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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13647#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1910 fasta sequence
[AGGGTAACCCACAGCTTAGCTAGCAAGCAGCAGCAAGCCAACATAGTAGCTAGCACGTACAAATGATCGCCATGACTCCTCTTGGACTACTGCTAGTGCTTCTCGTCCTCTGTAGCTCCATTCTTGTTGCCCATGGAGGAGACGCTGCAGCCGGCGCCTATATGGTCATAGCAACCAGCACCATGAAACCGAAAACTTTCTGCTCCGGCCACAAGGTTGCTCCAGGGGACGTGCCGTCGCCGAACAGCACTTGGGCACCGTTGCATCACCTGTATGGGCCATGCTCGCCGGCGCCGTCGTCGGCCAACAGCACCGCCGCCGACGTCGCCGCTTCCATGGCCGACATGGTCGACGACGACCAACGCCGCGCGGACTACATCCAAAAGAGGCTCACCGGCGCCACCGACGACAAGCAGCCGATGGCCTTTTCGAGCAGAACCTCGCAATACGAGAAGAACGGCCAGTACGCCACTAATGGTGGCTTAGGCAGTGTGCCTCACCTCAAAAGTTTATCAACGACGGCGACGACGAATTCGGCGCCGGATGGCACGTCGGCGGTGACCCAGACGGTGATAATCGACTCCGGCAGCGACGTTTCATGGGTGCAATGCAAGCCATGCCCCTTGCCGATGTGCCACCGGCAACGGGACCCCCTGTTCGACCCGGCCATGTCGACCACGTACGCCGCCGTCCCCTGCACCTCCGCCGCCTGCGCGCAGCTCGGCCCCTACCGCCGCGGCTGCTCCGCCAACGCGCAGTGCCAGTTCGGCATCAACTACGGCGACGGGTCGACGGCGACCGGGACGTACAGCTTCGACGACCTCACGCTGGGCCCCTACGACGTCATCAGGGGCTTCCGCTTCGGCTGTGCGCATGCCGATAGGGGGAGTGCGTTCGACTACGACGTCGCCGGGTCACTGGCGCTCGGCGGCGGCTCGCAGTCGCTGGTGCAGCAGACGGCGACGCGGTACGGCAGGGTCTTCTCCTACTGCCTCCCGCCGACGGCGAGCTCCCTCGGCTTCCTCGTTCTCGGCGTGCCGCCGGAACGCGCCCAGCTCATCCCGAGCTTCGTCTCCACGCCACTGCTGAGCAGCAGCATGGCGCCCACGTTCTACAGGGTGCTCCTCCGCGCCATCATCGTGGCGGGGCGCCCACTCGCCGTGCCACCGGCCGTGTTTTCCGCCAGCTCGGTCATCGACTCCTCCACGATCATCTCGCGCCTGCCGCCGACGGCGTACCAGGCGCTGCGCGCGGCGTTCAGGAGCGCCATGACCATGTACCGGGCGGCGCCGCCGGTGTCCATCCTCGACACCTGCTACGACTTCACCGGCGTCCGCAGCATCACCCTGCCCAGCATCGCCCTCGTCTTCGACGGCGGCGCCACCGTCAACCTCGACGCCGCCGGGATCCTGTTAGGCAGCTGCCTCGCCTTCGCGCCCACAGCCAGCGACCGCATGCCCGGCTTCATCGGCAACGTGCAGCAGAAGACGCTGGAGGTGGTGTACGACGTTCCCGCCAAGGCCATGCGATTCAGGACCGCCG-CCTGCTAAGTGCTAATTCAAATTTGCTTGCTTG-CCAAACTAGCGTATTGTTAGCTTATTATTCGAATATAAGCTAGCTAGTTGATGAAATAATTAGTCAAAGTGATTGTTGTTTATGTTTTGATGCCATGTTTATCCTACATGGCGTACTAGTAGAGCATCTATCTCTAT-GGAAAGGGATTAAAGTAGCTAGCTTAATTGCAGCATTGTCTGCTAAAGTTTAGGCTAGCTACTAAAGCTCTTTTATTTATCTTGTCTGCAATAATTTGTTATCTTGATGTGATTTCGGTCGTGTGAGATTGTAATATCGAGTTATGCATCTCCATCTTGCATGTCAAGTGATGTACTACTTTTTCCATATCTAAAAAA]
[+] EMBL AK104685 [AGGGTAACCCACAGCTTAGCTAGCAAGCAGCAGCAAGCCAACATAGTAGCTAGCACGTACAAATGATCGCCATGACTCCTCTTGGACTACTGCTAGTGCTTCTCGTCCTCTGTAGCTCCATTCTTGTTGCCCATGGAGGAGACGCTGCAGCCGGCGCCTATATGGTCATAGCAACCAGCACCATGAAACCGAAAACTTTCTGCTCCGGCCACAAGGTTGCTCCAGGGGACGTGCCGTCGCCGAACAGCACTTGGGCACCGTTGCATCACCTGTATGGGCCATGCTCGCCGGCGCCGTCGTCGGCCAACAGCACCGCCGCCGACGTCGCCGCTTCCATGGCCGACATGGTCGACGACGACCAACGCCGCGCGGACTACATCCAAAAGAGGCTCACCGGCGCCACCGACGACAAGCAGCCGATGGCCTTTTCGAGCAGAACCTCGCAATACGAGAAGAACGGCCAGTACGCCACTAATGGTGGCTTAGGCAGTGTGCCTCACCTCAAAAGTTTATCAACGACGGCGACGACGAATTCGGCGCCGGATGGCACGTCGGCGGTGACCCAGACGGTGATAATCGACTCCGGCAGCGACGTTTCATGGGTGCAATGCAAGCCATGCCCCTTGCCGATGTGCCACCGGCAACGGGACCCCCTGTTCGACCCGGCCATGTCGACCACGTACGCCGCCGTCCCCTGCACCTCCGCCGCCTGCGCGCAGCTCGGCCCCTACCGCCGCGGCTGCTCCGCCAACGCGCAGTGCCAGTTCGGCATCAACTACGGCGACGGGTCGACGGCGACCGGGACGTACAGCTTCGACGACCTCACGCTGGGCCCCTACGACGTCATCAGGGGCTTCCGCTTCGGCTGTGCGCATGCCGATAGGGGGAGTGCGTTCGACTACGACGTCGCCGGGTCACTGGCGCTCGGCGGCGGCTCGCAGTCGCTGGTGCAGCAGACGGCGACGCGGTACGGCAGGGTCTTCTCCTACTGCCTCCCGCCGACGGCGAGCTCCCTCGGCTTCCTCGTTCTCGGCGTGCCGCCGGAACGCGCCCAGCTCATCCCGAGCTTCGTCTCCACGCCACTGCTGAGCAGCAGCATGGCGCCCACGTTCTACAGGGTGCTCCTCCGCGCCATCATCGTGGCGGGGCGCCCACTCGCCGTGCCACCGGCCGTGTTTTCCGCCAGCTCGGTCATCGACTCCTCCACGATCATCTCGCGCCTGCCGCCGACGGCGTACCAGGCGCTGCGCGCGGCGTTCAGGAGCGCCATGACCATGTACCGGGCGGCGCCGCCGGTGTCCATCCTCGACACCTGCTACGACTTCACCGGCGTCCGCAGCATCACCCTGCCCAGCATCGCCCTCGTCTTCGACGGCGGCGCCACCGTCAACCTCGACGCCGCCGGGATCCTGTTAGGCAGCTGCCTCGCCTTCGCGCCCACAGCCAGCGACCGCATGCCCGGCTTCATCGGCAACGTGCAGCAGAAGACGCTGGAGGTGGTGTACGACGTTCCCGCCAAGGCCATGCGATTCAGGACCGCCG