These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13652#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1938 fasta sequence [TTTTTTTTTTTTTTTTTTTGGAGCAACAACTTCCTAACTTCAAGCTTATTTACATTACACATAGGNNAAAGAGGNTAACAGTGNGGATAGCTGTTTGCAAGAATCTCCTTGGATATAAGTACACTGTNGAAACTAGAATAGGATGAAANGGTGNAAATTTCTAACAGGNAAACGGGTTACTTTGACCTTAATANTGTAATTTCTCCCCAAAACGAATTNCAGAATACATACCTAGTCCTAGCTGAGNAATATAAAGCCGCGGCGATTTGACGCACCTCNATATGATGAATAATTTACACATGTATCAGCCTTAGATCGGTCATTCTTGATTCGCAGGTCTTTGGCCTGTATGTGCCGCTGCCAGAAGCCCCACTGGAGATTTTGACTTGACAGTAGCTCGGTAAGATACTTGCTACACAATGTGTTGCGTCTTCAGATTTCAGTAATGTATAAGCCGATAGTCACCTTGTCACAGCTGTACCATTCTATAAATATATAATCCTATTTCATACCAATCCATGAGCAGAGGAACCACTGAAAGACTCCCAAGGGAAATGCAACTAATGCGTTATCGCTCAGAAAGCTGTTAGATGATTTCTTCAAGATGACTCCAACTTGGCTACTATTCACTTGACCCACTGTTTCTTGAGGAGGAATCTCGTGAGTGACGTTTTCCTTCCATTGCTTCTTTCTTTTCCTGGCAACTGTGGCAAAGGAAAGGCCCATCCCATGGACGCAGCTTTCCTGACTTTGACAAACCCTCATGTATGGATATACCCTGACCAGACTCTAACTCTACTTGAC-AAATTGCACATATGAAGAGCTTGAACATAT-TCCGAACTGGATATTCAGAATCTAGCCGTCTTGAAAGGGAAGGACATCCATCCTCAAAGACTTCCTCCACCAAATCTGGCTGGGTACATTGGTCCTTATCTGCATGACATGGTGAGTCTGATGTTGCTTTCTTGTAAAAGATATTTTTGAAAAGTCCTTTCCCTGCCTTTTTTGCAGGTTGCACAGTGGGGCTTATTTTTTCTGGAGGTATTATGTCAATGACAATACAAGTCGTATCATCTCTCAATCCTTTTGATGCAATTGCTTCTTTGACAATTTGATCCGCTGCAGCTTCTGGAGGAAGCCCTCGTGCACAACTAAAAGCCGTATCCACAGTCAAGGCATCCCAAACACCATCACTTGAAATAATGATTCTGCCTCCAGCACTTGATAGCTTGATCTGCTTCACATAAGGCACGGGAATGATAAATTCACCTACATCCTGATCACCAATTGATCTTGATAGGCACAAGCCACCAGGCCAACATCTAAGTGGCCCAATCTCAGCTCCGCCGACAACATTTAGCCTTCCAACTTCACCTCCGCTTTAGGTTACACGTCCAACCTCCTCTTCGCTAGCATCGAAGCGATGGTCAGCGGACAAATGGTAAATGGTACCCTCAGCTTCAAGGACGCACCGCGAATCGCCAACGGATGCAACGGTCACAACGTACCCATCGATTATGACAAACGTCACGGTTGTTCCTGAAGAATGGGCTCTTGTTTGAAAATCCTTGTCCGTCTTGACGAACCCGGCCACCAGCGCCCTCGGGAGCGCTGCGAGCCACTCGTCGCCGCTCAGATCGGCAGGAACGCAGCACATGACGTTGCTGAGGATATTCTCCTTGGCGTACACCGCGGCGCCGCTCCCGTTGTGCCCATCGAACAGGGCGAAGGCGGAGAAGGGGGCGCCGCCGGCCGGGAGGCGCTNGCAGGCCGGCTTGAGCAGCGCGAAGTCCTCCCCCTTCTTAGCCCTACACGCCTGCCCCGCCGCGACGATGGGCCGCCGCTCCCGCTCCCGCCCGCCCGCACCCGCCGACGCCGACGCCGAAGCGCGCTCCGCCGACGCCTCACGCCGCAGCAGGTGCCCCGAGCGCCACGCTC] [-] EMBL AU100744 [TTTTTTTTTTTTTTTTTTTGGAGCAACAACTTCCTAACTTCAAGCTTATTTACATTACACATAGGNNAAAGAGGNTAACAGTGNGGATAGCTGTTTGCAAGAATCTCCTTGGATATAAGTACACTGTNGAAACTAGAATAGGATGAAANGGTGNAAATTTCTAACAGGNAAACGGGTTACTTTGACCTTAATANTGTAATTTCTCCCCAAAACGAATTNCAGAATACATACCTAGTCCTAGCTGAGNAATATAAAGCCGCGGCGATTTGACGCACCTCNAT ] [+] EMBL CB624340 [ tccTTTTTTTTGCAATGGAGCAACAACTTCCTAACTTCAAGCTTATTTACATTACACATAGGTTAAAGAGGATAACAGTGAGGATAGCTGTTTGCAAGAATCTCCTTGGATATAAGTACACTGTTGAAACTAGAATAGGATGAAATGGTGAAAATTTCTAACAGGAAAACGGGTTACTTTGACCTTAATAATGTAATTTCTCCCCAAAACGAATTTCAGAATACATACCTAGTCCTAGCTGAGAAATATAAAGCCGCGGCGATTTGACGCACCTCTATATGATGAATAATTTACACATGTATCAGCCTTAGATCGGTCATTCTTGATTCGCAGGTCTTTGGCCTGTATGTGCCGCTGCCAGAAGCCCCACTGGAGATTTTGACTTGACAGTAGCTCGGTAAGATACTTGCTACACAATGTGTTGCGTCTTCAGATTTCAGTAATGTATAAGCCGATAGTCACCTTGTCACAGCTGTACCATTCTATAAATATATAATCCTATTTCATACCAATCCATGAGCAGAGGAACCACTGAAAGACTCCCAAGGGAAATGCAACTAATGCGTTATCGCTCAGAAAGCTGTTAGATGATTTCTTCAAGATGACTCCAACTTGGCTACTATTCACTTGACCCACTGTTTCTTGAGGAGGAATCTCGTGAGTGACGTTTTCCTTCCATTGCTTCTTTCTTTTCCTGGCAACTGTGGCAAAGGAAAGGCCCATCCCATGGACGCAGCTTTCCTGACTTTGACAAACCCTCATGTATGGATATACCCTGACCAGACTCTAACTCTACTTGAC AAAT ] [-] EMBL CB624339 [ TTGGCTACTATTCACTTGACCCACTGTTTCTTGAGGAGGAATCTCGTGAGTGACGTTTTCCTTCCATTGCTTCTTTCTTTTCCTGGCAACTGTGGCAAAGGAAAGGCCCATCCCATGGACGCAGCTTTCCTGACTTTGACAAACCCTCATGTATGGATATACCCTGACCAGACTCTAACTCTACTTGAC AAATTGCACATATGAAGAGCTTGAACATAT