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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13644#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1186 fasta sequence
[TTTCCAATGGCCCTAGCCGGAGCCCCTCGCCGCCGGCGAGCTACACGTTCGCGTCTCCCCCCCACTCTCCTCCTCATCGTCCTCCTCCTCCTCGGCGGGGCTCCTCGTGCTTCCGCGCTCCGCGTCCCGCTTCGCGAGGTCGCCACCCTCCTCAACCTCTCCCGCTCCCTCCTCAACCGCGTCGCCGCCGCCCGCGCGGCCCGTGGAGACGACTTTGCGGCGTCCCGCGCGCGCAGGATCGCCTCCCATCTCTCCCTCTTCTCATCCCGCGGCGCGTGGGCACTCTCTTGGGACTACCTCCGCCACTACGCCTTCTCGTCGGCTGCCGGGTGCGGCCTCTCCTGCGCCACCGCCGCTGCTCGCCTCCTCGCTGCTGCTGCGGAGGTCTCGCGCCTGCATTCCGCCACCGACGCCGCCCAGTGGCTGCGCCGCAATTACGGGGACGTCCGCGACGCGGCCGCGCAGCTCCTCAACGGTCTCCTTGTTGCCTTCTCCGAGCAGGGGCCTTTACGAGAGGTGGTGATGGATGTGAAGTGGGAAGTGGAGGAAGGGGAGCTGCTGAAGGATTGCCTCAAGGTGGGAGCTAAGGACTTGGAGGGGTTGCTTGTCATTGCCAAAGATCTCTTATTTGGGGCCACAAGGACTTCTTCGCGCCACAACGAACTTTGAGGTTTGGTACATTGGAGACTCGCTGTGCTCCTGTTCTTTCATTTGAACTAATGAAATTAAACTTAAGTTCAGTATTAGAAATCCAGAACTTCGGTTAACATTACATCCTGCAGACCACCTAGTAACTACCGGTGTGATATTATACCCAGCGTTTCATACCCGAGAAAATTTTTGTGTGAAGATGCATAGTTGAAATATACTCCCTCCGTCCCAAAATACTTGTCGTTTTGAGTTTTTGTTTGTAACGTTTGACGACTAGTCGTATTCAAAAGATTATGGAATTATTATTTATTTTGTTTGTGACTTGCTTTATTATTAAAAGTACTTTAAGTATGACATTTTTTTTTAATATTTGCACTAATTTTTTAAATAAGACGAATGGTCAAACGTTGCAAGCAAAAAGTCAAAACAACATCTAATTTGGGACGGAGGTAGTATCTTCTAGTGGTTAATGAATCGTAGTCATTGCGAAGTGTTCATTATCGATACACATATTCTGGTGGATAATTAATGAAAA]
[+] EMBL AK102017 [TTTCCAATGGCCCTAGCCGGAGCCCCTCGCCGCCGGCGAGCTACACGTTCGCGTCTCCCCCCCACTCTCCTCCTCATCGTCCTCCTCCTCCTCGGCGGGGCTCCTCGTGCTTCCGCGCTCCGCGTCCCGCTTCGCGAGGTCGCCACCCTCCTCAACCTCTCCCGCTCCCTCCTCAACCGCGTCGCCGCCGCCCGCGCGGCCCGTGGAGACGACTTTGCGGCGTCCCGCGCGCGCAGGATCGCCTCCCATCTCTCCCTCTTCTCATCCCGCGGCGCGTGGGCACTCTCTTGGGACTACCTCCGCCACTACGCCTTCTCGTCGGCTGCCGGGTGCGGCCTCTCCTGCGCCACCGCCGCTGCTCGCCTCCTCGCTGCTGCTGCGGAGGTCTCGCGCCTGCATTCCGCCACCGACGCCGCCCAGTGGCTGCGCCGCAATTACGGGGACGTCCGCGACGCGGCCGCGCAGCTCCTCAACGGTCTCCTTGTTGCCTTCTCCGAGCAGGGGCCTTTACGAGAGGTGGTGATGGATGTGAAGTGGGAAGTGGAGGAAGGGGAGCTGCTGAAGGATTGCCTCAAGGTGGGAGCTAAGGACTTGGAGGGGTTGCTTGTCATTGCCAAAGATCTCTTATTTGGGGCCACAAGGACTTCTTCGCGCCACAACGAACTTTGAGGTTTGGTACATTGGAGACTCGCTGTGCTCCTGTTCTTTCATTTGAACTAATGAAATTAAACTTAAGTTCAGTATTAGAAATCCAGAACTTCGGTTAACATTACATCCTGCAGACCACCTAGTAACTACCGGTGTGATATTATACCCAGCGTTTCATACCCGAGAAAATTTTTGTGTGAAGATGCATAGTTGAAATATACTCCCTCCGTCCCAAAATACTTGTCGTTTTGAGTTTTTGTTTGTAACGTTTGACGACTAGTCGTATTCAAAAGATTATGGAATTATTATTTATTTTGTTTGTGACTTGCTTTATTATTAAAAGTACTTTAAGTATGACATTTTTTTTTAATATTTGCACTAATTTTTTAAATAAGACGAATGGTCAAACGTTGCAAGCAAAAAGTCAAAACAACATCTAATTTGGGACGGAGGTAGTATCTTCTAGTGGTTAATGAATCGTAGTCATTGCGAAGTGTTCATTATCGATACACATATTCTGGTGGATAATTAATGAAAA]
consensusID : consensus_13644#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1072 fasta sequence
[CCGTCCCAAAATACTTGTCGTTTTGAGTTTTTGTTTGTAACGTTTGATCATTCATCTTATTAAAGAGATTATGGAATTATTATTTATTTTGTTTGTGACTTGCTTTATTATCAAAAGTACTTTAAGTATGACTTATCATTTTTATATTTGCACTAATTTTTTAAATAAGATGAATGGTCAAACGTTGCAAGCGAAAAGTTAGAATGACATCTAATTAGGTTAGAATGACATCTAATTAGGAACGGAAGGAGTAATATCAATGGTTCAAGACGTGTACCCAGCAAAGAGCACATTTACTAAGACGGTAGCTCCAACGGCAAGGCCAGCTAGTTCACCAATAGCTCGGTTGTCGGTGGCGACGCCGGAGACGACGAACATGAGGTAGAAGGTGATGATGAACTCCATCGCCAGCGACTGCACGTCGGACCCGGCCGGCGCCGTCCCGAAGAAGTGCTCCGGCGCGCCGCCGAACAGCGCCCGCAGCGCCGCGCTCGCCGCCGCCGAGCCGGCCACCTGCGCCGCCGCGTACGCCGGCACCCGCCGCCACGGGAACCTGCCGCAGGTGGCGAACGCGAGGGTGACCGCCGGGTTGAGGTGCGCGCCGGAGATGTGGCCGACGGAGTACACCATCACCATCACGGCGAGCCCCCACGTGATGCAGATCCCCGGGAACGTCACCGTGCCTCCCGTCCTCTTGTTCACCGCCACCGTCGCGCACCCCGCGAAGATGAGGAAGAACGTCCCCAAGATCTCCGCGATCACCTTCTGCGCGAATTGGACAGAGAACATGGGGTGGTTATTACTAGAGCTCTTGCTTCCTCCATCTTGCTCTGAATTCTCACACCTTGCTTGATGATCTCTGCTGCCTTCCTCCATAGCTCTGGTTTCTTCATGCTGGCCATTAACTCCATGCTCTCCTCCAGCCATCTCTTCTCTCTCTCTCTAGATTCTCTCTCTGAAATCTCTAGCTATGATCTTATCCTGTTCTTCCTCTACTGCTCTGAACTTCTGAATAACTGAAGATAACAAGAAGATGCAGCTTGGTCTCTACTATTTATGGCCTTCAGCTCGG]
[-] EMBL CF325536 [CCGTCCCAAAATACTTGTCGTTTTGAGTTTTTGTTTGTAACGTTTGATCATTCATCTTATTAAAGAGATTATGGAATTATTATTTATTTTGTTTGTGACTTGCTTTATTATCAAAAGTACTTTAAGTATGACTTATCATTTTTATATTTGCACTAATTTTTTAAATAAGATGAATGGTCAAACGTTGCAAGCGAAAAGTTAGAATGACATCTAATTAGGTTAGAATGACATCTAATTAGGAACGGAAGGAGTAATATCAATGGTTCAAGACGTGTACCCAGCAAAGAGCACATTTACTAAGACGGTAGCTCCAACGGCAAGGCCAGCTAGTTCACCAATAGCTCGGTTGTCGGTGGCGACGCCGGAGACGACGAACATGAGGTAGAAGGTGATGATGAACTCCATCGCCAGCGACTGCACGTCGGACCCGGCCGGCGCCGTCCCGAAGAAGTGCTCCGGCGCGCCGCCGAACAGCGCCCGCAGCGCCGCGCTCGCCGCCGCCGAGCCGGCCACCTGCGCCGCCG ]
[-] EMBL CB675614 [ AAAAGTTAGAATGACATCTAATTAGGTTAGAATGACATCTAATTAGGAACGGAAGGAGTAATATCAATGGTTCAAGACGTGTACCCAGCAAAGAGCACATTTACTAAGACGGTAGCTCCAACGGCAAGGCCAGCTAGTTCACCAATAGCTCGGTTGTCGGTGGCGACGCCGGAGACGACGAACATGAGGTAGAAGGTGATGATGAACTCCATCGCCAGCGACTGCACGTCGGACCCGGCCGGCGCCGTCCCGAAGAAGTGCTCCGGCGCGCCGCCGAACAGCGCCCGCAGCGCCGCGCTCGCCGCCGCCGAGCCGGCCACCTGCGCCGCCGCGTACGCCGGCACCCGCCGCCACGGGAACCTGCCGCAGGTGGCGAACGCGAGGGTGACCGCCGGGTTGAGGTGCGCGCCGGAGATGTGGCCGACGGAGTACACCATCACCATCACGGCGAGCCCCCACGTGATGCAGATCCCCGGGAACGTCACCGTGCCTCCCGTCCTCTTGTTCACCGCCACCGCCGCGCACCCCGCGAAGATGAGGAAGAACGTCCCCAAGATCTCCGCGATCACCTTCTGCGCGAATTGGACAGAGAACATGGGGTGGTTATTACTAGAGCTCTTGCTTCCTCCATCTTGCTCTGAATTCTCACACCTTGCTTGATGATCTCTGCTGCCTTCCTCCATAGCTCTGGTTTCTTCATGCTGGCCATTAACTCCATGCTCTCCTCCAGCCATCTCTTCTCTCTCTCTCTAGATTCTCTCTCTGAAATCTCTAGCTATGATCTTATC ]
[-] EMBL OSS4247A [ GATCCCCGGNAACGTCACCGTGCCTCCCGTCCTCTTGTTCACCGCCACCGTCGCGCACCCCGCGAAGATGAGGAAGAACGTCCCCAAGATCTCCGCGATCACCTTCTGCGCGAATTGGACAGAGAACATGGGGTGGTTATTACTAGAGCTCTTGCTTCCTCCATCTTGCTCTGAATTCTCACACCTTGCTTGATGATCTCTGCTGCCTTCCTCCATAGCTCTGGTTTCTTCATGCTGGCCATTAACTCCATGCTCTCCTCCAGCCATCTCTTCTCTCTCTCTCTAGATTCTCTCTCTGAAATCTCTAGCTATGATCTTATCCTGTTCTTCCTCTACTGCTCT ]
[-] EMBL OSS2921A [ CCGTGCCTCCCGTCCTCTTGTTCACCGCNACCGTCGCGAACACCGCGAAGATGAGGAAGAACGTCCCCAAGATCTCCGCGATCACCTTCTGCGCGAATTGGACAGAGAACATGGGGTGGTTATTACTAGAGCTCTTGCTTCCTCCATCTTGCTCTGAATTCTCACACCTTGCTTGATGATCTCTGCTGCCTTCCTCCATAGCTCTGGTTTCTTCATGCTGGCCATTAACTCNATGCTCTCCTCCAGCCATCTCTTCTCTCTCTCTCTAGATTCTCTCTCTGAAATCTCTAGCTATGATCTTATCCTGTTCTTCCTCTACTGCTCTG ]
[-] EMBL OSS2126A [ TCCATCTTGCTCTGAATTCTCACACCTTGCTTGATGATCTCTGCTGCCTTCCTCCATAGCTCTGGTTTCTTCATGCTGGCCATTAACTCCATGCTCTCCTCCAGCCATCTCTTCTCTCTCTCTCTAGATTCTCTCTCTGAAATCTCTAGCTATGATCTTATCCTGTTCTTCCTCTACTGCTCTGAACTTCTGAATAACTGAAGATAACAAGAAGATGCAGCTTGGTCTCTACTATTTATGGCCTTCAGCTCGG]
consensusID : consensus_13644#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 801 fasta sequence
