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Oryza sativa
cluster # 13602 cluster # 13602       Sequences # 13       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13602#0 length = 721 sequences # 9  
consensus_13602#1 length = 687 sequences # 1  
consensus_13602#2 length = 679 sequences # 2  
consensus_13602#3 length = 474 sequences # 1  

consensusID : consensus_13602#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 721
fasta sequence
                              [TTTTTTTTTGGCTCAAACGACTTATAATATAAAACGGAGTAATTAGATCCAATTGGGCATTATTTCGTCTGCCATTCGTTAAAACCAATCTTCAAACGCAGCAAAACGATCACCTCTGATCATGGGCAACAACAATTATGAAAATACTACTCCCACAGATACAAAAATTTACAAATTGATTTGCCACTCTTACTACTAGCTGTCCGTTAATCGATCGATGCGTAATGTAAAATAAAAGGGAAAATTGCGTATTAATCTGTACATGGTGGCGTCCTGATTCAGCTTAGAAAGCTTTGGTGTTCTTGGCTTTTGCGGCGTCATCATGTGCCGGGTGCCTTGGGAGTGTGGCGATCGTTTGGGCCTGAGGGGGGGTAATCAGTC-GTCTGCAGCGCCATCCTTCCAAACATCT-CCACGATTGCATCGCTTGTGCTCACGTCATCCTCTGCTGAACCTGAAACACCAACACCCGGACGCGCCGGAGCCTCCACCACCATCATCGCCATCCTGTTACTTCTTGTGAAACGAGCTGCGTCAGAGGAGGCGACGAGGAGGAGACTGACGGCGAGCAAGATCACCAGCAAACTCCTCCCTGACGCCGATCTCGCCATGGCTTTTGTGTGTTCTCCTGCTTCCAACCACGCACAGAACCAGTATCTACCGATCTGTCTGTCTCAA-GGTCGCAATGATATGGTCAGAATAAATAGTTGCGACTTGGAGCGAG]

