These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13644#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1186 fasta sequence [TTTCCAATGGCCCTAGCCGGAGCCCCTCGCCGCCGGCGAGCTACACGTTCGCGTCTCCCCCCCACTCTCCTCCTCATCGTCCTCCTCCTCCTCGGCGGGGCTCCTCGTGCTTCCGCGCTCCGCGTCCCGCTTCGCGAGGTCGCCACCCTCCTCAACCTCTCCCGCTCCCTCCTCAACCGCGTCGCCGCCGCCCGCGCGGCCCGTGGAGACGACTTTGCGGCGTCCCGCGCGCGCAGGATCGCCTCCCATCTCTCCCTCTTCTCATCCCGCGGCGCGTGGGCACTCTCTTGGGACTACCTCCGCCACTACGCCTTCTCGTCGGCTGCCGGGTGCGGCCTCTCCTGCGCCACCGCCGCTGCTCGCCTCCTCGCTGCTGCTGCGGAGGTCTCGCGCCTGCATTCCGCCACCGACGCCGCCCAGTGGCTGCGCCGCAATTACGGGGACGTCCGCGACGCGGCCGCGCAGCTCCTCAACGGTCTCCTTGTTGCCTTCTCCGAGCAGGGGCCTTTACGAGAGGTGGTGATGGATGTGAAGTGGGAAGTGGAGGAAGGGGAGCTGCTGAAGGATTGCCTCAAGGTGGGAGCTAAGGACTTGGAGGGGTTGCTTGTCATTGCCAAAGATCTCTTATTTGGGGCCACAAGGACTTCTTCGCGCCACAACGAACTTTGAGGTTTGGTACATTGGAGACTCGCTGTGCTCCTGTTCTTTCATTTGAACTAATGAAATTAAACTTAAGTTCAGTATTAGAAATCCAGAACTTCGGTTAACATTACATCCTGCAGACCACCTAGTAACTACCGGTGTGATATTATACCCAGCGTTTCATACCCGAGAAAATTTTTGTGTGAAGATGCATAGTTGAAATATACTCCCTCCGTCCCAAAATACTTGTCGTTTTGAGTTTTTGTTTGTAACGTTTGACGACTAGTCGTATTCAAAAGATTATGGAATTATTATTTATTTTGTTTGTGACTTGCTTTATTATTAAAAGTACTTTAAGTATGACATTTTTTTTTAATATTTGCACTAATTTTTTAAATAAGACGAATGGTCAAACGTTGCAAGCAAAAAGTCAAAACAACATCTAATTTGGGACGGAGGTAGTATCTTCTAGTGGTTAATGAATCGTAGTCATTGCGAAGTGTTCATTATCGATACACATATTCTGGTGGATAATTAATGAAAA] [+] EMBL AK102017 [TTTCCAATGGCCCTAGCCGGAGCCCCTCGCCGCCGGCGAGCTACACGTTCGCGTCTCCCCCCCACTCTCCTCCTCATCGTCCTCCTCCTCCTCGGCGGGGCTCCTCGTGCTTCCGCGCTCCGCGTCCCGCTTCGCGAGGTCGCCACCCTCCTCAACCTCTCCCGCTCCCTCCTCAACCGCGTCGCCGCCGCCCGCGCGGCCCGTGGAGACGACTTTGCGGCGTCCCGCGCGCGCAGGATCGCCTCCCATCTCTCCCTCTTCTCATCCCGCGGCGCGTGGGCACTCTCTTGGGACTACCTCCGCCACTACGCCTTCTCGTCGGCTGCCGGGTGCGGCCTCTCCTGCGCCACCGCCGCTGCTCGCCTCCTCGCTGCTGCTGCGGAGGTCTCGCGCCTGCATTCCGCCACCGACGCCGCCCAGTGGCTGCGCCGCAATTACGGGGACGTCCGCGACGCGGCCGCGCAGCTCCTCAACGGTCTCCTTGTTGCCTTCTCCGAGCAGGGGCCTTTACGAGAGGTGGTGATGGATGTGAAGTGGGAAGTGGAGGAAGGGGAGCTGCTGAAGGATTGCCTCAAGGTGGGAGCTAAGGACTTGGAGGGGTTGCTTGTCATTGCCAAAGATCTCTTATTTGGGGCCACAAGGACTTCTTCGCGCCACAACGAACTTTGAGGTTTGGTACATTGGAGACTCGCTGTGCTCCTGTTCTTTCATTTGAACTAATGAAATTAAACTTAAGTTCAGTATTAGAAATCCAGAACTTCGGTTAACATTACATCCTGCAGACCACCTAGTAACTACCGGTGTGATATTATACCCAGCGTTTCATACCCGAGAAAATTTTTGTGTGAAGATGCATAGTTGAAATATACTCCCTCCGTCCCAAAATACTTGTCGTTTTGAGTTTTTGTTTGTAACGTTTGACGACTAGTCGTATTCAAAAGATTATGGAATTATTATTTATTTTGTTTGTGACTTGCTTTATTATTAAAAGTACTTTAAGTATGACATTTTTTTTTAATATTTGCACTAATTTTTTAAATAAGACGAATGGTCAAACGTTGCAAGCAAAAAGTCAAAACAACATCTAATTTGGGACGGAGGTAGTATCTTCTAGTGGTTAATGAATCGTAGTCATTGCGAAGTGTTCATTATCGATACACATATTCTGGTGGATAATTAATGAAAA] consensusID : consensus_13644#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1072 fasta sequence [CCGTCCCAAAATACTTGTCGTTTTGAGTTTTTGTTTGTAACGTTTGATCATTCATCTTATTAAAGAGATTATGGAATTATTATTTATTTTGTTTGTGACTTGCTTTATTATCAAAAGTACTTTAAGTATGACTTATCATTTTTATATTTGCACTAATTTTTTAAATAAGATGAATGGTCAAACGTTGCAAGCGAAAAGTTAGAATGACATCTAATTAGGTTAGAATGACATCTAATTAGGAACGGAAGGAGTAATATCAATGGTTCAAGACGTGTACCCAGCAAAGAGCACATTTACTAAGACGGTAGCTCCAACGGCAAGGCCAGCTAGTTCACCAATAGCTCGGTTGTCGGTGGCGACGCCGGAGACGACGAACATGAGGTAGAAGGTGATGATGAACTCCATCGCCAGCGACTGCACGTCGGACCCGGCCGGCGCCGTCCCGAAGAAGTGCTCCGGCGCGCCGCCGAACAGCGCCCGCAGCGCCGCGCTCGCCGCCGCCGAGCCGGCCACCTGCGCCGCCGCGTACGCCGGCACCCGCCGCCACGGGAACCTGCCGCAGGTGGCGAACGCGAGGGTGACCGCCGGGTTGAGGTGCGCGCCGGAGATGTGGCCGACGGAGTACACCATCACCATCACGGCGAGCCCCCACGTGATGCAGATCCCCGGGAACGTCACCGTGCCTCCCGTCCTCTTGTTCACCGCCACCGTCGCGCACCCCGCGAAGATGAGGAAGAACGTCCCCAAGATCTCCGCGATCACCTTCTGCGCGAATTGGACAGAGAACATGGGGTGGTTATTACTAGAGCTCTTGCTTCCTCCATCTTGCTCTGAATTCTCACACCTTGCTTGATGATCTCTGCTGCCTTCCTCCATAGCTCTGGTTTCTTCATGCTGGCCATTAACTCCATGCTCTCCTCCAGCCATCTCTTCTCTCTCTCTCTAGATTCTCTCTCTGAAATCTCTAGCTATGATCTTATCCTGTTCTTCCTCTACTGCTCTGAACTTCTGAATAACTGAAGATAACAAGAAGATGCAGCTTGGTCTCTACTATTTATGGCCTTCAGCTCGG] [-] EMBL CF325536 [CCGTCCCAAAATACTTGTCGTTTTGAGTTTTTGTTTGTAACGTTTGATCATTCATCTTATTAAAGAGATTATGGAATTATTATTTATTTTGTTTGTGACTTGCTTTATTATCAAAAGTACTTTAAGTATGACTTATCATTTTTATATTTGCACTAATTTTTTAAATAAGATGAATGGTCAAACGTTGCAAGCGAAAAGTTAGAATGACATCTAATTAGGTTAGAATGACATCTAATTAGGAACGGAAGGAGTAATATCAATGGTTCAAGACGTGTACCCAGCAAAGAGCACATTTACTAAGACGGTAGCTCCAACGGCAAGGCCAGCTAGTTCACCAATAGCTCGGTTGTCGGTGGCGACGCCGGAGACGACGAACATGAGGTAGAAGGTGATGATGAACTCCATCGCCAGCGACTGCACGTCGGACCCGGCCGGCGCCGTCCCGAAGAAGTGCTCCGGCGCGCCGCCGAACAGCGCCCGCAGCGCCGCGCTCGCCGCCGCCGAGCCGGCCACCTGCGCCGCCG ] [-] EMBL CB675614 [ AAAAGTTAGAATGACATCTAATTAGGTTAGAATGACATCTAATTAGGAACGGAAGGAGTAATATCAATGGTTCAAGACGTGTACCCAGCAAAGAGCACATTTACTAAGACGGTAGCTCCAACGGCAAGGCCAGCTAGTTCACCAATAGCTCGGTTGTCGGTGGCGACGCCGGAGACGACGAACATGAGGTAGAAGGTGATGATGAACTCCATCGCCAGCGACTGCACGTCGGACCCGGCCGGCGCCGTCCCGAAGAAGTGCTCCGGCGCGCCGCCGAACAGCGCCCGCAGCGCCGCGCTCGCCGCCGCCGAGCCGGCCACCTGCGCCGCCGCGTACGCCGGCACCCGCCGCCACGGGAACCTGCCGCAGGTGGCGAACGCGAGGGTGACCGCCGGGTTGAGGTGCGCGCCGGAGATGTGGCCGACGGAGTACACCATCACCATCACGGCGAGCCCCCACGTGATGCAGATCCCCGGGAACGTCACCGTGCCTCCCGTCCTCTTGTTCACCGCCACCGCCGCGCACCCCGCGAAGATGAGGAAGAACGTCCCCAAGATCTCCGCGATCACCTTCTGCGCGAATTGGACAGAGAACATGGGGTGGTTATTACTAGAGCTCTTGCTTCCTCCATCTTGCTCTGAATTCTCACACCTTGCTTGATGATCTCTGCTGCCTTCCTCCATAGCTCTGGTTTCTTCATGCTGGCCATTAACTCCATGCTCTCCTCCAGCCATCTCTTCTCTCTCTCTCTAGATTCTCTCTCTGAAATCTCTAGCTATGATCTTATC ] [-] EMBL OSS4247A [ GATCCCCGGNAACGTCACCGTGCCTCCCGTCCTCTTGTTCACCGCCACCGTCGCGCACCCCGCGAAGATGAGGAAGAACGTCCCCAAGATCTCCGCGATCACCTTCTGCGCGAATTGGACAGAGAACATGGGGTGGTTATTACTAGAGCTCTTGCTTCCTCCATCTTGCTCTGAATTCTCACACCTTGCTTGATGATCTCTGCTGCCTTCCTCCATAGCTCTGGTTTCTTCATGCTGGCCATTAACTCCATGCTCTCCTCCAGCCATCTCTTCTCTCTCTCTCTAGATTCTCTCTCTGAAATCTCTAGCTATGATCTTATCCTGTTCTTCCTCTACTGCTCT ] [-] EMBL OSS2921A [ CCGTGCCTCCCGTCCTCTTGTTCACCGCNACCGTCGCGAACACCGCGAAGATGAGGAAGAACGTCCCCAAGATCTCCGCGATCACCTTCTGCGCGAATTGGACAGAGAACATGGGGTGGTTATTACTAGAGCTCTTGCTTCCTCCATCTTGCTCTGAATTCTCACACCTTGCTTGATGATCTCTGCTGCCTTCCTCCATAGCTCTGGTTTCTTCATGCTGGCCATTAACTCNATGCTCTCCTCCAGCCATCTCTTCTCTCTCTCTCTAGATTCTCTCTCTGAAATCTCTAGCTATGATCTTATCCTGTTCTTCCTCTACTGCTCTG ] [-] EMBL OSS2126A [ TCCATCTTGCTCTGAATTCTCACACCTTGCTTGATGATCTCTGCTGCCTTCCTCCATAGCTCTGGTTTCTTCATGCTGGCCATTAACTCCATGCTCTCCTCCAGCCATCTCTTCTCTCTCTCTCTAGATTCTCTCTCTGAAATCTCTAGCTATGATCTTATCCTGTTCTTCCTCTACTGCTCTGAACTTCTGAATAACTGAAGATAACAAGAAGATGCAGCTTGGTCTCTACTATTTATGGCCTTCAGCTCGG] consensusID : consensus_13644#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 801 fasta sequence [GCAAATTCTAGCACAGCCATTTGGTGTCAATGTTTTTCTTCAGAATGATAATTACAACAAGTAACCCAATCCTTCACCATTTAAGCTACAACAAGCCAACCAAAGCATGTAAAATCTATGCAATCACAGTGTCAATTACTTTTACTGCCCATTCATTCCATCAACATCACTAGCTACAGAAAAAAAAAGGAAACATTTTACCACAATAAAACTGATCAATTCTGGGACCTAGTTCCTCCTTGTGCTTCTAATGAAGGATGCAGTCATGGTGATCTCTCTTAGCGGTTTGTCGGTGAACCGGATAAGATTGTAGGCCCACGCGCCAGCAACTGCGCCAAAAACCGGGCCGGCGATGTACACCCAGATACCGGTATACCGGCCGAGGATGATCGCCGGTCCGATGGTCCTGGCCGGGTTCATGGACGCTCCTGATATTGGCCTGCAGATTATGTCCAATTGAATATTATTGTCATTGACTAAATTGAAGAAATCCATATATGACTAGCTAAACCATACAGAGAGAATAGAGCATGTACCATGATAATACGGAGTAACTAATGTCATTAAATGACTTTTTCTGCTGTGCAAGTAGAGGTCATTTACTGCTGTGCAAGTAGAGGAGAGAAAAAAATGTGTTTCTTTGCAGCATTGGCATAGTTTATCGAGAATTATTTCACAGAAGTTTCCTTCTTTTGAAAACGGAGGCGGTAATAAATGTCTCCAAAATATTTTTTAAAAAAATAAATTTATATAAGTACTTATAGTATTACTACACCTACTTATAGACTTTTAACTGAAAAA] [+] EMBL CB675615 [GCAAATTCTAGCACAGCCATTTGGTGTCAATGTTTTTCTTCAGAATGATAATTACAACAAGTAACCCAATCCTTCACCATTTAAGCTACAACAAGCCAACCAAAGCATGTAAAATCTATGCAATCACAGTGTCAATTACTTTTACTGCCCATTCATTCCATCAACATCACTAGCTACAGAAAAAAAAAGGAAACATTTTACCACAATAAAACTGATCAATTCTGGGACCTAGTTCCTCCTTGTGCTTCTAATGAAGGATGCAGTCATGGTGATCTCTCTTAGCGGTTTGTCGGTGAACCGGATAAGATTGTAGGCCCACGCGCCAGCAACTGCGCCAAAAACCGGGCCGGCGATGTACACCCAGATACCGGTATACCGGCCGAGGATGATCGCCGGTCCGATGGTCCTGGCCGGGTTCATGGACGCTCCTGATATTGGCCTGCAGATTATGTCCAATTGAATATTATTGTCATTGACTAAATTGAAGAAATCCATATATGACTAGCTAAACCATACAGAGAGAATAGAGCATGTACCATGATAATACGGAGTAACTAATGTCATTAAATGACTTTTTCTGCTGTGCAAGTAGAGGTCATTTACTGCTGTGCAAGTAGAGGAGAGAAAAAAATGTGTTTCTTTGCAGCATTGGCATAGTTTATCGAGAATTATTTCACAGAAGTTTCCTTCTTTTGAAAACGGAGGCGGTAATAAATGTCTCCAAAATATTTTTTAAAAAAATAAATTTATATAAGTACTTATAGTATTACTACACCTACTTATAGACTTTTAACTGAAAAA] [-] EMBL AK062320 [ AGTGTCAATTACTTTTACTGCCCATTCATTCCATCAACATCACTAGCTACAGAAAAAAAAAGGAAACATTTTACCACAATAAAACTGATCAATTCTGGGACCTAGTTCCTCCTTGTGCTTCTAATGAAGGATGCAGTCATGGTGATCTCTCTTAGCGGTTTGTCGGTGAACCGGATAAGATTGTAGGCCCACGCGCCAGCAACTGCGCCAAAAACCGGGCCGGCGATGTACACCCAGATACCGGTATACCGGCCGAGGATGATCGCCGGTCCGATGGTCCTGGCCGGGTTCATGGACGCTCCTGATATTGGCCTGCAGATTATGTCCAATTGAATATTATTGTCATTGACTAAATTGAAGAAATCCATATATGACTAGCTAAACCATACAGAGAGAATAGAGCATGTACCATGATAATACGGAGTAACTAATGTCATTAAATGACTTTTTCTGCTGTGCAAGTAGAGGTCATTTACTGCTGTGCAAGTAGAGGAGAGAAAAAAATGTGTTTCTTTGCAGCATTGGCATAGTTTATCGAG ] consensusID : consensus_13644#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 791 fasta sequence [AGCAGTCCTGGAAGAACAGGATAAGATCATAGCTAGAGATTTCAGAGAGAGAATCTAGAGAGAGAGAGAAGAGATGGCTGGAGGAGAGCATGGAGTTAATGGCCAGCATGAAGAAACCAGAGCTATGGAGGAAGGCAGCAGAGATCATCAAGCAAGGTGTGAGAATTCAGAGCAAGATGGAGGAAGCAAGAGCTCTAGTAATAACCACCCCATGTTCTCTGTCCAATTCGCGCAGAAGGTATGTGCACATCTCAGACCAAGATGGTTTCATTTTGATCAAATTCATCTTGAGTTTCCCTCTCATAGATATATGTAGTATTTCCCTTTGATCCTGGAATGTATAGCCAAGCTCAAACAAGTTCTCCAATCCCTATGACCCTACAATAATTCTGCAGAGAACAATAAAGAATTCAGTAGCATAACAACACTATAACAGACAAAGGAAAGATCAAGATCAGAATTTCCCATGTGGCTTGTTTTTAGAGGCGCATGTGGTAGTAGCATCCAAAATTTTCAGTAATAATATACTGTTGCGGCTACGGCAAAATCCCAAAAAAGAATTATCTGTTCTTGTTTGCGAGTCATTGTCGCCTTCATGGAGCCAAGTCTTCAACATGATTGCGTCTTGGTCATCGGCAGCAATAGTAGCTTTCACAGAAATTAGGATTGGGTTGGCTACTATGACAAGCAATTGTTGTCAATCTTGGGATCAAACGATGAACACGACATTGCTGCTAATGATAGATGATGATGATGAATTGCTGTTTGTAAAATCAAAGTGTGTTTGATTC] [+] EMBL CB649038 [AGCAGTCCTGGAAGAACAGGATAAGATCATAGCTAGAGATTTCAGAGAGAGAATCTAGAGAGAGAGAGAAGAGATGGCTGGAGGAGAGCATGGAGTTAATGGCCAGCATGAAGAAACCAGAGCTATGGAGGAAGGCAGCAGAGATCATCAAGCAAGGTGTGAGAATTCAGAGCAAGATGGAGGAAGCAAGAGCTCTAGTAATAACCACCCCATGTTCTCTGTCCAATTCGCGCAGAAGGTATGTGCACATCTCAGACCAAGATGGTTTCATTTTGATCAAATTCATCTTGAGTTTCCCTCTCATAGATATATGTAGTATTTCCCTTTGATCCTGGAATGTATAGCCAAGCTCAAACAAGTTCTCCAATCCCTATGACCCTACAATAATTCTGCAGAGAACAATAAAGAATTCAGTAGCATAACAACACTATAACAGACAAAGGAAAGATCAAGATCAGAATTTCCCATGTGGCTTGTTTTTAGAGGCGCATGTGGTAGTAGCATCCAAAATTTTCAGTAATAATATACTGTTGCGGCTACGGCAAAATCCCAAAAAAGAATTATCTGTTCTTGTTTGCGAGTCATTGTCGCCTTCATGGAGCCAAGTCTTCAACATGATTGCGTCTTGGTCATCGGCAGCAATAGTAGCTTTCACAGAAATTAGGATTGGGTTGGCTACTATGACAAGCAATTGTTGTCAATCTTGGGATCAAACGATGAACACGACATTGCTGCTAATGATAGATGATGATGATGAATTGCTGTTTGTAAAATCAAAGTGTGTTTGATTC] consensusID : consensus_13644#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence [TCGCGGCGCGGAGCCGGCGCTCGGCCTTTTCGCGCGCGCCGGAGCACTTTCTTCGGGACGGCGCCGCCGGGTCCGACGTGCAGTCGCTGGCGATGGAGTTCATCATCACCTTCTACCTCATGTTCGTCGTCTCCGGCGTCGCCACCGACAACCGAGCTATTGGTGAACTAGCTGGCCTTGCCGTTGGAGCTACCGTCTTAGTAAATGTGCTCTTTGCTGGGCCAATATCAGGAGCGTCCATGAACCCGGCCAGGACCATCGGACCGGCGATCATCCTTGGCCGGTATACCGGTATCTGGGTGTACATCGCCGGCCCGGTTTTCGGCGCAGTTGCTGGCGCGTGGGCCTACAATCTTATCCGGTTCACCGACAAACCGCTAAGAGAGATCACCATGACTGCATCCTTCATTAGAAGCACAAGGAGGAACTAGGTCCCAGAATTGATCAGTTTTATTGTGGTAAAACGTTTCCTTTTTTTTTTCTGTAGCTAGTGATGTTGATGGAATGAATGGGCAGTAAAAGTAATTGACACTGTGATTGCATAGATTTTACATGCTTTGGTTGGCTTGTTGTAGCTTAAATGGTGAAGGATTGGGTTACTTGTTGTAATTATCATTCTGAAGAAAAACATTGACACCAATGGCTGTGCTAGAATTTTGATAAGATTTATTTTTATTTGAGCATTATCGATCACATCAAAAA] [+] EMBL BQ907051 [TCGCGGCGCGGAGCCGGCGCTCGGCCTTTTCGCGCGCGCCGGAGCACTTTCTTCGGGACGGCGCCGCCGGGTCCGACGTGCAGTCGCTGGCGATGGAGTTCATCATCACCTTCTACCTCATGTTCGTCGTCTCCGGCGTCGCCACCGACAACCGAGCTATTGGTGAACTAGCTGGCCTTGCCGTTGGAGCTACCGTCTTAGTAAATGTGCTCTTTGCTGGGCCAATATCAGGAGCGTCCATGAACCCGGCCAGGACCATCGGACCGGCGATCATCCTTGGCCGGTATACCGGTATCTGGGTGTACATCGCCGGCCCGGTTTTCGGCGCAGTTGCTGGCGCGTGGGCCTACAATCTTATCCGGTTCACCGACAAACCGCTAAGAGAGATCACCATGACTGCATCCTTCATTAGAAGCACAAGGAGGAACTAGGTCCCAGAATTGATCAGTTTTATTGTGGTAAAACGTTTCCTTTTTTTTTTCTGTAGCTAGTGATGTTGATGGAATGAATGGGCAGTAAAAGTAATTGACACTGTGATTGCATAGATTTTACATGCTTTGGTTGGCTTGTTGTAGCTTAAATGGTGAAGGATTGGGTTACTTGTTGTAATTATCATTCTGAAGAAAAACATTGACACCAATGGCTGTGCTAGAATTTTGATAAGATTTATTTTTATTTGAGCATTATCGATCACATCAAAAA] consensusID : consensus_13644#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence [GGCCTTGCCGTTGGAGCTACCGTCTTAGTAAATGTGCTCTTTGCTGGGCCAATATCAGGAGCGTCCATGAACCCGGCCAGGACCATCGGACCGGCGATCATCCTTGGCCGGTATACCGGTATCTGGGTGTACATCGCCGGCCCGGTTTTCGGCGCAGTTGCTGGCGCGTGGGCCTACAATCTTATCCGGTTCACCGACAAACCGCTAAGAGAGATCACCATGACTGCATCCTTCATTAGAAGCACAAGGAGGAACTAGGTCCCAGAATTGATCAGTTTTATTGTGGTAAAATGTTTCCTTTTTTTTTTCTGTAGCTAGTGATGTTGATGGAATGAATGGGCAGTAAAAGTAATTGACACTGTGATTGCATAGATTTTACATGCTTTGGTTGGCTTGTTGTAGCTTAAATGGTGAAGGATTGGGTTACTTGTTGTAATTATCATTCTGAAGAAAAACATTGACCCCAAATGGCTGTGCTAGAATTTTGATAAGATTTATTTTTATTTGAGCAAAAAAAAAAAAA] [+] EMBL CA761957 [GGCCTTGCCGTTGGAGCTACCGTCTTAGTAAATGTGCTCTTTGCTGGGCCAATATCAGGAGCGTCCATGAACCCGGCCAGGACCATCGGACCGGCGATCATCCTTGGCCGGTATACCGGTATCTGGGTGTACATCGCCGGCCCGGTTTTCGGCGCAGTTGCTGGCGCGTGGGCCTACAATCTTATCCGGTTCACCGACAAACCGCTAAGAGAGATCACCATGACTGCATCCTTCATTAGAAGCACAAGGAGGAACTAGGTCCCAGAATTGATCAGTTTTATTGTGGTAAAATGTTTCCTTTTTTTTTTCTGTAGCTAGTGATGTTGATGGAATGAATGGGCAGTAAAAGTAATTGACACTGTGATTGCATAGATTTTACATGCTTTGGTTGGCTTGTTGTAGCTTAAATGGTGAAGGATTGGGTTACTTGTTGTAATTATCATTCTGAAGAAAAACATTGACCCCAAATGGCTGTGCTAGAATTTTGATAAGATTTATTTTTATTTGAGCAAAAAAAAAAAAA] consensusID : consensus_13644#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 426 fasta sequence [AGCGTCCATGAACCCGGCCAGGACCNTCGGACCGGCGATCATCCTCGGCCGGTATACCGGTATTTGGGTGTACATCGCCGGCCCGGTTTTTGGCGCAGTTGCTGGCGCGTGGGCCTACAATNTTATCCGGTTCNCCGACAAACCGNTAAGAGAGATCNCCATGACTGCATCCTTCATTAGAAGCNCAAGGAGGAACTAGGTCCCAGAATTGATCAGTTTTATTGTGGTAAAATGTTTCC--TTTTTTTTTCTGTAGCTAGTGATGTTGATGGAATGAATGGGCAGTAAAAGTAATTGACNCTGTGATTGCATAGATTTTACATGCTTTGGTTGGCTTGTTGTAGCTTAAATGGTGAAGGATTGGGTTACTTGTTGTAATTATCATTNTGAAGAAAAACATTGACCCCNAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU223003 [AGCGTCCATGAACCCGGCCAGGACCNTCGGACCGGCGATCATCCTCGGCCGGTATACCGGTATTTGGGTGTACATCGCCGGCCCGGTTTTTGGCGCAGTTGCTGGCGCGTGGGCCTACAATNTTATCCGGTTCNCCGACAAACCGNTAAGAGAGATCNCCATGACTGCATCCTTCATTAGAAGCNCAAGGAGGAACTAGGTCCCAGAATTGATCAGTTTTATTGTGGTAAAATGTTTCC TTTTTTTTTCTGTAGCTAGTGATGTTGATGGAATGAATGGGCAGTAAAAGTAATTGACNCTGTGATTGCATAGATTTTACATGCTTTGGTTGGCTTGTTGTAGCTTAAATGGTGAAGGATTGGGTTACTTGTTGTAATTATCATTNTGAAGAAAAACATTGACCCCNAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU222949 [ TAAGAGAGATCTCCATGACTGCATCCTTCATTAGAAGCACAAGGAGGAANTAGGTCCCAGAATTGNTCAGTTTTATTGTGGTAAAATNTTTCCTTTTTTTTTTTCTGTAGCTAGTGATGTTNATGGAATGAATGGGCAGTAAAAGTAATTGACNCTGTGATTGCATAGATTTTACATGCTTTGGTTGGCTTGTTGTAGCTTAAATGGTGAAGGATTGGGTTACTTGTTGTAATTATCATTCTGAAGAAAAACATTGACCCCNAAAAAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13644#4 ------------------------------------------------------------ consensus_13644#5 ------------------------------------------------------------ consensus_13644#6 ------------------------------------------------------------ consensus_13644#2 ------------------------------------------------------------ consensus_13644#0 TTTCCAATGGCCCTAGCCGGAGCCCCTCGCCGCCGGCGAGCTACACGTTCGCGTCTCCCC 60 consensus_13644#1 ------------CCGTCCCAAAATACTTGTCGTTT-TGAGTT-TTTGTTTGTAACGTTTG 46 consensus_13644#3 ------------------------------------------------------------ consensus_13644#4 ------------------------------------------------------------ consensus_13644#5 ------------------------------------------------------------ consensus_13644#6 ------------------------------------------------------------ consensus_13644#2 -------------------------------------------------------GCAAA 5 consensus_13644#0 CCCACTCTCCTCCTCATCGTCCTCCTCC--TCCTCGGCGGGGCTCCTCGTGCTTCCGCGC 118 consensus_13644#1 ATCATTCATCTTATTAAAGAGATTATGGAATTATTATTTATTTTGTTTGTGACTTGCTTT 106 consensus_13644#3 ------------------------------------------------------------ consensus_13644#4 ------------------------------------------------------------ consensus_13644#5 ------------------------------------------------------------ consensus_13644#6 ------------------------------------------------------------ consensus_13644#2 TTCTAGCACAGCCATTTGGTGTCAATGTTTTTCTTCAGAATGATAATTACAACAAGTAAC 65 consensus_13644#0 TCCGCGTCCCGCTTCGCGAGGTCGCCACCCTCCTCAACCTCTCCCGCTCCCTCCTCAACC 178 consensus_13644#1 ATTATCAAAAGTACTTTAAGTATGACTTATCATTTTTATATTTGCACTAATTTTTTAAAT 166 consensus_13644#3 -------------------------AGCAGTCCTGGAAGAACAGGATAAGATCATAGCTA 35 consensus_13644#4 ---------------TCGCGGCGCGGAGCCGGCGCTCGGCCTTTTCGCGCGCGCCGGAGC 45 consensus_13644#5 ------------------------------------------------------------ consensus_13644#6 ------------------------------------------------------------ consensus_13644#2 CCAATCCTTCACCATTTAAGCTACAACAAGCCAACCAAAGCATGTAAAATCTATGCAATC 125 