGGAGTACAGTCTGTATAGTATTTTTCCCC 1724 consensus_13594#5 TTCT-------------------------------------------------------- 242 consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 TTTCCCTTTTATTTTCTTCTTTGTTGGATACATTTCCCCGTGCAACGATGCAAGCTAGGG 639 consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 TTTCCCTTTTATTTTCTTCTTTGTTGGATACATTTCCCCGTGCAACGATGCAAGCTAGGG 1784 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 GATTACTGAAGAGTGTACATAAGGAAAGGGGAACAGCAAAATTGGCCTAAAAAAAAAAAA 699 consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 GATTACTGAAGAGTGTACATAAGGAATGATGAACAGCAAAATTGGCCTAATGTTGTGTCC 1844 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 CTATAAAAGA-------------------------------------------------- 709 consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 ATCCATGTGTTCCATTTCGCTTTGGGTAGCCATTGATGTTAATACCTGTTACTTCCTTTC 1904 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 ------------------------------------------------------------ consensus_13594#4 ------------------------------------------------------------ consensus_13594#1 ------------------------------------------------------------ consensus_13594#3 ------------------------------------------------------------ consensus_13594#0 AGTGGGAGTAATAGAAATGGTCACGGTTTTGTACATTTTTCTGCAACATTCTCTCAAAGT 1964 consensus_13594#5 ------------------------------------------------------------ consensus_13594#2 ----------------------------- consensus_13594#4 ----------------------------- consensus_13594#1 ----------------------------- consensus_13594#3 ----------------------------- consensus_13594#0 AGTAAATGCTTTGAAGTGCCCTTGCGCCA 1993 consensus_13594#5 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||