These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13625#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1274 fasta sequence [AATCCACGCGCATTCCACACCACCCAACCAGCGAGAGAGAGATGGCGGCGCTCCACCACCAGGC-GGCGGCGGCGCCGGTGACGACGACGACGGACGGGGGCGAGCTGCGGGCGATGGACCTGTACGAGAAGCTGGAGAAGGTCGGGGAGGGGACGTACGGGAAGGTGTACAAGGCGCGGGAGAAGGCGACGGGGCGGATCGTGGCGCTGAAGAAGACGCGGCTGCCGGAGGACGACGAGGGCGTGCCGCCGACGGCGCTCAGGGAGGTGTCGCTGCTGCGGATGCTGTCGCAGGACTCGCACGTGGTGCGCCTGCTGGACCTCAAGCAGGGGCAGAACAAGGAGGGCCAGACCATCCTCTACCTCGTCTTCGAGTACATGGACACCGACCTCAAGAAGTTCATCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGATCCTGATGTACCAGCTCTGCAAGGGCGTTGC-TTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCATGG-ACCGCAAG-ACCATGGCG-CTCAAGATCG-CCGACCTCGGGCT-CAGCCG-CTCGTTCA-CTGTCCCTCTCAA-GAAGTACACCCA-CGAGATCCTGACGCTGTGGTACAGGGCTCCCGAGGTTCTTCTTGGCGCGGCACACTACTCCACTCCGGTTGACATCTGGTCTGT-GGGCTGCATTTTTGCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGCAGCTTCTGCACATTTTCAAGTTGCTGGGCACCCCAAATGAGCAAGTTTGGCCAGGAGTGAGCAAGCTACCTAACTGGCACGAGTACCCCCAGTGGAATCCCTCGAAAGTGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGGAGCATCCCTACTTCAACGACGTGAACAAGGAGCTCTACTGAAGGTCGATTGATGATGTTCACCACCAAGGAAAAAAAAACGTTGTGCGTCTTCGTGACTAGCCTGCCCTGAAGCATTGCTTTTGCTTCTAGGGGGAAAAGTACTGTTTGTGTCTGTTTCCTGGATGCTGCTTAGTGTGCTTAAGAATTCACTTGTTTGTGATGGTAATGAGTAATGACTTAAGAATTCGACAAAATCTGTGTGTTTATATGTTTCATAAGTCGATCAGTTTTCTTGGGGGGGGCCGCGGTACC] [+] EMBL AK059682 [AATCCACGCGCATTCCACACCACCCAACCAGCGAGAGAGAGATGGCGGCGCTCCACCACCAGGC GGCGGCGGCGCCGGTGACGACGACGACGGACGGGGGCGAGCTGCGGGCGATGGACCTGTACGGGAAGCTGGAGAAGGTCGGGGAGGGGACGTACGGGAAGGTGTACAAGGCGCGGGAGAAGGCGACGGGGCGGATCGTGGCGCTGAAGAAGACGCGGCTGCCGGAGGACGACGAGGGCGTGCCGCCGACGGCGCTCAGGGAGGTGTCGCTGCTGCGGATGCTGTCGCAGGACTCGCACGTGGTGCGCCTGCTGGACCTCAAGCAGGGGCAGAACAAGGAGGGCCAGACCATCCTCTACCTCGTCTTCGAGTACATGGACACCGACCTCAAGAAGTTCATCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGATCCTGATGTACCAGCTCTGCAAGGGCGTTGC TTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCATGG ACCGCAAG ACCATGGCG CTCAAGATCG CCGACCTCGGGCT CAGCCG CTCGTTCA CTGTCCCTCTCAA GAAGTACACCCA CGAGATCCTGACGCTGTGGTACAGGGCTCCCGAGGTTCTTCTTGGCGCGGCACACTACTCCACTCCGGTTGACATCTGGTCTGT GGGCTGCATTTTTGCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGCAGCTTCTGCACATTTTCAAGTTGCTGGGCACCCCAAATGAGCAAGTTTGGCCAGGAGTGAGCAAGCTACCTAACTGGCACGAGTACCCCCAGTGGAATCCCTCGAAAGTGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGGAGCATCCCTACTTCAACGACGTGAACAAGGAGCTCTACTGAAGGTCGATTGATGATGTTCACCACCAAGGAAAAAAAAACGTTGTGCGTCTTCGTGACTAGCCTGCCCTGAAGCATTGCTTTTGCTTCTAGGGGGAAAAGTACTGTTTGTGTCTGTTTCCTGGATGCTGCTTAGTGTGCTTAAGAATTCACTTGTTTGTGATGGTAATGAGTAATGACTTA ] [+] EMBL CA753635 [ CACCACCCAACCAGCGAGAGAGAGATGGCGGCGCTCCACCACCAGGC