[-] EMBL AU082435             [TTTTTTTTTGGCTCAAACGACTTATAATATAAAACGGAGTAATTAGATCCAATTGGGCATTATTTCGTCTGCCATTCGTTAAAACCAATCTTCAAACGCAGCAAAACGATCACCTCTGATCATGGGCAACAACAATTATGAAAATACTACTCCCACAGATACAAAAATTTACAAATTGATTTGCCACTCTTACTACTAGCTGTCCGTTAATCGATCGATGCGTAATGTAAAATAAAAGGGAAAATTGCGTATTAATCTGTACATGGTGGCGTCCTGATTCAGCTTAGAAAGCTTTGGTGTTCTTGGCTTTTGCGGCGTCATCATGTGCCGGGTGCCTTGGGAGTGTGGCGATCGTTTGGGCCTGAGGGGGGGTAATCAGTC GTCTGCAGCGCCATCCTTCCAAACATCT CCACGATTGCATCGCTTGTGCTCACGTCATCCTCTGCTGAACCTGAAACACCAACACCCGGACGCGCCGGAGCCTCCACCACCATCATCGCCATCCTGTTACTTCTTGTGAAACGAGCTGCGTCAGAGGAGGCGACGAGGAGGAGACTGACGGCGAGCAAGATCACCAGCAAACTCCT CCTGACGCCGATCTCGCCATGGCTTTTGGGTGNTCTNCTGCTTTCAACCACGCACAGNACCAGTATCTACCGATCTG CTGNCTCAA GG CCCAATGATAT                                ]
[-] EMBL AU092578             [                                      ttttTTAGATCCAATTGGGCATTATTTCGTCTGCCATTCGTTAAAACCAATCTTCAAACGCAGCAAAACGATCACCTCTGATCATGGGCAACAACAATTATGAAAATACTACTCCCACAGATACAAAAATTTACAAATTGATTTGCCACTCTTACTACTAGCTGTCCGTTAATCGATCGATGCGTAATGTAAAATAAAAGGGAAAATTGCGTATTAATCTGTACATGGTGGCGTCCTGATTCAGCTTAGAAAGCTTTGGTGTTCTTGGCTTTTGCGGCGTCATCATGTGCCGGGTGCCTTGGGAGTGTGGCGATCGTTTGGGCCTGAGGGGGGGTAATCAGTC GTCTGCAGCGCCATCCTTCCAAACATCT CCACGATTGCATCGCTTGTGCTCACGTCATCCTCTGCTGAACCTGAAACACCAACACCCGGACGCGCCGGAGCCTCCACCACCATCATCGCCATCCTGTTACTTCTTGTGAAACGAGCTGCGTCAGAGGAGGCGACGAGGAGGAGACTGACGGCGAGCAAGATCACCAGCAAACTCCTCCCTGACGCCGATCTCGCCATGGCTTTTGTGTGTTCTCCTGCT                                                                                            ]
[-] EMBL AK063855             [                                                      GGGCATTATTTCGTCTGCCATTCGTTAAAACCAATCTTCAAACGCAGCAAAACGATCACCTCTGATCATGGGCAACAACAATTATGAAAATACTACTCCCACAGATACAAAAATTTACAAATTGATTTGCCACTCTTACTACTAGCTGTCCGTTAATCGATCGATGCGTAATGTAAAATAAAAGGGAAAATTGCGTATTAATCTGTACATGGTGGCGTCCTGATTCAGCTTAGAAAGCTTTGGTGTTCTTGGCTTTTGCGGCGTCATCATGTGCCGGGTGCCTTGGGAGTGTGGCGATCGTTTGGGCCTGAGGGGGGGTAATCAGTC GTCTGCAGCGCCATCCTTCCAAACATCT CCACGATTGCATCGCTTGTGCTCACGTCATCCTCTGCTGAACCTGAAACACCAACACCCGGACGCGCCGGAGCCTCCACCACCATCATCGCCATCCTGTTACTTCTTGTGAAACGAGCTGCGTCAGAGGAGGCGACGAGGAGGAGACTGACGGCGAGCAAGATCACCAGCAAACTCCTCCCTGACGCCGATCTCGCCATGGCTTTTGTGTGTTCTCCTGCTTCCAACCACGCACAGAACCAGTATCTACC                                                               ]
[-] EMBL CF330109             [                                                                                                                    ttttttTGGGCAACAACAATTATGAAGATACTACTCCCACAGATACAAAAATTTACAAATTGATTTGCCACTCTTACTACTAGCTGTCCGTTAATCGATCGATGCGTAATGTAAAATAAAAGGGAAAATTGCGTATTAATCTGTACATGGTGGCGTCCTGATTCAGCTTAGAAAGCTTTGGTGTTCTTGGCTTTTGCGGCGTCATCATGTGCCGGGTGCCTTGGGAGTGTGGCGATCGTTTGGGCCTGAGGGGGGGTAATCAGTC GTCTGCAGCGCCATCCTTCCAAACATCT CCACGATTGCATCGCTTGTGCTCACGTCATCCTCTGCTGAACCTGAAACACCAACACCCGGACGCGCCGGAGCCTCCACCACCATCATCGCCATCCTGTTACTTCTTGTGAAACGAGCTGCGTCAG                                                                                                                                                                                           ]
[-] EMBL AU092723             [                                                                                                                                    tttTTATGAAAATACTACTCCCACAGATACAAAAATTTACAAATTGATTTGCCACTCTTACTACTAGCTGTCCGTTAATCGATCGATGCGTAATGTAAAATAAAAGGGAAAATTGCGTATTAATCTGTACATGGTGGCGTCCTGATTCAGCTTAGAAAGCTTTGGTGTTCTTGGCTTTTGCGGCGTCATCATGTGCCGGGTGCCTTGGGAGTGTGGCGATCGTTTGGGCCTGAAGGGGGGTAATCAGTC GTCTGCAGCGCCATCCTTCCAAACATCT CCACGATTGCATCGCTTGTGCTCACGTCATCCTCTGCTGAACCTGAAACACCAACACCCGGACGCGCCGGAGCCTCCACCACCATCATCGCCATCCTGTTACTTCTTGTGAAA GAGCTGCGTCAGAGGAGGCGACGAGGAGGAGACTGACGGCGAGCAAGATCACCAGCAAACTCCTCCCTGACGCCGATCTCGCCATGGCTTTTGTGTGTTCTCCTGCTTCCAACCACGCACAGAACCAGTATCTACCGATCTGTCTGTCTCAAGGGTCGCAATGATATGGTCAGAAT                       ]
[-] EMBL AU065838             [                                                                                                                                                                                                          TCCGTTAATCGATCGATGCGTAATGTAAAATAAAAGGGAAAATTGCGTATTAATCTGTACATGGTGGCGTCCTGATTCAGCTTAGAAAGCTTTGGTGTTCTTGGCTTTTGCGGCGTCATCATGTGCCGGGTGCCTTGGGAGTGTGGCGATCGTTTGGG CTGAGGGGGGGTAATCAGTC GTCTGCAGCGCCATCCTTCCAAACATCT CCACGATTGCATCGCTTGTGCTCACGTCATCCTCTGCTGAACCTGAAACACCAACACCCGGACGCGCCGGAGCCTCCACCACCATCATCGCCATCCTGTTACTTCTTGTGAAACGAGCTGCGTCAGAGGAGGCGACGAGGAGGAGACTGACGGCGAGCAAGATCACCAGCAAACTCCTCCCTGACGCCGATCTCGCCATGGCTTTTGTGTGTTCTCCTGCTTCCAACCACGCACAGAACCAGTATCTACCGATCTGTCTGTCTCAA GGTCGCAATGATATGGTCAGAATAAATAGT                ]
[-] EMBL CK085214             [                                                                                                                                                                                                                                                AAAATTGCGTATTAATCTGTACATGGTGGCGTCCTGATTCAGCTTAGAAAGCTTTGGTGTTCTTGGCTTTTGCGGCGTCATCATGTGCCGGGTGCCTTGGGAGTGTGGCGATCGTTTGGGCCTGAGGGGGGGTAATCAGTC GTCTGCAGCGCCATCCTTCCAAACATCT CCACGATTGCATCGCTTGTGCTCACGTCATCCTCTGCTGAACCTGAAACACCAACACCCGGACGCGCCGGAGCCTCCACCACCATCATCGCCATCCTGTTACTTCTTGTGAAACGAGCTGCGTCAGAGGAGGCGACGAGGAGGAGACTGACGGCGAGCAAGATCACCAGCAAACTCCTCCCTGACGCCGATCTCGCCATGGCTTTTGTGTGTTCTCCTGCTTCCAACCACGCACAGAACCAGTATCTACCGATCTGTCTGTCTCAA GGTCGCAATGATATGGTCAGAATAAATAGTTGCGACTTGGAGCGAG]
[-] EMBL C27606               [                                                                                                                                                                                                                                                                                                                      TGCGGCNTCATCATGTGCAGGGTGCCTTGGGAGTGTGGCGATCGTTTGGGCCTGAGGGGGGGTAATCAGTC GTCTGCAGCGCCATCCTTCCAAACATCT CCACGATTGCATTGCTTGTGCTCACGTCATCCTCTGCTGAACCTGAAACACCAACNACCGGACGCGCCGGAGCCTCCACNACCATCATCGCCATCCTGTTACTTCTTGTGAAACGAGCTGCGTCAGAGGAGGCGACGAGGAGGAGACTGACGGCGAGCAAGATCACCAGCAAACTCCTCCCTGACGCCGATC GNCCATGGCTTTTGTGTGTTCTCCTGCTT                                                                                           ]
[-] EMBL AU063120             [                                                                                                                                                                                                                                                                                                                                                                                         AGTCGGTCTNCAGCGCCATCCTTCCAAACATCTCCCACGATTGCATCGCTTGTGCTCACGTCATCCTCTGCTGAACCTGAAACACCAACACCCGGACGCGCCGGAGCCTCCACCACCATCATCGCCATCCTGTTACTTCTTGTGAAACGAGCTGCGTCAGAGGAGGCGACGAGGAGGAGACTGACGGCGAGCAAGATCACCAGCAAACTCCTCCCTGACGCCGATCTCGCCATGGCTTTTGTGTGTTCTCCTGCTTCCAACCACGCACAGAACCAGTATCTACCGATCTGTCTGTCTCAA GGTCGCANTGATATGGTCAGAATA                      ]


