These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13615#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2375 fasta sequence [ATTTTCCGCGGCGCCGCGCGTACCGTTCGTCCGTCGTCGGTGGAGTGGAGGCTGCCGAACTGTAAAGCTCACGGGTTGGGCGAATCTCCACTCCTCACTCGCCCCCCACTGAAATCGCCAAAAACCCAACTGAAAAACCCCCCCACCGGAATCCTCACGCACACACCTCGCCGCGGAAGCTGTGGCGTCCGCGTAGGAGCAGCTGTTTCTTTTTTGGATCCAATCCAATCGGATAAGCAGCCATGGCTGTGAAGGCGAGTTCTGCAGATAACAGGACCAGAAGCACCGTGTCACTATGCATAGTGATTGGCATGTGCTGCTTCTTCTACATCCTTGGGGCATGGCAGAAGAGCGGATTTGGAAAGGGGGACAGCATTGCGCTGGAGATCACG-AAGCGAACGGACTGCACAATCTTGCCTAACCTTAGCTTCGACACGCACCTCGCTAAGCAGGCAAGGCCTCGCGATCTCGTTTCGCCGGCGAAGAAGTTTAAGCCGTGCCCGGATCGCTACACGGATTATACCCCTTGCCAAGATCAGAACAGAGCGATGAAGTTCCCTCGGGAGAATATGAATTACAGGGAGCGGCATTGCCCACCGCAGAAAGAGAAGCTGCACTGCCTGATACCGCCACCTAAGGGATATGTTGCTCCATTCCCATGGCCGAAAAGTCGGGACTATGTTCCTTTCGCGAATTGTCCCTATAAGAGCTTGACAGTCGAGAAAGCGATCCAGAATTGGGTTCAGTTCGAAGGCAACGTCTTCAGATTCCCTGGTGGAGGAACACAATTCCCTCAAGGAGCTGATAAGTACATCGATCAACTTGCATCAGTTGTTCCAATCGCCAATGGAACTGTCAGGACTGCATTGGACACTGGCTGTGGGGTGGCTAGTTGGGGAGCTTACTTATTAAAGAGAAATGTCTTGGCGATGTCATTTGCGCCAAGAGATTCACACGAGGCACAAGTGCAGTTTGCTCTGGAGAGGGGTGTCCCAGCTGTTATCGGTGTTCTTGGGACGATAAAACTCCCTTACCCATCAAGAGCCTTTGACATGGCCCATTGTTCCAGGTGTTTGATTCCATGGGGAGCAAATGGTGGAATATACATGATGGAAGTTGATAGGGTTCTAAGACCTGGTGGATACTGGGTGCTTTCAGGGCCTCCGATTAATTGGAAAGTGAACTACAAGGGTTGGCAGCGTACAAAGAAAGATCTTGAGGCGGAGCAGAATGAAATAGAGGAAATTGCTGACCTTCTTTGTTGGGAAAAAGTCAAAGAGATTGGTGAGATGGCAATATGGAGGAAAAGATTAAACACTGAGTCTTGTCCCTCTAGGCAAGATGAATCAAGTGTGCAGATGTGTGACTCAACAAATGCAGATGATGTCTGGTACAAGAAGATGAAGCCTTGTGTGACACCTATTCCTGATGTAAATGATCCAAGTGAAGTTGCTGGAGGTGCAATCAAGCCCTTCCCAAGCAGGCTCAATGCAGTTCCTCCAAGGATTGCTAATGGCCTGATTCCAGGTGTTTCATCTCAGGCCTACCAGAAAGACATCAAAATGTGGAAGAAGCATGTCAAGGCTTATAGCAGTGTGAACAAGTACCTCCTCACTGGAAGATACAGAAACATTATGGACATGAATGCAGGTTTTGGAGGATTTGCTGCTGCCATTGAGTCCCCAAAATCTTGGGTGATGAATGCCGTGCCTACGATTTCAAAGATGTCAACTCTAGGGGCTATTTACGAGCGAGGATTGATTGGCATATACCACGACTGGTGCGAAGCTTTCTCTACTTACCCAAGAACGTATGATCTTATCCACGCTAGTGGCCTTTTCACCCTGTACAAAAACAAGTGCAACATGGAAGACATCCTACTGGAGATGGACCGCGTCCTGAGGCCAGAAGGCGCCGTCATAATGAGGGACGATGTCGATATCCTGACGAAGGTGAACAGGCTCGCCCTCGGCATGAAATGGAACACGAGGCTGGTCGATCACGAGGACGGCCCCATGGTGCGTGAGAAGGTGCTGTATGCTGTGAAGCAGTACTGGGTAGGCGGAAACCAGACTGCAGCAGCTGCAGCATG-AAGCAGGCGTAAATCCTAACAC-AAAAGATGGAAGAACTCTGCAATCCATCCTGAACTGACTTCCAGGAAAGGTAAGATACGGGAGTCATTTAGTGAGAGGCCAGGTGATCTTGTCGGAGTGGCGATGAAG-AAGCAACCCGGGCTTTCTTGGTTGCTCTGATG-ATCGGCTGGCGTATATTGTTGTAA-CAATTTTGTAATTTCATTTGTCACTCTCTAGTGTTAACTGGTTACG-ATGCTTAATTCAAG-GTTTGCTTGTCAGTTGTCACGGTGAAAAAAAAAAAAA] [+] EMBL AK102287 [ATTTTCCGCGGCGCCGCGCGTACCGTTCGTCCGTCGTCGGTGGAGTGGAGGCTGCCGAACTGTAAAGCTCACGGGTTGGGCGAATCTCCACTCCTCACTCGCCCCCCACTGAAATCGCCAAAAACCCAACTGAAAAACCCCCCCACCGGAATCCTCACGCACACACCTCGCCGCGGAAGCTGTGGCGTCCGCGTAGGAGCAGCTGTTTCTTTTTTGGATCCAATCCAATCGGATAAGCAGCCATGGCTGTGAAGGCGAGTTCTGCAGATAACAGGACCAGAAGCACCGTGTCACTATGCATAGTGATTGGCATGTGCTGCTTCTTCTACATCCTTGGGGCATGGCAGAAGAGCGGATTTGGAAAGGGGGACAGCATTGCGCTGGAGATCACG