CCTGCTAAGTGCTAATTCAAATTTGCTTGCTTG CCAAACTAGCGTATTGTTAGCTTATTATTCGAATATAAGCTAGCTAGTTGATGAAATAATTAGTCAAAGTGATTGTTGTTTATGTTTTGATGCCATGTTTATCCTACATGGCGTACTAGTAGAGCATCTATCTCTAT GGAAAGGGATTAAAGTAGCTAGCTTAATTGCAGCATTGTCTGCTAAAGTTTAGGCTAGCTACTAAAGCTCTTTTATTTATCTTGTCTGCAATAATTTGTTATCTTGATGTGATTTCGGTCGTGTGAGATTGTAATATCGGGTTATGCATCTCCAT ]
[+] EMBL AK066409 [ CCACAGCTTAGCTAGCAAGCAGCAGCAAGCCAACATAGTAGCTAGCACGTACAAATGATCGCCATGACTCCTCTTGGACTACTGCTAGTGCTTCTCGTCCTCTGTAGCTCCATTCTTGTTGCCCATGGAGGAGACGCTGCAGCCGGCGCCTATATGGTCATAGCAACCAGCACCATGAAACCGAAAACTTTCTGCTCCGGCCACAAGGTTGCTCCAGGGGACGTGCCGTCGCCGAACAGCACTTGGGCACCGTTGCATCACCTGTATGGGCCATGCTCGCCGGCGCCGTCGTCGGCCAACAGCACCGCCGCCGACGTCGCCGCTTCCATGGCCGACATGGTCGACGACGACCAACGCCGCGCGGACTACATCCAAAAGAGGCTCACCGGCGCCACCGACGACAAGCAGCCGATGGCCTTTTCGAGCAGAACCTCGCAATACGAGAAGAACGGCCAGTACGCCACTAATGGTGGCTTAGGCAGTGTGCCTCACCTCAAAAGTTTATCAACGACGGCGACGACGAATTCGGCGCCGGATGGCACGTCGGCGGTGACCCAGACGGTGATAATCGACTCCGGCAGCGACGTTTCATGGGTGCAATGCAAGCCATGCCCCTTGCCGATGTGCCACCGGCAACGGGACCCCCTGTTCGACCCGGCCATGTCGACCACGTACGCCGCCGTCCCCTGCACCTCCGCCGCCTGCGCGCAGCTCGGCCCCTACCGCCGCGGCTGCTCCGCCAACGCGCAGTGCCAGTTCGGCATCAACTACGGCGACGGGTCGACGGCGACCGGGACGTACAGCTTCGACGACCTCACGCTGGGCCCCTACGACGTCATCAGGGGCTTCCGCTTCGGCTGTGCGCATGCCGATAGGGGGAGTGCGTTCGACTACGACGTCGCCGGGTCACTGGCGCTCGGCGGCGGCTCGCAGTCGCTGGTGCAGCAGACGGCGACGCGGTACGGCAGGGTCTTCTCCTACTGCCTCCCGCCGACGGCGAGCTCCCTCGGCTTCCTCGTTCTCGGCGTGCCGCCGGAACGCGCCCAGCTCATCCCGAGCTTCGTCTCCACGCCACTGCTGAGCAGCAGCATGGCGCCCACGTTCTACAGGGTGCTCCTCCGCGCCATCATCGTGGCGGGGCGCCCACTCGCCGTGCCACCGGCCGTGTTTTCCGCCAGCTCGGTCATCGACTCCTCCACGATCATCTCGCGCCTGCCGCCGACGGCGTACCAGGCGCTGCGCGCGGCGTTCAGGAGCGCCATGACCATGTACCGGGCGGCGCCGCCGGTGTCCATCCTCGACACCTGCTACGACTTCACCGGCGTCCGCAGCATCACCCTGCCCAGCATCGCCCTCGTCTTCGACGGCGGCGCCACCGTCAACCTCGACGCCGCCGGGATCCTGTTAGGCAGCTGCCTCGCCTTCGCGCCCACAGCCAGCGACCGCATGCCCGGCTTCATCGGCAACGTGCAGCAGAAGACGCTGGAGGTGGTGTACGACGTTCCCGCCAAGGCCATGCGATTCAGGACCGCCG CCTGCTAAGTGCTAATTCAAATTTGCTTGCTTG CCAAACTAGCGTATTGTTAGCTTATTATTCGAATATAAGCTAGCTAGTTGATGAAATAATTAGTCAAAGTGATTGTTGTTTATGTTTTGATGCCATGTTTATCCTACATGGCGTACTAGTAGAGCATCTATCTCTAT GGAAAGGGATTAAAGTAGCTAGCTTAATTGCAGCATTGTCTGCTAAAGTTTAGGCTAGCTACTAAAGCTCTTTTATTTATCTTGTCTGCAATAATTTGTTATCTTGATGTGATTTCGGTCGTGTGAGATTGTAATATCGAGTTATGCATCTCCATCTTGCATGTCAAGTGATGTACT ]
[+] EMBL AU162268 [ GCTAGCAAGCAGCAGCAAGCCAACATAGTAGCTAGCACGTACAAATGATCGCCATGACTCCTCTTGGACTACTGCTAGTGCTTCTCGTCCTCTGTAGCTCCATTCTTGTTGCCCATGGAGGAGACGCTGCAGCCGGCGCCTATATGGTCATAGCAACCAGCACCATGAAACCGAAAACTTTCTGCTCCGGCCACAAGGTTGCTCCAGGGGACGTGCCGTCGCCGAACAGCACTTGGGCACCGTTGCATCACCTGTATGGGCCATGCTCGCCGGCGCCGTCGTCGGCCAACAGCACCGCCGCCGACGTCGCCGCTTCCATGGCCGACATGGTCGACGACGACCAACGCCGCGCGGACTACATCCAAAAGAGGCTCACCGGCGCCACCGACGACAAGC ]
[+] EMBL OSS10731A [ GCTAGCAAGCAGCAGCAAGCCAACATAGTAGCTAGCACGTACAAATGATCGCCATGACTCCTCTTGGNCTACTGCTAGTGCTTCTCGTCCTCTGTAGCTCCATTCTTGTTGCCCATGGAGGAGACGCTGCAGCCGGCGCCTATATGGTCATAGCAACCATCACCATNAANCCGANAACTTTCTGCTCCGGCCACAAGGTTGCTNCAGGGGACGTGCCGTCGNCGAACAGCACTTGGGCACCGTTGCA ]