>consensus_13602#0 TTTTTTTTTGGCTCAAACGACTTATAATATAAAACGGAGTAATTAGATCCAATTGGGCAT TATTTCGTCTGCCATTCGTTAAAACCAATCTTCAAACGCAGCAAAACGATCACCTCTGAT CATGGGCAACAACAATTATGAAAATACTACTCCCACAGATACAAAAATTTACAAATTGAT TTGCCACTCTTACTACTAGCTGTCCGTTAATCGATCGATGCGTAATGTAAAATAAAAGGG AAAATTGCGTATTAATCTGTACATGGTGGCGTCCTGATTCAGCTTAGAAAGCTTTGGTGT TCTTGGCTTTTGCGGCGTCATCATGTGCCGGGTGCCTTGGGAGTGTGGCGATCGTTTGGG CCTGAGGGGGGGTAATCAGTCGTCTGCAGCGCCATCCTTCCAAACATCTCCACGATTGCA TCGCTTGTGCTCACGTCATCCTCTGCTGAACCTGAAACACCAACACCCGGACGCGCCGGA GCCTCCACCACCATCATCGCCATCCTGTTACTTCTTGTGAAACGAGCTGCGTCAGAGGAG GCGACGAGGAGGAGACTGACGGCGAGCAAGATCACCAGCAAACTCCTCCCTGACGCCGAT CTCGCCATGGCTTTTGTGTGTTCTCCTGCTTCCAACCACGCACAGAACCAGTATCTACCG ATCTGTCTGTCTCAAGGTCGCAATGATATGGTCAGAATAAATAGTTGCGACTTGGAGCGA G



