These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13637#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 855 fasta sequence [GAGTAGAAAGGAAGAAGCAAAGCAATCTCCGTGAGCGGTGATGGCGCAGCAG-TGGCGATCTCTCCTCTTCCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCGCCTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTTGAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTT-GGAGACC-AAAGTGCAGGGCAAGTTTCA-GGGCTCTCCTGCCATTATCACATACCGTGTTCCCAC-AAAGGCCGCACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGAGAGACCTCCCCAACAGAAGTTTGAATTGGCTAAGAGACTTGTGGGGAAATATGGGTCGCTGGTCTCCGTTGTTTCCTTTGTC-GGTGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAATCCACTGCTGCAAAAGGAAGCAAGAAGAGGCGCTAAATCT-GTTTTGTTGCCTTTTTTTTGTTGTATTTGGTTTTACAAGAATGTACTCTCTCAGGTTTTATAAGGTTCTCCTATGTACTCTAAGGGATTAACTAGACTAAGGCATCATCTGTCATTTTGGCCTTCTGTAGTTGAGCATCTCGGGTGAGGCCTGAGCTGACTGACTTAAAATCAGAGGTGTAGATTTGATACATCTTAAATCATTTTAGTACATTCAACCTTTTGTG] [+] EMBL CF313897 [GAGTAGAAAGGAAGAAGCAAAGCAATCTCCGTGAGCGGTGATGGCGCAGCAG TGGCGATCTCTCCTCTTCCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCGCCTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTTGAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTT GGAGACC AAAGTGCAGGGCAAGTTTCA GGGCTCTCCTGCCATTATCACATACCGTGTTCCCAC AAAGGCCGCACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGAGAGACCTCCCCAACAGAAGTTTGAATTGGCTAAGAGACTTGTGGGGAAACATGGGTCGCTGGTTCCCGTTGTTTCCTTTGTCGGGTGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAATCCA ] [+] EMBL AK103317 [ CAAAGCAATCTCCGTGAGCGGTGATGGCGCAGCAG TGGCGATCTCTCCTCTTCCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCGCCTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTTGAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTT GGAGACC AAAGTGCAGGGCAAGTTTCA GGGCTCTCCTGCCATTATCACATACCGTGTTCCCAC AAAGGCCGCACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGAGAGACCTCCCCAACAGAAGTTTGAATTGGCTAAGAGACTTGTGGGGAAATATGGGTCGCTGGTCTCCGTTGTTTCCTTTGTC GGTGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAATCCACTGCTGCAAAAGGAAGCAAGAAGAGGCGCTAAATCT GTTTTGTTGCCTTTTTTTTGTTGTATTTGGTTTTACAAGAATGTACTCTCTCAGGTTTTATAAGGTTCTCCTATGTACTCTAAGGGATTAACTAGACTAAGGCATCATCTGTCATTTTGGCCTTCTGTAGTTGAGCATCTCGGGTGAGGCCTGAGCTGACTGACTTAAAATCAGAGGTGTAGATTTGATACATCTTAAATCATTTTAGTACATTCAACCTTTTGTG] [+] EMBL BE041002 [ CAATCTCCGTGAGCGGTGATGGCGCAGCAG TGGCGATCTCTCCTCTTTCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCGCCTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTTGAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTT GGAGACC AAAGTGCAGGGCAAGTTTCA GGGCTCTCCTGCCATTATCACATACCGTGTTCCCAC AAAGGCCGCACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGAGAGACCTCCCCAACAGAAGTTTGAATTGGCTAAGAGACTTGTGGGGAAATATGGGTCGCTGGTCTCCGTTGTTTCCTTTGTC GGTGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAATCCACTGCTGCAAAAGGAAGCAAGAAGAGGCGCTAAATCTGGTTTTGTTGCCTTTTTTTTGTTGTATTTGGTTTTACAAGAATGTACTCTCTCAGGTTTTATAAGGTTCTCCTATGTACTCTAAGGGA NAACTAGACT AGGCAT ATCTGT ATTTTGG CTTCTGTA TTGAGC TCTC GGTGAGGCCT A CTG CTGGCTAAAt ] [+] EMBL AU223101 [ ATCTCCGTGAGCGGTGATGGCGCAGCAG TGGCGATCTCTCCTCTTCCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCGCCTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTTGAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTT GGAGACC AAAGTGCAGGGCAAGTTTCA GGGCTCTCCTGCCATTATCACATACCGTGTTCCCAC AAAGGCCGCACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTG ] [+] EMBL OSS3659A [ ATCTCCGTGAGCGGTGATGGCGCA NAG TGGCGATCTCTCCTCTTCCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCG CTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATAATGTTAGCTTGAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTT GGAGACC AAAGTGCAGGGCAAGTTTCA GGGCTCTCCTGCCATTATCACATACNGTGTTTCCACAAAAGGCCGCACTTCAGGAGGCTTANT AAAGGCCATGTTTCCACTTGATATTCTTGCTGA ] [+] EMBL OSS3431A [ ATCTCCGTGAGCGGTGATGGCGCA NAGATGGCGATCTCTCCTCTTCCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGNCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCG CTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTTGAACGACGACTCTTGGNCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTT GGAGGCC AAAGTGCAGGGCAAGTTTCA GGGCTCTCCTGCCATTATCACATACCGTGnt ] [+] EMBL CF331637 [ TCTCCGTGAGCGGTGATGGCGCAGCAG TGGCGATCTCTCCTCTTCCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAG ] [+] EMBL C73802 [ TGAGCGGTGATGGCGCANANG TGGCGATCTCTCCTCTTCCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCG CTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTTGAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTTGGGAGACCAAAAGTGCAGGGCAAGTTTCAGGGGCTCTCCTGCCATTATCACATACCGTGTTCCCACAAAAGGCCGCACTTCAGGAGGCTTAATNNAAGGCCATGTTTTCACTTG ] [+] EMBL BP184776 [ TGGCGATCTCTCCTCTTCCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCGCCTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTTGAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTT GGAGACC AAAGTGCAGGGCAAGTTTCA GGGCTCTCCTGCCATTATCACATACCGTGTTCCCAC AAAGGCCGCACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGAGAGACCTCCCCAACAGAAGTTTGAATTGGCTAAGAGACTTGTGGGGAAATATGGGTCGCTGGTCTCCGTTGTTTCCTTTGTC GGTGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAATCCACTGCTGCAAAAGGAAGCAAGAAG ] [-] EMBL CF331638 [ GGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGAGAGACCTCCCCAACAGAAGTTTGAATTGGCTAAGAGACTTGTGGGGAAATATGGGTCGCTGGTCTCCGTTGTTTCCTTTGTC GGTGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAATCCACTGCTGCAAAAGGAAGCAAGAAGAGGCGCTAAATCT GTTTTGTTGCCTTTTTTTTGTTGTATTTGGTTTTACAAGAATGTACTCTCTCAGGTTTTATAAGGTTCTCCTATGTACTCTAAGGGATTAACTAGACTAAGGCATCATCTGTCATTTTGGCCTTCTGTAGTTGAGCATCTCGGGTGAGGCCTGAGCTGACTGACTTAAAATCAGAGGTGTAGATTTGATACATCTTAAATCATTTTAGTACATTCAAaaaaa ] consensusID : consensus_13637#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 838 fasta sequence [CGTGAGCGGTGATGGCGCAGCAGTGGCGATCTCTCCTCTTTCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCGCCTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTTGAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTTGGAGACCAAAGTGCAGGGCAAGTTTCAGGGCTCTCCTGCCATTATCACATACCGTGTTCCCACAAAGGCCGCACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGAGAGACCTCCCCAACAGAAGTTTGAATTGGCTAAGAGACTTGTGGGGAAATATGGGTCGCTGGTCTCCGTTGTTTCCTTTGTCGGTGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAATCCACTGCTGCAAAAGGAAGCAAGAAGAGGCGCTAAATCTGTTTTGTTGCCTTTTTTTTGTTGTATTTGGTTTTACAAGAATGTACTCTCTCAGGTTTTATAAGGTTCTCCTATGTACTCTAAGGGATTAACTAGACTAAGGCATCATCTGTCATTTTGGCCTTCTGTAGTTGAGCATCTCGGGTGAGGCCTGAGCTGACTGACTTAAAATCAGAGGGGTAGATTTGATACATCTTAAATCATTTTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA759088 [CGTGAGCGGTGATGGCGCAGCAGTGGCGATCTCTCCTCTTTCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGCGCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCGCCTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTTGAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTTGGAGACCAAAGTGCAGGGCAAGTTTCAGGGCTCTCCTGCCATTATCACATACCGTGTTCCCACAAAGGCCGCACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGAGAGACCTCCCCAACAGAAGTTTGAATTGGCTAAGAGACTTGTGGGGAAATATGGGTCGCTGGTCTCCGTTGTTTCCTTTGTCGGTGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAATCCACTGCTGCAAAAGGAAGCAAGAAGAGGCGCTAAATCTGTTTTGTTGCCTTTTTTTTGTTGTATTTGGTTTTACAAGAATGTACTCTCTCAGGTTTTATAAGGTTCTCCTATGTACTCTAAGGGATTAACTAGACTAAGGCATCATCTGTCATTTTGGCCTTCTGTAGTTGAGCATCTCGGGTGAGGCCTGAGCTGACTGACTTAAAATCAGAGGGGTAGATTTGATACATCTTAAATCATTTTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BE530961 [ GTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCGCCTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTTGAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGATTGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTTGGAGACCAAAGTGCAGGGCAAGTTTCAGGGCTCTCCTGCCATTATCACATACCGTGTTCCCACAAAGGCCGCACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGAGAGACCTCCCCAACAGAAGTTTGAATTGGCTAAGAGACTTGTGGGGAAATATGGGTCGCTGGTCTCCGTTGTTTCCTTTGTCGGTGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAAT ] [+] EMBL C74971 [ TGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTTGGAGACCAAAGTGCAGGGCAAGTTTCAGGGCTCTCCTGCCATTATCACATACCGTGTTCCCACAAAGGCCGCACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGANAGACCTCCCCANCAGANGTTTGAATTGGCTAAGAGACTTGTGGGGAAATATGGGTCGCTGGTCTCCGTNGTTTCCTTTGTCGGTGTGTTTATCTAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13637#0 GAGTAGAAAGGAAGAAGCAAAGCAATCTCCGTGAGCGGTGATGGCGCAGCAGTGGCGATC 60 consensus_13637#1 -----------------------------CGTGAGCGGTGATGGCGCAGCAGTGGCGATC 31 ******************************* consensus_13637#0 TCTCCTCTTCCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGC 120 consensus_13637#1 TCTCCTCTTTCTCCTCCTCCTCCTCCTCGTGCCCTTCGCCGCCGCCGCCGGGCAGGATGC 91 ********* ************************************************** consensus_13637#0 GCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCG 180 consensus_13637#1 GCCGTTCGTGGTAGCACAGAAGAAGGTTGCGCTGTCCCGCCCGGGTCCAGGCGTGGAGCG 151 ************************************************************ consensus_13637#0 CCTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTT 240 consensus_13637#1 CCTCGCCGTCACCCTCAACCTCTACAACCAGGGTTCCGCGACCGCCTATGATGTTAGCTT 211 ************************************************************ consensus_13637#0 GAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGAT 300 consensus_13637#1 GAACGACGACTCTTGGCCACAGGAGGCTTTTCAACTTATCTCTGGAACCACATCAAAGAT 271 ************************************************************ consensus_13637#0 TGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTTGGAGACCAAAGT 360 consensus_13637#1 TGTGGAAAAACTTGATCCTGGTGCTACTGCTTCCCACAACTTCATCTTGGAGACCAAAGT 331 ************************************************************ consensus_13637#0 GCAGGGCAAGTTTCAGGGCTCTCCTGCCATTATCACATACCGTGTTCCCACAAAGGCCGC 420 consensus_13637#1 GCAGGGCAAGTTTCAGGGCTCTCCTGCCATTATCACATACCGTGTTCCCACAAAGGCCGC 391 ************************************************************ consensus_13637#0 ACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGAGAGACCTCC 480 consensus_13637#1 ACTTCAGGAGGCTTACTCAACGCCCATGTTTCCACTTGATATTCTTGCTGAGAGACCTCC 451 ************************************************************ consensus_13637#0 CCAACAGAAGTTTGAATTGGCTAAGAGACTTGTGGGGAAATATGGGTCGCTGGTCTCCGT 540 consensus_13637#1 CCAACAGAAGTTTGAATTGGCTAAGAGACTTGTGGGGAAATATGGGTCGCTGGTCTCCGT 511 ************************************************************ consensus_13637#0 TGTTTCCTTTGTCGGTGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAATCCACTGCTGC 600 consensus_13637#1 TGTTTCCTTTGTCGGTGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAATCCACTGCTGC 571 ************************************************************ consensus_13637#0 AAAAGGAAGCAAGAAGAGGCGCTAAATCTGTTTTGTTGCCTTTTTTTTGTTGTATTTGGT 660 consensus_13637#1 AAAAGGAAGCAAGAAGAGGCGCTAAATCTGTTTTGTTGCCTTTTTTTTGTTGTATTTGGT 631 ************************************************************ consensus_13637#0 TTTACAAGAATGTACTCTCTCAGGTTTTATAAGGTTCTCCTATGTACTCTAAGGGATTAA 720 consensus_13637#1 TTTACAAGAATGTACTCTCTCAGGTTTTATAAGGTTCTCCTATGTACTCTAAGGGATTAA 691 ************************************************************ consensus_13637#0 CTAGACTAAGGCATCATCTGTCATTTTGGCCTTCTGTAGTTGAGCATCTCGGGTGAGGCC 780 consensus_13637#1 CTAGACTAAGGCATCATCTGTCATTTTGGCCTTCTGTAGTTGAGCATCTCGGGTGAGGCC 751 ************************************************************ consensus_13637#0 TGAGCTGACTGACTTAAAATCAGAGGTGTAGATTTGATACATCTTAAATCATTTTAGTAC 840 consensus_13637#1 TGAGCTGACTGACTTAAAATCAGAGGGGTAGATTTGATACATCTTAAATCATTTTAGTAA 811 ************************** ******************************** consensus_13637#0 ATTCAACCTTTTGTG------------ 855 consensus_13637#1 AAAAAAAAAAAAAAAAAAAAAAAAAAA 838 * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||