These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_136#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1086 fasta sequence [AAACCTCTCAAACCCCACAGGCACCGGACCACCACCACCATTGGCACCACCTCGCATCACACTCTCTCGCTCGCCATGAGCTCCCGCGACGCCGCCGCCACGTTCCATGTCTACCAGCCCGTGCAGATCCCGACGGCCACGGTGGCGCCCGCTGCGGCAGTGTCGGCGGCGCCGGCAGAGGCCGTCGCCCAGCTGGTCCCGGCGCCGAGCAAGAAGGCGGCCGGCGCGGCGGGTGGGAAGGACCGGCACAGCAAGGTGAACGGGCGCGGGCGGCGCGTGCGGATGCCGATCGTGTGCGCGGCGCGGGTGTTCCAGCTCACGCGGGAGCTGGGGCTCAAGTCCGACGGCCAGACCATCGAGTGGCTGCTCCGCCAGGCCGAGCCGTCCATCCTCGCCGCCACGGGGACCGGCACCACCCCGGCCGCCTTCGTCTCCTCCTCCGCGCCGTCCACCTCCTCCTCGCACCAGCACACCCTCCTCGGCAAGCGCCAGCGCCAGGAGTCCGCCGCCGCCGACGCCGTCTCCGTCGCCGGCGCCGCGTCCGCGTTCTGGGCGGCGCTGCCCGCACCAGGCCGGCCCGACGCCTGGGGCTTCTCCCCGCTGGACGCGCAGCCGACGTACGTGCCGATGGCGCAGGCGCACCACCACCACCTCAACCTCCTCGCCGCGCTCTCCGGCGCCGCCAGGCGCGCCGAGGAGGAGTCCCGGTGAATCACGCACAGCAGCATGCATCTTCCGAGCTCTGACACGTCTTTCGCTCAATTCACCGACGCGTACTGCACTGGCGTCCGTACGCCTTGTTCTTGGGACAGTTCTTGATTGGAGTGTGCTTCTTCTCTCTACCCCGTGGATCGATCGTTTTGCCTTCTTCCTGTGCGGTTCATCAATTGCTCAAGATGAAATTAATTGTTGCTGTGGTGTTTAAGCTCAAAACTGTAAATACGAGTCCTTAGATCTCATCTTACTCCTACAAATTCCAGCGCCGCATGTGTTTGTGTGTTTGCCACTTGTTTCCAGCTCTTGTGCTATGATTCCATGGAACTTGTTTCAGTTTAGCTTCATCTACATCGTTGTCAGACCAAATCA] [+] EMBL AK061568 [AAACCTCTCAAACCCCACAGGCACCGGACCACCACCACCATTGGCACCACCTCGCATCACACTCTCTCGCTCGCCATGAGCTCCCGCGACGCCGCCGCCACGTTCCATGTCTACCAGCCCGTGCAGATCCCGACGGCCACGGTGGCGCCCGCTGCGGCAGTGTCGGCGGCGCCGGCAGAGGCCGTCGCCCAGCTGGTCCCGGCGCCGAGCAAGAAGGCGGCCGGCGCGGCGGGTGGGAAGGACCGGCACAGCAAGGTGAACGGGCGCGGGCGGCGCGTGCGGATGCCGATCGTGTGCGCGGCGCGGGTGTTCCAGCTCACGCGGGAGCTGGGGCTCAAGTCCGACGGCCAGACCATCGAGTGGCTGCTCCGCCAGGCCGAGCCGTCCATCCTCGCCGCCACGGGGACCGGCACCACCCCGGCCGCCTTCGTCTCCTCCTCCGCGCCGTCCACCTCCTCCTCGCACCAGCACACCCTCCTCGGCAAGCGCCAGCGCCAGGAGTCCGCCGCCGCCGACGCCGTCTCCGTCGCCGGCGCCGCGTCCGCGTTCTGGGCGGCGCTGCCCGCACCAGGCCGGCCCGACGCCTGGGGCTTCTCCCCGCTGGACGCGCAGCCGACGTACGTGCCGATGGCGCAGGCGCACCACCACCACCTCAACCTCCTCGCCGCGCTCTCCGGCGCCGCCAGGCGCGCCGAGGAGGAGTCCCGGTGAATCACGCACAGCAGCATGCATCTTCCGAGCTCTGACACGTCTTTCGCTCAATTCACCGACGCGTACTGCACTGGCGTCCGTACGCCTTGTTCTTGGGACAGTTCTTGATTGGAGTGTGCTTCTTCTCTCTACCCCGTGGATCGATCGTTTTGCCTTCTTCCTGTGCGGTTCATCAATTGCTCAAGATGAAATTAATTGTTGCTGTGGTGTTTAAGCTCAAAACTGTAAATACGAGTCCTTAGATCTCATCTTACTCCTACAAATTCCAGCGCCGCATGTGTTTGTGTGTTTGCCACTTGTTTCCAGCTCTTGTGCTATGATTCCATGGAACTTGTTTCAGTTTAGCTTCATCTACATCGTTGTCAGACCAAATCA] consensusID : consensus_136#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 922 fasta sequence [GACCCTAGCTACCTGTTCAGTGTTCAATTCGCACGGAAAGCCATGGCCTCCCGCGACGCCGCCACCTTCCAGGTCTACCGGCCCATGGCAATGCCAACGCCGGCGGCGCTGCCACCGTCGTCCCAGCAGATCACAATGCCGTTCACGGCGGCGCTCGTGGACGCCGTGCTCCCAGCTCCCCGAAAGGCGGCGGCGACGCAGGGCGGCAAGGACCGGCACAGCAAGGTGAACGGGCGCGGCCGGCGCGTGCGCATGCCGATCGTCTGCGCGGCGCGCGTGTTCCAGCTCACCCGCGAGCTGGGGCTCAAGTCCGACGGCCAGACCATCGAGTGGCTGCTCCGGCAGGCCGAGCCGTCCATCCTCGCCGCCACCGGCTCCGGCACCACCCCGGCCGTCTTCTCCTGCTCGTCCGCCCCCTCCACCGCCTCCTCCTCCTTCCTCCTCGGCAAGCGCCCGCGCCAGGAGGACCACGAGGCGCCGACGTTCTGGGAGGCGCTGCAGCAACAGCCGCGGCCCGCCGTGTCGTCGTGGGGTGCCCTCGCCTCGCCGTCGCAGGAGGCGCAGGCGTACGCGTCGTCGGTGGCGCAGGTCCACCACCTCAACCTACTCTCCGCGCTCTCCGGCGCCGCCACGAGACGGCCAGCACAGGAGGAGTCCCGGTGATCGCGCGCCGCAGCTATGCAGCTCAATTTGCGACGTGATTGCATGCGCGCGCGGGGTTGATTTGTACTTGGAGCTAGTCTTGCTTTGTCTTGTGTGTATGGCTTGCCGTACTTAATTTCCCATTTCCGCTGGTGTTTCCATGGGTGAATTTTGTGTGAATTTGCTTGATTTTAGGCCGGAGAATACTAGTAAGTAGCTGGTGAAGAATCAAGAATGTGATCAGATAGATCATCAGAGGCAGCAATTGTAGATACCAAGT] [+] EMBL AK064708 [GACCCTAGCTACCTGTTCAGTGTTCAATTCGCACGGAAAGCCATGGCCTCCCGCGACGCCGCCACCTTCCAGGTCTACCGGCCCATGGCAATGCCAACGCCGGCGGCGCTGCCACCGTCGTCCCAGCAGATCACAATGCCGTTCACGGCGGCGCTCGTGGACGCCGTGCTCCCAGCTCCCCGAAAGGCGGCGGCGACGCAGGGCGGCAAGGACCGGCACAGCAAGGTGAACGGGCGCGGCCGGCGCGTGCGCATGCCGATCGTCTGCGCGGCGCGCGTGTTCCAGCTCACCCGCGAGCTGGGGCTCAAGTCCGACGGCCAGACCATCGAGTGGCTGCTCCGGCAGGCCGAGCCGTCCATCCTCGCCGCCACCGGCTCCGGCACCACCCCGGCCGTCTTCTCCTGCTCGTCCGCCCCCTCCACCGCCTCCTCCTCCTTCCTCCTCGGCAAGCGCCCGCGCCAGGAGGACCACGAGGCGCCGACGTTCTGGGAGGCGCTGCAGCAACAGCCGCGGCCCGCCGTGTCGTCGTGGGGTGCCCTCGCCTCGCCGTCGCAGGAGGCGCAGGCGTACGCGTCGTCGGTGGCGCAGGTCCACCACCTCAACCTACTCTCCGCGCTCTCCGGCGCCGCCACGAGACGGCCAGCACAGGAGGAGTCCCGGTGATCGCGCGCCGCAGCTATGCAGCTCAATTTGCGACGTGATTGCATGCGCGCGCGGGGTTGATTTGTACTTGGAGCTAGTCTTGCTTTGTCTTGTGTGTATGGCTTGCCGTACTTAATTTCCCATTTCCGCTGGTGTTTCCATGGGTGAATTTTGTGTGAATTTGCTTGATTTTAGGCCGGAGAATACTAGTAAGTAGCTGGTGAAGAATCAAGAATGTGATCAGATAGATCATCAGAGGCAGCAATTGTAGATACCAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_136#0 