consensusID : consensus_13602#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 687
fasta sequence
                              [TTTTTTTTTTTTTTTATAATATAAAACGGAGTAATTAGATCCAATTGGGCATTATTTCGTCTGCCATTCGTTAAAACCAATCTTCAAACGCAGCAAAACGATCACCTCTGATCATGGGCAACAACAATTATGAAAATACTACTCCCACAGATACAAAAATTTACAAATTGATTTGCCACTCTTACTACTAGCTGTCCGTTAATCGATCGATGCGTAATGTAAAATAAAAGGGAAAATTGCGTATTAATCTGTACATGGGGGCGTCCTGATTCAGCTTAGAAAGCTTTGGTGTTCTTGGCTTTTGCGGCGTCATCATGTGCCGGGTGCCTTGGGAGTGTGGCGATCGTTTGGGCCTGAGGGGGGGTAATCAGTCGTTTGCAGCGCCATCCTTCCAAACATCTCCTCCACGATTGCATCGCTTGTGCTCACGTCATCCTCTGCTGAACCTGAAACACCAACACCCGGACGCGCCGGAGCCTCCACCACCATCATCGCCATCCTGTTACTTCTTGTGAACGAGCTGCGTCAGAGGAGGCGACNAGGAGGAGACTGACGGCNAGCAAGATCACCAGCAAACTCCTCCCTGACGCCNATCTCGCCATGGCTTTTGTGTGTTCTTCTGCTTCCAACCACGCACAGAACCAGTATCTACCGATCTGTCTCCCCCTTGTCTCGTCTGTAATCAAG]

[+] EMBL CA759811             [TTTTTTTTTTTTTTTATAATATAAAACGGAGTAATTAGATCCAATTGGGCATTATTTCGTCTGCCATTCGTTAAAACCAATCTTCAAACGCAGCAAAACGATCACCTCTGATCATGGGCAACAACAATTATGAAAATACTACTCCCACAGATACAAAAATTTACAAATTGATTTGCCACTCTTACTACTAGCTGTCCGTTAATCGATCGATGCGTAATGTAAAATAAAAGGGAAAATTGCGTATTAATCTGTACATGGGGGCGTCCTGATTCAGCTTAGAAAGCTTTGGTGTTCTTGGCTTTTGCGGCGTCATCATGTGCCGGGTGCCTTGGGAGTGTGGCGATCGTTTGGGCCTGAGGGGGGGTAATCAGTCGTTTGCAGCGCCATCCTTCCAAACATCTCCTCCACGATTGCATCGCTTGTGCTCACGTCATCCTCTGCTGAACCTGAAACACCAACACCCGGACGCGCCGGAGCCTCCACCACCATCATCGCCATCCTGTTACTTCTTGTGAACGAGCTGCGTCAGAGGAGGCGACNAGGAGGAGACTGACGGCNAGCAAGATCACCAGCAAACTCCTCCCTGACGCCNATCTCGCCATGGCTTTTGTGTGTTCTTCTGCTTCCAACCACGCACAGAACCAGTATCTACCGATCTGTCTCCCCCTTGTCTCGTCTGTAATCAAG]