consensus_13644#0 GCGTCGCCGCCGCCCGCGCGGCCCGTGGAGACGACTTTGCGGCGTCCCGCGCGCGCAGGA 238 consensus_13644#1 AAGATGAATGGTCAAACGTTGCAAGCGAAAA-GTTAGAATGACATCTAATTAGGTTAGAA 225 consensus_13644#3 GAGATTTCAGAGAGAGAATCTAGAGAGAGAGAGAAGAGATGGCTGGAGGAGAGCATGGAG 95 consensus_13644#4 ACTTTCTTCGGGACGGCGCCGCCGGGT----CCGACGTGCAGTCGCTGGCGATGGAGTTC 101 consensus_13644#5 ------------------------------------------------------------ consensus_13644#6 ------------------------------------------------------------ consensus_13644#2 ACAGTGTCAATTACTTTTACTGCCCAT----TCATTCCATCAACATCACTAGCTACAGAA 181 consensus_13644#0 TCGCCTCCCATCTCTCCCTCTTCTCAT----CCCGCGGCGCGTGGGCACTCTCTTGGGAC 294 consensus_13644#1 TGACATCTAATTAGGAACGGAAGGAGTAATATCAATGGTTCAAGACGTGTACCCAGCAAA 285 consensus_13644#3 TTAATGGCCAGCATGAAGAAACCAGAGCTATGGAGGAAGGCAGCAGAGATCATCAAGCAA 155 consensus_13644#4 ATCATCACCTTCTACCTCATGTTCGTCGTCTCCGGCGTCGCCACCGACAACCGAGC-TAT 160 consensus_13644#5 ------------------------------------------------------------ consensus_13644#6 ------------------------------------------------------------ consensus_13644#2 AAAAAAAGGAAACATTTTACCACAATAAAACTGATCAATTCTGGGACCTAGTTCCT-CCT 240 consensus_13644#0 TACCTCCGCCACTACGCCTTCTCGTCGGCTGCCGGGTGCGGCCTCTCCTGCGCCAC-CGC 353 consensus_13644#1 GAGCACATTTACTAAGACGGTAGCTCCAACGGCAAGGCCAGCTAGTTCACCAATAG-CTC 344 consensus_13644#3 GGTGTGAGAATTCAGAGCAAGATGGAGGAAGCAAGAGCTCTAGTAATAACCACCCCATGT 215 consensus_13644#4 TGGTGAACTAGCTGGCCTTGCCGTTGGAGCTACCGTCT-TAGTAAATGTGCTCTTTGCTG 219 consensus_13644#5 -------------GGCCTTGCCGTTGGAGCTACCGTCT-TAGTAAATGTGCTCTTTGCTG 46 consensus_13644#6 ------------------------------------------------------------ consensus_13644#2 TGTGCTTCTAATGAAGGATGCAGTCATGGTGATCTCTC-TTAGCGGTTTGTCGGTGAACC 299 consensus_13644#0 CGCTGCTCGCCTCCTCGCTGCTGCTGCGGAGGTCTCGCGCCTGCATTCCGCCACCGACGC 413 consensus_13644#1 GGTTGTCGGTGGCGACGCCGGAG--ACGACGAACATGAGGTAGAAGGTGATGATGAACTC 402 consensus_13644#3 TCTCTGTCCAATTCGCGCAGAAGGTATGTGCACATCTCAGACCAAGATGGTTTCATTTTG 275 consensus_13644#4 GGCC--AATATCAGGAGCGTCCATG-----AACCCGGCCAGGACCATCGGACCGGCGAT- 271 consensus_13644#5 GGCC--AATATCAGGAGCGTCCATG-----AACCCGGCCAGGACCATCGGACCGGCGAT- 98 consensus_13644#6 ---------------AGCGTCCATG-----AACCCGGCCAGGACCNTCGGACCGGCGAT- 39 consensus_13644#2 GGAT--AAGATTGTAGGCCCACGCGCCAGCAACTGCGCCAAAA--ACCGGGCCGGCGATG 355 consensus_13644#0 CGCC--CAGTGGCTGCGCCGCAATTACGGGGACGTCCGCGACGCGGCCGCGCAGCTCCTC 471 consensus_13644#1 CATCGCCAGCGACTGCACGTCGGACCC---GGCCGGCGCCGTCCCGAAGAAGTGCTCCGG 459 consensus_13644#3 ATCAAATTCATCTTGAGTTTCCCTCTCATAGATATATGTAGTATTTCCCTTTGATCCTGG 335 consensus_13644#4 CATCCTTGG----CCGGTATACCGGTATCTGGGTGTACATCGCCGGCC-CGGT--TTTCG 324 consensus_13644#5 CATCCTTGG----CCGGTATACCGGTATCTGGGTGTACATCGCCGGCC-CGGT--TTTCG 151 consensus_13644#6 CATCCTCGG----CCGGTATACCGGTATTTGGGTGTACATCGCCGGCC-CGGT--TTTTG 92 consensus_13644#2 TACACCCAGAT-ACCGGTATACCGG---CCGAGGATG-ATCGCCGGTC-CGATGGTCCTG 409 consensus_13644#0 AACGGTCTCCTTGTTGCCTTCTCCGAGCAGGGGCCTTTACGAGAGGTGGTGATGGATGTG 531 consensus_13644#1 CGCGCCGCCGA-ACAGCGCCCGCAGCGCCGCGCTCGCCGCCGCCGAGCCGGCCACCTGCG 518 consensus_13644#3 AATGTATAGCC-AAGCTCAAACAAGTTCTCCAATCCCTATGACC--CTACAATAATTCTG 392 * * consensus_13644#4 GCGCAGTTGCTGG-CGC-------GTGGGCCTACA--ATCTTATCCGGTTCACCGACAAA 374 consensus_13644#5 