TCCGAACTGGATATTCAGAATCTAGCCGTCTTGAAAGGGAAGGACATCCATCCTCAAAGACTTCCTCCACCAAATCTGGCTGGGTACATTGGTCCTTATCTGCATGACATGGTGAGTCTGATGTTGCTTTCTTGTAAAAGATATTTTTGAAAAGTCCTTTCCCTGCCTTTTTTGCAGGTTGCACAGTGGGGCTTATTTTTTCTGGAGGTATTATGTCAATGACAATACAAGTCGTATCATCTCTCAATCCTTTTGATGCAATTGCTTCTTTGACAATTTGATCCGCTGCAGCTTCTGGAGGAAGCCCTCGTGCACAACTAAAAGCCGTATCCACAGTCAAGGCATCCCAAACACCATCACTTGAAATAATGATTCTGCCTCCAGCACTTGATAGCTTGATCTGCTTCACATAAGGCACGGGAATGATAAATTCACCTACATCCTGATCACCAATTGATCTTGATAGGCACAAGCCACCAGGCCAACATCTAAGTGGCCCAATCTCAGCTCCGCCGACAACATTTAGCCTTCCAACTTCACCTCCGCTTTAGGTTAC ] [-] EMBL C26578 [ agCTCTAACCCCACTTGACAAAATTGCACATATGAAGAGCTTGACCATATCCCCGAACTGGATATNCAGAACCTAGCCGTCTTGAAAGGGAAGGACATCCATCCTCAAAGACTTCCTCCACCAAATCTGGCTGGGTACATTGGTCCTTATCTGCATGACATGGTGAGTCTGATGTTGCTTTCTTGTAAAAGATATTTTTGAAAAGTCCTTTCCCTGCCTTTTTTGCAGGTTGCACAGTGGGGCTTATTTTTTCTGGAGGTATTATGTCAATGACAATACAAGTCGTATCATCTCTCAATCCTTTTGATGCAATTGCTTCTTTGACAATTTGATCCGCTGCAGCTTCTGGAGGAAGCCCTCGTGCACAACTAAAAGCCGTATCCACAGTCAAGGCATCCCAAACACCATCACTTGAAATAATGATTCTGCCTCCAGCACTTGATAGCT ] [-] EMBL CB641854 [ TGAAAAGTCCTTTCCCTGCCTTTTTTGCAGGTTGCACAGTGGGGCTTATTTTTTCTGGAGGTATTATGTCAATGACAATACAAGTCGTATCATCTCTCAATCCTTTTGATGCAATTGCTTCTTTGACAATTTGATCCGCTGCAGCTTCTGGAGGAAGCCCTCGTGCACAACTAAAAGCCGTATCCACAGTCAAGGCATCCCAAACACCATCACTTGAAATAATGATTCTGCCTCCAGCACTTGATAGCTTGATCTGCTTCACATAAGGCACGGGAATGATAAATTCACCTACATCCTGATCACCAATTGATCTTGATAGGCACAAGCCACCAGGCCAACATCTAAGTGGCCCAATCTCAGCTCCGCCGACAACATTTAGCCTTCCAACTTCACCTCCGCATTCTGTTACACGTCCAACCTCCTCTTCGCTAGCATCGAAGCGATGGTCAGCGGACAAATGGTAAATGGTACCCTCAGCTTCAAGGACGCACCGCGAATCGCCAACGGATGCAACGGTCACAACGTACCCATCGATTATGACAAACGTCACGGTTGTTCCTGAAGAATGGGCTCTTGTTTGAAAATCCTTGTCCGTCTTGACGAACCCGGCCACCAGCGCCCTCGGGAGCGCTGCGAGCCACTCGTCGCCGCTCAGATCGGCAGGAACGCAGCACATGACGTTGCTGAGGATATTCTCCTTGGCGTACACCGCGGCGCCGCTCCCGTTGTGCCCATCGAACAGGGCGAAGGCGGAGAAGGGGGCGCCGCCGG ] [-] EMBL AU183259 [ CCACCAGCGCCCTCGGGAGCGCTGCGAGCCACTCGTCGCCGCTCAGATCGGCAGGAACGCAGCACATGACGTTGCTGAGGATATTCTCCTTGGCGTACACCGCGGCGCCGCTCCCGTTGTGCCCATCGAACAGGGCGAAGGCGGAGAAGGGGGCGCCGCCGGCCGGGAGGCGCTNGCAGGCCGGCTTGAGCAGCGCGAAGTCCTCCCCCTTCTTAGCCCTACACGCCTGCCCCGCCGCGACGATGGGCCGCCGCTCCCGCTCCCGCCCGCCCGCACCCGCCGACGCCGACGCCGAAGCGCGCTCCGCCGACGCCTCACGCCGCAGCAGGTGCCCCGAGCGCCACGCTC] consensusID : consensus_13652#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 978 fasta sequence [CCTCATGTATGGATATACCCTGACCAGACTCTAACTCTACTTGACAAATTGCACATATGAAGAGCTTGAACATATTCCGAACTGGATATTCAGAATCTAGCCTGAATTGGATGGCAGAAAAAAAAAGTCAAACGCGAGGCATTCTTATCCAAACTAGTGGATTTTCTGCACAATTTTGTGTGGAGCTAGATTTTAAATTTTGGATTGGATTTGGTATACAACTCTTAGCAATTTTTTTTCCATAAATACATTTGTATTTCATATACAATAGGCTTTAAACGTAGAATTGGATTCGGTATAGAAGTCTTGGCTTATATTTTACATAGATACAATTGTACTTTGTATATTGGTCAATCTACACTCTTATAATCTGAACCCTCCAGAGCAAACATGGTGCTTTCGTTTCGAGCTATCTTAACAGGATCAGCTATTTTAACTAGTTTCATGCTTCATGGCCTACTTACATACTAACACATAAGCAAATGACCTACTGTTAAAATGAAGTCCCCATCAGAAGAGGCTGAGTCTGTGACCAATCAAAATAGACACATACTTCTTCCACAATCAATCATGTAGATTCTAATTGCAATGCTACAAATAGAGTATAAGCTATTTCACAGATTGAAATGTGTTGAAAACTGGCAAGCTTGACAAAATGTTAGAATAGCCCCCATGTACTACCTTAAGAACAAATGTAACACCTAGAAAGTAGAGACCAGGCAATAGCAATACCTAACCTAAGCTATGACCAAAAAGGTTGGGCCCTGATGTTCCATGCTTCACCCTTCAATAGGAGTTGCAAAGAAATGAATAGGTAAGTAGTTGGAAACATGGAAAGTTTTTGCAGAATCTTCAAAGGGTGAAGCATAAAAAAATCTCTCGTAGAACTGCCTTCCAACTAAAATGGCATCTCACTCTCACAAATCTCATAAGACATCAATTCATCACACTTTTAATTGACTGTTGGCAATTACCACC] [-] EMBL OS0210A [CCTCATGTATGGATATACCCTGACCAGACTCTAACTCTACTTGACAAATTGCACATATGAAGAGCTTGAACATATTCCGAACTGGATATTCAGAATCTAGCCTGAATTGGATGGCAGAAAAAAAAAGTCAAACGCGAGGCATTCTTATCCAAACTAGTGGATTTTCTGCACAATTTTGTGTGGAGCTAGATTTTAAATTTTGGATTGGATTTGGTATACAACTCTTAGCAATTTTTTTTCCATAAATACATTTGTATTTCATATACAATAGGCTTTAAACGTAGAATTGGATTCGGTATAGAAGTCTTGGC ] [-] EMBL CB623012 [ GATTGGATTTGGTATACAACTCTTAGCAATTTTTTGTCCATAAATACATTTGTATTTCATATACAATAGGCTTTAAACGTAGAATTGGATTCGGTATAGAAGTCTTGGCTTATATTTTACATAGATACAATTGTACTTTGTATATTGGTCAATCTACACTCTTATAATCTGAACCCTCCAGAGCAAACATGGTGCTTTCGTTTCGAGCTATCTTAACAGGATCAGCTATTTTAACTAGTTTCATGCTTCATGGCCTACTTACATACTAACACATAAGCAAATGACCTACTGTTAAAATGAAGTCCCCATCAGAAGAGGCTGAGTCTGTGACCAATCAAAATAGACACATACTTCTTCCACAATCAATCATGTAGATTCTAATTGCAATGCTACAAATAGAGTATAAGCTATTTCACAGATTGAAATGTGTTGAAAACTGGCAAGCTTGACAAAATGTTAGAATAGCCCCCATGTACTACCTTAAGAACAAATGTAACACCTAGAAAGTAGAGACCAGGCAATAGCAATACCTAACCTAAGCTATGACCAAAAAGGTTGGGCCCTGATGTTCCATGCTTCACCCTTCAATAGGAGTTGCAAAGAAATGAATAGGTAAGTAGTTGGAAACATGGAAAGTTTTTGCAGAATCTTCAAAGGGTGAAGCATAAAAAAATCTCTCGTAGAACTGCCTTCCAACTAAAATGGCATCTCACTCTCACAAATCTCATAAGACATCAATTCATCACACTTTTAATTGACTGTTGGCAATTACCACC] consensusID : consensus_13652#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 775 fasta sequence [AAAAACTTATTGATTGCACTGCTTAAAGCGTACTATTGCATCCATTGTCAAGATGNATAAAGGGTACAAAGTACAANCCGTCTTGAAAGGAANGGACATCCATCCTCAAAGACTTCCTCCACCAAATCTGGCTGGGTACATTGGTCCTTATCTGCATGACATGGTGAGTCTGATGTTGCTTTCTTGTAAAAGATATTTTTGAAAAGTCCTTTCCCTGCCTTTTTTGCAGGTTGCACAGTGGGGCTTATTTTTTCTGGAGGTATTATGTCAATGACAATACAAGTCCTATCATCTCTCAATCCTTTTGATGCAATTGCTTCTTTGACAATTTGATCCGCTGCAGCTTCTGGAGGAAGCCCTCGTGCACAACTAAAAGCCGTATCCACAGTCAAGGCATCCCAAACACCATCACTTGAAATAATGATTCTGCCTCCAGCACTTGATAGCTTGATCTGCTTCACATAAGGCACGGGAATGATAAATTCACCTACATCCTGATCACCAATTGATCTTGATAGGCACAAGCCACCAGGCCAACATCTAAGTGGCCCAATCTCAGCTCCGCCGACAACATTTAGCCTTCCAACTTCACCTCCGCGTTCTGTTACACGTCCAACCTCCTCTTCGCTAGCATCGAAGCGATGGTCAGCGGACAAATGGTAAATGGTACCCTCAGCTTCAAGGACGCACCGCGAATCGCCAACGGATGCAACGGTCGCAACGTACCCATCGATTATGACAAACGTCACGGTTGTTCCTGAAGAATGGGCTCTTG] [-] EMBL CA765984 [AAAAACTTATTGATTGCACTGCTTAAAGCGTACTATTGCATCCATTGTCAAGATGNATAAAGGGTACAAAGTACAANCCGTCTTGAAAGGAANGGACATCCATCCTCAAAGACTTCCTCCACCAAATCTGGCTGGGTACATTGGTCCTTATCTGCATGACATGGTGAGTCTGATGTTGCTTTCTTGTAAAAGATATTTTTGAAAAGTCCTTTCCCTGCCTTTTTTGCAGGTTGCACAGTGGGGCTTATTTTTTCTGGAGGTATTATGTCAATGACAATACAAGTCCTATCATCTCTCAATCCTTTTGATGCAATTGCTTCTTTGACAATTTGATCCGCTGCAGCTTCTGGAGGAAGCCCTCGTGCACAACTAAAAGCCGTATCCACAGTCAAGGCATCCCAAACACCATCACTTGAAATAATGATTCTGCCTCCAGCACTTGATAGCTTGATCTGCTTCACATAAGGCACGGGAATGATAAATTCACCTACATCCTGATCACCAATTGATCTTGATAGGCACAAGCCACCAGGCCAACATCTAAGTGGCCCAATCTCAGCTCCGCCGACAACATTTAGCCTTCCAACTTCACCTCCGCGTTCTGTTACACGTCCAACCTCCTCTTCGCTAGCATCGAAGCGATGGTCAGCGGACAAATGGTAAATGGTACCCTCAGCTTCAAGGACGCACCGCGAATCGCCAACGGATGCAACGGTCGCAACGTACCCATCGATTATGACAAACGTCACGGTTGTTCCTGAAGAATGGGCTCTTG] consensusID : consensus_13652#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 703 fasta sequence [TTTTTTTTTTTTT--TAACTTCAAGCTTATTTACCCTTCACATAGGTTAAAAAGGATAACAGGGAGGATAGCTGTTTGCAAAAATCCCCTTGGATATAAGTACCCTGTTGAAACTAAAATAGGATGAAATGGGGAAAATTTCTAACAGGAAAACGGGTTACTTTGACCTTAATAATGTAATTTCCCCCCAAAACGAATTTCAAAATACATACCTAGCCCTACCTGAAAAATATAAAGCCGCGGCGATTTGACCCCCCTCTATATGATGAATAATTTACACTTGTATCAGCCTTAAATCGGTCATTCTTGATTCCCAGGTCTTTGGCCTGTATGTGCCCCTGCCAAAACCCCCACTGGAAATTTTGACTTGACAGTACCTCGGTAAAATACTTGCTACACAATGGGTTGCGTCTTCAAATTTCAGTAATGTATAAGCCGATAGTCCCCTTGTCACAGCTGTACCATTCTATAAATATATAATCCTATTTCATACCAATCCATGAGCAAAGGAACCACTGAAAAACTCCCAAGGGAAATGCAACTAATGCGTTATCCCTCAAAAAGCTGTTAAATGATTTCTTCAAAATGACTCCAACTTGGCTACTATTCACTTGACCCACTGTTTCTTGAGGAGGAATCTCGGGAGGGACGTTTTCCTTCCATTGCTTCTTTCTTTTCCTGGCAACTGTGGCAAAGGAAAGGCCC] [+] EMBL CB623013 [TTTTTTTTTTTTT TAACTTCAAGCTTATTTACCCTTCACATAGGTTAAAAAGGATAACAGGGAGGATAGCTGTTTGCAAAAATCCCCTTGGATATAAGTACCCTGTTGAAACTAAAATAGGATGAAATGGGGAAAATTTCTAACAGGAAAACGGGTTACTTTGACCTTAATAATGTAATTTCCCCCCAAAACGAATTTCAAAATACATACCTAGCCCTACCTGAAAAATATAAAGCCGCGGCGATTTGACCCCCCTCTATATGATGAATAATTTACACTTGTATCAGCCTTAAATCGGTCATTCTTGATTCCCAGGTCTTTGGCCTGTATGTGCCCCTGCCAAAACCCCCACTGGAAATTTTGACTTGACAGTACCTCGGTAAAATACTTGCTACACAATGGGTTGCGTCTTCAAATTTCAGTAATGTATAAGCCGATAGTCCCCTTGTCACAGCTGTACCATTCTATAAATATATAATCCTATTTCATACCAATCCATGAGCAAAGGAACCACTGAAAAACTCCCAAGGGAAATGCAACTAATGCGTTATCCCTCAAAAAGCTGTTAAATGATTTCTTCAAAATGACTCCAACTTGGCTACTATTCACTTGACCCACTGTTTCTTGAGGAGGAATCTCGGGAGGGACGTTTTCCTTCCATTGCTTCTTTCTTTTCCTGGCAACTGTGGCAAAGGAAAGGCCC] [+] EMBL