AAACCTCTCAAACCCCACAGGCACCGGACCACCACCACCATTGGCACCACCTC-GCATCA 59 consensus_136#1 -----------------------------------GACCCTAGCTACCTGTTCAGTGTTC 25 *** * * *** ** * * consensus_136#0 CACTCTCTCGCTC-GCCATGAGCTCCCGCGACGCCGCCGCCACGTTCCATGTCTACCAGC 118 consensus_136#1 AATTCGCACGGAAAGCCATGGCCTCCCGCGACGCCGCCACC---TTCCAGGTCTACCGGC 82 * ** * ** ****** **************** ** ***** ******* ** consensus_136#0 CCGTGCAGATCCCGACGGCCACGGTGGCGCC-----CGCTGCGGCAG-TGTCGGCGGCGC 172 consensus_136#1 CCATGGCAATGCCAACGCCGGCGGCGCTGCCACCGTCGTCCCAGCAGATCACAATGCCGT 142 ** ** ** ** *** * *** * *** ** * **** * * * ** consensus_136#0 ---CGGCAGAGGCCGTCGCCCAGCTGGTCCCGGCGCCGAGCAAGAAGGCGGCCGGCGCGG 229 consensus_136#1 TCACGGCGGCGCTCGTGGACGCCGTGCTCCCAGCTCCCCGAAAGGCGGCGGC-GACGCA- 200 **** * * *** * * ** **** ** ** * *** ****** * *** consensus_136#0 CGGGTGGGAAGGACCGGCACAGCAAGGTGAACGGGCGCGGGCGGCGCGTGCGGATGCCGA 289 consensus_136#1 -GGGCGGCAAGGACCGGCACAGCAAGGTGAACGGGCGCGGCCGGCGCGTGCGCATGCCGA 259 *** ** ******************************** *********** ******* consensus_136#0 TCGTGTGCGCGGCGCGGGTGTTCCAGCTCACGCGGGAGCTGGGGCTCAAGTCCGACGGCC 349 consensus_136#1 TCGTCTGCGCGGCGCGCGTGTTCCAGCTCACCCGCGAGCTGGGGCTCAAGTCCGACGGCC 319 **** *********** ************** ** ************************* consensus_136#0 AGACCATCGAGTGGCTGCTCCGCCAGGCCGAGCCGTCCATCCTCGCCGCCACGGGGACCG 409 consensus_136#1 AGACCATCGAGTGGCTGCTCCGGCAGGCCGAGCCGTCCATCCTCGCCGCCACCGGCTCCG 379 ********************** ***************************** ** *** consensus_136#0 GCACCACCCCGGCCGCCTTCGTCTCCTCCTCCGCGCCGTCCACCTCCTCCTCGCACCAGC 469 consensus_136#1 GCACCACCCCGGCCGTCTTCTCCTGCTCGTCCGCCCCCTCCACCGCCTCCTCCTCCT--- 436 *************** **** ** *** ***** ** ****** ******* * consensus_136#0 ACACCCTCCTCGGCAAGCGCCAGCGCCAGGAGTCCGCCGCCGCCGACGCCGTCTCCGTCG 529 