>consensus_13602#1 TTTTTTTTTTTTTTTATAATATAAAACGGAGTAATTAGATCCAATTGGGCATTATTTCGT CTGCCATTCGTTAAAACCAATCTTCAAACGCAGCAAAACGATCACCTCTGATCATGGGCA ACAACAATTATGAAAATACTACTCCCACAGATACAAAAATTTACAAATTGATTTGCCACT CTTACTACTAGCTGTCCGTTAATCGATCGATGCGTAATGTAAAATAAAAGGGAAAATTGC GTATTAATCTGTACATGGGGGCGTCCTGATTCAGCTTAGAAAGCTTTGGTGTTCTTGGCT TTTGCGGCGTCATCATGTGCCGGGTGCCTTGGGAGTGTGGCGATCGTTTGGGCCTGAGGG GGGGTAATCAGTCGTTTGCAGCGCCATCCTTCCAAACATCTCCTCCACGATTGCATCGCT TGTGCTCACGTCATCCTCTGCTGAACCTGAAACACCAACACCCGGACGCGCCGGAGCCTC CACCACCATCATCGCCATCCTGTTACTTCTTGTGAACGAGCTGCGTCAGAGGAGGCGACN AGGAGGAGACTGACGGCNAGCAAGATCACCAGCAAACTCCTCCCTGACGCCNATCTCGCC ATGGCTTTTGTGTGTTCTTCTGCTTCCAACCACGCACAGAACCAGTATCTACCGATCTGT CTCCCCCTTGTCTCGTCTGTAATCAAG



consensusID : consensus_13602#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 679
fasta sequence
                              [ACCTCTGATCATGGGCAACAACAATTATGAAAATACTACTCCCACAGATACAAAAATTTACAAATTGATTTGCCACTCTTACTACTAGCTGTCCGTTAATCGATCGATGCGTAATGTAAAATAAAAGGGAAAATTGCGTATTAATCTGTACATGGTGGCGTCCTGATTCAGCTTAGAAAGCTTTGGTGTTCTTGGCTTTTGCGGCGTCATCATGTGCCGGGTGCCTTGGGAGTGTGGCGATCGTTTGGGCCTGAGGGGGGGTAATCAGTCGTTTGCAGCGCCATCCTTCCAAACATCTCCTCCACGATTGCATCGCTTGTGCTCACGTCATCCTCTGCTGAACCTGAAACACCAACACCCGGACGCGCCGGAGCCTCCACCACCATCATCGCCATCCTGTTACTTCCTGCACAAATCCCACAGCCAGAATCACCACAAGAAACTCTCCAAGAACACCCCCCCAAGAACTCTCCTTCTCAGGCAAAATTTTACTTGTGAAACGAGCTGCGTCAGAGGAGGCGACGAGGAGGAGACTGACGGCGAGCAAGATCACCAGCAAACTCCTCCCTGACGCCGATCTCGCCATGGCTTTTGTGTGTTCTTCTGCTTCCAACCACGCACAGAACCAGTATCTACCGATCTGTCTGTCTCAAGGTCGCAATGATATGGTCAGAATAAA]

[+] EMBL CB621567             [ACCTCTGATCATGGGCAACAACAATTATGAAAATACTACTCCCACAGATACAAAAATTTACAAATTGATTTGCCACTCTTACTACTAGCTGTCCGTTAATCGATCGATGCGTAATGTAAAATAAAAGGGAAAATTGCGTATTAATCTGTACATGGTGGCGTCCTGATTCAGCTTAGAAAGCTTTGGTGTTCTTGGCTTTTGCGGCGTCATCATGTGCCGGGTGCCTTGGGAGTGTGGCGATCGTTTGGGCCTGAGGGGGGGTAATCAGTCGTTTGCAGCGCCATCCTTCCAAACATCTCCTCCACGATTGCATCGCTTGTGCTCACGTCATCCTCTGCTGAACCTGAAACACCAACACCCGGACGCGCCGGAGCCTCCACCACCATCATCGCCATCCTGTTACTTCCTGCACAAATCCCACAGCCAGAATCACCACAAGAAACTCTCCAAGAACACCCCCCCAAGAACTCTCCTTCTCAGGCAAAATTTTACTTGTGAAACGAGCTGCGTCAGAGGAGGCGACGAGGAGGAGACTGACGGCGAGCAAGATCACCAGCAAACTCCTCCCTGACGCCGATCTCGCCATGGCTTTTGTGTGTTCTTCTGCTTCCAACCACGCACAGAACCAGTATCTACCGATCTGTCTGTCTCAAGGTCGCAATGATATGGTCAGAATAAA]
[+] EMBL CF330108             [    tttttttTGGGCAACAACAATTATGAAGATACTACTCCCACAGATACAAAAATTTACAAATTGATTTGCCACTCTTACTACTAGCTGTCCGTTAATCGATCGATGCGTAATGTAAAATAAAAGGGAAAATTGCGTATTAATCTGTACATGGTGGCGTCCTGATTCAACTTAAAAAGCTTTGGTGTTCTTGGCTTTTGCGGCGTCATCATGTGCCGGGTGCCTTGGGAGTGTGGCGATCG                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]