CA760626 [TTTTTTTTTTTTTCCTAACTTCAAGCTTATTTACATTACACATAGGTTAAAGAGGATAACAGTGAGGATAGCTGTTTGCAAGAATCTCCTTGGATATAAGTACACTGTTGAAACTAGAATAGGATGAAATGGTGAAAATTTCTAACAGGAAAACGGGTTACTTTGACCTTAATAATGTAATTTCTCCCCAAAACGAATTTCAAAATACATACCTAGTCCTAGCTGAAAAATATAAAGCCGCGGCGATTTGACGCACCTCTATATGATGAATAATTTACACATGTATCAGCCTTAGATCGGTCATTCTTGATTCGCAGGTCTTTGGCCTGTATGTGCCGCTGCCAAAAGCCCCACTGGAGATTTTGACTTGACAGTAGCTCGGTAAGATACTTGCTACACAATGTGTTGCGTCTTCAGATTTCAGTAATGTATAAGCCGATAGTCACCTTGTCACAGCTGTACCATTCTATAAATATATAATCCTATTTCATACCAATCCATGAGCAGAGGAACCACTGAAAGACTCCCAAGGGAAATGCAACTAATGCGTTATCGCTCAGAAAGCTGTTAGATGATTTCTTCAAGATGACTCCAACTTGGCTACTATTCACTTGACCCACTGTTTCTTGAGGAGGAATCTCGTGAGTGACGTTCTCCTTCCATTGCTTCT ] consensusID : consensus_13652#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [AAAGGGTACAAAGTACAAACCGTCTTGAAAGGGAAGGACATCCATCCTCAAAGACTTCCTCCACCAAATCTGGCTGGGTACATTGGTCCTTATCTGCATGACATGGTGAGTCTGATGTTGCTTTCTTGTAAAAGATATTTTTGAAAAGTCCTTTCCCTGCCTTTTTTGCAGGTTGCACAGTGGGGCTTATTTTTTCTGGAGGTATTATGTCAATGACAATACAAGTCGTATCATCTCTCAATCCTTTTGATGCAATTGCTTCTTTGACAATTTGATCCGCTGCAGCTTCTGGAGGAAGCCCTCGTGCACAACTAAAAGCCGTATCCACAGTCAAGGCATCCCAAACACCATCACTTGAAATAATGATTCTGCCTCCAGCACTTGATAGCTTGATCTGCTTCACATAAGGCACGGGAATGATAAATTCACCTACATCCTGATCACCAATTGATCTTGATAGGCACAAGCCACCAGGCCAACATCTAAGTGGCCCAATCTCAGCTCCGCCGACAACATTTAGCCTTCCAACTTCACCTCCGCATTCTGTTACACGTCCAACCCTACCAACCATAACCAGTAAGCGGTAGGAACCAACCACATATATGACAAAGAACAACAAAACATCGTGTGAGTAAACAATCTTACTCCTCTTCGCTAGCATCGAAGCGATGGTCAGCGGACAAA] [-] EMBL BF430813 [AAAGGGTACAAAGTACAAACCGTCTTGAAAGGGAAGGACATCCATCCTCAAAGACTTCCTCCACCAAATCTGGCTGGGTACATTGGTCCTTATCTGCATGACATGGTGAGTCTGATGTTGCTTTCTTGTAAAAGATATTTTTGAAAAGTCCTTTCCCTGCCTTTTTTGCAGGTTGCACAGTGGGGCTTATTTTTTCTGGAGGTATTATGTCAATGACAATACAAGTCGTATCATCTCTCAATCCTTTTGATGCAATTGCTTCTTTGACAATTTGATCCGCTGCAGCTTCTGGAGGAAGCCCTCGTGCACAACTAAAAGCCGTATCCACAGTCAAGGCATCCCAAACACCATCACTTGAAATAATGATTCTGCCTCCAGCACTTGATAGCTTGATCTGCTTCACATAAGGCACGGGAATGATAAATTCACCTACATCCTGATCACCAATTGATCTTGATAGGCACAAGCCACCAGGCCAACATCTAAGTGGCCCAATCTCAGCTCCGCCGACAACATTTAGCCTTCCAACTTCACCTCCGCATTCTGTTACACGTCCAACCCTACCAACCATAACCAGTAAGCGGTAGGAACCAACCACATATATGACAAAGAACAACAAAACATCGTGTGAGTAAACAATCTTACTCCTCTTCGCTAGCATCGAAGCGATGGTCAGCGGACAAA] consensusID : consensus_13652#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 188 fasta sequence [TTTAATTGAGAAGTGAAATCAGCATCAGGTGCAATGTGCAATGGAGCAACAACTTCCTAACTTCAAGCTTATTTACATTACACATAGGTTAAAGAGGATAACAGTGAGGATAGCTGTTTGCAAGAATCTCCTTGGATATAAGTACACTGTTGAAACTAGAATAGGATGAAATGGTGAAAATTTCTAAC] [+] EMBL CF324972 [TTTAATTGAGAAGTGAAATCAGCATCAGGTGCAATGTGCAATGGAGCAACAACTTCCTAACTTCAAGCTTATTTACATTACACATAGGTTAAAGAGGATAACAGTGAGGATAGCTGTTTGCAAGAATCTCCTTGGATATAAGTACACTGTTGAAACTAGAATAGGATGAAATGGTGAAAATTTCTAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13652#2 ------------------------------------------------------------ consensus_13652#4 ------------------------------------------------------------ consensus_13652#0 TTTTTTTTTTTTTTTTTTTGGAGCAACAACTTCCTAACTTCAAGCTTATTTACATTACAC 60 consensus_13652#3 ------------------------------------------------------------ consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 ------------------------------------------------------------ consensus_13652#2 ------------------------------------------------------------ consensus_13652#4 ------------------------------------------------------------ consensus_13652#0 