cluster # 1365

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Oryza sativa
cluster # 1365 cluster # 1365 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1365#0 length = 574 sequences # 1

consensus_1365#1 length = 319 sequences # 1

consensusID : consensus_1365#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 574
fasta sequence

                              [GGTAAAGATCAGCATTTGCAGCATTCCCATCGCGCAAACAGTGACCATCTTCCAGCATCAGCAGTTTTTCCCCTGCCAGATCGGCCATCGGTACGCATTCGCGGTTCGCCCACGGGTGATCTTCATAGATAGCCAGCAACATTGGCTCATCAAACAACGGCACTTCAATGAATGCTTCGCTCTCTTTCACCAGCGCGAGGATCACGCAATCGAGTTTGCCGCTGTCCAGTTGCGCCAGTAACTGGTGGGTCTGTGCTTCATGCAGATACATTTCCAGCTTTGGAAAGGTCTGGTGCAGCATAGGGATAATATGCGGTAGCAGGTACGGTCCAACTGTGGGAATCAAACCAATGTGCAGCGGTCCGGACATCGTCTCGCCCTGCTGGCTTGCCATCTCTTTAAGGACTTTCACCTCACGCAGCACGGTACGCGCCTGATCCACCAGCAGCATTCCCGCCTGGGTGAACAACACTTTACGGCTGGTCCGCTCCAGCAACATCACGCCCAGCTCATCTTCCAGCTTACGAATTTGCCCGCTAAGCGTCGGCTGGCTAACGTGGCAGGAATCTGCCGC]

[+] EMBL CF306673             [GGTAAAGATCAGCATTTGCAGCATTCCCATCGCGCAAACAGTGACCATCTTCCAGCATCAGCAGTTTTTCCCCTGCCAGATCGGCCATCGGTACGCATTCGCGGTTCGCCCACGGGTGATCTTCATAGATAGCCAGCAACATTGGCTCATCAAACAACGGCACTTCAATGAATGCTTCGCTCTCTTTCACCAGCGCGAGGATCACGCAATCGAGTTTGCCGCTGTCCAGTTGCGCCAGTAACTGGTGGGTCTGTGCTTCATGCAGATACATTTCCAGCTTTGGAAAGGTCTGGTGCAGCATAGGGATAATATGCGGTAGCAGGTACGGTCCAACTGTGGGAATCAAACCAATGTGCAGCGGTCCGGACATCGTCTCGCCCTGCTGGCTTGCCATCTCTTTAAGGACTTTCACCTCACGCAGCACGGTACGCGCCTGATCCACCAGCAGCATTCCCGCCTGGGTGAACAACACTTTACGGCTGGTCCGCTCCAGCAACATCACGCCCAGCTCATCTTCCAGCTTACGAATTTGCCCGCTAAGCGTCGGCTGGCTAACGTGGCAGGAATCTGCCGC]




>consensus_1365#0
GGTAAAGATCAGCATTTGCAGCATTCCCATCGCGCAAACAGTGACCATCTTCCAGCATCA
GCAGTTTTTCCCCTGCCAGATCGGCCATCGGTACGCATTCGCGGTTCGCCCACGGGTGAT
CTTCATAGATAGCCAGCAACATTGGCTCATCAAACAACGGCACTTCAATGAATGCTTCGC
TCTCTTTCACCAGCGCGAGGATCACGCAATCGAGTTTGCCGCTGTCCAGTTGCGCCAGTA
ACTGGTGGGTCTGTGCTTCATGCAGATACATTTCCAGCTTTGGAAAGGTCTGGTGCAGCA
TAGGGATAATATGCGGTAGCAGGTACGGTCCAACTGTGGGAATCAAACCAATGTGCAGCG
GTCCGGACATCGTCTCGCCCTGCTGGCTTGCCATCTCTTTAAGGACTTTCACCTCACGCA
GCACGGTACGCGCCTGATCCACCAGCAGCATTCCCGCCTGGGTGAACAACACTTTACGGC
TGGTCCGCTCCAGCAACATCACGCCCAGCTCATCTTCCAGCTTACGAATTTGCCCGCTAA
GCGTCGGCTGGCTAACGTGGCAGGAATCTGCCGC

consensusID : consensus_1365#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 319
fasta sequence

                              [CGGCATATAAACAACCCCATCGCGTTTGCGCTCCGGCGGCACACCCAGCGCTGGCAGTAAAGTGATCCCGCTACCTGCCGCCACCATGTTGCGCAGAGTTTCCAGGCTGGTCGCGCGGAAGTGTGTATCTTCATCCGCCCCGGCTTCAAAACAGAAACCCATTGCCTGATCGCGCAAACAGTGACCATCTTCCAGCATCAGCAGTTTTTCCCCTGCCAGATCGGCCATCGGTACGCATTCGCGGTTCGCCCACGGGTGATCTTCATAGATAGCCAGCAACATTGGCTCATCAAACAACGGCACTTCAATGAATGCTCCG]