>consensus_13602#2 ACCTCTGATCATGGGCAACAACAATTATGAAAATACTACTCCCACAGATACAAAAATTTA CAAATTGATTTGCCACTCTTACTACTAGCTGTCCGTTAATCGATCGATGCGTAATGTAAA ATAAAAGGGAAAATTGCGTATTAATCTGTACATGGTGGCGTCCTGATTCAGCTTAGAAAG CTTTGGTGTTCTTGGCTTTTGCGGCGTCATCATGTGCCGGGTGCCTTGGGAGTGTGGCGA TCGTTTGGGCCTGAGGGGGGGTAATCAGTCGTTTGCAGCGCCATCCTTCCAAACATCTCC TCCACGATTGCATCGCTTGTGCTCACGTCATCCTCTGCTGAACCTGAAACACCAACACCC GGACGCGCCGGAGCCTCCACCACCATCATCGCCATCCTGTTACTTCCTGCACAAATCCCA CAGCCAGAATCACCACAAGAAACTCTCCAAGAACACCCCCCCAAGAACTCTCCTTCTCAG GCAAAATTTTACTTGTGAAACGAGCTGCGTCAGAGGAGGCGACGAGGAGGAGACTGACGG CGAGCAAGATCACCAGCAAACTCCTCCCTGACGCCGATCTCGCCATGGCTTTTGTGTGTT CTTCTGCTTCCAACCACGCACAGAACCAGTATCTACCGATCTGTCTGTCTCAAGGTCGCA ATGATATGGTCAGAATAAA



consensusID : consensus_13602#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 474
fasta sequence
                              [AATATGATTTTTTTTCAAACATCCAGAAAAAGATCTCCTGACCAAAAGAACCATTCTCTTTTGAACAGCACAACGCTTTATGTTTTCTATTTCTGCAGAGATGCACTAAACGTCTTTGTTTTGTCTTCATATTCTGAATCGTGAGCCTTTCCAGGAAGCAATAGACGCATCCGGAACTATGCGTAGTAATCGAGCTTTACACGCATCAATACACAATTAGGGATTCAGATTTTTACAACTGAGGCAACACAAAATCACTCTGAATGAAACCGAGAACTTTTACCTCTGCTGAACCTGAAACACCAACACCCGGACGCGCCGGAGCCTCCACCACCATCATCGCCATCCTGTTACTTCTTGTGAAACGAGCTGCGTCAGAGGAGGCGACGAGGAGGAGACTGACGGCGAGCAAGATCACCAGCAAACTCCTCCCTGACGCCGATCTCGCCATGGCTTTTGTGTGTTCTCCTGCTT]

[-] EMBL CB640668             [AATATGATTTTTTTTCAAACATCCAGAAAAAGATCTCCTGACCAAAAGAACCATTCTCTTTTGAACAGCACAACGCTTTATGTTTTCTATTTCTGCAGAGATGCACTAAACGTCTTTGTTTTGTCTTCATATTCTGAATCGTGAGCCTTTCCAGGAAGCAATAGACGCATCCGGAACTATGCGTAGTAATCGAGCTTTACACGCATCAATACACAATTAGGGATTCAGATTTTTACAACTGAGGCAACACAAAATCACTCTGAATGAAACCGAGAACTTTTACCTCTGCTGAACCTGAAACACCAACACCCGGACGCGCCGGAGCCTCCACCACCATCATCGCCATCCTGTTACTTCTTGTGAAACGAGCTGCGTCAGAGGAGGCGACGAGGAGGAGACTGACGGCGAGCAAGATCACCAGCAAACTCCTCCCTGACGCCGATCTCGCCATGGCTTTTGTGTGTTCTCCTGCTT]