[GCAAATTCTAGCACAGCCATTTGGTGTCAATGTTTTTCTTCAGAATGATAATTACAACAAGTAACCCAATCCTTCACCATTTAAGCTACAACAAGCCAACCAAAGCATGTAAAATCTATGCAATCACAGTGTCAATTACTTTTACTGCCCATTCATTCCATCAACATCACTAGCTACAGAAAAAAAAAGGAAACATTTTACCACAATAAAACTGATCAATTCTGGGACCTAGTTCCTCCTTGTGCTTCTAATGAAGGATGCAGTCATGGTGATCTCTCTTAGCGGTTTGTCGGTGAACCGGATAAGATTGTAGGCCCACGCGCCAGCAACTGCGCCAAAAACCGGGCCGGCGATGTACACCCAGATACCGGTATACCGGCCGAGGATGATCGCCGGTCCGATGGTCCTGGCCGGGTTCATGGACGCTCCTGATATTGGCCTGCAGATTATGTCCAATTGAATATTATTGTCATTGACTAAATTGAAGAAATCCATATATGACTAGCTAAACCATACAGAGAGAATAGAGCATGTACCATGATAATACGGAGTAACTAATGTCATTAAATGACTTTTTCTGCTGTGCAAGTAGAGGTCATTTACTGCTGTGCAAGTAGAGGAGAGAAAAAAATGTGTTTCTTTGCAGCATTGGCATAGTTTATCGAGAATTATTTCACAGAAGTTTCCTTCTTTTGAAAACGGAGGCGGTAATAAATGTCTCCAAAATATTTTTTAAAAAAATAAATTTATATAAGTACTTATAGTATTACTACACCTACTTATAGACTTTTAACTGAAAAA]
[+] EMBL CB675615 [GCAAATTCTAGCACAGCCATTTGGTGTCAATGTTTTTCTTCAGAATGATAATTACAACAAGTAACCCAATCCTTCACCATTTAAGCTACAACAAGCCAACCAAAGCATGTAAAATCTATGCAATCACAGTGTCAATTACTTTTACTGCCCATTCATTCCATCAACATCACTAGCTACAGAAAAAAAAAGGAAACATTTTACCACAATAAAACTGATCAATTCTGGGACCTAGTTCCTCCTTGTGCTTCTAATGAAGGATGCAGTCATGGTGATCTCTCTTAGCGGTTTGTCGGTGAACCGGATAAGATTGTAGGCCCACGCGCCAGCAACTGCGCCAAAAACCGGGCCGGCGATGTACACCCAGATACCGGTATACCGGCCGAGGATGATCGCCGGTCCGATGGTCCTGGCCGGGTTCATGGACGCTCCTGATATTGGCCTGCAGATTATGTCCAATTGAATATTATTGTCATTGACTAAATTGAAGAAATCCATATATGACTAGCTAAACCATACAGAGAGAATAGAGCATGTACCATGATAATACGGAGTAACTAATGTCATTAAATGACTTTTTCTGCTGTGCAAGTAGAGGTCATTTACTGCTGTGCAAGTAGAGGAGAGAAAAAAATGTGTTTCTTTGCAGCATTGGCATAGTTTATCGAGAATTATTTCACAGAAGTTTCCTTCTTTTGAAAACGGAGGCGGTAATAAATGTCTCCAAAATATTTTTTAAAAAAATAAATTTATATAAGTACTTATAGTATTACTACACCTACTTATAGACTTTTAACTGAAAAA]
[-] EMBL AK062320 [ AGTGTCAATTACTTTTACTGCCCATTCATTCCATCAACATCACTAGCTACAGAAAAAAAAAGGAAACATTTTACCACAATAAAACTGATCAATTCTGGGACCTAGTTCCTCCTTGTGCTTCTAATGAAGGATGCAGTCATGGTGATCTCTCTTAGCGGTTTGTCGGTGAACCGGATAAGATTGTAGGCCCACGCGCCAGCAACTGCGCCAAAAACCGGGCCGGCGATGTACACCCAGATACCGGTATACCGGCCGAGGATGATCGCCGGTCCGATGGTCCTGGCCGGGTTCATGGACGCTCCTGATATTGGCCTGCAGATTATGTCCAATTGAATATTATTGTCATTGACTAAATTGAAGAAATCCATATATGACTAGCTAAACCATACAGAGAGAATAGAGCATGTACCATGATAATACGGAGTAACTAATGTCATTAAATGACTTTTTCTGCTGTGCAAGTAGAGGTCATTTACTGCTGTGCAAGTAGAGGAGAGAAAAAAATGTGTTTCTTTGCAGCATTGGCATAGTTTATCGAG ]
consensusID : consensus_13644#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 791 fasta sequence
[AGCAGTCCTGGAAGAACAGGATAAGATCATAGCTAGAGATTTCAGAGAGAGAATCTAGAGAGAGAGAGAAGAGATGGCTGGAGGAGAGCATGGAGTTAATGGCCAGCATGAAGAAACCAGAGCTATGGAGGAAGGCAGCAGAGATCATCAAGCAAGGTGTGAGAATTCAGAGCAAGATGGAGGAAGCAAGAGCTCTAGTAATAACCACCCCATGTTCTCTGTCCAATTCGCGCAGAAGGTATGTGCACATCTCAGACCAAGATGGTTTCATTTTGATCAAATTCATCTTGAGTTTCCCTCTCATAGATATATGTAGTATTTCCCTTTGATCCTGGAATGTATAGCCAAGCTCAAACAAGTTCTCCAATCCCTATGACCCTACAATAATTCTGCAGAGAACAATAAAGAATTCAGTAGCATAACAACACTATAACAGACAAAGGAAAGATCAAGATCAGAATTTCCCATGTGGCTTGTTTTTAGAGGCGCATGTGGTAGTAGCATCCAAAATTTTCAGTAATAATATACTGTTGCGGCTACGGCAAAATCCCAAAAAAGAATTATCTGTTCTTGTTTGCGAGTCATTGTCGCCTTCATGGAGCCAAGTCTTCAACATGATTGCGTCTTGGTCATCGGCAGCAATAGTAGCTTTCACAGAAATTAGGATTGGGTTGGCTACTATGACAAGCAATTGTTGTCAATCTTGGGATCAAACGATGAACACGACATTGCTGCTAATGATAGATGATGATGATGAATTGCTGTTTGTAAAATCAAAGTGTGTTTGATTC]