GGCGGCGGCGCCGGTGACGACGACGACGGACGGGGGCGAGCTGCGGGCGATGGACCTGTACGAGAAGCTGGAGAAGGTCGGGGAGGGGACGTACGGGAAGGTGTACAAGGCGCGGGAGAAGGCGACGGGGCGGATCGTGGCGCTGAAGAAGACGCGGCTGCCGGAGGACGACGAGGGCGTGCCGCCGACGGCGCTCAGGGAGGTGTCGCTGCTGCGGATGCTGTCGCAGGACTCGCACGTGGTGCGCCTGCTGGACCTCAAGCAGGGGCAGAACAAGGAGGGCCAGACCATCCTCTACCTCGTCTTCGAGTACATGGACACCGACCTCAAGAAGTTCATCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCATGGAACCGCAAGAACCTTGGCGCCTCCAGATCGCCCGACCTCGGGCTCCAGCGGCCTGGTTCACCTGTCCCTCTCAAGGAAGTACACCCAGCGAGAT ] [+] EMBL CB659407 [ ACCAGCGAGAGAGAGATGGCGGCGCTCCACCACCAGGC GGCGGCGGCGCCGGTGACGACGACGACGGACGGGGGCGAGCTGCGGGCGATGGACCTGTACGAGAAGCTGGAGAAGGTCGGGGAGGGGACGTACGGGAAGGTGTACAAGGCGCGGGAGAAGGCGACGGGGCGGATCGTGGCGCTGAAGAAGACGCGGCTGCCGGAGGACGACGAGGGCGTGCCGCCGACGGCGCTCAGGGAGGTGTCGCTGCTGCGGATGCTGTCGCAGGACTCGCACGTGGTGCGCCTGCTGGACCTCAAGCAGGGGCAGAACAAGGAGGGCCAGACCATCCTCTACCTCGTCTTCGAGTACATGGACACCGACCTCAAGAAGTTCATCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGATCCTGATGTACCAGCTCTGCAAGGGCGTTGC TTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCATGG ACCGCAAG ACCATGGCG CTCAAGATCG CCGACCTCGGGCT CAGCCG CTCGTTCA CTGTCCCTCTCAA GAAGTACACCCA CGAGATCCTGACGCTGTGGTACAGGGCTCCCGAGGTTCTTCTTGGCGCGGCACACTACTCCACTCCGGTTGACATCTGGTCTGT GGGCTGCATTTTTGCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGCAGCTTCTGCACATTTTCAAGTT ] [+] EMBL OSSS22411 [ ACCACCAGGC GGCGGCGGCGCCGGTGACGACGACGACGGACGGGGGCGAGCTGCGGGCGATGGACCTGTACGAGAAGCTGGAGAAGGTCGGGGAGGGGACGTACGGGAAGGTGTACAAGGCGCGGGAGAAGGCGACGGGGCGGATCGTGGCGCTGAAGAAGACGCGGCTGCCGGAGGACGACGAGGGCGTGCCGCCGACGGCGCTCAGGGAGGTGTCGCTGCTGCGGATGCTGTCGCAGGACTCGCACGTGGTGCGCCTGCTGGACCTCAAGCAGGGGCAGAACAAGGAGGGCCAGACCATCCTCTACCTCGTCTTCGAGTACATGGACACCGACCTCAAGAAGTTCATCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGATCCTGATGTACCAGCTCTGCAAGGGCGTTGC TTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCATGG ACCGCAAG ACCATGGCG CTCAAGATCG CCGACCTCGGGCT CAGCCG CTCGTTCA CTGTCCCTCTCAA GAAGTACACCCA CGAGATCCTGACGCTGTGGTACAGGGCTCCCGAGGTTCTTCTTGGCGCGGCACACTACTCCACTCCGGTTGACATCTGGTCTGT GGGCTGCATTTTTGCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGCAGCTTCTGCACATTTTCAAGTTGCTGGGCACCCCAAATGAGCAAGTTTGGCCAGGAGTGAGCAAGCTACCTAACTGGCACGAGTACCCCCAGTGGAATCCCTCGAAAGTGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGGAGCATCCCTACTTCAACGACGTGAACAAGGAGCTCTACTGAAGGTCGATTGATGATGTTCACCACCAAGGAAAAAAAAACGTTGTGCGTCTTCGTGACTAGCCTGCCCTGAAGCATTGCTTTTGCTTTTAGGGGGAAAAGTACTGTTTGTGTCTGTTTCCTGGATGCTGCTTAGTGTGCTTAAGAATTCACTTGTTTGTGATGGTAATGAGTAATGACTTA ] [+] EMBL D43500 [ ACCACCAGGCGGGCGGCGGCG CGGTNACGACGACGACGGACGGGGGCGAGCTNCGGGCGATNGACCTNTACGAGAAGCTNGAGAAGGTCGGGGAGGGGACGTACGGGAAGGTGTACAAAGCGCGGGAGAAGGCGAC ] [+] EMBL AU032803 [ GTACATGGACACCGACCTCAAGAAGTTCATCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGATCCTGATGTACCAGCTCTGCAAGGGCGTTGC TTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCATGG ACCGCAAG ACCATGGCG CTCAAGATCG CCGACCTCGGGCT