ATAGGNNAAAGAGGNTAACAGTGNGGATAGCTGTTTGCAAGAATCTCCTTGGATATAAGT 120 consensus_13652#3 ------------------------------------------------------------ consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 ------------------------------------------------------------ consensus_13652#2 ------------------------------------------------------------ consensus_13652#4 ------------------------------------------------------------ consensus_13652#0 ACACTGTNGAAACTAGAATAGGATGAAANGGTGNAAATTTCTAACAGGNAAACGGGTTAC 180 consensus_13652#3 ------------------------------------------------------------ consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 ------------------------------------------------------------ consensus_13652#2 ------------------------------------------------------------ consensus_13652#4 ------------------------------------------------------------ consensus_13652#0 TTTGACCTTAATANTGTAATTTCTCCCCAAAACGAATTNCAGAATACATACCTAGTCCTA 240 consensus_13652#3 ------------------------------------------------------------ consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 ------------------------------------------------------------ consensus_13652#2 ------------------------------------------------------------ consensus_13652#4 ------------------------------------------------------------ consensus_13652#0 GCTGAGNAATATAAAGCCGCGGCGATTTGACGCACCTCNATATGATGAATAATTTACACA 300 consensus_13652#3 ------------------------------------------------------------ consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 ------------------------------------------------------------ consensus_13652#2 ------------------------------------------------------------ consensus_13652#4 ------------------------------------------------------------ consensus_13652#0 TGTATCAGCCTTAGATCGGTCATTCTTGATTCGCAGGTCTTTGGCCTGTATGTGCCGCTG 360 consensus_13652#3 ------------------------------------------------------------ consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 ------------------------------------------------------------ consensus_13652#2 ------------------------------------------------------------ consensus_13652#4 ------------------------------------------------------------ consensus_13652#0 CCAGAAGCCCCACTGGAGATTTTGACTTGACAGTAGCTCGGTAAGATACTTGCTACACAA 420 consensus_13652#3 ------------------------------------------------------------ consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 ------------------------------------------------------------ consensus_13652#2 ------------------------------------------------------------ consensus_13652#4 ------------------------------------------------------------ consensus_13652#0 TGTGTTGCGTCTTCAGATTTCAGTAATGTATAAGCCGATAGTCACCTTGTCACAGCTGTA 480 consensus_13652#3 ------------------------------------------------------------ consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 ------------------------------------------------------------ consensus_13652#2 ------------------------------------------------------------ consensus_13652#4 ------------------------------------------------------------ consensus_13652#0 CCATTCTATAAATATATAATCCTATTTCATACCAATCCATGAGCAGAGGAACCACTGAAA 540 consensus_13652#3 ------------------------------------------------------------ consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 ------------------------------------------------------------ consensus_13652#2 ------------------------------------------------------------ consensus_13652#4 ------------------------------------------------------------ consensus_13652#0 GACTCCCAAGGGAAATGCAACTAATGCGTTATCGCTCAGAAAGCTGTTAGATGATTTCTT 600 consensus_13652#3 ------------------------------------------------------------ consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 ------------------------------------------------------------ consensus_13652#2 ------------------------------------------------------------ consensus_13652#4 ------------------------------------------------------------ consensus_13652#0 CAAGATGACTCCAACTTGGCTACTATTCACTTGACCCACTGTTTCTTGAGGAGGAATCTC 660 consensus_13652#3 ------------------------------------------------------------ consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 ------------------------CCTCATGTATGGATATACCCTGACCAGACTCTAACT 36 consensus_13652#2 ------------------------------------------------------------ consensus_13652#4 ------------------------------------------------------------ consensus_13652#0 GTGAGTGACGTTTTCCTTCCATTGCTTCTTTCTTTTCCTGGCAACTGTGGCAAAGGAAAG 720 consensus_13652#3 ------------------------------------------------------------ consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 CTACTTGACAAATTGCACATATGAAGAGCTTGAACATATTCCGAACTGGATATTCAGAAT 96 consensus_13652#2 ------------------------------------------------------------ consensus_13652#4 ------------------------------------------------------------ consensus_13652#0 GCCCATCCCATGGACGCAGCTTTCCTGACTTTGACAAACCCTCATGTATGGATATACCCT 780 consensus_13652#3 ------------------------------------------------------------ consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 CTAGCCTGAATTGGATGGCAGAAAAAAAAAGTCAAACGCGAGGCATTCTTATCCAAACTA 156 consensus_13652#2 AAAAACTTATTGATTGCACTGCTTAAAGCGTACTATTGCATCCATTGTCAAGATGNATAA 60 consensus_13652#4 ----------------------------------------------------------AA 2 consensus_13652#0 GACCAGACTCTAACTCTACTTGACAAATTGCACATATGAAGAGCTTGAACATATTCCGAA 840 consensus_13652#3 ------------------------------------------------------------ consensus_13652#5 -----------------------------TTTAATTGAGAAGTGAAATCAGCATCAGGTG 31 consensus_13652#1 GTGGATTTTCTGCACAATTTTGTGTGGAGCTAGATTTTAAATTTTGGATTGGATTTGGTA 216 consensus_13652#2 A-GGGTACAAAGTA-CAANCCGTCTTGAAAGGAANGGACATCCATCCT-CAA-AGACTTC 116 consensus_13652#4 A-GGGTACAAAGTA-CAAACCGTCTTGAAAGGGAAGGACATCCATCCT-CAA-AGACTTC 58 consensus_13652#0 CTGGATATTCAGAATCTAGCCGTCTTGAAAGGGAAGGACATCCATCCT-CAA-AGACTTC 898 consensus_13652#3 -------------TTTTTTTTTTTTTTAACTTCAAGCTTATTTACCCTTCAC-ATAGGTT 46 consensus_13652#5 CAATGTGCAATGGAGCAACAACTTCCTAACTTCAAGCTTATTTACATTACAC-ATAGGTT 90 consensus_13652#1 TACAACTCTTAGCAATTTTTTTTCCATAAATACATTTGTATTTCATATACAATAGGCTTT 276 * ** * ** * ** * * consensus_13652#2 CTCCACCAAATCTGGCTGGGTA------CATTGGTCCTTATCT-GCATG-ACATGGTGAG 168 consensus_13652#4 CTCCACCAAATCTGGCTGGGTA------CATTGGTCCTTATCT-GCATG-ACATGGTGAG 110 consensus_13652#0 CTCCACCAAATCTGGCTGGGTA------CATTGGTCCTTATCT-GCATG-ACATGGTGAG 950 consensus_13652#3 AAAAAGGATAACAGGGAGGATAGC----TGTTTGCAAAAATCC-CCTTGGATATAAGTAC 101 consensus_13652#5 AAAGAGGATAACAGTGAGGATAGC----TGTTTGCAAGAATCT-CCTTGGATATAAGTAC 145 consensus_13652#1 AAACGTAGAATTGGATTCGGTATAGAAGTCTTGGCTTATATTTTACATAGATACAATTGT 336 * * * ** ** * ** * * * * consensus_13652#2 TCTGATGTTGCTTTCTTGTAAAAGATATTTTTGAAAAGTCCTTTCCCTGCCTTTTTTGCA 228 consensus_13652#4 TCTGATGTTGCTTTCTTGTAAAAGATATTTTTGAAAAGTCCTTTCCCTGCCTTTTTTGCA 170 consensus_13652#0 TCTGATGTTGCTTTCTTGTAAAAGATATTTTTGAAAAGTCCTTTCCCTGCCTTTTTTGCA 1010 consensus_13652#3 CCTGTTGAAACTAAA--ATAGGATGAAATGGGGAAAATTTCTAACAGGAAAACGGGTTAC 159 consensus_13652#5 ACTGTTGAAACTAGA--ATAGGATGAAATGGTGAAAATTTCTAAC--------------- 188 consensus_13652#1 ACTTTGTATATTGGT---CAATCTACACTCTTATAATCTGAACCCTCCAGAGCAAACATG 393 ** * * * * ** * * consensus_13652#2 GGTTGCACAGTGGGGCTTATTTTTTCTGGAGGTATTATGTCAATGA-CAATACAAGTCCT 