AAGCGAACGGACTGCACAATCTTGCCTAACCTTAGCTTCGACACGCACCTCGCTAAGCAGGCAAGGCCTCGCGATCTCGTTTCGCCGGCGAAGAAGTTTAAGCCGTGCCCGGATCGCTACACGGATTATACCCCTTGCCAAGATCAGAACAGAGCGATGAAGTTCCCTCGGGAGAATATGAATTACAGGGAGCGGCATTGCCCACCGCAGAAAGAGAAGCTGCACTGCCTGATACCGCCACCTAAGGGATATGTTGCTCCATTCCCATGGCCGAAAAGTCGGGACTATGTTCCTTTCGCGAATTGTCCCTATAAGAGCTTGACAGTCGAGAAAGCGATCCAGAATTGGGTTCAGTTCGAAGGCAACGTCTTCAGATTCCCTGGTGGAGGAACACAATTCCCTCAAGGAGCTGATAAGTACATCGATCAACTTGCATCAGTTGTTCCAATCGCCAATGGAACTGTCAGGACTGCATTGGACACTGGCTGTGGGGTGGCTAGTTGGGGAGCTTACTTATTAAAGAGAAATGTCTTGGCGATGTCATTTGCGCCAAGAGATTCACACGAGGCACAAGTGCAGTTTGCTCTGGAGAGGGGTGTCCCAGCTGTTATCGGTGTTCTTGGGACGATAAAACTCCCTTACCCATCAAGAGCCTTTGACATGGCCCATTGTTCCAGGTGTTTGATTCCATGGGGAGCAAATGGTGGAATATACATGATGGAAGTTGATAGGGTTCTAAGACCTGGTGGATACTGGGTGCTTTCAGGGCCTCCGATTAATTGGAAAGTGAACTACAAGGGTTGGCAGCGTACAAAGAAAGATCTTGAGGCGGAGCAGAATGAAATAGAGGAAATTGCTGACCTTCTTTGTTGGGAAAAAGTCAAAGAGATTGGTGAGATGGCAATATGGAGGAAAAGATTAAACACTGAGTCTTGTCCCTCTAGGCAAGATGAATCAAGTGTGCAGATGTGTGACTCAACAAATGCAGATGATGTCTGGTACAAGAAGATGAAGCCTTGTGTGACACCTATTCCTGATGTAAATGATCCAAGTGAAGTTGCTGGAGGTGCAATCAAGCCCTTCCCAAGCAGGCTCAATGCAGTTCCTCCAAGGATTGCTAATGGCCTGATTCCAGGTGTTTCATCTCAGGCCTACCAGAAAGACATCAAAATGTGGAAGAAGCATGTCAAGGCTTATAGCAGTGTGAACAAGTACCTCCTCACTGGAAGATACAGAAACATTATGGACATGAATGCAGGTTTTGGAGGATTTGCTGCTGCCATTGAGTCCCCAAAATCTTGGGTGATGAATGCCGTGCCTACGATTTCAAAGATGTCAACTCTAGGGGCTATTTACGAGCGAGGATTGATTGGCATATACCACGACTGGTGCGAAGCTTTCTCTACTTACCCAAGAACGTATGATCTTATCCACGCTAGTGGCCTTTTCACCCTGTACAAAAACAAGTGCAACATGGAAGACATCCTACTGGAGATGGACCGCGTCCTGAGGCCAGAAGGCGCCGTCATAATGAGGGACGATGTCGATATCCTGACGAAGGTGAACAGGCTCGCCCTCGGCATGAAATGGAACACGAGGCTGGTCGATCACGAGGACGGCCCCATGGTGCGTGAGAAGGTGCTGTATGCTGTGAAGCAGTACTGGGTAGGCGGAAACCAGACTGCAGCAGCTGCAGCATG AAGCAGGCGTAAATCCTAACAC AAAAGATGGAAGAACTCTGCAATCCATCCTGAACTGACTTCCAGGAAAGGTAAGATACGGGAGTCATTTAGTGAGAGGCCAGGTGATCTTGTCGGAGTGGCGATGAAG AAGCAACCCGGGCTTTCTTGGTTGCTCTGATG ATCGGCTGGCGTATATTGTTGTAA CAATTTTGTAATTTCATTTGTCACTCTCTAGTGTTAACTGGTTACG ATGCTTAATTCAAG GTTTGCTTGTCAGT ] [+] EMBL AU225593 [ GCCGCTGAACTGTAAAGCTCACGGGTTGGGCGAATCTCCACTCCTCACTCGCCCCCCACTGAAATCGCCAAAAACCCAACTGAAAAACCCCCCCACCGGAATCCTCACGCACACACCTCGCCGCGGAAGCTGTGGCGTCCGCGTAGGAGCAGCTGTTTCTTTTTTGGATCCAATCCAATCGGATAAGCAGCCATGGCTGTGAAGGCGAGTTCTGCAGATAACAGGACCAGAAGCACCGTGTCACTATGCATAGTGATTGGCATGTGCTGCTTCTTCTACATCCTTGGGGCATGGCAGAAGAGCGGATTTGGAAAGGGGGACAGCATTGCGCTGGAGATCACG AAGCGAACGGACTGCACAATCTTGCCTACCTTTAGCTTCGACACGCACCTCGCTAAGCAGGCAAAGCCTCGCGATC ] [+] EMBL CF328070 [ TCCTCACGCACACACCTCGCCGCGGAAGCTGTGGCGTCCGCGTAGGAGCAGCTGTTTCTTTTTTGGATCCAATCCAATCGGATAAGCAGCCATGGCTGTGAAGGCGAGTTCTGCAGATAACAGGACCAGAAGCACCGTGTCACTATGCATAGTGATTGGCATGTGCTGCTTCTTCTACATCCTTGGGGCATGGCAGAAGAGCGGATTTGGAAAGGGGGACAGCATTGCGCTGGAGATCACG AAGCGAACGGACTGCACAATCTTGCCTAACCTTAGCTTCGACACGCACCTCGCTAAGCAGGCAAGGCCTCGCGATCTCGTTTCGCCGGCGAAGAAGTTTAAGCCGTGCCCGGATCGCTACACGGATTATACCCCTTGCCAAGATCAGAACAGAGCGATGAAGTTCCCTCGGGAGAATATGAATTACAGGGAGCGGCATTGCCCACCGCAGAAAGAGAAGCTGCACTGCCTGATACCGCCACCTAAGGGATATGTTGCTCCATTCCCATGGCCGAAAAGTCGGGACTATGTTCCTTTCGCGAATTGTCCCTATAAGAGCTTGACAGTCGAG ] [+] EMBL AU181490 [ GCGGAAGCTGTGGCGTCCGCGTAGGAGCAGCTGTTTCTTTTTTGGATCCAATCCAATCGGATAAGCAGCCATGGCTGTGAAGGCGAGTTCTGCAGATAACAGGACCAGAAGCACCGTGTCACTATGCATAGTGATTGGCATGTGCTGCTTCTTCTACATCCTTGGGGCATGGCAGAAGAGCGGATTTGGAAAGGGGGACAGCATTGCGCTGGAGATCACG