[+] EMBL CB653657 [ AGCAAGCAGCAGCAAGCCAACATAGTAGCTAGCACGTACAAATGATCGCCATGACTCCTCTTGGACTACTGCTAGTGCTTCTCGTCCTCTGTAGCTCCATTCTTGTTGCCCATGGAGGAGACGCTGCAGCCGGCGCCTATATGGTCATAGCAACCAGCACCATGAAACCGAAAACTTTCTGCTCCGGCCACAAGGTTGCTCCAGGGGACGTGCCGTCGCCAAACAGCACTTGGGCACCGTTGCATCACCTGTATGGGCCATGCTCGCCGGCGCCGTCGTCGGCCAACAGCACCGCCGCCGACGTCGCCGCTTCCATGGCCGACATGGTCGACGACGACCAACGCCGCGCGGACTACATCCAAAAGAGGCTCACCGGCGCCACCGACGACAAGCAGCCGATGGCCTTTTCGAGCAGAACCTCGCAATACGAGAAGAACGGCCAGTACGCCACTAATGGTGGCTTAGGCAGTGTGCCTCACCTCAAAAGTTTATCAACGACGGCGACGACGAATTCGGCGCCGGATGGCACGTCGGCGGTGACCCAGACGGTGATAATCGACTCCGGCAGCGACGTTTCATGGGTGCAATGCAAGCCATGCCCCTTGCCGATGTGCCACCGGCAACGGGACCCCCTGTTCGACCCGGCCATGTCGACCACGTACGCCGCCGTCCCCTGCACCTCCGCCGCCTGCGCGCAGCTCGGCCCCTACCG ]
[-] EMBL CB653658 [ GGGGGAGTGCGTTCGACTACGACGTCGCCGGGTCACTGGCGCTCGGCGGCGGCTCGCAGTCGCTGGTGCAGCAGACGGCGACGCGGTACGGCAGGGTCTTCTCCTACTGCCTCCCGCCGACGGCGAGCTCCCTCGGCTTCCTCGTTCTCGGCGTGCCGCCGGAACGCGCCCAGCTCATCCCGAGCTTCGTCTCCACGCCACTGCTGAGCAGCAGCATGGCGCCCACGTTCTACAGGGTGCTCCTCCGCGCCATCATCGTGGCGGGGCGCCCACTCGCCGTGCCACCGGCCGTGTTTTCCGCCAGCTCGGTCATCGACTCCTCCACGATCATCTCGCGCCTGCCGCCGACGGCGTACCAGGCGCTGCGCGCGGCGTTCAGGAGCGCCATGACCATGTACCGGGCGGCGCCGCCGGTGTCCATCCTCGACACCTGCTACGACTTCACCGGCGTCCGCAGCATCACCCTGCCCAGCATCGCCCTCGTCTTCGACGGCGGCGCCACCGTCAACCTCGACGCCGCCGGGATCCTGTTAGGCAGCTGCCTCGCCTTCGCGCCCACAGCCAGCGACCGCATGCCCGGCTTCATCGGCAACGTGCAGCAGAAGACGCTGGAGGTGGTGTACGACGTTCCCGCCAAGGCCATGCGATTCAGGACCGCCG CCTGCTAAGTGCTAATTCAAATTTGCTTGCTTG CCAAACTAGCGTATTGTTAGCTTATTATTCGAATATAAGCTAGCTAGTGGATGAAATAATTAGTCAAAGTGATTGTTGTTT ]
[+] EMBL AU030068 [ cgCGACGCCGCCGGGATCCTGTTAGGCAGCTGCCTCGCCTTCGCGCCCACAGCCAGCGACCGCATGCCCGGCTTCATCGGCAACGTGCAGCAGAAGACGCTGGAGGTGGTGTACGACGTTCCCGCCAAGGCCATGCGATTCAGGACCGCCG CCTGCTAAGTGCTAATTCAAATTTGCTTGCTTG CCAAACTAGCGTATTGTTAGCTTATTATTCGAATATAAGCTAGCTAGTTGATGAAATAATTAGTCAAAGTGATTGTTGTTTATGTTTTGATGCCATGTTTATCCTACATGGCGTACTAGTAGAGCATCTATCTCTAT GGAAAGGGATTAAAGTAGCTAGCTTAATTGCAGCATTGTCTGCTAAAGTTTAGGCTAGCTACTAAAGCTCTTTTATTTATCTTGTCTGCAATAATTTGTTATCTTGATGTGATTTCGGTCGTGTGAGATTGTAATATCGAGTTATGCATCTCCAaaaa ]
[+] EMBL AU030067 [ GGGATCCTGTTAGGCAGCTGCCTCGCCTTCGCGCCCACAGCCAGCGACCGCATGCCCGGCTTCATCGGCAACGTGCAGCAGAAGACGCTGGAGGTGGTGTACGACGTTCCCGCCAAGGCCATGCGATTCAGGACCGCCG CCTGCTAAGTGCTAATTCAAATTTGCTTGCTTG CCAAACTAGCGTATTGTTAGCTTATTATTCGAATATAAGCTAGCTAGTTGATGAAATAATTAGTCAAAGTGATTGTTGTTTATGTTTTGATGCCATGTTTATCCTACATGGCGTACTAGTAGAGCATCTATCTCTATGGGAANGGGATTAAAGTAGCTAGCTTAATTGCAGCATTGTCTGCT AAGTTTAGGCTAGCTACTAAAGCn ]
[+] EMBL AU032552 [ GGAGGTGGTGTACGACGTTCCCGCCAAGGCCATGCGATTCAGGACCGCCGNCCTGCTAAGTGCTAATTCAAATTTGCTTGCTTGACCAAACTAGCGTATTGTTAGCTTATTATTCGAATATAAGCTAGCTAGTTGATGAAATAATTAGTCAAAGTGATTGTTGTTTATGTTTTGATGCCATGTTTATCCTACATGGCGTACTAGTAGAGCATCTATCTCTAT GGAAAGGGATTAAAGTAGCTAGCTTAATTGCAGCATTGTCTGCTAAAGTTTAGGCTAGCTACTAAAGCTCTTTTATTTATCTTGTCTGCAATAATTTGTTATCTTGATGTGATTTCGGTCGTGTGAGATTGTAATATCGAGTTATGCATCTCCATCTTGCATGTCAAGTGATGTACTACTTTTTCCATATCTAAAAAA]
consensusID : consensus_13647#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1113 fasta sequence