[+] EMBL CB649038 [AGCAGTCCTGGAAGAACAGGATAAGATCATAGCTAGAGATTTCAGAGAGAGAATCTAGAGAGAGAGAGAAGAGATGGCTGGAGGAGAGCATGGAGTTAATGGCCAGCATGAAGAAACCAGAGCTATGGAGGAAGGCAGCAGAGATCATCAAGCAAGGTGTGAGAATTCAGAGCAAGATGGAGGAAGCAAGAGCTCTAGTAATAACCACCCCATGTTCTCTGTCCAATTCGCGCAGAAGGTATGTGCACATCTCAGACCAAGATGGTTTCATTTTGATCAAATTCATCTTGAGTTTCCCTCTCATAGATATATGTAGTATTTCCCTTTGATCCTGGAATGTATAGCCAAGCTCAAACAAGTTCTCCAATCCCTATGACCCTACAATAATTCTGCAGAGAACAATAAAGAATTCAGTAGCATAACAACACTATAACAGACAAAGGAAAGATCAAGATCAGAATTTCCCATGTGGCTTGTTTTTAGAGGCGCATGTGGTAGTAGCATCCAAAATTTTCAGTAATAATATACTGTTGCGGCTACGGCAAAATCCCAAAAAAGAATTATCTGTTCTTGTTTGCGAGTCATTGTCGCCTTCATGGAGCCAAGTCTTCAACATGATTGCGTCTTGGTCATCGGCAGCAATAGTAGCTTTCACAGAAATTAGGATTGGGTTGGCTACTATGACAAGCAATTGTTGTCAATCTTGGGATCAAACGATGAACACGACATTGCTGCTAATGATAGATGATGATGATGAATTGCTGTTTGTAAAATCAAAGTGTGTTTGATTC]
consensusID : consensus_13644#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence
[TCGCGGCGCGGAGCCGGCGCTCGGCCTTTTCGCGCGCGCCGGAGCACTTTCTTCGGGACGGCGCCGCCGGGTCCGACGTGCAGTCGCTGGCGATGGAGTTCATCATCACCTTCTACCTCATGTTCGTCGTCTCCGGCGTCGCCACCGACAACCGAGCTATTGGTGAACTAGCTGGCCTTGCCGTTGGAGCTACCGTCTTAGTAAATGTGCTCTTTGCTGGGCCAATATCAGGAGCGTCCATGAACCCGGCCAGGACCATCGGACCGGCGATCATCCTTGGCCGGTATACCGGTATCTGGGTGTACATCGCCGGCCCGGTTTTCGGCGCAGTTGCTGGCGCGTGGGCCTACAATCTTATCCGGTTCACCGACAAACCGCTAAGAGAGATCACCATGACTGCATCCTTCATTAGAAGCACAAGGAGGAACTAGGTCCCAGAATTGATCAGTTTTATTGTGGTAAAACGTTTCCTTTTTTTTTTCTGTAGCTAGTGATGTTGATGGAATGAATGGGCAGTAAAAGTAATTGACACTGTGATTGCATAGATTTTACATGCTTTGGTTGGCTTGTTGTAGCTTAAATGGTGAAGGATTGGGTTACTTGTTGTAATTATCATTCTGAAGAAAAACATTGACACCAATGGCTGTGCTAGAATTTTGATAAGATTTATTTTTATTTGAGCATTATCGATCACATCAAAAA]
[+] EMBL BQ907051 [TCGCGGCGCGGAGCCGGCGCTCGGCCTTTTCGCGCGCGCCGGAGCACTTTCTTCGGGACGGCGCCGCCGGGTCCGACGTGCAGTCGCTGGCGATGGAGTTCATCATCACCTTCTACCTCATGTTCGTCGTCTCCGGCGTCGCCACCGACAACCGAGCTATTGGTGAACTAGCTGGCCTTGCCGTTGGAGCTACCGTCTTAGTAAATGTGCTCTTTGCTGGGCCAATATCAGGAGCGTCCATGAACCCGGCCAGGACCATCGGACCGGCGATCATCCTTGGCCGGTATACCGGTATCTGGGTGTACATCGCCGGCCCGGTTTTCGGCGCAGTTGCTGGCGCGTGGGCCTACAATCTTATCCGGTTCACCGACAAACCGCTAAGAGAGATCACCATGACTGCATCCTTCATTAGAAGCACAAGGAGGAACTAGGTCCCAGAATTGATCAGTTTTATTGTGGTAAAACGTTTCCTTTTTTTTTTCTGTAGCTAGTGATGTTGATGGAATGAATGGGCAGTAAAAGTAATTGACACTGTGATTGCATAGATTTTACATGCTTTGGTTGGCTTGTTGTAGCTTAAATGGTGAAGGATTGGGTTACTTGTTGTAATTATCATTCTGAAGAAAAACATTGACACCAATGGCTGTGCTAGAATTTTGATAAGATTTATTTTTATTTGAGCATTATCGATCACATCAAAAA]
consensusID : consensus_13644#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence
[GGCCTTGCCGTTGGAGCTACCGTCTTAGTAAATGTGCTCTTTGCTGGGCCAATATCAGGAGCGTCCATGAACCCGGCCAGGACCATCGGACCGGCGATCATCCTTGGCCGGTATACCGGTATCTGGGTGTACATCGCCGGCCCGGTTTTCGGCGCAGTTGCTGGCGCGTGGGCCTACAATCTTATCCGGTTCACCGACAAACCGCTAAGAGAGATCACCATGACTGCATCCTTCATTAGAAGCACAAGGAGGAACTAGGTCCCAGAATTGATCAGTTTTATTGTGGTAAAATGTTTCCTTTTTTTTTTCTGTAGCTAGTGATGTTGATGGAATGAATGGGCAGTAAAAGTAATTGACACTGTGATTGCATAGATTTTACATGCTTTGGTTGGCTTGTTGTAGCTTAAATGGTGAAGGATTGGGTTACTTGTTGTAATTATCATTCTGAAGAAAAACATTGACCCCAAATGGCTGTGCTAGAATTTTGATAAGATTTATTTTTATTTGAGCAAAAAAAAAAAAA]
[+] EMBL CA761957 [GGCCTTGCCGTTGGAGCTACCGTCTTAGTAAATGTGCTCTTTGCTGGGCCAATATCAGGAGCGTCCATGAACCCGGCCAGGACCATCGGACCGGCGATCATCCTTGGCCGGTATACCGGTATCTGGGTGTACATCGCCGGCCCGGTTTTCGGCGCAGTTGCTGGCGCGTGGGCCTACAATCTTATCCGGTTCACCGACAAACCGCTAAGAGAGATCACCATGACTGCATCCTTCATTAGAAGCACAAGGAGGAACTAGGTCCCAGAATTGATCAGTTTTATTGTGGTAAAATGTTTCCTTTTTTTTTTCTGTAGCTAGTGATGTTGATGGAATGAATGGGCAGTAAAAGTAATTGACACTGTGATTGCATAGATTTTACATGCTTTGGTTGGCTTGTTGTAGCTTAAATGGTGAAGGATTGGGTTACTTGTTGTAATTATCATTCTGAAGAAAAACATTGACCCCAAATGGCTGTGCTAGAATTTTGATAAGATTTATTTTTATTTGAGCAAAAAAAAAAAAA]
consensusID : consensus_13644#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 426 fasta sequence
