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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13669#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1993 fasta sequence
[TCTTCGTCTTCTTCTCTTCCCTCCTCTCGCCCACCCCCCCTCGCAGATCTCGCCGCGCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGTCTCCGCGAAGTCGTTCCCGCCGCCGCCGCCGCGGGCACCGCCCACGCGCTCCGTTCCGGCAGGCGGCGCGCGCTCGCTCGCTCGCTCTTGGTGTCTCTGGAGAAGAAGCGGAGAGAGAGAGAGAGAGAGAGGTGGAGAGGAGGGAGGGGGTTTGCTGGGGTAGTCTCTAGAGGCTCCCCCTGCTGCCGCCATCGCCGTCGACGGCTCCTCCTCCCCTCCCCCGGTGGAGATCCGGGGTGGTGTTCCTCGGGTTCACGCATAGGAGGTGGCGGCTGCGCGCGCAGAGGCTCGGGGGCGAGGGCGGCGGCGCGGGCGAGATGAAGGGGTCGGCCATCCCGGCGGTCGCGATCATGCCCTCGCCGCTCTTCCTCTGGCGGTTCAAGGTTGTATTGTTTCTCCTATGGGGTTTATGCTGTTGCAAGATAGGTTGGGACTCTGTTATGAGAATGAGTGCTGATCTGCGAGACTTATTTCTTTACGAAGCTTTCTTATACTACAATCCGCTTCTTCTTGTGGCTCTGATGATTTGGTTATGGGGAGTAAACCTGTGGGTCTTTGCACAATCATCAGTGAATTACGCAAGGGTGTTTGATCTTGCACAAACACATTTATCGCATCGAGAAATATGGAGGTGTGCTACTTGGCTTACTTTGATTGTTCCCACGAGTATGACAGCTTACCTATATTTGTACTCACATGGAGAAGTGTCCCTTGCTGCATCTCAACCAGTTCTTTTATATGCTATCCTTCTTATAGTCCTCTTATCTCCTTTTGATATGTTTTACCTGTCGTCACGCTTTTACTTTCTGAGGACAGTGTGGCGTATAATGCTTCCATTGCAAGCAATTACATTCCCCGACTTCTTTTTGGCTGATATTTTTACATCCATGTCAAAGGTCTTCTCAGACTTGGAACGTTCAGTTTGTCGCATGGTCAATCGGCAGGTTGCAACGACCGCTTGGCTTGAAGCAGATTCAATTTGTGGCAGCCATTCTGTAGCTATTCCTCTAGTTCTTGTGTTCCCTTATTTGTGTCGACTCTTCCAATGCCTTCGACAATACAAAGATACAAAGGAGAAGACTTGTCTTCTTAATGCACTCAAGTACTCGACAGCGGTTCC-GGTGATTTTCCTTTCAGCTCTCAAGTATCATGTATTCCCTGACAAGTGGGTTAGCTTTTATCGACCCCTCTGGCTTATGTCCAGTGTTATAAATTCGCTGTATTCCTTTTACTGGGATATAAAGCGAGATTGGGATTTGAGCATCTTAACTAGGATTTTCATGTTCAAAAACCCAAGTACATGGACTAACCTTCTTTATGGGCAGATCTGGGTATATTACTGGGTGTTAGCCAGCAATCTTGTGCTCCGCTGTACATGGACGTACAAGCTTTCAGCACATCTTCGGCACAACTACCTGACAGTGTTTACAATAGCAGCGCTGGAAATATTGAGGCGGTTTCAGTGGGTGTTCTTCCGTGTCGAGAACGAGTGGAACAAGATGACAGCCAAGCAGAGTCTGGAAATGTCATCTGACATGCCCTCTGAAGGAGACAGGCTTTTGGATTCAAATAGTCATACAGTATGAACTACGAACCGCAGGTCTCATATTTTGTGATACCGATTCATCATTCTTTTAGTGACCCTTATAGCCCGATTCAAGTCGAAAATTCTGTTTTGTTTGTAGAGGCCAAAAGGTCAGGGTTACATGATAGGTTTCTATAAAAATTGATATTCTTGGCACACTACATATGCAATCCTTTTGGCTATATATATATATATATATATATATACCATTTGTAATCCCATTGAATCCAAAGAGGTGTTTGTTGACAGTTGACACATCAAAGAGGAATATTAATACCAAAGATTTTACATGTTAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK065252 [TCTTCGTCTTCTTCTCTTCCCTCCTCTCGCCCACCCCCCCTCGCAGATCTCGCCGCGCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGTCTCCGCGAAGTCGTTCCCGCCGCCGCCGCCGCGGGCACCGCCCACGCGCTCCGTTCCGGCAGGCGGCGCGCGCTCGCTCGCTCGCTCTTGGTGTCTCTGGAGAAGAAGCGGAGAGAGAGAGAGAGAGAGAGGTGGAGAGGAGGGAGGGGGTTTGCTGGGGTAGTCTCTAGAGGCTCCCCCTGCTGCCGCCATCGCCGTCGACGGCTCCTCCTCCCCTCCCCCGGTGGAGATCCGGGGTGGTGTTCCTCGGGTTCACGCATAGGAGGTGGCGGCTGCGCGCGCAGAGGCTCGGGGGCGAGGGCGGCGGCGCGGGCGAGATGAAGGGGTCGGCCATCCCGGCGGTCGCGATCATGCCCTCGCCGCTCTTCCTCTGGCGGTTCAAGGTTGTATTGTTTCTCCTATGGGGTTTATGCTGTTGCAAGATAGGTTGGGACTCTGTTATGAGAATGAGTGCTGATCTGCGAGACTTATTTCTTTACGAAGCTTTCTTATACTACAATCCGCTTCTTCTTGTGGCTCTGATGATTTGGTTATGGGGAGTAAACCTGTGGGTCTTTGCACAATCATCAGTGAATTACGCAAGGGTGTTTGATCTTGCACAAACACATTTATCGCATCGAGAAATATGGAGGTGTGCTACTTGGCTTACTTTGATTGTTCCCACGAGTATGACAGCTTACCTATATTTGTACTCACATGGAGAAGTGTCCCTTGCTGCATCTCAACCGGTTCTTTTATATGCTATCCTTCTTATAGTCCTCTTATCTCCTTTTGATATGTTTTACCTGTCGTCACGCTTTTACTTTCTGAGGACAGTGTGGCGTATAATGCTTCCATTGCAAGCAATTACATTCCCCGACTTCTTTTTGGCTGATATTTTTACATCCATGTCAAAGGTCTTCTCAGACTTGGAACGTTCAGTTTGTCGCATGGTCAATCGGCAGGTTGCAACGACCGCTTGGCTTGAAGCAGATTCAATTTGTGGCAGCCATTCTGTAGCTATTCCTCTAGTTCTTGTGTTCCCTTATTTGTGTCGACTCTTCCAATGCCTTCGACAATACAAAGATACAAAGGAGAAGACTTGTCTTCTTAATGCACTCAAGTACTCGACAGCGGTTCC GGTGATTTTCCTTTCAGCTCTCAAGTATCATGTATTCCCTGACAAGTGGGTTAGCTTTTATCGACCCCTCTGGCTTATGTCCAGTGTTATAAATTCGCTGTATTCCTTTTACTGGGATATAAAGCGAGATTGGGATTTGAGCATCTTAACTAGGATTTTCATGTTCAAAAACCCAAGTACATGGACTAACCTTCTTTATGGGCAGATCTGGGTATATTACTGGGTGTTAGCCAGCAATCTTGTGCTCCGCTGTACATGGACGTACAAGCTTTCAGCACATCTTCGGCACAACTACCTGACAGTGTTTACAATAGCAGCGCTGGAAATATTGAGGCGGTTTCAGTGGGTGTTCTTCCGTGTCGAGAACGAGTGGAACAAGATGACAGCCAAGCAGAGTCTGGAAATGTCATCTGACATGCCCTCTGAAGGAGACAGGCTTTTGGATTCAAATAGTCATACAGTATGAACTACGAACCGCAGGTCTCATATTTTGTGATACCGATTCATCATTCTTTTAGTGACCCTTATAGCCCGATTCAAGTCGAAAATTCTGTTTTGTTTGTAGAGGCCAAAAGGTCAGGGTTACATGATAGGTTTCTATAAAAATTGATATTCTTGGCACACTACATATGCAATCCTTTTGGCTATATATATATATATATATATATATACCATTTGTAATCCCATTGAATCCAAAGAGGTGTTTGTTGACAGTTGACACATCAAAGAGGAATATTAATAC ]
[+] EMBL CB684242 [ GTTGGGACTCTGTTATGAGAATGAGTGCTGATCTGCGAGACTTATTTCTTTACGAAGCTTTCTTATACTACAATCCGCTTCTTCTTGTGGCTCTGATGATTTGGTTATGGGGAGTAAACCTGTGGGTCTTTGCACAATCATCAGTGAATTACGCAAGGGTGTTTGATCTTGCACAAACACATTTATCGCATCGAGAAATATGGAGGTGTGCTACTTGGCTTACTTTGATTGTTCCCACGAGTATGACAGCTTACCTATATTTGTACTCACATGGAGAAGTGTCCCTTGCTGCATCTCAACCAGTTCTTTTATATGCTATCCTTCTTATAGTCCTCTTATCTCCTTTTGATATGTTTTACCTGTCGTCACGCTTTTACTTTCTGAGGACAGTGTGGCGTATAATGCTTCCATTGCAAGCAATTACATTCCCCGACTTCTTTTTGGCTGATATTTTTACATCCATGTCAAAGGTCTTCTCAGACTTGGAACGTTCAGTTTGTCGCATGGTCAATCGGCAGGTTGCAACGACCGCTTGGCTTGAAGCAGATTCAATTTGTGGCAGCCATTCTGTAGCTATTCCTCTAGTTCTTGTGTTCCCTTATTTGTGTCGACTCTTCCAATGCCTTCGACAATACAAAGATACAAAGGAGAAGACTTGTCTTCTTAATGCACTCAAGTACTCGACAGCGGTTCC GGTGATTTTCCTTTCAGCTCTCAAGTATCATGTATTCCCTGACAAGTGGGTTAGCTTTTATCGACCCCTCTGGCTTATGTCCAGTGTTATAAATTCGCTGT ]
[+] EMBL OSR22411A [ CTGATGATTTGGTTATGGGGAGTAAACCTGTGGGTCTTTGCACAATCATCAGNGAATTACGCAAGGGTGTTTGATCTTGCACAAACACATTTATCGCATCGAGAAATATGGAGGTGTGCTACTTGGCTTACTTTGATTGTTCCCACGAGTATGACAGCTTACCTATATTTGTACTCACATGGAGAAGTGTCCCTTGCTGCATCTCAACCAGTTCTTTTATATGCTATCCTTCTTATAGTCCTCTTATCTCCTTTTGATATGTTTTACCTGTCGTCACGCTTTTA ]
[+] EMBL CF323539 [ ACCAGTTCTTTTATATGCTATCCTTCTTATAGTCCTCTTATCTCCTTTTGATATGTTTTACCTGTCGTCACGCTTTTACTTTCTGAGGACAGTGTGGCGTATAATGCTTCCATTGCAAGCAATTACATTCCCCGACTTCTTTTTGGCTGATATTTTTACATCCATGTCAAAGGTCTTCTCAGACTTGGAACGTTCAGTTTGTCGCATGGTCAATCGGCAGGTTGCAACGACCGCTTGGCTTGAAGCAGATTCAATTTGTGGCAGCCATTCTGTAGCTATTCCTCTAGTTCTTGTGTTCCCTTATTTGTGTCGACTCTTCCAATGCCTTCGACAATACAAAGATACAAAGGAGAAGACTTGTCTTCTTAATGCACTCAAGTACTCGACAGCGGTTCC GGTGATTTTCCTTTCAGCTCTCAAGTATCATGTATTCCCTGACAAGTGGGTTAGCTNTTATCGACCCCTCTGGCTTATGTCCAGTGTTATAAATTCGCTGTATTCCTTTTACTGGGATA ]