[CCAACGGCGCGACGGCGACCGGGACGTATAGCTCCGACGACCTCACACTGGGCCCCTACGACGTCGTCAGGGGCTTCCTCTTCGGCTGCGCGCACGCCGACCAGGGAAGCACCTTCAGCTACGACGTCGCCGGAACCCTGGCTCTCGGCGGCGGCTCACAGTCTTTCGTGCAGCAGACGGCGAGTCAGTACAGCAGGGTGTTCTCGTACTGCGTCCCGCCGTCGACGAGCTCCTTCGGGTTCATCATGTTCGGCGTGCCGCCGCAGCGCGCCGCGCTCGTCCCGACCTTCGTCTCCACGCCGTTGCTGAGCAGCAGCACCATGTCGCCGACGTTCTACAGGGTGCTCCTCCGCTCCATCATCGTGGCGGGACGCCCGCTCCCCGTGCCGCCCACTGTCTTCTCCGCCAGCTCTGTGATCGACTCCGCCACCGTCATCTCGCGGATTCCGCCGACGGCGTACCAGGCGCTGCGCGCGGCGTTTAGGAGCGCGATGACCATGTACCGGCCGGCGCCGCCGGTGTCCATCCTCGACACGTGCTACGACTTTTCTGGCGTCCGCAGCATCACCCTGCCCAGCATCGCCCTGGTGTTCGACGGCGGGGCCACCGTCAACCTCGACGCGGCGGGGATCCTGCTCCAAGGCTGCCTCGCCTTCGCGCCCACCGCCAGCGACCGCATGCCAGGGTTCATCGGTAACGTTCAGCAGCGCACGCTCGAGGTGGTGTACGACGTCCCCGGCAAGGCCATTCGATTCCGGAGCGCCGCCTGCTAAATTAATTTGCTTGCTTGCCAAACTAGCTTGGTTTATTAATTAGCTTGGTTGATGAAATAATTAGTCAATTTAATCGCTGTTTATCTTCTCATGACATGTTTATCCTACAGTACTAGTAGAGCATCTATGATCTCTATGGAAAGGGATTAAAGTAGCTGGCTTGCAGCATGCATTGTCTGCTAAAGTTTAGGCTAGCTAGCAAAGCTCTTTTGTTTATGTTGTCTGCAATAATTAGTTAATTATCTTGATGTCATTTGTGCTCGTGTGAGATTGTAATATCGAGTTATGTCCATCTTATCAAGTCATGTACTACTTTTCCCATATCTATAGCCTTTTTACA]
[+] EMBL AK061513 [CCAACGGCGCGACGGCGACCGGGACGTATAGCTCCGACGACCTCACACTGGGCCCCTACGACGTCGTCAGGGGCTTCCTCTTCGGCTGCGCGCACGCCGACCAGGGAAGCACCTTCAGCTACGACGTCGCCGGAACCCTGGCTCTCGGCGGCGGCTCACAGTCTTTCGTGCAGCAGACGGCGAGTCAGTACAGCAGGGTGTTCTCGTACTGCGTCCCGCCGTCGACGAGCTCCTTCGGGTTCATCATGTTCGGCGTGCCGCCGCAGCGCGCCGCGCTCGTCCCGACCTTCGTCTCCACGCCGTTGCTGAGCAGCAGCACCATGTCGCCGACGTTCTACAGGGTGCTCCTCCGCTCCATCATCGTGGCGGGACGCCCGCTCCCCGTGCCGCCCACTGTCTTCTCCGCCAGCTCTGTGATCGACTCCGCCACCGTCATCTCGCGGATTCCGCCGACGGCGTACCAGGCGCTGCGCGCGGCGTTTAGGAGCGCGATGACCATGTACCGGCCGGCGCCGCCGGTGTCCATCCTCGACACGTGCTACGACTTTTCTGGCGTCCGCAGCATCACCCTGCCCAGCATCGCCCTGGTGTTCGACGGCGGGGCCACCGTCAACCTCGACGCGGCGGGGATCCTGCTCCAAGGCTGCCTCGCCTTCGCGCCCACCGCCAGCGACCGCATGCCAGGGTTCATCGGTAACGTTCAGCAGCGCACGCTCGAGGTGGTGTACGACGTCCCCGGCAAGGCCATTCGATTCCGGAGCGCCGCCTGCTAAATTAATTTGCTTGCTTGCCAAACTAGCTTGGTTTATTAATTAGCTTGGTTGATGAAATAATTAGTCAATTTAATCGCTGTTTATCTTCTCATGACATGTTTATCCTACAGTACTAGTAGAGCATCTATGATCTCTATGGAAAGGGATTAAAGTAGCTGGCTTGCAGCATGCATTGTCTGCTAAAGTTTAGGCTAGCTAGCAAAGCTCTTTTGTTTATGTTGTCTGCAATAATTAGTTAATTATCTTGATGTCATTTGTGCTCGTGTGAGATTGTAATATCGAGTTATGTCCATCTTATCAAGTCATGTACTACTTTTCCCATATCTATAGCCTTTTTACA]
consensusID : consensus_13647#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence
[ACCGGCGTCCGCAGCATCACCCTTCCCAGCATCGCCCTCGTCTTCGACATGGGCGCCACCGTCAACCTCGACGCGTCCGGGATCCTCCTCGGCAGCTGCCTCGCCTTCGCGCCAACCGCCAGCGACCGCATGCCAGGGTTCATCGGCAACGTGCAGCAGCGCACGCTGGAGGTGGTGTACGACGTCCCCGGCAAGGCCATGCGATTCCGGAGCGCCGCCTGCTAATTAATTTGCTTCTAATTATCTGCCTCTATAATTGCTTGCTTGCCAATTAAACTAGCTTAGTTTATTAGCTTACTGGAATATAAGCTAGCTAGCTAGTTGATGAAATAAATTTAGTCAAATTAAGGAGTATCTACCAGTGATTAAGCTGAACCTACCCATCACTGTTTATCTTTTTGAATCTATGTTTATCCTACAGTATTAGAGCATCTCTATGAGAGGGATTAAAGTAGTTAGCTTGCATTGTCTGCTAAAGTTATGCTAGCTGGCTATCAAAGCTCTTTGTCTGTAATAATTAGTTATCTTGATGTGATATATTTGTGATCGTGTGAGATTGTAATGCAGTCATGTACTGCGTCCATCTATTGTTTGTCAAGGGACTGATTTTTCCAAACCTTACCTTTATGGCTTTAAT]
[+] EMBL CA765197 [ACCGGCGTCCGCAGCATCACCCTTCCCAGCATCGCCCTCGTCTTCGACATGGGCGCCACCGTCAACCTCGACGCGTCCGGGATCCTCCTCGGCAGCTGCCTCGCCTTCGCGCCAACCGCCAGCGACCGCATGCCAGGGTTCATCGGCAACGTGCAGCAGCGCACGCTGGAGGTGGTGTACGACGTCCCCGGCAAGGCCATGCGATTCCGGAGCGCCGCCTGCTAATTAATTTGCTTCTAATTATCTGCCTCTATAATTGCTTGCTTGCCAATTAAACTAGCTTAGTTTATTAGCTTACTGGAATATAAGCTAGCTAGCTAGTTGATGAAATAAATTTAGTCAAATTAAGGAGTATCTACCAGTGATTAAGCTGAACCTACCCATCACTGTTTATCTTTTTGAATCTATGTTTATCCTACAGTATTAGAGCATCTCTATGAGAGGGATTAAAGTAGTTAGCTTGCATTGTCTGCTAAAGTTATGCTAGCTGGCTATCAAAGCTCTTTGTCTGTAATAATTAGTTATCTTGATGTGATATATTTGTGATCGTGTGAGATTGTAATGCAGTCATGTACTGCGTCCATCTATTGTTTGTCAAGGGACTGATTTTTCCAAACCTTACCTTTATGGCTTTAAT]