[+] EMBL CB640131             [CGGCATATAAACAACCCCATCGCGTTTGCGCTCCGGCGGCACACCCAGCGCTGGCAGTAAAGTGATCCCGCTACCTGCCGCCACCATGTTGCGCAGAGTTTCCAGGCTGGTCGCGCGGAAGTGTGTATCTTCATCCGCCCCGGCTTCAAAACAGAAACCCATTGCCTGATCGCGCAAACAGTGACCATCTTCCAGCATCAGCAGTTTTTCCCCTGCCAGATCGGCCATCGGTACGCATTCGCGGTTCGCCCACGGGTGATCTTCATAGATAGCCAGCAACATTGGCTCATCAAACAACGGCACTTCAATGAATGCTCCG]




>consensus_1365#1
CGGCATATAAACAACCCCATCGCGTTTGCGCTCCGGCGGCACACCCAGCGCTGGCAGTAA
AGTGATCCCGCTACCTGCCGCCACCATGTTGCGCAGAGTTTCCAGGCTGGTCGCGCGGAA
GTGTGTATCTTCATCCGCCCCGGCTTCAAAACAGAAACCCATTGCCTGATCGCGCAAACA
GTGACCATCTTCCAGCATCAGCAGTTTTTCCCCTGCCAGATCGGCCATCGGTACGCATTC
GCGGTTCGCCCACGGGTGATCTTCATAGATAGCCAGCAACATTGGCTCATCAAACAACGG
CACTTCAATGAATGCTCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1365#0      GGTAAAGATCAGCATTTGCAGCATTCCCATCGCGCAAACAGTGACCATCTTCCAGCATCA 60
consensus_1365#1      ------------------------------------------------------------
                                                                                  

consensus_1365#0      GCAGTTTTTCCCCTGCCAGATCGGCCATCGGTACGCATTCGCGGTTCGCCCACGGGTGAT 120
consensus_1365#1      ------------------------------------------------------------
                                                                                  

consensus_1365#0      CTTCATAGATAGCCAGCAACATTGGCTCATCAAACAACGGCACTTCAATGAATGCTTCGC 180
consensus_1365#1      ----------------------CGGCATAT-AAACAACCCCATCGCGTTTG-CGCTCCGG 36
                                             ***  ** *******  **   *  *    *** ** 

consensus_1365#0      TCTCTTTCACCAGCGCGAGGA-TCACGCAATCGAGTT---TGCCGCTGTCCAGTTGCGCC 236
consensus_1365#1      CGGCACAC-CCAGCGCTGGCAGTAAAGTGATCCCGCTACCTGCCGCCACCATGTTGCGCA 95
                         *   * *******  * * * * *  ***  * *   ******   *  ******* 

consensus_1365#0      AGTAACTGGTGGGTCTGTGCTTCATGCAGATACATTTCCAGCTTTGGAAAGGTCTGGTGC 296
consensus_1365#1      G--AGTTTCCAGGCTGGT----CGCGCGGAAGTGTGT--ATCTTC------ATCCGCCCC 141
                         *  *    **   **    *  ** **    * *  * ***        ** *   *

consensus_1365#0      AGCATAGGGATAATATGCGGTAGCAGGTACGGTCCAACTGTGGGAATCAAACCAATGTGC 356
consensus_1365#1      GGCTTCAAAACAGAAACCCATTGCCTGATCGCGCAAACAGTGACCATCTT-CCAGCAT-C 199
                       ** *    * *  *  *  * **  *  **  * *** ***   ***   ***   * *

consensus_1365#0      AGCGGTCCGGACATCGTCTCGCCCTGCTGGCTTGCCATCTCTTTAAGGACTTTCACCTCA 416
consensus_1365#1      AGCAGT----------TTTTCCCCTGCCAGATCGGC-CATCGGTACGCATTCGCGGTTCG 248
                      *** **          * *  ******  * * * *   **  ** * * *  *   ** 

consensus_1365#0      CGCAGCACGGTACGCGCCTGATCCACCAGCAGCATTCCCGCCTGGGTGAACAACACTTTA 476
consensus_1365#1      CCCA-CGGGTGATCTTCATAGATAGCCAGCAACATTGGCTCATCAAACAACGGCACTTCA 307
                      * ** *  *  *    * *      ****** ****  * * *     ***  ***** *

consensus_1365#0      -CGGCTGGTCCGCTCCAGCAACATCACGCCCAGCTCATCTTCCAGCTTACGAATTTGCCC 535
consensus_1365#1      ATGAATGCTCCG------------------------------------------------ 319
                        *  ** ****                                                

consensus_1365#0      GCTAAGCGTCGGCTGGCTAACGTGGCAGGAATCTGCCGC 574
consensus_1365#1      ---------------------------------------