>consensus_13602#3 AATATGATTTTTTTTCAAACATCCAGAAAAAGATCTCCTGACCAAAAGAACCATTCTCTT TTGAACAGCACAACGCTTTATGTTTTCTATTTCTGCAGAGATGCACTAAACGTCTTTGTT TTGTCTTCATATTCTGAATCGTGAGCCTTTCCAGGAAGCAATAGACGCATCCGGAACTAT GCGTAGTAATCGAGCTTTACACGCATCAATACACAATTAGGGATTCAGATTTTTACAACT GAGGCAACACAAAATCACTCTGAATGAAACCGAGAACTTTTACCTCTGCTGAACCTGAAA CACCAACACCCGGACGCGCCGGAGCCTCCACCACCATCATCGCCATCCTGTTACTTCTTG TGAAACGAGCTGCGTCAGAGGAGGCGACGAGGAGGAGACTGACGGCGAGCAAGATCACCA GCAAACTCCTCCCTGACGCCGATCTCGCCATGGCTTTTGTGTGTTCTCCTGCTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13602#0      TTTTTTTTTGGCTCAAACGACTTATAATATAAAACGGAGTAATTAGATCCAATTGGGCAT 60
consensus_13602#1      TTTTTTTTTTTTT--------TTATAATATAAAACGGAGTAATTAGATCCAATTGGGCAT 52
consensus_13602#2      ------------------------------------------------------------
consensus_13602#3      ------------------------------------------------------------
                                                                                   

consensus_13602#0      TATTTCGTCTGCCATTCGTTAAAACCAATCTTCAAACGCAGCAAAACGATCACCTCTGAT 120
consensus_13602#1      TATTTCGTCTGCCATTCGTTAAAACCAATCTTCAAACGCAGCAAAACGATCACCTCTGAT 112
consensus_13602#2      ---------------------------------------------------ACCTCTGAT 9
consensus_13602#3      ------------------------------------------------------------
                                                                                   

consensus_13602#0      CATGGGCAACAACAATTATGAAAATACTACTCCCACAGATACAAAAATTTACAAATTGAT 180
consensus_13602#1      CATGGGCAACAACAATTATGAAAATACTACTCCCACAGATACAAAAATTTACAAATTGAT 172
consensus_13602#2      CATGGGCAACAACAATTATGAAAATACTACTCCCACAGATACAAAAATTTACAAATTGAT 69
consensus_13602#3      ----------------------AATATGATTTTTT----TTCAAACATCCAGAAAAAGAT 34
                                             ****  * *        * **** **  * ***  ***

consensus_13602#0      TTGCCACTCTTACTACTAGCTGTCCGTTAATCGAT-CGATGCGTAATGTAAAATAAAAGG 239
consensus_13602#1      TTGCCACTCTTACTACTAGCTGTCCGTTAATCGAT-CGATGCGTAATGTAAAATAAAAGG 231
consensus_13602#2      TTGCCACTCTTACTACTAGCTGTCCGTTAATCGAT-CGATGCGTAATGTAAAATAAAAGG 128
consensus_13602#3      CTCCTGACCAAAAGAACCATTCTCTTTTGAACAGCACAACGCTTTATGTTTTCTATTTCT 94
                        * *    *  *  *     * **  ** * *    * * ** * ****    **     

consensus_13602#0      GAAAATTGCGTATTAATC-TGTACATGGTGGCGTCCTGATTCAGCTTAGAAAGCTTTGGT 298
consensus_13602#1      GAAAATTGCGTATTAATC-TGTACATGGGGGCGTCCTGATTCAGCTTAGAAAGCTTTGGT 290
consensus_13602#2      GAAAATTGCGTATTAATC-TGTACATGGTGGCGTCCTGATTCAGCTTAGAAAGCTTTGGT 187
consensus_13602#3      GCAGAG-ATGCACTAAACGTCTTTGTTTTGTCTTCAT-ATTCTGAATCGTGAGCCTT--- 149
                       * * *    * * *** * * *   *   * * ** * **** *  * *  *** **   

consensus_13602#0      GTTCTTGGCTTTTGCGGCGTCATCATGTGCCGGGTGCCTTGGGAGTGTGGCGATCGTTTG 358
consensus_13602#1      GTTCTTGGCTTTTGCGGCGTCATCATGTGCCGGGTGCCTTGGGAGTGTGGCGATCGTTTG 350
consensus_13602#2      GTTCTTGGCTTTTGCGGCGTCATCATGTGCCGGGTGCCTTGGGAGTGTGGCGATCGTTTG 247
consensus_13602#3      --TCCAGGAAGCAATAGACGCATCCGGAACTATGCGTAGTAATCGAGCTTTACACGCATC 207
                         **  **        *   ****  *  *   * *   *    * *       **  * 