[AGCGTCCATGAACCCGGCCAGGACCNTCGGACCGGCGATCATCCTCGGCCGGTATACCGGTATTTGGGTGTACATCGCCGGCCCGGTTTTTGGCGCAGTTGCTGGCGCGTGGGCCTACAATNTTATCCGGTTCNCCGACAAACCGNTAAGAGAGATCNCCATGACTGCATCCTTCATTAGAAGCNCAAGGAGGAACTAGGTCCCAGAATTGATCAGTTTTATTGTGGTAAAATGTTTCC--TTTTTTTTTCTGTAGCTAGTGATGTTGATGGAATGAATGGGCAGTAAAAGTAATTGACNCTGTGATTGCATAGATTTTACATGCTTTGGTTGGCTTGTTGTAGCTTAAATGGTGAAGGATTGGGTTACTTGTTGTAATTATCATTNTGAAGAAAAACATTGACCCCNAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU223003 [AGCGTCCATGAACCCGGCCAGGACCNTCGGACCGGCGATCATCCTCGGCCGGTATACCGGTATTTGGGTGTACATCGCCGGCCCGGTTTTTGGCGCAGTTGCTGGCGCGTGGGCCTACAATNTTATCCGGTTCNCCGACAAACCGNTAAGAGAGATCNCCATGACTGCATCCTTCATTAGAAGCNCAAGGAGGAACTAGGTCCCAGAATTGATCAGTTTTATTGTGGTAAAATGTTTCC TTTTTTTTTCTGTAGCTAGTGATGTTGATGGAATGAATGGGCAGTAAAAGTAATTGACNCTGTGATTGCATAGATTTTACATGCTTTGGTTGGCTTGTTGTAGCTTAAATGGTGAAGGATTGGGTTACTTGTTGTAATTATCATTNTGAAGAAAAACATTGACCCCNAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU222949 [ TAAGAGAGATCTCCATGACTGCATCCTTCATTAGAAGCACAAGGAGGAANTAGGTCCCAGAATTGNTCAGTTTTATTGTGGTAAAATNTTTCCTTTTTTTTTTTCTGTAGCTAGTGATGTTNATGGAATGAATGGGCAGTAAAAGTAATTGACNCTGTGATTGCATAGATTTTACATGCTTTGGTTGGCTTGTTGTAGCTTAAATGGTGAAGGATTGGGTTACTTGTTGTAATTATCATTCTGAAGAAAAACATTGACCCCNAAAAAAAAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13644#4 ------------------------------------------------------------
consensus_13644#5 ------------------------------------------------------------
consensus_13644#6 ------------------------------------------------------------
consensus_13644#2 ------------------------------------------------------------
consensus_13644#0 TTTCCAATGGCCCTAGCCGGAGCCCCTCGCCGCCGGCGAGCTACACGTTCGCGTCTCCCC 60
consensus_13644#1 ------------CCGTCCCAAAATACTTGTCGTTT-TGAGTT-TTTGTTTGTAACGTTTG 46
consensus_13644#3 ------------------------------------------------------------
consensus_13644#4 ------------------------------------------------------------
consensus_13644#5 ------------------------------------------------------------
consensus_13644#6 ------------------------------------------------------------
consensus_13644#2 -------------------------------------------------------GCAAA 5
consensus_13644#0 CCCACTCTCCTCCTCATCGTCCTCCTCC--TCCTCGGCGGGGCTCCTCGTGCTTCCGCGC 118
consensus_13644#1 ATCATTCATCTTATTAAAGAGATTATGGAATTATTATTTATTTTGTTTGTGACTTGCTTT 106
consensus_13644#3 ------------------------------------------------------------
consensus_13644#4 ------------------------------------------------------------
consensus_13644#5 ------------------------------------------------------------
consensus_13644#6 ------------------------------------------------------------
consensus_13644#2 TTCTAGCACAGCCATTTGGTGTCAATGTTTTTCTTCAGAATGATAATTACAACAAGTAAC 65
consensus_13644#0 TCCGCGTCCCGCTTCGCGAGGTCGCCACCCTCCTCAACCTCTCCCGCTCCCTCCTCAACC 178
consensus_13644#1 ATTATCAAAAGTACTTTAAGTATGACTTATCATTTTTATATTTGCACTAATTTTTTAAAT 166
consensus_13644#3 -------------------------AGCAGTCCTGGAAGAACAGGATAAGATCATAGCTA 35
consensus_13644#4 ---------------TCGCGGCGCGGAGCCGGCGCTCGGCCTTTTCGCGCGCGCCGGAGC 45
consensus_13644#5 ------------------------------------------------------------
consensus_13644#6 ------------------------------------------------------------
consensus_13644#2 CCAATCCTTCACCATTTAAGCTACAACAAGCCAACCAAAGCATGTAAAATCTATGCAATC 125