CAGCCG CTCGTTCA CTGTCCCTCTCAA GAAGTACACCCA CGAGATCCTGACGCTGTGGTACAGGGCTCCCGAGGTTCTTNTTGGCGCGGCACACTACTTCACTNCGGTTGACATCTGGTCTGTGGGGCTGCATTTTTGCTGAGTTGGNCAC ] [-] EMBL CB659408 [ CGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGATCCTGATGTACCAGCTCTGCAAGGGCGTTGC TTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCATGG ACCGCAAG ACCATGGCG CTCAAGATCG CCGACCTCGGGCT CAGCCG CTCGTTCA CTGTCCCTCTCAA GAAGTACACCCA CGAGATCCTGACGCTGTGGTACAGGGCTCCCGAGGTTCTTCTTGGCGCGGCACACTACTCCACTCCGGTTGACATCTGGTCTGT GGGCTGCATTTTTGCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGCAGCTTCTGCACATTTTCAAGTTGCTGGGCACCCCAAATGAGCAAGTTTGGCCAGGAGTGAGCAAGCTACCTAACTGGCACGAGTACCCCCAGTGGAATCCCTCGAAAGTGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGGAGCATCCCTACTTCAACGACGTGAACAAGGAGCTCTACTGAAGGTCGATTGATGATGTTCACCACCAAGGAAAAAAAAACGTTGTGCGTCTTCGTGACTAGCCTGCCCTGAAGCATTGCTTTTGCTTCTAGGGGGAAAAGTACTGTTTGTGTCTGTTTCCTGGATGCTGCTTAGTGTGCTTAAGAATTCACTTGTTTGTGATGGTAATGAGTAATGACTTAAGAATTCGACAAAATCTGTGTGTTTATATGTTTCATAAGTCGATCAGTTTTCTTGGGGGGGGCCGCGGTACC] [-] EMBL CF326824 [ CGCTGTGGTACAGGGCTCCCGAGGTTCTTCTTGGCGCGGCACACTACTCCACTCCGGTTGACATCTGGTCTGT GGGCTGCATTTTTGCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGCAGCTCCTGCACATTTTCAAGTTGCTGGGCACCCCAAATGAGCAAGTTTGGCCAGGAGTGAGCAAGCTACCTAACTGGCACGAGTACCCCCAGTGGAATCCCTCGAAAGTGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTTTGCGAAGAAGGCCATGGAGCATCCCTACTTCAACGACGTGAACAAGGAGCTCTACTGAAGGTCGATTGATGATGTTCACCACCAAGGAAAAAAAAACGTTGTGCGTCTTCGTGACTAGCCTGCCCTGAAGCATTGCTTTTGCTTCTAGGGGGAAAAGTACTGTTTGTGTCTGTTTCCTGGATGCTGCTTAGTGTGCTTAAGAATTCACTTGTTTGTGATGGTAATGAGTAATGACTTAAGAATTCGACAAAA ] consensusID : consensus_13625#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 827 fasta sequence [AGGAGACGACGCGCCGCCACCCACCCACTCGACCGTTGCCACCGCTGCTTCCCTTCCCCTTTCCANNGGCCCTNCNGCCNNTGGTCCNNCCCCATTTNAANTNCNCCCCCCCCACACACACCCCCTTCCACCGCCGCCACCGCCGCCGAATCTAGGGTTCATCGGGGATTCGGGATCGATGGAGAAGTACGAGAAGCTGGAGAAGGTNGGGGAAGGGACGTACGGGAAGGTGTACAAGGCGCAGGACAGGGCGACGGGGCAGCTGGTGGCGCTGAAGAAGACGAGGCTGGAGATGGACGAGGAGGGGATCCCGCCCACCGCGCTGCGCGAGATCTCCATCCTCAGGCTGCTCTCCCAGTCGCTCTACGTCGTCCGCCTCCTCTCCGTCGAGCAGGCCACCAAGAACGGCAAGCCCGTCCTCTACCTCGTCTTCGAGTTCCTCGACACCGACCTCAAGAAGTTCGTCGACGCCTACCGCAAGGGCCCCAACCCTCGCCCCCTCCCCACCAACGTCATCAAGAGCTTCTTGTATCAGTTATGCAAAGGAGTCGCACATTGCCATGGCCATGGTGTCCTTCACCGTGATTTAAAGCCACAAAACCTGTTGGTCGACAAGGAAAAGGGGATATTGAAAATTGCTGATCTTGGGCTAGGTAGGGCGTTCACTGTTCCTATGAAAAGCTACACACATGAGATTGTGACTCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGATCAACACATTACTCAACCGGTGTTGACATTTGGTCCGTTGGTTGCATCTTCGCTGAAATGGTCAGAAAACAAGCTCTTTTTCCAGGTGACT] [+] EMBL C22365 [AGGAGACGACGCGCCGCCACCCACCCACTCGACCGTTGCCACCGCTGCTTCCCTTCCCCTTTCCANNGGCCCTNCNGCCNNTGGTCCNNCCCCATTTNAANTNCNCCCCCCCCACACACACCCCCTTCCACCGCCGCCACCGCCGCCGAATCTAGGGTTCATCGGGGATTCGGGATCGATGGAGAAGTACGAGAAGCTGGAGAAGGTNGGGGAAGGGACGTACGGGAAGGTGTACAAGGCGCAGGACAGGGCGACGGGGCAGCTGGTGGCGCTGAAGAAGACGAGGCTGGAGATGGACGAGGAGGGG ] [+] EMBL BP184590 [ ACAAGGCGCAGGACAGGGCGACGGGGCAGCTGGTGGCGCTGAAGAAGACGAGGCTGGAGATGGACGAGGAGGGGATCCCGCCCACCGCGCTGCGCGAGATCTCCATCCTCAGGCTGCTCTCCCAGTCGCTCTACGTCGTCCGCCTCCTCTCCGTCGAGCAGGCCACCAAGAACGGCAAGCCCGTCCTCTACCTCGTCTTCGAGTTCCTCGACACCGACCTCAAGAAGTTCGTCGACGCCTACCGCAAGGGCCCCAACCCTCGCCCCCTCCCCACCAACGTCATCAAGAGCTTCTTGTATCAGTTATGCAAAGGAGTCGCACATTGCCATGGCCATGGTGTCCTTCACCGTGATTTAAAGCCACAAAACCTGTTGGTCGACAAGGAAAAGGGGATATTGAAAATTGCTGATCTTGGGCTAGGTAGGGCGTTCACTGTTCCTATGAAAAGCTACACACATGAGATTGTGACTCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGATCAACACATTACTCAACCGGTGTTGACATTTGGTCCGTTGGTTGCATCTTCGCTGAAATGGTCAGAAAACAAGCTCTTTTTCCAGGTGACT] consensusID : consensus_13625#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [CTGAAGGAGTAGAAAACCCAACCAGCGAGAGAGAGATGGCGGCGCTCCACCACCAGGCGGCGGCGGCGCCGGTGACGACGACGACGGACGGGGGCGAGCTGCGGGCGATGGACCTGTACGATAAGCTGGAGAAGGTCGGGGAGGGGACGTACGGGAAGGTGTACAAGGCGCGGGAGAAGGCGACGGGGCGGATCGTGGCGCTGAAGAAGACGCGGCTGCCGGAGGACGACGAGGGCGTGCCGCCGACGGCGCTCAGGGAGGTGTCGCTGCTGCGGATGCTGTCGCAGGACTCGCACGTGGTGCGCCTGCTGGACCTCAAGCAGGGGCAGAACAAGGAGGGCCAGACCATCCTCTACCTCGTCTTCGAGTACATGGACACCGACCTCAAGAAGTTCATCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCATGGACCGCAAGACCATGGCGCTCAAGATCGCCGACCTCGGGCTCAGCCGCTCGTTCACTGTCCCTCTC] [+] EMBL CF326823 [CTGAAGGAGTAGAAAACCCAACCAGCGAGAGAGAGATGGCGGCGCTCCACCACCAGGCGGCGGCGGCGCCGGTGACGACGACGACGGACGGGGGCGAGCTGCGGGCGATGGACCTGTACGATAAGCTGGAGAAGGTCGGGGAGGGGACGTACGGGAAGGTGTACAAGGCGCGGGAGAAGGCGACGGGGCGGATCGTGGCGCTGAAGAAGACGCGGCTGCCGGAGGACGACGAGGGCGTGCCGCCGACGGCGCTCAGGGAGGTGTCGCTGCTGCGGATGCTGTCGCAGGACTCGCACGTGGTGCGCCTGCTGGACCTCAAGCAGGGGCAGAACAAGGAGGGCCAGACCATCCTCTACCTCGTCTTCGAGTACATGGACACCGACCTCAAGAAGTTCATCCGCGCCCACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCGTCAAGATCCTGATGTACCAGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCATGGACCGCAAGACCATGGCGCTCAAGATCGCCGACCTCGGGCTCAGCCGCTCGTTCACTGTCCCTCTC] consensusID : consensus_13625#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [GNCNTCGGCACGGGGGCTTCTGCNCATATAGNGAGTTGCTGGGCACCCCAANTGNGCAAGTTTGGCCAGGNGNGAGCAAGCTACCTAACTGGCACGNGTACCCCCAGTGGAATCCCTCGAAAGTGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGGAGCATCCCTACTTCAACGACGTGAACAAGGAGCTCTACTGAAGGTCGATTGATGATGTTCACCACCAAGGAAAAAAAAAACGTTGTGCGTCTTCGTGACTAGCCTGCCCTGAAGCATTGCTTTTGCTTCTAGGGGGAAAAGTACTGTTTGTGTCTGTTTCCTGGATGCTGCTTANTGTGCTTAANAAT] [+] EMBL AA752741 [GNCNTCGGCACGGGGGCTTCTGCNCATATAGNGAGTTGCTGGGCACCCCAANTGNGCAAGTTTGGCCAGGNGNGAGCAAGCTACCTAACTGGCACGNGTACCCCCAGTGGAATCCCTCGAAAGTGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGGAGCATCCCTACTTCAACGACGTGAACAAGGAGCTCTACTGAAGGTCGATTGATGATGTTCACCACCAAGGAAAAAAAAAACGTTGTGCGTCTTCGTGACTAGCCTGCCCTGAAGCATTGCTTTTGCTTCTAGGGGGAAAAGTACTGTTTGTGTCTGTTTCCTGGATGCTGCTTANTGTGCTTAANAAT] consensusID : consensus_13625#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence [CCCCNCCCAGGGAAAAAAAAAACGTTTGTGCCGTCTTCGNGACTAGCCTGCCCCTGAAGCATTGCTTTTGCTCCTAGGGGAAAAAGTACTGTTNGTGTCTGTTTCCCTGGATGCTGCTTAGTGTGCTTAAGAATTCACTTGTTTGTGATGGTAATGAGTAATGACTTAAGAATTCGACAAAATCTGTGTGTTTATATGTTTCATAAGTCGATCAGTTTTCTTGTTTGGTTTTGTTTGTTGTCGTTAATTCGTCAAGTCNGTCAGCNNGTTNTGTGNGAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C22633 [CCCCNCCCAGGGAAAAAAAAAACGTTTGTGCCGTCTTCGNGACTAGCCTGCCCCTGAAGCATTGCTTTTGCTCCTAGGGGAAAAAGTACTGTTNGTGTCTGTTTCCCTGGATGCTGCTTAGTGTGCTTAAGAATTCACTTGTTTGTGATGGTAATGAGTAATGACTTAAGAATTCGACAAAATCTGTGTGTTTATATGTTTCATAAGTCGATCAGTTTTCTTGTTTGGTTTTGTTTGTTGTCGTTAATTCGTCAAGTCNGTCAGCNNGTTNTGTGNGAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13625#3 ------------------------------------------------------------ consensus_13625#4 ------------------------------------------------------------ consensus_13625#0 AATCCACGCGCATTCCACACCACCCAACCAGCGAGAGAGAGATGGCGGCGCTCCACCACC 60 consensus_13625#1 ------------------------------------------------------------ consensus_13625#2 ------------------------------------------------------------ consensus_13625#3 ------------------------------------------------------------ consensus_13625#4 ------------------------------------------------------------ consensus_13625#0 AGGCGGCGGCGGCGCCGGTGACGACGACGACGGACGGGGGCGAGCTGCGGGCGATGGACC 120 consensus_13625#1 ------------------------------------------------------------ consensus_13625#2 ------------------------------------------------------------ consensus_13625#3 ------------------------------------------------------------ consensus_13625#4 ------------------------------------------------------------ consensus_13625#0 TGTACGAGAAGCTGGAGAAGGTCGGGGAGGGGACGTACGGGAAGGTGTACAAGGCGCGGG 180 consensus_13625#1 ------------------------------------------------------------ consensus_13625#2 ------------------------------------------------------------ consensus_13625#3 ------------------------------------------------------------ consensus_13625#4 ------------------------------------------------------------ consensus_13625#0 AGAAGGCGACGGGGCGGATCGTGGCGCTGAAGAAGACGCGGCTGCCGGAGGACGACGAGG 240 consensus_13625#1 ------------------------------------------------------------ consensus_13625#2 ------------------------------------------------------------ consensus_13625#3 ------------------------------------------------------------ consensus_13625#4 ------------------------------------------------------------ consensus_13625#0 GCGTGCCGCCGACGGCGCTCAGGGAGGTGTCGCTGCTGCGGATGCTGTCGCAGGACTCGC 300 consensus_13625#1 ------------------------------------------------------------ consensus_13625#2 ------------------------------------------------------------ consensus_13625#3 ------------------------------------------------------------ consensus_13625#4 ------------------------------------------------------------ consensus_13625#0 ACGTGGTGCGCCTGCTGGACCTCAAGCAGGGGCAGAACAAGGAGGGCCAGACCATCCTCT 360 consensus_13625#1 ------------------------------------------------------------ consensus_13625#2 ------------------------------------------------------------ consensus_13625#3 ------------------------------------------------------------ consensus_13625#4 ------------------------------------------------------------ consensus_13625#0 ACCTCGTCTTCGAGTACATGGACACCGACCTCAAGAAGTTCATCCGCGCCCACCGCCAGA 420 consensus_13625#1 ------------------------------------------------------------ consensus_13625#2 ------------------------------------------------------------ consensus_13625#3 ------------------------------------------------------------ consensus_13625#4 ------------------------------------------------------------ consensus_13625#0 ATCTCCAGAAGATCCCCGTGCCCACCGTCAAGATCCTGATGTACCAGCTCTGCAAGGGCG 480 consensus_13625#1 ------------------------------------------------------------ consensus_13625#2 ------------------------------------------------------------ consensus_13625#3 ------------------------------------------------------------ consensus_13625#4 ------------------------------------------------------------ consensus_13625#0 TTGCTTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGCCGCATAACCTGCTCA 540 consensus_13625#1 ------------------------------------------------------------ consensus_13625#2 ------------------------------------------------------------ consensus_13625#3 ------------------------------------------------------------ consensus_13625#4 ------------------------------------------------------------ consensus_13625#0 TGGACCGCAAGACCATGGCGCTCAAGATCGCCGACCTCGGGCTCAGCCGCTCGTTCACTG 600 consensus_13625#1 ------------------------------------------------------------ consensus_13625#2 ------------------------------------------------------------ consensus_13625#3 ------------------------------------------------------------ consensus_13625#4 ------------------------------------------------------------ consensus_13625#0 TCCCTCTCAAGAAGTACACCCACGAGATCCTGACGCTGTGGTACAGGGCTCCCGAGGTTC 660 consensus_13625#1 -----------------------------------------------------------A 1 consensus_13625#2 ------------------------------------------------------------ consensus_13625#3 ------------------------------------------------------------ consensus_13625#4 ------------------------------------------------------------ consensus_13625#0 TTCTTGGCGCGGCACACTACTCCACTCCGGTTGACATCTGGTCTGTGGGCTGCATTTTTG 720 consensus_13625#1 