GCGCAGTTGCTGG-CGC-------GTGGGCCTACA--ATCTTATCCGGTTCACCGACAAA 201 consensus_13644#6 GCGCAGTTGCTGG-CGC-------GTGGGCCTACA--ATNTTATCCGGTTCNCCGACAAA 142 consensus_13644#2 GCCGGGTTCATGGACGCTCCTGATATTGGCCTGCAG-ATTATGTCCAATTGAATATTATT 468 consensus_13644#0 AAGTGGGAAGTGGAGGAAG--GGGAGCTGCTGAAGG-ATTGCCTCAAGGTGGGAGCTAAG 588 consensus_13644#1 CCGCCGCGTACGCCGGCACC---CGCCGCCACGGGA-ACCTGCCGCAGGTGGCGAACGCG 574 consensus_13644#3 CAGAGAACAATAAAGAATTCAGTAGCATAACAACACTATAACAGACAAAGGAAAGATCAA 452 * consensus_13644#4 CCGCTAAGAGAGATCACCATGACTGC-----ATCCTTCATTAG---AAGCACAAGGAGGA 426 consensus_13644#5 CCGCTAAGAGAGATCACCATGACTGC-----ATCCTTCATTAG---AAGCACAAGGAGGA 253 consensus_13644#6 CCGNTAAGAGAGATCNCCATGACTGC-----ATCCTTCATTAG---AAGCNCAAGGAGGA 194 consensus_13644#2 GTCATTGACTAAATTGA-AGAAATCC-----ATATATGACTAGCTAAACCATACAGAGAG 522 consensus_13644#0 GACTTGGAGGGGTTGCTTGTCATTGCCAAAGATCTCTTATTTG--GGGCCACAAGGACTT 646 consensus_13644#1 AGGGTGACCGCCGGGTTGAGGTGCGCGCCGGAGATGTGGCCGAC-GGAGTACACCATCAC 633 consensus_13644#3 GATCAGAATTTCCCATGTGGCTTGTTTTTAGAGGCGCATGTGGTAGTAGCATCCAAAATT 512 * consensus_13644#4 ACTAG-----GTCCCAGAAT-TGA--TCAGTTTTATTGTGG--TAAAACGTTTCCTTTTT 476 consensus_13644#5 ACTAG-----GTCCCAGAAT-TGA--TCAGTTTTATTGTGG--TAAAATGTTTCCTTTTT 303 consensus_13644#6 ACTAG-----GTCCCAGAAT-TGA--TCAGTTTTATTGTGG--TAAAATGTTTCCTTTTT 244 consensus_13644#2 AATAGAGCATGTACCATGAT-AAT--ACGGAGTAACTAATG--TCATTAAATGACTTTTT 577 consensus_13644#0 CTTCGCGCCACAACGAACTT-TGAGGTTTGGTACATTGGAGACTCGCTGTGCTCCTGTTC 705 consensus_13644#1 CATCACGGCGAGCCCCCACG-TGAT-GCAGATCCCCGGGAACGTCACCGTGCCTCCCGTC 691 consensus_13644#3 TTCAGTAATAATATACTGTTGCGGCTACGGCAAAATCCCAA---AAAAGAATTATCTGTT 569 * * consensus_13644#4 TTTTTCTGTAGCTAGTGATGTTGATGGAATGAATGGGCAGTAAAAGTAATTGACACTG-- 534 consensus_13644#5 TTTTTCTGTAGCTAGTGATGTTGATGGAATGAATGGGCAGTAAAAGTAATTGACACTG-- 361 consensus_13644#6 TTTT-CTGTAGCTAGTGATGTTGATGGAATGAATGGGCAGTAAAAGTAATTGACNCTG-- 301 consensus_13644#2 CTGCTGTGCAAGTAGAGGTCATTTACTGCTGTGCAAGTAGAGGAGAGAAAAAAATGTG-- 635 consensus_13644#0 TTTCATTTGAACTAATGAAATTAAACTTAAGT-TCAGTATTAGAAATCCAGAACTTCGGT 764 consensus_13644#1 CTCTTGTTCACC-------GCCACCGTCGCGCACC--CCGCGAAGATGAGGAAGAACG-- 740 consensus_13644#3 CTTGTTTGCGAGTCATTGTCGCCTTCATGGAGCCAAGTCTTCAACATGATTGCGTCTTGG 629 * * * consensus_13644#4 TGATTGCATAGATTTTACATGCTTTGGT---------TGGCTTGTTGTAGCTTAAATGGT 585 consensus_13644#5 TGATTGCATAGATTTTACATGCTTTGGT---------TGGCTTGTTGTAGCTTAAATGGT 412 consensus_13644#6 TGATTGCATAGATTTTACATGCTTTGGT---------TGGCTTGTTGTAGCTTAAATGGT 352 consensus_13644#2 TTTCTTTGCAGCATTGGCATAGTTTATC---------GAGAATTATTTCACAGAAGTTTC 686 consensus_13644#0 TAACATTACATCCTGCAGACCACCTAGTAACTACCGGTGTGATATTATACCCAGCGTTTC 824 consensus_13644#1 -TCCCCAAGATCTCCGCGATCACCTTCTG--CGCGAATTGGACAGAGAACATGGGGTGGT 797 consensus_13644#3 TCATCG-GCAGCAATAGTAGCTTTCACAG---AAATTAGGATTGGGTTGGCTACTATGAC 685 * * * consensus_13644#4 GAAGGATTGGGT-TACTTGTTGTAATTATCATTCTGAAGAAAAACATTGACACCAA-TGG 643 consensus_13644#5 GAAGGATTGGGT-TACTTGTTGTAATTATCATTCTGAAGAAAAACATTGACCCCAAATGG 471 consensus_13644#6 GAAGGATTGGGT-TACTTGTTGTAATTATCATTNTGAAGAAAAACATTGACCCCNAAAAA 411 consensus_13644#2 CTTCTTTTGAAAACGGAGGCGGTAATAAATGTCTCCAAAATATTTTTTAAAAAAATAAAT 746 consensus_13644#0 ATACCCGAGAAAATTTTTGTGTGAAGATGCATAGTTGAAATATACTCCCTCCGTCCCAAA 