consensusID : consensus_13647#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 541 fasta sequence
[CCCAGCTATCGCCCTCGTCTTGCGACGGCGGCGCCACCGTCAACCTCGACGCCGCCGGGATCCTGTTAGGCAGCTGCCTCGCCTTCGCGCCCACAGCCAGCGACCGCATGCCCGGCTTCATCGGCAACGTGCAGCCAGAAGACGCCTGGAGGTGGTGTACGACGTT-CCCGCCAAGGCCATGCGATT-CAGGACCGCCCGCCTGCTAAGTGCTAATTCAAATTTGCTTGCTTGCC-AACTAGCGTATTGTTAGCTTATTATTCGAATATAAGCTAGCTAGTTGATGAAATAATTAGTCAAAGTGATTGTTGTTTATGTTTTGATGCCATGTTTATCCTACCTGGCGTACTAGTAGAGCATCTATCTCTATGGAAAGGGATTAAAGTAGCTAGCTTAATTGCAGCCTTGTCTGCTAAAGTTTAGGCTAGCTACTAAAGCTCTTTTATTTATCTTGTCTGCAATAATTTGTTATCTTGATGTGATTTCGGTCGTGTGAGATTGTAATATCGAGTTATGC----CAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI805342 [CCCAGCTATCGCCCTCGTCTTGCGACGGCGGCGCCACCGTCAACCTCGACGCCGCCGGGATCCTGTTAGGCAGCTGCCTCGCCTTCGCGCCCACAGCCAGCGACCGCATGCCCGGCTTCATCGGCAACGTGCAGCCAGAAGACGCCTGGAGGTGGTGTACGACGTT CCCGCCAAGGCCATGCGATT CAGGACCGCCCGCCTGCTAAGTGCTAATTCAAATTTGCTTGCTTGCC AACTAGCGTATTGTTAGCTTATTATTCGAATATAAGCTAGCTAGTTGATGAAATAATTAGTCAAAGTGATTGTTGTTTATGTTTTGATGCCATGTTTATCCTACCTGGCGTACTAGTAGAGCATCTATCTCTATGGAAAGGGATTAAAGTAGCTAGCTTAATTGCAGCCTTGTCTGCTAAAGTTTAGGCTAGCTACTAAAGCTCTTTTATTTATCTTGTCTGCAATAATTTGTTATCTTGATGTGATTTCGGTCGTGTGAGATTGTAATATCGAGTTATGC CAAAAAAAAAA ]
[+] EMBL AU029542 [ GCGGCNCCACCGTCAACCTNGACGCCGCCGGGATCCTGTTNGGCAGCTGCCTCGCCTTCGCGCCCACAGCCAGCGACCGCATGCCCGGCTTCATCGGCAACGTGCNG CAGAAGACG CTGGAGGTGGTGTACGACGTTCCCCGCCAAGGCCATGCGATTGCAGGACCG CCGCCTGCTAAGTGCTAATTCAAATTTGCTTGCTTGCCAAACTAGCGTATTGTTAGCTTATTATTCGAATATAAGCTAGCTAGTTGATGAAATAATTAGTCAAAGTGATTGTTGTTTATGTTTTGATGCCATGTTTATCCTACATGGCGTACTAGTAGAGCATCTATCTCTATGGAAAGGGATTAAAGTAGCTAGCTTAATTGCAGCATTGTCTGCTAAAGTTTAGGCTAGCTACTAAAGCTCTTTTATTTATCTTGTCTGCAATAATTTGTTATCTTGATGTGATTTCGGTCGTGTGAGATTGTAATATCGAGTTATGCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13647#0 AGGGTAACCCACAGCTTAGCTAGCAAGCAGCAGCAAGCCAACATAGTAGCTAGCACGTAC 60
consensus_13647#3 ------------------------------------------------------------
consensus_13647#1 ------------------------------------------------------------
consensus_13647#2 ------------------------------------------------------------
consensus_13647#0 AAATGATCGCCATGACTCCTCTTGGACTACTGCTAGTGCTTCTCGTCCTCTGTAGCTCCA 120
consensus_13647#3 ------------------------------------------------------------
consensus_13647#1 ------------------------------------------------------------
consensus_13647#2 ------------------------------------------------------------
consensus_13647#0 TTCTTGTTGCCCATGGAGGAGACGCTGCAGCCGGCGCCTATATGGTCATAGCAACCAGCA 180
consensus_13647#3 ------------------------------------------------------------
consensus_13647#1 ------------------------------------------------------------
consensus_13647#2 ------------------------------------------------------------
consensus_13647#0 CCATGAAACCGAAAACTTTCTGCTCCGGCCACAAGGTTGCTCCAGGGGACGTGCCGTCGC 240
consensus_13647#3 ------------------------------------------------------------
consensus_13647#1 ------------------------------------------------------------
consensus_13647#2 ------------------------------------------------------------
consensus_13647#0 CGAACAGCACTTGGGCACCGTTGCATCACCTGTATGGGCCATGCTCGCCGGCGCCGTCGT 300
consensus_13647#3 ------------------------------------------------------------
consensus_13647#1 ------------------------------------------------------------