GGAGACGACGCGCCGCCACCCACCCACTCGACCGTTGCCACCGCTGCTTCCCTTCCCCTT 61 consensus_13625#2 ------------------------------------------------------------ consensus_13625#3 -----------------------------GNCNTCGGCACGGGG--------GCTTCTGC 23 consensus_13625#4 -------------------------CCCCNCCCAGGGAAAAAAAAAAC----GTTTGTGC 31 consensus_13625#0 CTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGCAGCTTCTGC 780 consensus_13625#1 TCCANNGGCCCTNCNGCCNNTGGTCCNNCCCCATTTNAANTNCNCCCCCCCCACACACAC 121 consensus_13625#2 ---------CTGAAGGAGTAGAAAACCCAACCAGCGAGAGAGAGATGGCGGCGCTC-CAC 50 * consensus_13625#3 NCATATAGNGAGTTGCTGGGCACCCCAAN----------TGNGCAAGTTTGGCCAGGNGN 73 consensus_13625#4 CGTCTTCGNGACTAGCCTG---CCCCTGA----------AGCATTGCTTTTGCTCCTAGG 78 consensus_13625#0 ACATTTT-CAAGTTGCTGGGCACCCCAAA----------TGAGCAAGTTTGGCCAGGAGT 829 consensus_13625#1 CCCCTTCCACCGCCGCCACCGCCGCCGAATCTAGGGTTCATCGGGGATTCGGGATCGATG 181 consensus_13625#2 CACCAGGCGGCGGCGGCGCCGGTGACGACGACGACGGACGGGGGCGAGCTGCGGGCGATG 110 * * consensus_13625#3 GAGCAAGCTACCTAACTGGCACGNGTACCCCCAGTGGAATCCCTCGAAAGTGTCTGATCT 133 consensus_13625#4 GGAAAAAGTACT--GTTNGTGTCTGTTTCCC---TGGATGCTGCTTAGTGTGCTTAAGAA 133 consensus_13625#0 GAGCAAGCTACCTAACTGGCACGAGTACCCCCAGTGGAATCCCTCGAAAGTGTCTGATCT 889 consensus_13625#1 GAGAAGTACGAGAAGCTGGAGAAGGTNGGGG-AAGGGACGTACGGGAAGGTGTACAAGG- 239 consensus_13625#2 GACCTGTACGATAAGCTGGAGAAGGTCGGGG-AGGGGACGTACGGGAAGGTGTACAAGG- 168 * * * ** *** * *** * consensus_13625#3 TGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGAAAATGCTGCAGTACGAGCC 193 consensus_13625#4 TTCACTTGTTTGTGATGGTAATGAGT---AATGACTTAAGAA-----TTCGACAAAATCT 185 consensus_13625#0 TGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGAAAATGCTGCAGTACGAGCC 949 consensus_13625#1 CGCAGGACAGGGCGACGGGGCAGCTG--GTGGCGCTGAAGAAGACGAGGCTGGAGATGGA 297 consensus_13625#2 CGCGGGAGAAGGCGACGGGGCGGATC--GTGGCGCTGAAGAAGACGCGGCTGCCGGAGGA 226 ** * * ** **** * consensus_13625#3 GTCGAAGCGGATCTCTGCGAAGAAGGCCATGGAGCATCCCTACTTCAACGACGTGAACAA 253 consensus_13625#4 GTGTGTTTATATGTTTCATAAGTCGATCAGTTTTCTTGTTTGGTTTTGTT-TGTTGTCGT 244 consensus_13625#0 GTCGAAGCGGATCTCTGCGAAGAAGGCCATGGAGCATCCCTACTTCAACGACGTGAACAA 1009 consensus_13625#1 CGAGGAGGGGATCCCGCCCACCGCGCTGCGCGAG-ATCTCCATCCTCAGGCTGCTCTCCC 356 consensus_13625#2 CGACGAGGGCGTGCCGCCGACGGCGCTCAGGGAG-GTGTCGCTGCTGCGGATGCTGTCGC 285 * * * * * * consensus_13625#3 GGAGCTCTACTGAAGGTCGATTGATGATGTTCACCACCAAGGAAAAAAAAAACGTTGTGC 313 consensus_13625#4 TAATTCGTCAAGTCNGTCAGCNNGTTNTGTGNGAAAAAAAAAAAAAAAAAAAAAAAAAAA 304 consensus_13625#0 GGAGCTCTACTGAAGGTCGATTGATGATGTTCACCACCAAGGAAAAAAAAA-CGTTGTGC 1068 consensus_13625#1 AGTCGCTCTACGTCGTCCGCCTCCTCTCCGTCGAGCAGGCC---ACCAAGAACGGCAAGC 413 consensus_13625#2 AGGACTCGCACGTGGTGCGCCTGCTGGACCTCAAGCAGGGGCAGAACAAGGAGGGCCAGA 345 * * * * ** consensus_13625#3 GTCTTCGTGACTAGCCTGCCCTGAAGCATTGCTTTTGCTTCTAGGGGGAAAAGTACTGTT 