[+] EMBL CF324201 [ ACCAGTTCTTTTATATGCTATCCTTCTTATAGTCCTCTTATCTCCTTTTGATATGTTTTACCTGTCGTCACGCTTTTACTTTCTGAGGACAGTGTGGCGTATAATGCTTCCATTGCAAGCAATTACATTCCCCGACTTCTTTTTGGCTGATATTTTTACATCCATGTCAAAGGTCTTCTCAGACTTGGAACGTTCAGTTTGTCGCATGGTCAATCGGCAGGTTGCAACGACCGCTTGGCTTGAAGCAGATTCAATTTGTGGCAGCCATTCTGTAGCTATTCCTCTAGTTCTTGTGTTCCCTTATTTGTGTCGACTCTTCCAATGCCTTCGACAATACAAAGATACAAAGGAGAAGACTTGTCTTCTTAATGCACTCAAGTACTCGACAGCGGTTCCGGGTGATTTTCCTTTCAGCTCTCAAGTATCATGTATTCCCTGACAAGTGGGTTAGCTTTTATCGACCCCTCTGGCTTATGTCCAGTGTTATAAATTCGCTGTATTCCTTTTACTGGGATA ]
[+] EMBL AU160953 [ ttgaCTAGTTCTTGTGTTCCCTTATTTGTGTCGACTCTTCCAATGCCTTCGACAATACAAAGATACAAAGGAGAAGACTTGTCTTCTTAATGCACTCAAGTACTCGACAGCGGTTCC GGTGATTTTCCTTTCAGCTCTCAAGTATCATGTATTCCCTGACAAGTGGGTTAGCTTTTATCGACCCCTCTGGCTTATGTCCAGTGTTATAAATTCGCTGTATTCCTTTTACTGGGATATAAAGCGAGATTGGGATTTGAGCATCTTAACTAGGATTTTCATGTTCAAAAACCCAAGTACATGGACTAACCTTCTTTATGGGCAGATCTGGGTATATTACTGGGTGNTAGCCAGCAATCTTGTG ]
[-] EMBL CB684243 [ GTGATTTTCCTTTCAGCTCTCAAGTATCATGTATTCCCTGACAAGTGGGTTAGCTTTTATCGACCCCTCTGGCTTATGTCCAGTGTTATAAATTCGCTGTATTCCTTTTACTGGGATATAAAGCGAGATTGGGATTTGAGCATCTTAACTAGGATTTTCATGTTCAAAAACCCAAGTACATGGACTAACCTTCTTTATGGGCAGATCTGGGTATATTACTGGGTGTTAGCCAGCAATCTTGTGCTCCGCTGTACATGGACGTACAAGCTTTCAGCACATCTTCGGCACAACTACCTGACAGTGTTTACAATAGCAGCGCTGGAAATATTGAGGCGGTTTCAGTGGGTGTTCTTCCGTGTCGAGAACGAGTGGAACAAGATGACAGCCAAGCAGAGTCTGGAAATGTCATCTGACATGCCCTCTGAAGGAGACAGGCTTTTGGATTCAAATAGTCATACAGTATGAACTACGAACCGCAGGTCTCATATTTTGTGATACCGATTCATCATTCTTTTAGTGACCCTTATAGCCCGATTCAAGTCGAAAATTCTGTTTTGTTTGTAGAGGCCAAAAGGTCAGGGTTACATGATAGGTTTCTATAAAAATTGATATTCTTGGCACACTACATATGCAATCCTTTTGGCTATATATATATATATATATATATATACCATTTGTAATCCCATTGAATCCAAAGAGGTGTTTGTTGACAGTTGACACATCAAAGAGGAATATTAATACCAAAGATTTTACAT ]