consensus_13644#0 GCGTCGCCGCCGCCCGCGCGGCCCGTGGAGACGACTTTGCGGCGTCCCGCGCGCGCAGGA 238
consensus_13644#1 AAGATGAATGGTCAAACGTTGCAAGCGAAAA-GTTAGAATGACATCTAATTAGGTTAGAA 225
consensus_13644#3 GAGATTTCAGAGAGAGAATCTAGAGAGAGAGAGAAGAGATGGCTGGAGGAGAGCATGGAG 95
consensus_13644#4 ACTTTCTTCGGGACGGCGCCGCCGGGT----CCGACGTGCAGTCGCTGGCGATGGAGTTC 101
consensus_13644#5 ------------------------------------------------------------
consensus_13644#6 ------------------------------------------------------------
consensus_13644#2 ACAGTGTCAATTACTTTTACTGCCCAT----TCATTCCATCAACATCACTAGCTACAGAA 181
consensus_13644#0 TCGCCTCCCATCTCTCCCTCTTCTCAT----CCCGCGGCGCGTGGGCACTCTCTTGGGAC 294
consensus_13644#1 TGACATCTAATTAGGAACGGAAGGAGTAATATCAATGGTTCAAGACGTGTACCCAGCAAA 285
consensus_13644#3 TTAATGGCCAGCATGAAGAAACCAGAGCTATGGAGGAAGGCAGCAGAGATCATCAAGCAA 155
consensus_13644#4 ATCATCACCTTCTACCTCATGTTCGTCGTCTCCGGCGTCGCCACCGACAACCGAGC-TAT 160
consensus_13644#5 ------------------------------------------------------------
consensus_13644#6 ------------------------------------------------------------
consensus_13644#2 AAAAAAAGGAAACATTTTACCACAATAAAACTGATCAATTCTGGGACCTAGTTCCT-CCT 240
consensus_13644#0 TACCTCCGCCACTACGCCTTCTCGTCGGCTGCCGGGTGCGGCCTCTCCTGCGCCAC-CGC 353
consensus_13644#1 GAGCACATTTACTAAGACGGTAGCTCCAACGGCAAGGCCAGCTAGTTCACCAATAG-CTC 344
consensus_13644#3 GGTGTGAGAATTCAGAGCAAGATGGAGGAAGCAAGAGCTCTAGTAATAACCACCCCATGT 215
consensus_13644#4 TGGTGAACTAGCTGGCCTTGCCGTTGGAGCTACCGTCT-TAGTAAATGTGCTCTTTGCTG 219
consensus_13644#5 -------------GGCCTTGCCGTTGGAGCTACCGTCT-TAGTAAATGTGCTCTTTGCTG 46
consensus_13644#6 ------------------------------------------------------------
consensus_13644#2 TGTGCTTCTAATGAAGGATGCAGTCATGGTGATCTCTC-TTAGCGGTTTGTCGGTGAACC 299
consensus_13644#0 CGCTGCTCGCCTCCTCGCTGCTGCTGCGGAGGTCTCGCGCCTGCATTCCGCCACCGACGC 413
consensus_13644#1 GGTTGTCGGTGGCGACGCCGGAG--ACGACGAACATGAGGTAGAAGGTGATGATGAACTC 402
consensus_13644#3 TCTCTGTCCAATTCGCGCAGAAGGTATGTGCACATCTCAGACCAAGATGGTTTCATTTTG 275
consensus_13644#4 GGCC--AATATCAGGAGCGTCCATG-----AACCCGGCCAGGACCATCGGACCGGCGAT- 271
consensus_13644#5 GGCC--AATATCAGGAGCGTCCATG-----AACCCGGCCAGGACCATCGGACCGGCGAT- 98
consensus_13644#6 ---------------AGCGTCCATG-----AACCCGGCCAGGACCNTCGGACCGGCGAT- 39
consensus_13644#2 GGAT--AAGATTGTAGGCCCACGCGCCAGCAACTGCGCCAAAA--ACCGGGCCGGCGATG 355
consensus_13644#0 CGCC--CAGTGGCTGCGCCGCAATTACGGGGACGTCCGCGACGCGGCCGCGCAGCTCCTC 471
consensus_13644#1 CATCGCCAGCGACTGCACGTCGGACCC---GGCCGGCGCCGTCCCGAAGAAGTGCTCCGG 459
consensus_13644#3 ATCAAATTCATCTTGAGTTTCCCTCTCATAGATATATGTAGTATTTCCCTTTGATCCTGG 335
consensus_13644#4 CATCCTTGG----CCGGTATACCGGTATCTGGGTGTACATCGCCGGCC-CGGT--TTTCG 324
consensus_13644#5 CATCCTTGG----CCGGTATACCGGTATCTGGGTGTACATCGCCGGCC-CGGT--TTTCG 151
consensus_13644#6 CATCCTCGG----CCGGTATACCGGTATTTGGGTGTACATCGCCGGCC-CGGT--TTTTG 92
consensus_13644#2 TACACCCAGAT-ACCGGTATACCGG---CCGAGGATG-ATCGCCGGTC-CGATGGTCCTG 409
consensus_13644#0 AACGGTCTCCTTGTTGCCTTCTCCGAGCAGGGGCCTTTACGAGAGGTGGTGATGGATGTG 531
consensus_13644#1 CGCGCCGCCGA-ACAGCGCCCGCAGCGCCGCGCTCGCCGCCGCCGAGCCGGCCACCTGCG 518
consensus_13644#3 AATGTATAGCC-AAGCTCAAACAAGTTCTCCAATCCCTATGACC--CTACAATAATTCTG 392
* *
consensus_13644#4 GCGCAGTTGCTGG-CGC-------GTGGGCCTACA--ATCTTATCCGGTTCACCGACAAA 374