AAGCGAACGGACTGCACAATCTTGCCTAACCTTAGCTTCGACACGCACCTCGCTAAGCAGGCAAGGCCTCGCGATCTCGTTTCGCCGGCGAAGAAGTTTAAGCCGTGCCCGGATCGCTACACGGATTATACCCCTTGCCAAGATCAGAACAGAGCGATGAAGTTCCCTC ] [+] EMBL AU108642 [ GTGGCGTCCGCGTAGGAGCAGCTGTTTCTTTTTTGGNTCCAATCCAATCGGATAAGCAGCCATGGCTGTGAAGGCGAGTTCTGCAGATAACAGGACCAGAAGCACCGTGTCACTATGCATAGTGATTGGCATGTNCTGCTTCTTCTACATCCTTGGGGCATNGCAGAAGAGCGGATTTGGAAAGGGGGACAGCATTGCGCTNGAGATCACGAAAGCGAACGGACTGCACAATNTTGCCTA ] [+] EMBL AU225450 [ gccgctAGATTGGTGAGATGGCAATATGGAGGAAAAGATTAAACACTGAGTCTTGTCCCTCTAGGCAAGATGAATCAAGTGTGCAGATGTGTGACTCAACAAATGCAGATGATGTCTGGTACAAGAAGATGAAGCCTTGTGTGACACCTATTCCTGATGTAAATGATCCAAGTGAAGTTGCTGGAGGTGCAATCAAGCCCTTCCCAAGCAGGCTCAATGCAGTTCCTCCAAGGATTGCTAATGGCCTGATTCCAGGTGTTTCATCTCAGGCCTACCAGAAAGACATCAAAATGTGGAAGAAGCATGTCAAGGCTTATAGCAGTGTGAACAAGTACCTCCTCACTGGAAGATACAGAAACATTATGGACATGAATGCAGGTTTTGGA ] [-] EMBL CB657336 [ TACCTCCTCACTGGAAGATACAGAAACATTATGGACATGAATGCAGGTTTTGGAGGATTTGCTGCTGCCATTGAGTCCCCAAAATCTTGGGTGATGAATGCCGTGCCTACGATTTCAAAGATGTCAACTCTAGGGGCTATTTACGAGCGAGGATTGATTGGCATATACCTCGACTGGTGCGAAGCTTTCTCTACTTACCCAAGAACGTATGATCTTATCCACGCTAGTGGCCTTTTCACCCTGTACAAAAACAAGTGCAACATGGAAGACATCCTACTGGAGATGGACCGCGTCCTGAGGCCAGAAGGCGCCGTCATAATGAGGGACGATGTCGATATCCTGACGAAGGTGAACAGGCTCGCCCTCGGCATGAAATGGAACACGAGGCTGGTCGATCACGAGGACGGCCCCATGGTGCGTGAGAAGGTGCTGTATGCTGTGAAGCAGTACTGGGTAGGCGGAAACCAGACTGCAGCAGCTGCAGCATG AAGCAGGCGTAAATCCTAACAC AAAAGATGGAAGAACTCTGCAATCCATCCTGAACTGACTTCCAGGAAAGGTAAGATACGGGAGTCATTTAGTGAGAGGCCAGGTGATCTTGTCGGAGTGGCGATGAAG AAGCAACCCGGGCTTTTTTGGTTGCTTTGATG ATCGGCTGGCGTATATTGTTGTAA CAATTTTGTAATTTCATTTGTCACTCTCTAGTGTTAACTGGTTACG ATGCTTAATTCAAGAGTTTGCTTGTCAGTTGTCACGGTGAAAAAAAAAggga] [-] EMBL CA759104 [ GGGTGATGAATGTCGTGCCTACGATTTCAAAGATGTCAACTCTAGGGGCTATTTACGAGCGAGGATTGATTGGCATATACCACGACTGGTGCGAAGCTTTCTCTACTTACCCAAGAACGTATGATTTTATCCACGCTAGTGGCCTTTTCACCCTGTACAAAAACAAGTGCAACATGGAAGACATCCTACTGGAGATGGACCGCGTCCTGAGGCCAGAAGGGGCCGTTATAATGAGGGACGATGTCGATATCCTGACGAAGGTGAACAGGCTCGCCCTCGGCATGAAATGGAACACGAGGCTGGTCGATCACGAGGACGGCCCAATGGTGCGTGAGAAGGTGCTGTATGCTGTGAAGCAGTACTGGGTAGGCGGAAACCAGACTGCAGCAGCTGCAGCATG AAGCAGGCGTAAATCCTAACAC AAAAGATGGAAGAACTTTGCAATCCATCCTGAACTGACTTCCAGGAAAGGTTAGATACGGGAGTCATTTAGTGAGAGGCCAGGTGATCTTGTTGGAGTGGCGATGAAG AAGCAACCCGGGCTTTTTTGGTTGCTTTGATG ATCGGCAGGCGTATATTGTTGTAA CAATTTTGTAATTTCATTTGTCCCTCTCTAGTGTTAACTGGTTACG ATGCTTAATTCAAG GTTTGCTTGTCAGTTGTCCCGGTGAAAAAAAAAAAAA] [+] EMBL AU068357 [ GTGAAGCAGTACTGGGTAGTCGGAAACCAGACTGCAGCANCTGCAGCNTGAAAACAGGCGTAAATCCTAACAC AAAAGATGGAAGAACTCTGCAATCCATCCTGAACTGACTTCCAGGAAAGGTAAGATACGGGAGTCATTTAGTGAGAGGCCAGGTGANCTTGTCGGAGTGGCGATGAAG AAGCAACCCGGGCTTTCTTGGTTGCTCTGATG ANCGGCTGGCGTATATTGTTGTAA CAANTTTGTAATTTCATTTGTCACTCTCTAGTGTTAACTGGTTACG ATGCTTAATTCAAG GTTTGCTTGTCAGTTGTCACGGTGAAAAAAAAAA ] [+] EMBL AU181489 [ ATCCTNACACAAAAAGATGGAAGAACTTTGCAATCCATCCTGAACTGACTTCCAGGAAAGGTAAGATNCGGTAGTCATTTAGTGAGAGGTCAGGTGATCTTGTCGGAGTGNCGATGAAGTAAGCAACCCGGGCTTTCTTGGTTGCTCTGATGAATCGGCTGGCGTATATTGTTGTAACCAATTTTGTAATTTCATTTGTCNCTCTCTAGTGTTAACTGGTTACGAATGCTTAATTCAAG