consensus_13647#2 ------------------------------------------------------------
consensus_13647#0 CGGCCAACAGCACCGCCGCCGACGTCGCCGCTTCCATGGCCGACATGGTCGACGACGACC 360
consensus_13647#3 ------------------------------------------------------------
consensus_13647#1 ------------------------------------------------------------
consensus_13647#2 ------------------------------------------------------------
consensus_13647#0 AACGCCGCGCGGACTACATCCAAAAGAGGCTCACCGGCGCCACCGACGACAAGCAGCCGA 420
consensus_13647#3 ------------------------------------------------------------
consensus_13647#1 ------------------------------------------------------------
consensus_13647#2 ------------------------------------------------------------
consensus_13647#0 TGGCCTTTTCGAGCAGAACCTCGCAATACGAGAAGAACGGCCAGTACGCCACTAATGGTG 480
consensus_13647#3 ------------------------------------------------------------
consensus_13647#1 ------------------------------------------------------------
consensus_13647#2 ------------------------------------------------------------
consensus_13647#0 GCTTAGGCAGTGTGCCTCACCTCAAAAGTTTATCAACGACGGCGACGACGAATTCGGCGC 540
consensus_13647#3 ------------------------------------------------------------
consensus_13647#1 ------------------------------------------------------------
consensus_13647#2 ------------------------------------------------------------
consensus_13647#0 CGGATGGCACGTCGGCGGTGACCCAGACGGTGATAATCGACTCCGGCAGCGACGTTTCAT 600
consensus_13647#3 ------------------------------------------------------------
consensus_13647#1 ------------------------------------------------------------
consensus_13647#2 ------------------------------------------------------------
consensus_13647#0 GGGTGCAATGCAAGCCATGCCCCTTGCCGATGTGCCACCGGCAACGGGACCCCCTGTTCG 660
consensus_13647#3 ------------------------------------------------------------
consensus_13647#1 ------------------------------------------------------------
consensus_13647#2 ------------------------------------------------------------
consensus_13647#0 ACCCGGCCATGTCGACCACGTACGCCGCCGTCCCCTGCACCTCCGCCGCCTGCGCGCAGC 720
consensus_13647#3 ------------------------------------------------------------
consensus_13647#1 ------------------------------------------------------------
consensus_13647#2 ------------------------------------------------------------
consensus_13647#0 TCGGCCCCTACCGCCGCGGCTGCTCCGCCAACGCGCAGTGCCAGTTCGGCATCAACTACG 780
consensus_13647#3 ------------------------------------------------------------
consensus_13647#1 ------------------------------------------------------------
consensus_13647#2 ------------------------------------------------------------
consensus_13647#0 GCGACGGGTCGACGGCGACCGGGACGTACAGCTTCGACGACCTCACGCTGGGCCCCTACG 840
consensus_13647#3 ------------------------------------------------------------
consensus_13647#1 CCAACGGCGCGACGGCGACCGGGACGTATAGCTCCGACGACCTCACACTGGGCCCCTACG 60
consensus_13647#2 ------------------------------------------------------------
consensus_13647#0 ACGTCATCAGGGGCTTCCGCTTCGGCTGTGCGCATGCCGATAGGGGGAGTGCGTTCGACT 900
consensus_13647#3 ------------------------------------------------------------
consensus_13647#1 ACGTCGTCAGGGGCTTCCTCTTCGGCTGCGCGCACGCCGACCAGGGAAGCACCTTCAGCT 120
consensus_13647#2 ------------------------------------------------------------