consensus_13644#5 GCGCAGTTGCTGG-CGC-------GTGGGCCTACA--ATCTTATCCGGTTCACCGACAAA 201
consensus_13644#6 GCGCAGTTGCTGG-CGC-------GTGGGCCTACA--ATNTTATCCGGTTCNCCGACAAA 142
consensus_13644#2 GCCGGGTTCATGGACGCTCCTGATATTGGCCTGCAG-ATTATGTCCAATTGAATATTATT 468
consensus_13644#0 AAGTGGGAAGTGGAGGAAG--GGGAGCTGCTGAAGG-ATTGCCTCAAGGTGGGAGCTAAG 588
consensus_13644#1 CCGCCGCGTACGCCGGCACC---CGCCGCCACGGGA-ACCTGCCGCAGGTGGCGAACGCG 574
consensus_13644#3 CAGAGAACAATAAAGAATTCAGTAGCATAACAACACTATAACAGACAAAGGAAAGATCAA 452
*
consensus_13644#4 CCGCTAAGAGAGATCACCATGACTGC-----ATCCTTCATTAG---AAGCACAAGGAGGA 426
consensus_13644#5 CCGCTAAGAGAGATCACCATGACTGC-----ATCCTTCATTAG---AAGCACAAGGAGGA 253
consensus_13644#6 CCGNTAAGAGAGATCNCCATGACTGC-----ATCCTTCATTAG---AAGCNCAAGGAGGA 194
consensus_13644#2 GTCATTGACTAAATTGA-AGAAATCC-----ATATATGACTAGCTAAACCATACAGAGAG 522
consensus_13644#0 GACTTGGAGGGGTTGCTTGTCATTGCCAAAGATCTCTTATTTG--GGGCCACAAGGACTT 646
consensus_13644#1 AGGGTGACCGCCGGGTTGAGGTGCGCGCCGGAGATGTGGCCGAC-GGAGTACACCATCAC 633
consensus_13644#3 GATCAGAATTTCCCATGTGGCTTGTTTTTAGAGGCGCATGTGGTAGTAGCATCCAAAATT 512
*
consensus_13644#4 ACTAG-----GTCCCAGAAT-TGA--TCAGTTTTATTGTGG--TAAAACGTTTCCTTTTT 476
consensus_13644#5 ACTAG-----GTCCCAGAAT-TGA--TCAGTTTTATTGTGG--TAAAATGTTTCCTTTTT 303
consensus_13644#6 ACTAG-----GTCCCAGAAT-TGA--TCAGTTTTATTGTGG--TAAAATGTTTCCTTTTT 244
consensus_13644#2 AATAGAGCATGTACCATGAT-AAT--ACGGAGTAACTAATG--TCATTAAATGACTTTTT 577
consensus_13644#0 CTTCGCGCCACAACGAACTT-TGAGGTTTGGTACATTGGAGACTCGCTGTGCTCCTGTTC 705
consensus_13644#1 CATCACGGCGAGCCCCCACG-TGAT-GCAGATCCCCGGGAACGTCACCGTGCCTCCCGTC 691
consensus_13644#3 TTCAGTAATAATATACTGTTGCGGCTACGGCAAAATCCCAA---AAAAGAATTATCTGTT 569
* *
consensus_13644#4 TTTTTCTGTAGCTAGTGATGTTGATGGAATGAATGGGCAGTAAAAGTAATTGACACTG-- 534
consensus_13644#5 TTTTTCTGTAGCTAGTGATGTTGATGGAATGAATGGGCAGTAAAAGTAATTGACACTG-- 361
consensus_13644#6 TTTT-CTGTAGCTAGTGATGTTGATGGAATGAATGGGCAGTAAAAGTAATTGACNCTG-- 301
consensus_13644#2 CTGCTGTGCAAGTAGAGGTCATTTACTGCTGTGCAAGTAGAGGAGAGAAAAAAATGTG-- 635
consensus_13644#0 TTTCATTTGAACTAATGAAATTAAACTTAAGT-TCAGTATTAGAAATCCAGAACTTCGGT 764
consensus_13644#1 CTCTTGTTCACC-------GCCACCGTCGCGCACC--CCGCGAAGATGAGGAAGAACG-- 740
consensus_13644#3 CTTGTTTGCGAGTCATTGTCGCCTTCATGGAGCCAAGTCTTCAACATGATTGCGTCTTGG 629
* * *
consensus_13644#4 TGATTGCATAGATTTTACATGCTTTGGT---------TGGCTTGTTGTAGCTTAAATGGT 585
consensus_13644#5 TGATTGCATAGATTTTACATGCTTTGGT---------TGGCTTGTTGTAGCTTAAATGGT 412
consensus_13644#6 TGATTGCATAGATTTTACATGCTTTGGT---------TGGCTTGTTGTAGCTTAAATGGT 352
consensus_13644#2 TTTCTTTGCAGCATTGGCATAGTTTATC---------GAGAATTATTTCACAGAAGTTTC 686
consensus_13644#0 TAACATTACATCCTGCAGACCACCTAGTAACTACCGGTGTGATATTATACCCAGCGTTTC 824
consensus_13644#1 -TCCCCAAGATCTCCGCGATCACCTTCTG--CGCGAATTGGACAGAGAACATGGGGTGGT 797
consensus_13644#3 TCATCG-GCAGCAATAGTAGCTTTCACAG---AAATTAGGATTGGGTTGGCTACTATGAC 685
* * *
consensus_13644#4 GAAGGATTGGGT-TACTTGTTGTAATTATCATTCTGAAGAAAAACATTGACACCAA-TGG 643
consensus_13644#5 GAAGGATTGGGT-TACTTGTTGTAATTATCATTCTGAAGAAAAACATTGACCCCAAATGG 471
consensus_13644#6 GAAGGATTGGGT-TACTTGTTGTAATTATCATTNTGAAGAAAAACATTGACCCCNAAAAA 411
consensus_13644#2 CTTCTTTTGAAAACGGAGGCGGTAATAAATGTCTCCAAAATATTTTTTAAAAAAATAAAT 746
consensus_13644#0 ATACCCGAGAAAATTTTTGTGTGAAGATGCATAGTTGAAATATACTCCCTCCGTCCCAAA 884