287 consensus_13652#4 GGTTGCACAGTGGGGCTTATTTTTTCTGGAGGTATTATGTCAATGA-CAATACAAGTCGT 229 consensus_13652#0 GGTTGCACAGTGGGGCTTATTTTTTCTGGAGGTATTATGTCAATGA-CAATACAAGTCGT 1069 consensus_13652#3 TTTGACCTTAATAATGTAATTTCCCCCCAAAACGAATTTCAAAATA-CATACCTAGCCCT 218 consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 GTGCTTTCGTTTCGAGCTATCTTAACAGGATCAGCTATTTTAACTAGTTTCATGCTTCAT 453 consensus_13652#2 ATCATCTCTCAATCCTTTTG---ATGCAATTGCTTCTTTGACAATTTGATCCGCTGCAGC 344 consensus_13652#4 ATCATCTCTCAATCCTTTTG---ATGCAATTGCTTCTTTGACAATTTGATCCGCTGCAGC 286 consensus_13652#0 ATCATCTCTCAATCCTTTTG---ATGCAATTGCTTCTTTGACAATTTGATCCGCTGCAGC 1126 consensus_13652#3 ACCTGAAAAATATAAAGCCG---CGGCGATTTGACCCCCCTCTATATGATGAATAATTTA 275 consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 GGCCTACTTACATACTAACACATAAGCAAATGACCTACTGTTAAAATGAAGTCCCCATCA 513 consensus_13652#2 TTCTGGAGGAAGCCCT----CGTGCACAACTAAAAGCCGTATCCACAGTCAAGGCATCCC 400 consensus_13652#4 TTCTGGAGGAAGCCCT----CGTGCACAACTAAAAGCCGTATCCACAGTCAAGGCATCCC 342 consensus_13652#0 TTCTGGAGGAAGCCCT----CGTGCACAACTAAAAGCCGTATCCACAGTCAAGGCATCCC 1182 consensus_13652#3 CACTTGTATCAGCCTTAAATCGGTCATTCTTGATTCCCAGGTCTTTGGCCTGTATGTGCC 335 consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 GAAGAGGCTGAGTCTGTGACCAATCAAAATAGACACATACTTCTTCCA-CAATCAATCAT 572 consensus_13652#2 AAACACCATCACTTGAA--ATAATGATTCTGCCTCCAGCACTTGATAGCTTGATCTGCTT 458 consensus_13652#4 AAACACCATCACTTGAA--ATAATGATTCTGCCTCCAGCACTTGATAGCTTGATCTGCTT 400 consensus_13652#0 AAACACCATCACTTGAA--ATAATGATTCTGCCTCCAGCACTTGATAGCTTGATCTGCTT 1240 consensus_13652#3 CC-TGCCAAAACCCCCA--CTGGAAATTTTGACTTGACAGTACCTCGGTAAAATACTTGC 392 consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 GTAGATTCTAATTGCAATGCTACAAATAGAGTATAAGCTATTTCACAGATTGAAATGTGT 632 consensus_13652#2 CACATAAGGCACGGGAATGATAAATTCACCTACATCCTGATCACCAATTGATCTTGATAG 518 consensus_13652#4 CACATAAGGCACGGGAATGATAAATTCACCTACATCCTGATCACCAATTGATCTTGATAG 460 consensus_13652#0 CACATAAGGCACGGGAATGATAAATTCACCTACATCCTGATCACCAATTGATCTTGATAG 1300 consensus_13652#3 TACACAATGGGTTGCGTCTTCAAATTTCAGTAATGTATAAGCCGATAGTCCCCTTGTCAC 452 consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 TGAAAACTGGCAAGCTTGACAAAATGTTAGAATAGCCC--CCATGTACTACCTTAAGAAC 690 consensus_13652#2 GCACAAGCCACCAGGCCAACATCTAAGTGGCCCAATCTCAGCTCCGCCGACAACATTTAG 578 consensus_13652#4 GCACAAGCCACCAGGCCAACATCTAAGTGGCCCAATCTCAGCTCCGCCGACAACATTTAG 520 consensus_13652#0 GCACAAGCCACCAGGCCAACATCTAAGTGGCCCAATCTCAGCTCCGCCGACAACATTTAG 1360 consensus_13652#3 AGCTGTACCATTCTATAAATATATAATCCTATTTCATACCAATCCATGAGCAAAGGAACC 512 consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 AAATGTAACACCTAG--AAAGTAGAGACCAGGCAATAGCAATACCTAACCTAAGCTATGA 748 consensus_13652#2 CCTTCCAACTTCACCTCCGCGTTCTGTTACACGTCCAACCTCCTCTTCGCTAGCATCGAA 638 consensus_13652#4 CCTTCCAACTTCACCTCCGCATTCTGTTACACGTCCAACCCTACC--------------A 566 consensus_13652#0 CCTTCCAACTTCACCTCCGCTTTAGGTTACACGTCCAACCTCCTCTTCGCTAGCATCGAA 1420 consensus_13652#3 ACTGAAAAACTCCCAAGGGAAATGCAACTAATGCGTTATCCCTCA---AAAAGCTGTTAA 569 consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 CCAAAAAGGTTGGGCCCTGA----TGTTCCATGCTTCACCCTTCAAT-AGGAGTTGCAAA 803 consensus_13652#2 GCGATGGTCAGCGGACAAATGG------TAAATGGTACCCTCAGCTTCAAGGACGCACCG 692 consensus_13652#4 ACCATAACCAGT----AAGCGG------TAGGAACCAACCACATATATGACAAAGAACAA 616 consensus_13652#0 GCGATGGTCAGCGGACAAATGG------TAAATGGTACCCTCAGCTTCAAGGACGCACCG 1474 consensus_13652#3 ATGATTTCTTCAAAATGACTCC------AACTTGGCTACTATTCACTTGACCCACTGTTT 623 consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 GAAATGAATAGGTAAGTAGTTGGAAACATGGAAAGTTTTTGCAGAATCTTCAAAGGGTGA 863 