884 consensus_13644#1 TATTACTAGAGC--TCTTGCTTCCTCCATCTTGCTCTGAATTCTCACACCTTGCTTGATG 855 consensus_13644#3 AAGCAATTGTTGTCAATCTTGGGATCAAACGATGAACACGACATTGCTGCTAATGATAGA 745 * consensus_13644#4 CTGTGCTAGAATTTTGATAAGATTTATTTTTATTTGAGCATTATCGATCACATCAAAAA- 702 consensus_13644#5 CTGTGCTAGAATTTTGATAAGATTTATTTTTATTTGAGCAAAAAAAAAAAAA-------- 523 consensus_13644#6 AAAAAAAAAAAAAAA--------------------------------------------- 426 consensus_13644#2 TTATATAAGTACTTATAGTATTACTACACCTACTTATAGACTTTTAACTGAAAAA----- 801 consensus_13644#0 ATACTTGTCGTTTTGAGTTTTTGTTTGTAACGTTTGACGACTAGTCGTATTCAAAAGATT 944 consensus_13644#1 ATCTCTGCTGCCTTCCTCCATAGCTCTGGTTTCTTCATG-CTGGCCATTAACTCCATGCT 914 consensus_13644#3 TGATGATGATGAATTGCTGTTTGTAAAATCAAAGTGTGTTTGATTC-------------- 791 consensus_13644#4 ------------------------------------------------------------ consensus_13644#5 ------------------------------------------------------------ consensus_13644#6 ------------------------------------------------------------ consensus_13644#2 ------------------------------------------------------------ consensus_13644#0 ATGGAATTATTATTTATTTTGTTTGTGACTTGCTTTATTATTAAAAGTACTTTAAGTATG 1004 consensus_13644#1 CTCCTCCAGCCATCTCTTCTCTCTCTCTCTAGATTCTCTCTCTGAAAT-CTCTAGCTATG 973 consensus_13644#3 ------------------------------------------------------------ consensus_13644#4 ------------------------------------------------------------ consensus_13644#5 ------------------------------------------------------------ consensus_13644#6 ------------------------------------------------------------ consensus_13644#2 ------------------------------------------------------------ consensus_13644#0 ACATTTTTTTTTAATATTTGCACTAATTTTTTAAATAAGACGAATGGTCAAACGTTGCAA 1064 consensus_13644#1 A---TCTTATCCTGTTCTTCCTCTACTGCTCTGAACTTC-TGAATAACTGAAGATAACAA 1029 consensus_13644#3 ------------------------------------------------------------ consensus_13644#4 ------------------------------------------------------------ consensus_13644#5 ------------------------------------------------------------ consensus_13644#6 ------------------------------------------------------------ consensus_13644#2 ------------------------------------------------------------ consensus_13644#0 GCAAAAAGTCAAAACAACATCTAATTTGGGACGGAGGTAGTATCTTCTAGTGGTTAATGA 1124 consensus_13644#1 G--AAGATGCAGCTTGGTCTCTACTATTTATGGCCTTCAGCTCGG--------------- 1072 consensus_13644#3 ------------------------------------------------------------ consensus_13644#4 ------------------------------------------------------------ consensus_13644#5 ------------------------------------------------------------ consensus_13644#6 ------------------------------------------------------------ consensus_13644#2 ------------------------------------------------------------ consensus_13644#0 ATCGTAGTCATTGCGAAGTGTTCATTATCGATACACATATTCTGGTGGATAATTAATGAA 1184 consensus_13644#1 ------------------------------------------------------------ consensus_13644#3 ------------------------------------------------------------ consensus_13644#4 -- consensus_13644#5 -- consensus_13644#6 -- consensus_13644#2 -- consensus_13644#0 AA 1186 consensus_13644#1 -- consensus_13644#3 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||