373 consensus_13625#4 ------------------------------------------------------------ consensus_13625#0 GTCTTCGTGACTAGCCTGCCCTGAAGCATTGCTTTTGCTTCTAGGGGGAAAAGTACTGTT 1128 consensus_13625#1 CCGTCCTCTACCTCGTCTTCGAGTTCCTCGACACCGACCTCAAGAAGTTCGTCGACGCCT 473 consensus_13625#2 CCATCCTCTACCTCGTCTTCGAGTACATGGACACCGACCTCAAGAAGTTCATCCGCGCCC 405 consensus_13625#3 TGTGTCTGTTTCCTGGATGCTGCTTANTGTGCTTAANAAT-------------------- 413 consensus_13625#4 ------------------------------------------------------------ consensus_13625#0 TGTGTCTGTTTCCTGGATGCTGCTTAGTGTGCTTAAGAATTCACTTGTTTGTGATGGTAA 1188 consensus_13625#1 ACCGCAAGGGCCCCAACCCTCGCCCCCTCCCCACCAACGTCATCAAGAGCTTCTTGTATC 533 consensus_13625#2 ACCGCCAGAATCTCCAGAAGATCCCCGTGCCCACCG------TCAAGATCCTGATGTACC 459 consensus_13625#3 ------------------------------------------------------------ consensus_13625#4 ------------------------------------------------------------ consensus_13625#0 TGAGTAATGACTTAAGAATTCGACAAAATCTGTGTGTTTATATGTTTCATAAGTCGATCA 1248 consensus_13625#1 AGTTATGCAAAGGAGTCGCACATTGCCATGGCCATGGTGTCCTTCACCGTGATTTAAAGC 593 consensus_13625#2 AGCTCTGCAAGGGCGTTGCTTTCTGCCATGGCCGCGGTGTGCTGCACCGTGACCTCAAGC 519 consensus_13625#3 ------------------------------------------------------------ consensus_13625#4 ------------------------------------------------------------ consensus_13625#0 GTTTTCTTGGGGGGGGCCGCGGTACC---------------------------------- 1274 consensus_13625#1 CACAAAACCTGTTGGTCGACAAGGAAAAGGGGATATTGAAAATTGCTGATCTTGGGCTAG 653 consensus_13625#2 CGCATAACCTGCTCATGGACCGCAAGACCATGGCGCTCAAGATCGCCGACCTCGGGCTCA 579 consensus_13625#3 ------------------------------------------------------------ consensus_13625#4 ------------------------------------------------------------ consensus_13625#0 ------------------------------------------------------------ consensus_13625#1 GTAGGGCGTTCACTGTTCCTATGAAAAGCTACACACATGAGATTGTGACTCTTTGGTACA 713 consensus_13625#2 GCCGCTCGTTCACTGTCCCTCTC------------------------------------- 602 consensus_13625#3 ------------------------------------------------------------ consensus_13625#4 ------------------------------------------------------------ consensus_13625#0 ------------------------------------------------------------ consensus_13625#1 GAGCTCCTGAAGTTTTGCTTGGATCAACACATTACTCAACCGGTGTTGACATTTGGTCCG 773 consensus_13625#2 ------------------------------------------------------------ consensus_13625#3 ------------------------------------------------------ consensus_13625#4 ------------------------------------------------------ consensus_13625#0 ------------------------------------------------------ consensus_13625#1 TTGGTTGCATCTTCGCTGAAATGGTCAGAAAACAAGCTCTTTTTCCAGGTGACT 827 consensus_13625#2 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||