GTTTGCTTGTCAGTTGTCA AAAAAAAAAAAAA] consensusID : consensus_13615#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 926 fasta sequence [CTTGCTTTCCATACATGATTATTTATGGAGAGTGCAATTACCTACCACAAAACTAACATAATCAACTCACAAACCCACCACCTCCTCCAACTATACCATATTATACATACTTAAAAAGCGAAAGCACAACATCCCAGCTCGCTATGATAACACTGTTTACCCATTCTATCCCAACCCTATATAGACCCGATAATCTCTCTGACCCACATCGTGGCGAACAAAATACCAACACTTTCCCATGTAACCTGTCACTCCGTCTGTTTTTTTTATATATATATCTAAGAGTGTATCAGTAATCCCCCTCGAATCTTGCTCCCTCCGCGTAATATAGGCCTACAATATGACTCATTTATCTCGTGTGTGGCCCATTCTCCTTGTTTACAAACACGTGTTACAAGGGATCCATCTTACTTTGTATGGCGATAGTTTTAGGCAAACTGGCCGCCGTCAACATTAGTGCCACTGTCGATATCCTACTTAAAGTTACAAGGTTCGCCCCGGGGATGAAATGGAACCCACGGCTGGTCCATCCCAAGGTCAGCCCAATGGTGCGTAAAAAGGGTCTGTAAACTGTAAAACAATACTGGGTAGGCGGAAACCAAACTGCAGCAGCTGCAGCATGAAACAGGCGTAAATCCTAACCCCAAAGATGGAAGAACTCTGCAATCCATCCTGAACTGACTTCCAGGAAAGGTAAAATACGGGAGTCATTTAGTGAAAGGCCAGGTGATCTTGTCGGAGTGGCGATGAAAAAACAACCCGGGCTTTCTTGGTTGCTCTGATGATCGGCAGGCGTATATTGTTGTAACAATTTTGTAATTTCATTTGTCACTCTCTAGTGTTAACTGGTTACGATGCTTAATTCAAGGTTTGCTTGTCAGTTGTCCCGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL BE039860 [CTTGCTTTCCATACATGATTATTTATGGAGAGTGCAATTACCTACCACAAAACTAACATAATCAACTCACAAACCCACCACCTCCTCCAACTATACCATATTATACATACTTAAAAAGCGAAAGCACAACATCCCAGCTCGCTATGATAACACTGTTTACCCATTCTATCCCAACCCTATATAGACCCGATAATCTCTCTGACCCACATCGTGGCGAACAAAATACCAACACTTTCCCATGTAACCTGTCACTCCGTCTGTTTTTTTTATATATATATCTAAGAGTGTATCAGTAATCCCCCTCGAATCTTGCTCCCTCCGCGTAATATAGGCCTACAATATGACTCATTTATCTCGTGTGTGGCCCATTCTCCTTGTTTACAAACACGTGTTACAAGGGATCCATCTTACTTTGTATGGCGATAGTTTTAGGCAAACTGGCCGCCGTCAACATTAGTGCCACTGTCGATATCCTACTTAAAGTTACAAGGTTCGCCCCGGGGATGAAATGGAACCCACGGCTGGTCCATCCCAAGGTCAGCCCAATGGTGCGTAAAAAGGGTCTGTAAACTGTAAAACAATACTGGGTAGGCGGAAACCAAACTGCAGCAGCTGCAGCATGAAACAGGCGTAAATCCTAACCCCAAAGATGGAAGAACTCTGCAATCCATCCTGAACTGACTTCCAGGAAAGGTAAAATACGGGAGTCATTTAGTGAAAGGCCAGGTGATCTTGTCGGAGTGGCGATGAAAAAACAACCCGGGCTTTCTTGGTTGCTCTGATGATCGGCAGGCGTATATTGTTGTAACAATTTTGTAATTTCATTTGTCACTCTCTAGTGTTAACTGGTTACGATGCTTAATTCAAGGTTTGCTTGTCAGTTGTCCCGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13615#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 760 fasta sequence [GCTTCTGTGAGGCATTCGTGGTGGCATTTTCTGTCCGGGCTTTGGGTTGATCTGTTTCGCTGGATAAGCAGCCATGGCTGTGAAGGCGAGTTCTGCAGATAACAGGACCAGAAGCACCGTGTCACTATGCATAGTGATTGGCATGTGCTGCTTCTTCTACATCCTTGGGGCATGGCAGAAGAGCGGATTTGGAAAGGGGGACAGCATTGCGCTGGAGATCACGAAGCGAACGGACTGCACAATCTTGCCTAACCTTAGCTTCGACACGCACCTCGCTAAGCAGGCAAGGCCTCGCGATCTCGTTTCGCCGGCGAAGAAGTTTAAGCCGTGCCCGGATCGCTACACGGATTATACCCCTTGCCAAGATCAGAACAGAGCGATGAAGTTCCCTCGGGAGAATATGAATTACAGGGAGCGGCATTGCCCACCGCAGAAAGAGAAGCTGCACTGCCTGATACCGCCACCTAAGGGATATGTTGCTCCATTCCCATGGCCGAAAAGTCGGGACTATGTTCCTTTCGCGAATTGTCCCTATAAGAGCTTGACAGTCGAGAAAGCGATCCAGAATTGGGTTCAGTTCGAAGGCAACGTCTTCAGATTCCCTGGTGGAGGAACACAATTCCCTCAAGGAGCTGATAAGTACATCGATCAACTTGCATCAGTTGTTCCAATCGCCAATGGAACTGTCAGGACTGCATTGGACACTGGCTGTGGGGTGGCTAGTTGGGGAGCTTACTTATTAAAGAGAAATGTCTTGGCG] [+] EMBL CB657335 [GCTTCTGTGAGGCATTCGTGGTGGCATTTTCTGTCCGGGCTTTGGGTTGATCTGTTTCGCTGGATAAGCAGCCATGGCTGTGAAGGCGAGTTCTGCAGATAACAGGACCAGAAGCACCGTGTCACTATGCATAGTGATTGGCATGTGCTGCTTCTTCTACATCCTTGGGGCATGGCAGAAGAGCGGATTTGGAAAGGGGGACAGCATTGCGCTGGAGATCACGAAGCGAACGGACTGCACAATCTTGCCTAACCTTAGCTTCGACACGCACCTCGCTAAGCAGGCAAGGCCTCGCGATCTCGTTTCGCCGGCGAAGAAGTTTAAGCCGTGCCCGGATCGCTACACGGATTATACCCCTTGCCAAGATCAGAACAGAGCGATGAAGTTCCCTCGGGAGAATATGAATTACAGGGAGCGGCATTGCCCACCGCAGAAAGAGAAGCTGCACTGCCTGATACCGCCACCTAAGGGATATGTTGCTCCATTCCCATGGCCGAAAAGTCGGGACTATGTTCCTTTCGCGAATTGTCCCTATAAGAGCTTGACAGTCGAGAAAGCGATCCAGAATTGGGTTCAGTTCGAAGGCAACGTCTTCAGATTCCCTGGTGGAGGAACACAATTCCCTCAAGGAGCTGATAAGTACATCGATCAACTTGCATCAGTTGTTCCAATCGCCAATGGAACTGTCAGGACTGCATTGGACACTGGCTGTGGGGTGGCTAGTTGGGGAGCTTACTTATTAAAGAGAAATGTCTTGGCG] consensusID : consensus_13615#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [ATGGAAGAATTTTCCAATCCATCCTGAATTGATTTCCAGGAAAGGTAAAATCCGGGAGTCATTTAGTGAAAGGCCAGGTGTTTTTGTCGGAGTGGCAATAAAAAACCAACCCGGGCTTTTTTGGTTGTTTTAATGATCGGCGGGGGTATATTGTTGTACCAATTTTGTAATTTCATTTGCCCCTCTCAAGTGTTAACGGGTTACAATGCTTAATTCAAGGTTTGCTTGTCAGTTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF328069 [ATGGAAGAATTTTCCAATCCATCCTGAATTGATTTCCAGGAAAGGTAAAATCCGGGAGTCATTTAGTGAAAGGCCAGGTGTTTTTGTCGGAGTGGCAATAAAAAACCAACCCGGGCTTTTTTGGTTGTTTTAATGATCGGCGGGGGTATATTGTTGTACCAATTTTGTAATTTCATTTGCCCCTCTCAAGTGTTAACGGGTTACAATGCTTAATTCAAGGTTTGCTTGTCAGTTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13615#1 ------------------------------------------------------------ consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 ATTTTCCGCGGCGCCGCGCGTACCGTTCGTCCGTCGTCGGTGGAGTGGAGGCTGCCGAAC 60 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 ------------------------------------------------------------ consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 TGTAAAGCTCACGGGTTGGGCGAATCTCCACTCCTCACTCGCCCCCCACTGAAATCGCCA 120 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 ------------------------------------------------------------ consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 AAAACCCAACTGAAAAACCCCCCCACCGGAATCCTCACGCACACACCTCGCCGCGGAAGC 180 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 ------------------------------------------------------------ consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 TGTGGCGTCCGCGTAGGAGCAGCTGTTTCTTTTTTGGATCCAATCCAATCGGATAAGCAG 240 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 ------------------------------------------------------------ consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 CCATGGCTGTGAAGGCGAGTTCTGCAGATAACAGGACCAGAAGCACCGTGTCACTATGCA 300 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 ------------------------------------------------------------ consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 TAGTGATTGGCATGTGCTGCTTCTTCTACATCCTTGGGGCATGGCAGAAGAGCGGATTTG 360 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 ------------------------------------------------------------ consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 GAAAGGGGGACAGCATTGCGCTGGAGATCACGAAGCGAACGGACTGCACAATCTTGCCTA 420 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 ------------------------------------------------------------ consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 ACCTTAGCTTCGACACGCACCTCGCTAAGCAGGCAAGGCCTCGCGATCTCGTTTCGCCGG 480 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 ------------------------------------------------------------ consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 CGAAGAAGTTTAAGCCGTGCCCGGATCGCTACACGGATTATACCCCTTGCCAAGATCAGA 540 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 ------------------------------------------------------------ consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 ACAGAGCGATGAAGTTCCCTCGGGAGAATATGAATTACAGGGAGCGGCATTGCCCACCGC 600 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 ------------------------------------------------------------ consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 AGAAAGAGAAGCTGCACTGCCTGATACCGCCACCTAAGGGATATGTTGCTCCATTCCCAT 660 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 ------------------------------------------------------------ consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 GGCCGAAAAGTCGGGACTATGTTCCTTTCGCGAATTGTCCCTATAAGAGCTTGACAGTCG 720 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 ------------------------------------------------------------ consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 AGAAAGCGATCCAGAATTGGGTTCAGTTCGAAGGCAACGTCTTCAGATTCCCTGGTGGAG 780 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 ------------------------------------------------------------ consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 GAACACAATTCCCTCAAGGAGCTGATAAGTACATCGATCAACTTGCATCAGTTGTTCCAA 840 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 ------------------------------------------------------------ consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 TCGCCAATGGAACTGTCAGGACTGCATTGGACACTGGCTGTGGGGTGGCTAGTTGGGGAG 900 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 ------------------------------------------------------------ consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 CTTACTTATTAAAGAGAAATGTCTTGGCGATGTCATTTGCGCCAAGAGATTCACACGAGG 960 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 ------------------------------------------------------------ consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 CACAAGTGCAGTTTGCTCTGGAGAGGGGTGTCCCAGCTGTTATCGGTGTTCTTGGGACGA 1020 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 ------------------------------------------------------------ consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 TAAAACTCCCTTACCCATCAAGAGCCTTTGACATGGCCCATTGTTCCAGGTGTTTGATTC 1080 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 ------------------------------------------------------------ consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 CATGGGGAGCAAATGGTGGAATATACATGATGGAAGTTGATAGGGTTCTAAGACCTGGTG 1140 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 ------------------------------------------------------------ consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 GATACTGGGTGCTTTCAGGGCCTCCGATTAATTGGAAAGTGAACTACAAGGGTTGGCAGC 1200 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 ------------------------------------------------------------ consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 GTACAAAGAAAGATCTTGAGGCGGAGCAGAATGAAATAGAGGAAATTGCTGACCTTCTTT 1260 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 ------------------------------------------------------------ consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 GTTGGGAAAAAGTCAAAGAGATTGGTGAGATGGCAATATGGAGGAAAAGATTAAACACTG 1320 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 ------------------------------------------------------------ consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 AGTCTTGTCCCTCTAGGCAAGATGAATCAAGTGTGCAGATGTGTGACTCAACAAATGCAG 1380 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 ---------------------------------------------------CTTGCTTTC 9 consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 ATGATGTCTGGTACAAGAAGATGAAGCCTTGTGTGACACCTATTCCTGATGTAAATGATC 1440 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 CATACATGATTATTTATGGAGAGTGCAATTACCTACCA--CAAAACTAACATAATCAACT 67 consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 CAAGTGAAGTTGCTGGAGGTGCAATCAAGCCCTTCCCAAGCAGGCTCAATGCAGTTCCTC 1500 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 CACAAACCCACCACCTCCT----CCAACTATACCATATTATACATAC----------TTA 113 consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 CAAGGATTGCTAATGGCCTGATTCCAGGTGTTTCATCTCAGGCCTACCAGAAAGACATCA 1560 consensus_13615#2 ------------------------------------------------------------ consensus_13615#1 AAAAGCGAAAGCACAACATCCCAGCTCGCTATGATAACACTGTTTACCCATTCT------ 167 consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 AAATGTGGAAGAAGCATGTCAAGGCTTATAGCAGTGTGAACAAGTACCTCCTCACTGGAA 1620 consensus_13615#2 -------------GCTTCTGTGAGGCATTCGTGGTGGCATTTTCTGTCCGGGCTTTGGGT 47 consensus_13615#1 -ATCCCAACCCTATATAGACCCGATAATCTCTCTGACCCACATCGTGGCGAACA--A--- 221 consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 GATACAGAAACATTATGGACATGAATGCAGGTTTTGGAGGATTTGCTGCTGCCATTG--- 1677 consensus_13615#2 TGATCTGTTTCGCTGGATAAGCAGCCATGGCTGTGAAGGCGAGTTCTGCAGATAACAGGA 107 consensus_13615#1 --AATACCAACACTTTCCCATGTAACCTGTCACTCCGTCTGTTTTTTTTATATATA---- 275 consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 --AGTCCCCAAAATCTTGGGTGATGAATGCCGTGCCTACGATTTCAAAGATGTCAACTCT 1735 consensus_13615#2 CCAGAAGCACCGTGTCACTATGCATAGTGATTGGCATGTGCTGCTTCTTCTACATCCTTG 167 consensus_13615#1 ------TATCTAAGAGTG-----TATCAGTAATCCCCCTCGAATCTTGCTCCCTCCGCGT 324 consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 AGGGGCTATTTACGAGCGAGGATTGATTGGCATATACCACGACTGGTGCGAAGCTTTCTC 1795 consensus_13615#2 GGGCATGGCAGAAGAGCGGATTTGGAAAGGGGGACAGCATTGCGCTGGAGATCACGAAGC 227 consensus_13615#1 AATATAGGCCTACAATATGACTCATTTATCTCGTGTGTGGCCCATTCTCCTTGTTTACAA 384 consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 TACTTAC-CCAAGAACGTATGATCTTATCCACGCTAGTGGCCTTTTCACCCTGTACAAAA 1854 consensus_13615#2 GAACGGACTGCACAATCTTGCCTA---ACCTTAGCTTCGACACGCACCTCGC---TAAGC 281 consensus_13615#1 ACACGTGTTACAAGGGATCCATCTTACTTTGTATGGCGATAGTTTTAGGCAAACTGGCCG 444 consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 