consensus_13652#2 CGAATCGCCAACGGATGCAACGGTCGCAACGTACCCATCGATTATGACAAACGTCACGGT 752 consensus_13652#4 CAAAACATCGTGTGAGTAAACAATCTTAC--TCCTCTTCGCTAGCATCGAA----GCGAT 670 consensus_13652#0 CGAATCGCCAACGGATGCAACGGTCACAACGTACCCATCGATTATGACAAACGTCACGGT 1534 consensus_13652#3 CTTGAGGAGGAATCTCGGGAGGGACGTTTTCCTTCCATTGCTTCTTTCTTTTCCTGGCAA 683 consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 AGCATAAAAAAATCTCTCGTAGAACTGCCTTCCAACTAAAATGGCATCTCACTCTCACAA 923 consensus_13652#2 TGTTCCTGAAGAATGGGCTCTTG------------------------------------- 775 consensus_13652#4 GGTCAGCGGACAAA---------------------------------------------- 684 consensus_13652#0 TGTTCCTGAAGAATGGGCTCTTGTTTGAAAATCCTTGTCCGTCTTGACGAACCCGGCCAC 1594 consensus_13652#3 CTGTGGCAAAGGAAAGGCCC---------------------------------------- 703 consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 ATCTCATAAGACATCAATTCATCACACTTTTAATTGACTGTTGGCAATTACCACC----- 978 consensus_13652#2 ------------------------------------------------------------ consensus_13652#4 ------------------------------------------------------------ consensus_13652#0 CAGCGCCCTCGGGAGCGCTGCGAGCCACTCGTCGCCGCTCAGATCGGCAGGAACGCAGCA 1654 consensus_13652#3 ------------------------------------------------------------ consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 ------------------------------------------------------------ consensus_13652#2 ------------------------------------------------------------ consensus_13652#4 ------------------------------------------------------------ consensus_13652#0 CATGACGTTGCTGAGGATATTCTCCTTGGCGTACACCGCGGCGCCGCTCCCGTTGTGCCC 1714 consensus_13652#3 ------------------------------------------------------------ consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 ------------------------------------------------------------ consensus_13652#2 ------------------------------------------------------------ consensus_13652#4 ------------------------------------------------------------ consensus_13652#0 ATCGAACAGGGCGAAGGCGGAGAAGGGGGCGCCGCCGGCCGGGAGGCGCTNGCAGGCCGG 1774 consensus_13652#3 ------------------------------------------------------------ consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 ------------------------------------------------------------ consensus_13652#2 ------------------------------------------------------------ consensus_13652#4 ------------------------------------------------------------ consensus_13652#0 CTTGAGCAGCGCGAAGTCCTCCCCCTTCTTAGCCCTACACGCCTGCCCCGCCGCGACGAT 1834 consensus_13652#3 ------------------------------------------------------------ consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 ------------------------------------------------------------ consensus_13652#2 ------------------------------------------------------------ consensus_13652#4 ------------------------------------------------------------ consensus_13652#0 GGGCCGCCGCTCCCGCTCCCGCCCGCCCGCACCCGCCGACGCCGACGCCGAAGCGCGCTC 1894 consensus_13652#3 ------------------------------------------------------------ consensus_13652#5 ------------------------------------------------------------ consensus_13652#1 ------------------------------------------------------------ consensus_13652#2 -------------------------------------------- consensus_13652#4 -------------------------------------------- consensus_13652#0 CGCCGACGCCTCACGCCGCAGCAGGTGCCCCGAGCGCCACGCTC 1938 consensus_13652#3 -------------------------------------------- consensus_13652#5 -------------------------------------------- consensus_13652#1 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Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||