consensus_13647#0 ACGACGTCGCCGGGTCACTGGCGCTCGGCGGCGGCTCGCAGTCGCTGGTGCAGCAGACGG 960
consensus_13647#3 ------------------------------------------------------------
consensus_13647#1 ACGACGTCGCCGGAACCCTGGCTCTCGGCGGCGGCTCACAGTCTTTCGTGCAGCAGACGG 180
consensus_13647#2 ------------------------------------------------------------
consensus_13647#0 CGACGCGGTACGGCAGGGTCTTCTCCTACTGCCTCCCGCCGACGGCGAGCTCCCTCGGCT 1020
consensus_13647#3 ------------------------------------------------------------
consensus_13647#1 CGAGTCAGTACAGCAGGGTGTTCTCGTACTGCGTCCCGCCGTCGACGAGCTCCTTCGGGT 240
consensus_13647#2 ------------------------------------------------------------
consensus_13647#0 TCCTCGTTCTCGGCGTGCCGCCGGAACGCGCCCAGCTCATCCCGAGCTTCGTCTCCACGC 1080
consensus_13647#3 ------------------------------------------------------------
consensus_13647#1 TCATCATGTTCGGCGTGCCGCCGCAGCGCGCCGCGCTCGTCCCGACCTTCGTCTCCACGC 300
consensus_13647#2 ------------------------------------------------------------
consensus_13647#0 CACTGCTGAGCAGCAGCA---TGGCGCCCACGTTCTACAGGGTGCTCCTCCGCGCCATCA 1137
consensus_13647#3 ------------------------------------------------------------
consensus_13647#1 CGTTGCTGAGCAGCAGCACCATGTCGCCGACGTTCTACAGGGTGCTCCTCCGCTCCATCA 360
consensus_13647#2 ------------------------------------------------------------
consensus_13647#0 TCGTGGCGGGGCGCCCACTCGCCGTGCCACCGGCCGTGTTTTCCGCCAGCTCGGTCATCG 1197
consensus_13647#3 ------------------------------------------------------------
consensus_13647#1 TCGTGGCGGGACGCCCGCTCCCCGTGCCGCCCACTGTCTTCTCCGCCAGCTCTGTGATCG 420
consensus_13647#2 ------------------------------------------------------------
consensus_13647#0 ACTCCTCCACGATCATCTCGCGCCTGCCGCCGACGGCGTACCAGGCGCTGCGCGCGGCGT 1257
consensus_13647#3 ------------------------------------------------------------
consensus_13647#1 ACTCCGCCACCGTCATCTCGCGGATTCCGCCGACGGCGTACCAGGCGCTGCGCGCGGCGT 480
consensus_13647#2 ------------------------------------------------------------
consensus_13647#0 TCAGGAGCGCCATGACCATGTACCGGGCGGCGCCGCCGGTGTCCATCCTCGACACCTGCT 1317
consensus_13647#3 ------------------------------------------------------------
consensus_13647#1 TTAGGAGCGCGATGACCATGTACCGGCCGGCGCCGCCGGTGTCCATCCTCGACACGTGCT 540
consensus_13647#2 ------------------------------------------------------------
consensus_13647#0 ACGACTTCACCGGCGTCCGCAGCATCACCCTGCCCAGC-ATCGCCCTCGTCTT-CGACGG 1375
consensus_13647#3 --------------------------------CCCAGCTATCGCCCTCGTCTTGCGACGG 28
consensus_13647#1 ACGACTTTTCTGGCGTCCGCAGCATCACCCTGCCCAGC-ATCGCCCTGGTGTT-CGACGG 598
consensus_13647#2 --------ACCGGCGTCCGCAGCATCACCCTTCCCAGC-ATCGCCCTCGTCTT-CGACAT 50
****** ******** ** ** ****
consensus_13647#0 CGGCGCCACCGTCAACCTCGACGCCGCCGGGATCCTGTTAGGCAGCTGCCTCGCCTTCGC 1435
consensus_13647#3 CGGCGCCACCGTCAACCTCGACGCCGCCGGGATCCTGTTAGGCAGCTGCCTCGCCTTCGC 88
consensus_13647#1 CGGGGCCACCGTCAACCTCGACGCGGCGGGGATCCTGCTCCAAGGCTGCCTCGCCTTCGC 658
consensus_13647#2 GGGCGCCACCGTCAACCTCGACGCGTCCGGGATCCTCCTCGGCAGCTGCCTCGCCTTCGC 110
** ******************** * ******** * ****************
consensus_13647#0 GCCCACAGCCAGCGACCGCATGCCCGGCTTCATCGGCAACGTGCAGC-AGAAGACGC-TG 1493
consensus_13647#3 GCCCACAGCCAGCGACCGCATGCCCGGCTTCATCGGCAACGTGCAGCCAGAAGACGCCTG 148
consensus_13647#1 GCCCACCGCCAGCGACCGCATGCCAGGGTTCATCGGTAACGTTCAGC-AGCGCACGC-TC 716