consensus_13644#1 TATTACTAGAGC--TCTTGCTTCCTCCATCTTGCTCTGAATTCTCACACCTTGCTTGATG 855
consensus_13644#3 AAGCAATTGTTGTCAATCTTGGGATCAAACGATGAACACGACATTGCTGCTAATGATAGA 745
*
consensus_13644#4 CTGTGCTAGAATTTTGATAAGATTTATTTTTATTTGAGCATTATCGATCACATCAAAAA- 702
consensus_13644#5 CTGTGCTAGAATTTTGATAAGATTTATTTTTATTTGAGCAAAAAAAAAAAAA-------- 523
consensus_13644#6 AAAAAAAAAAAAAAA--------------------------------------------- 426
consensus_13644#2 TTATATAAGTACTTATAGTATTACTACACCTACTTATAGACTTTTAACTGAAAAA----- 801
consensus_13644#0 ATACTTGTCGTTTTGAGTTTTTGTTTGTAACGTTTGACGACTAGTCGTATTCAAAAGATT 944
consensus_13644#1 ATCTCTGCTGCCTTCCTCCATAGCTCTGGTTTCTTCATG-CTGGCCATTAACTCCATGCT 914
consensus_13644#3 TGATGATGATGAATTGCTGTTTGTAAAATCAAAGTGTGTTTGATTC-------------- 791
consensus_13644#4 ------------------------------------------------------------
consensus_13644#5 ------------------------------------------------------------
consensus_13644#6 ------------------------------------------------------------
consensus_13644#2 ------------------------------------------------------------
consensus_13644#0 ATGGAATTATTATTTATTTTGTTTGTGACTTGCTTTATTATTAAAAGTACTTTAAGTATG 1004
consensus_13644#1 CTCCTCCAGCCATCTCTTCTCTCTCTCTCTAGATTCTCTCTCTGAAAT-CTCTAGCTATG 973
consensus_13644#3 ------------------------------------------------------------
consensus_13644#4 ------------------------------------------------------------
consensus_13644#5 ------------------------------------------------------------
consensus_13644#6 ------------------------------------------------------------
consensus_13644#2 ------------------------------------------------------------
consensus_13644#0 ACATTTTTTTTTAATATTTGCACTAATTTTTTAAATAAGACGAATGGTCAAACGTTGCAA 1064
consensus_13644#1 A---TCTTATCCTGTTCTTCCTCTACTGCTCTGAACTTC-TGAATAACTGAAGATAACAA 1029
consensus_13644#3 ------------------------------------------------------------
consensus_13644#4 ------------------------------------------------------------
consensus_13644#5 ------------------------------------------------------------
consensus_13644#6 ------------------------------------------------------------
consensus_13644#2 ------------------------------------------------------------
consensus_13644#0 GCAAAAAGTCAAAACAACATCTAATTTGGGACGGAGGTAGTATCTTCTAGTGGTTAATGA 1124
consensus_13644#1 G--AAGATGCAGCTTGGTCTCTACTATTTATGGCCTTCAGCTCGG--------------- 1072
consensus_13644#3 ------------------------------------------------------------
consensus_13644#4 ------------------------------------------------------------
consensus_13644#5 ------------------------------------------------------------
consensus_13644#6 ------------------------------------------------------------
consensus_13644#2 ------------------------------------------------------------
consensus_13644#0 ATCGTAGTCATTGCGAAGTGTTCATTATCGATACACATATTCTGGTGGATAATTAATGAA 1184
consensus_13644#1 ------------------------------------------------------------
consensus_13644#3 ------------------------------------------------------------
consensus_13644#4 --
consensus_13644#5 --
consensus_13644#6 --
consensus_13644#2 --
consensus_13644#0 AA 1186
consensus_13644#1 --
consensus_13644#3 --
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||