ACAAGTGCAACATGGAAGACATCCTACTGGAGATGGACCGCGTCCTGAGGCCAGAAGGCG 1914 consensus_13615#2 AGGCAAGGCCTCGCGATCTCGTTTCGCCGGCGAAGAAGTTTAAGCCGTGCC--CGGATCG 339 consensus_13615#1 CCGTCAACATTAGTGCCACTGTCGATATCCTACTTAAAGTTACAAGGTTCGCCCCGGGGA 504 consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 CCGTCATAATGAGGGACGATGTCGATATCCTGACGAAGGTGAACAGGCTCGCCCTCGGCA 1974 consensus_13615#2 CTACACGGATTATACCCCTTGCCAAGATCAGAAC-AGAGCGATGAAGTTCCCTCGGGAGA 398 consensus_13615#1 TGAAATGGAACCCACGGCTGGTCCATCCCAAGGTCAGCCCAATGGTGCGTAAAAAGGGTC 564 consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 TGAAATGGAACACGAGGCTGGTCGATCACGAGGACGGCCCCATGGTGCGTGAGAAGGTGC 2034 consensus_13615#2 ATATGAATTACAGGGAGCGGCATTGCCCACCGCAGAAAGAGAAGCTGCACTGCCTGATAC 458 consensus_13615#1 TGTAAACTGTAAAACAATACTGGGTAGGCGGAAACCAAACTGCAGCAGCTGCAGCATGAA 624 consensus_13615#3 ------------------------------------------------------------ consensus_13615#0 TGTATGCTGTGAAGCAGTACTGGGTAGGCGGAAACCAGACTGCAGCAGCTGCAGCATGAA 2094 consensus_13615#2 CGCCACCTAAGGGATA----TGTTGCTCCATTCCCATGGCCGAAAAGTCGGGACTATGTT 514 consensus_13615#1 ACAGGCGTAAATCCTAACCCCAAAGATGGAAGAACTCTGCAATCCATCCTGAACTGACTT 684 consensus_13615#3 -------------------------ATGGAAGAATTTTCCAATCCATCCTGAATTGATTT 35 consensus_13615#0 GCAGGCGTAAATCCTAACACAAAAGATGGAAGAACTCTGCAATCCATCCTGAACTGACTT 2154 consensus_13615#2 CCTTTCGCGAATTGTCCCTATAAGAGCTTGACAGTCGAGAAAGCGATCCAGAATTGGGTT 574 * * ** * **** *** ** ** consensus_13615#1 CCAGG-AAAGGTAAAATACGGGAGTCATTTAGTGAAAGGCCAGGTGATCTTGTCGGAGTG 743 consensus_13615#3 CCAGG-AAAGGTAAAATCCGGGAGTCATTTAGTGAAAGGCCAGGTGTTTTTGTCGGAGTG 94 consensus_13615#0 CCAGG-AAAGGTAAGATACGGGAGTCATTTAGTGAGAGGCCAGGTGATCTTGTCGGAGTG 2213 consensus_13615#2 CAGTTCGAAGGCAACGTCTTCAGATTCCCTGGTGGAGGAACA--CAATTCCCTCAAGGAG 632 * **** ** * * * *** * ** * ** * * consensus_13615#1 GCGATGAAAAAACAACCCGGGCTTTCTTGGTTGCTCTGATGATCGGCAGGCGTATATTGT 803 consensus_13615#3 GCAATAAAAAACCAACCCGGGCTTTTTTGGTTGTTTTAATGATCGGCGGGGGTATATTGT 154 consensus_13615#0 GCGATGAAGAAGCAACCCGGGCTTTCTTGGTTGCTCTGATGATCGGCTGGCGTATATTGT 2273 consensus_13615#2 CTGATAAGTACATCGATCAACTTGCATCAGTTGTTCCAATCGCCAATGGA-----ACTGT 687 ** * * * * * **** * ** * * * *** consensus_13615#1 TGTAACAATTTTGTAATTTCATTTGTCACTCTCTAGTGTTAACTGGTTACGATGCTTAAT 863 consensus_13615#3 TGTACCAATTTTGTAATTTCATTTGCCCCTCTCAAGTGTTAACGGGTTACAATGCTTAAT 214 consensus_13615#0 TGTAACAATTTTGTAATTTCATTTGTCACTCTCTAGTGTTAACTGGTTACGATGCTTAAT 2333 consensus_13615#2 CAGGACTGCATTGGACACTGGCTGTGGGGTGGCTAGT-TGGGGAGCTTAC--TTATTAAA 744 * *** * * * * * *** * * **** * **** consensus_13615#1 TCAAGGTTTGCTTGTCAGTTGTCCCGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 923 consensus_13615#3 TCAAGGTTTGCTTGTCAGTTGTCA----AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 270 consensus_13615#0 TCAAGGTTTGCTTGTCAGTTGTCACGGTGAAAAAAAAAAAAA------------------ 2375 consensus_13615#2 GAGAAATGT-CTTGGCG------------------------------------------- 760 * * * **** * consensus_13615#1 AAA 926 consensus_13615#3 AAA 273 consensus_13615#0 --- consensus_13615#2 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||