consensus_13647#2 GCCAACCGCCAGCGACCGCATGCCAGGGTTCATCGGCAACGTGCAGC-AGCGCACGC-TG 168
*** ** ***************** ** ******** ***** **** ** **** *
consensus_13647#0 GAGGTGGTGTACGACGTTCCCGCCAAGGCCATGCGATTCAGGACCGCC-GCCTGCTAAGT 1552
consensus_13647#3 GAGGTGGTGTACGACGTTCCCGCCAAGGCCATGCGATTCAGGACCGCCCGCCTGCTAAGT 208
consensus_13647#1 GAGGTGGTGTACGACGTCCCCGGCAAGGCCATTCGATTCCGGAGCGCC-GCCTGCTAAAT 775
consensus_13647#2 GAGGTGGTGTACGACGTCCCCGGCAAGGCCATGCGATTCCGGAGCGCC-GCCTGCTAATT 227
***************** **** ********* ****** *** **** ********* *
consensus_13647#0 --GCTAATTCAAATT---------------TGCTTGCTTGCCAA----ACTAGCGTA--T 1589
consensus_13647#3 --GCTAATTCAAATT---------------TGCTTGCTTGCCAA-----CTAGCGTA--T 244
consensus_13647#1 --T--------AATT---------------TGCTTGCTTGCCAA----ACTAGC------ 800
consensus_13647#2 AATTTGCTTCTAATTATCTGCCTCTATAATTGCTTGCTTGCCAATTAAACTAGCTTAGTT 287
**** ************** *****
consensus_13647#0 TGTTAGCTTATTATTCGA-ATATAAGCTAGCTAGTTGATGAAATAA--TTAGTCAAAGTG 1646
consensus_13647#3 TGTTAGCTTATTATTCGA-ATATAAGCTAGCTAGTTGATGAAATAA--TTAGTCAAAGTG 301
consensus_13647#1 --TTGGTTTATTA--------ATTAGCT---TGGTTGATGAAATAA--TTAGTCAATTTA 845
consensus_13647#2 TATTAGCTTACTGGAATATAAGCTAGCTAGCTAGTTGATGAAATAAATTTAGTCAAATTA 347
** * *** * **** * ************* ******** *
consensus_13647#0 ATTGTTGTTTATG--TTTTGATGCCATGTTTATCCTACATGGCGTA-CTAGTAGAGCATC 1703
consensus_13647#3 ATTGTTGTTTATG--TTTTGATGCCATGTTTATCCTACCTGGCGTA-CTAGTAGAGCATC 358
consensus_13647#1 ATCGCTGTTTATC--TTCTCATGACATGTTTATCCTACA----GTA-CTAGTAGAGCATC 898
consensus_13647#2 AGGAGTATCTACCAGTGATTAAGCTGAACCTACCCATCACTGTTTATCTTTTTGAATCTA 407
* * * ** * * * * ** ** * ** ** * ** *
consensus_13647#0 TAT---CTCTATGG------------------AAAGGGATTAAAGTAGCTAGCTTAATTG 1742
consensus_13647#3 TAT---CTCTATGG------------------AAAGGGATTAAAGTAGCTAGCTTAATTG 397
consensus_13647#1 TATGATCTCTATGG------------------AAAGGGATTAAAGTAGCTGGCTTGCAGC 940
consensus_13647#2 TGTTTATCCTACAGTATTAGAGCATCTCTATGAGAGGGATTAAAGTAGTTAGCTT----- 462
* * *** * * ************** * ****
consensus_13647#0 CAGCATTGTCTGCTAAAGTTTAG---GCTAGCTACTAAAGCTCTTTTATTTATCTTGTCT 1799
consensus_13647#3 CAGCCTTGTCTGCTAAAGTTTAG---GCTAGCTACTAAAGCTCTTTTATTTATCTTGTCT 454
consensus_13647#1 ATGCATTGTCTGCTAAAGTTTAG---GCTAGCTAGCAAAGCTCTTTTGTTTATGTTGTCT 997
consensus_13647#2 --GCATTGTCTGCTAAAGTTATGCTAGCTGGCTATCAAAGCTCTTT----------GTCT 510
** *************** * *** **** ********** ****
consensus_13647#0 GCAATAATTTGTTA----TCTTGATGTGAT----TT-CGGTCGTGTGAGATTGTAATATC 1850
consensus_13647#3 GCAATAATTTGTTA----TCTTGATGTGAT----TT-CGGTCGTGTGAGATTGTAATATC 505
consensus_13647#1 GCAATAATTAGTTAATTATCTTGATGTCAT----TTGTGCTCGTGTGAGATTGTAATATC 1053
consensus_13647#2 GTAATAATTAGTTA----TCTTGATGTGATATATTTGTGATCGTGTGAGATTGTAATGCA 566
* ******* **** ********* ** ** * *****************
consensus_13647#0 GAGTTATGCATCTCCATCTTGCATGTCAAGTGATGTACTACTTTTTCCATATCTAAAAAA 1910
consensus_13647#3 GAGTTATGC----CAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------- 541
consensus_13647#1 GAGTTATGT----CCATCTTA----TCAAGTCATGTACTACTTTTCCCATATCTATAGCC 1105
consensus_13647#2 GTCATGTACTGCGTCCATCTAT-TGTTTGTCAAGGGACTGATTTTTCCAAACCT-TACCT 624
* * * * *
consensus_13647#0 -------------
consensus_13647#3 -------------
consensus_13647#1 TTTTTACA----- 1113
consensus_13647#2 TTATGGCTTTAAT 637
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||