consensus_136#1 ---TCCTCCTCGGCAAGCGCCCGCGCCAGGAGGACCACGA----GGCGCCGACGTTCTGG 489 ***************** ********** * ** * ***** * * * consensus_136#0 CCGGCGCCGCGTCCGCGTTCTGGGCGGCGCTGCCCGCACCAGGCCGGCCCGACGCCTGGG 589 consensus_136#1 GAGGCGCTGCAGCAACA--------GCCGCGGCCCGCCGTGTCGTCGTGGGGTGCCCTCG 541 ***** ** * * * *** ****** * * *** * consensus_136#0 GCTTCTCCCCGCTGGACGCGCAGCCGACGTACGTGCCGATGGCGCAGGCGCACCACCACC 649 consensus_136#1 CCTCGCCGTCGCAGGAGGCGCA---GGCGTACGCGTCGTCGGT---GGCGCAGGTCCACC 595 ** * *** *** ***** * ****** * ** ** ****** ***** consensus_136#0 ACCTCAACCTCCTCGCCGCGCTCTCCGGCGCCGCCA------GGCGCGCCGAGGAGGAGT 703 consensus_136#1 ACCTCAACCTACTCTCCGCGCTCTCCGGCGCCGCCACGAGACGGCCAGCACAGGAGGAGT 655 ********** *** ********************* *** ** ********* consensus_136#0 CCCGGTGAATCACGCACAGCAGC-ATGCATCTTCCGAGCTCTGACACGTCT---TTCGCT 759 consensus_136#1 CCCGGTGA-TCGCGCGCCGCAGCTATGCAGCT--CAATTTGCGACGTGATTGCATGCGCG 712 ******** ** *** * ***** ***** ** * * * *** * * * *** consensus_136#0 CAATTCACCGACGCGTACTGCACTGGCGTCCGTACGCCTTGTTCTTGGGACAGTTCTTGA 819 consensus_136#1 CGCGGGGTTGATTTGTACT----TGGAGCTAGTCTTGCTTTGTCTTGTG----TGTATGG 764 * ** ***** *** * ** *** ***** * * ** consensus_136#0 TTGGAGTGTGCTTCTTCTCTCTACCCCGTGGATCGATCGTTTTGCCTTCTTCCTGTGCGG 879 consensus_136#1 CTTGC-CGTACTTAATTTCCCATTTCCGCTGGTGTTTCCATGGGTGAATTTTGTGTGAAT 823 * * ** *** * ** * *** * * ** * * ** **** consensus_136#0 TTCATCAATTGCTCAAGATGAAATTAATTGTTGCTGTGGTGTTTAAGCTCAAAACTGTAA 939 consensus_136#1 TTGCTTGATT-TTAGGCCGGAGAATACTAGTAAGTAGCTGGTGAAGAATCAAGAATGTGA 882 ** * *** * ** * ** * ** * ** * **** * *** * consensus_136#0 --ATACGAGTCCTTAGATCTCATC-TTACTCCTACAAATTCCAGCGCCGCATGTGTTTGT 996 consensus_136#1 TCAGATAGATCATCAGAGGCAGCAATTGTAGATACCAAGT-------------------- 922 * * ** * *** ** *** ** * consensus_136#0 GTGTTTGCCACTTGTTTCCAGCTCTTGTGCTATGATTCCATGGAACTTGTTTCAGTTTAG 1056 consensus_136#1 ------------------------------------------------------------ consensus_136#0 CTTCATCTACATCGTTGTCAGACCAAATCA 1086 consensus_136#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||