consensus_13602#0      GGCCTGAGGGGGGGTAATCAGTCGTCTGCAGCGCCATCCTTCCAAACATCTCC---ACGA 415
consensus_13602#1      GGCCTGAGGGGGGGTAATCAGTCGTTTGCAGCGCCATCCTTCCAAACATCTCCTCCACGA 410
consensus_13602#2      GGCCTGAGGGGGGGTAATCAGTCGTTTGCAGCGCCATCCTTCCAAACATCTCCTCCACGA 307
consensus_13602#3      AATACACAATTAGGGATTCAGATTTTTACAACTGAGGCAACACAAA-ATCACTC---TGA 263
                                   ** * ****   * * ** *     *    **** *** *      **

consensus_13602#0      TTGCATCGCTTGTGCTCACGTCATCCTCTGCTGAACCTGAAACACCAACACCCGGACGCG 475
consensus_13602#1      TTGCATCGCTTGTGCTCACGTCATCCTCTGCTGAACCTGAAACACCAACACCCGGACGCG 470
consensus_13602#2      TTGCATCGCTTGTGCTCACGTCATCCTCTGCTGAACCTGAAACACCAACACCCGGACGCG 367
consensus_13602#3      ATGAAAC-----CGAGAACTTTTACCTCTGCTGAACCTGAAACACCAACACCCGGACGCG 318
                        ** * *      *   ** *   ************************************

consensus_13602#0      CCGGAGCCTCCACCACCATCATCGCCATCCTGTTACTTC--------------------- 514
consensus_13602#1      CCGGAGCCTCCACCACCATCATCGCCATCCTGTTACTTC--------------------- 509
consensus_13602#2      CCGGAGCCTCCACCACCATCATCGCCATCCTGTTACTTCCTGCACAAATCCCACAGCCAG 427
consensus_13602#3      CCGGAGCCTCCACCACCATCATCGCCATCCTGTTACTTC--------------------- 357
                       ***************************************                     

consensus_13602#0      ------------------------------------------------------------
consensus_13602#1      ------------------------------------------------------------
consensus_13602#2      AATCACCACAAGAAACTCTCCAAGAACACCCCCCCAAGAACTCTCCTTCTCAGGCAAAAT 487
consensus_13602#3      ------------------------------------------------------------
                                                                                   

consensus_13602#0      -----TTGTGAAACGAGCTGCGTCAGAGGAGGCGACGAGGAGGAGACTGACGGCGAGCAA 569
consensus_13602#1      -----TTGTGAA-CGAGCTGCGTCAGAGGAGGCGACNAGGAGGAGACTGACGGCNAGCAA 563
consensus_13602#2      TTTACTTGTGAAACGAGCTGCGTCAGAGGAGGCGACGAGGAGGAGACTGACGGCGAGCAA 547
consensus_13602#3      -----TTGTGAAACGAGCTGCGTCAGAGGAGGCGACGAGGAGGAGACTGACGGCGAGCAA 412
                            ******* *********************** ***************** *****

consensus_13602#0      GATCACCAGCAAACTCCTCCCTGACGCCGATCTCGCCATGGCTTTTGTGTGTTCTCCTGC 629
consensus_13602#1      GATCACCAGCAAACTCCTCCCTGACGCCNATCTCGCCATGGCTTTTGTGTGTTCTTCTGC 623
consensus_13602#2      GATCACCAGCAAACTCCTCCCTGACGCCGATCTCGCCATGGCTTTTGTGTGTTCTTCTGC 607
consensus_13602#3      GATCACCAGCAAACTCCTCCCTGACGCCGATCTCGCCATGGCTTTTGTGTGTTCTCCTGC 472
                       **************************** ************************** ****

consensus_13602#0      TTCCAACCACGCACAGAACCAGTATCTACCGATCTGTCTGTCTCAAGGTCGCAATGATAT 689
consensus_13602#1      TTCCAACCACGCACAGAACCAGTATCTACCGATCTGTCTCCCCCTTG-TCTCGTC--TGT 680
consensus_13602#2      TTCCAACCACGCACAGAACCAGTATCTACCGATCTGTCTGTCTCAAGGTCGCAATGATAT 667
consensus_13602#3      TT---------------------------------------------------------- 474
                       **                                                          

consensus_13602#0      GGTCAGAATAAATAGTTGCGACTTGGAGCGAG 721
consensus_13602#1      AATCAAG------------------------- 687
consensus_13602#2      GGTCAGAATAAA-------------------- 679
consensus_13602#3      --------------------------------
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)