[-] EMBL CB660080 [ ATATTCCTGGGGGTTAGCCAGCAATTTTGTGCTCCGCTGTACATGGACGTACAAGCTTTCAGCACATTTTTGGCACAACTACCTGACAGTGTTTACAATAGCAGCGCTGGAAATATTGAGGCGGTTTCAGTGGGTGTTTTTCCGTGTCGAGAACGAGTGGAACAAGATGACAGCCAAGCAGAGTTTGGAAATGTCATTTGACATGCCCTTTGAAGGAGACAGGCTTTTGGATTCAAATAGTCATACAGTATGAACTACGAACCGCAGGTTTCATATTTTGTGATACCGATTCATCATTTTTTTAGTGACCCTTATAGCCCGATTCAAGTCGAAAATTTTGTTTTGTTTGTAGAGGCCAAAAGGTCAGGGTTACATGATAGGTTTTTATAAAAATTGATATTTTTGGCACACTACATATGCAATCCTTTTGGCTATATATATATATATATATATATATACCATTTGTAATCCCATTGAATCCAAAGAGGTGTTTGTTGACAGTTGACACATCAAAGAGGAATTTTAATGGCAAAGATT ]
[+] EMBL AU101660 [ tAAAAGGTCAGGGTTACATGATAGGTTTCTATAAAAATTGATATTCTTGGCACACTACATATGCAATCCTTTTGGCTATATATATATATATATATATATATACCATTTGTAATCCCATTGAATCCAAAGAGGTGTTTGTTGACAGTTGACACATCAAAGAGGAATATTAATACCAAAGATTTTACATGTTAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13669#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[GCCGCTCTGAGGACAGTGTGGCGTATAATGCTTCCATTGCAAGTAAGTTGTACAATTTGTTAGTAAGGGGTGTGGTAGTTTTTGTTTTTAGCTGTGCAACATGCACTATGCTACTGCCTGTTGTGACTAAGCATATGCCTTTTATGTCCTTGCTGTGGAGCCAGCAATTAGATCAGACTAACTTTTTTGATGGTTTCCTTCCCCCCTGTTCTGCAGGCAATTACATTCCCCGACTTCTTTTTGGCTGATATTTTTACATCCATGTCAAAGGTATGGAGCAATTTATTTAAAATTGTTGGTTGTGGATTGTTTTGTGTACATTATTTCTGTATAGAGAATATAGGGAAAGACTTACTGTCTAATACTATATGATTCTCTGTTTGGCCTCTAGGATTTAATGTGTACAATGTTCTCTACAAATTAAAAAAGCACTACATGACATGCTATATTTTAGTTTGTAGAGAACTGTTTCTTGCTTGTATTTGGCCTGAGTTAGCATTCATGATACTTGGTATTTTACCATTTTGCCTAATTGTTGCATTTCTTCACAGGTCTTCTCAGACTTGGAACGTTCAGTTTGTCGCATGGTCAATCGGCAGGTTAATTTCTTA]
[+] EMBL AU225785 [GCCGCTCTGAGGACAGTGTGGCGTATAATGCTTCCATTGCAAGTAAGTTGTACAATTTGTTAGTAAGGGGTGTGGTAGTTTTTGTTTTTAGCTGTGCAACATGCACTATGCTACTGCCTGTTGTGACTAAGCATATGCCTTTTATGTCCTTGCTGTGGAGCCAGCAATTAGATCAGACTAACTTTTTTGATGGTTTCCTTCCCCCCTGTTCTGCAGGCAATTACATTCCCCGACTTCTTTTTGGCTGATATTTTTACATCCATGTCAAAGGTATGGAGCAATTTATTTAAAATTGTTGGTTGTGGATTGTTTTGTGTACATTATTTCTGTATAGAGAATATAGGGAAAGACTTACTGTCTAATACTATATGATTCTCTGTTTGGCCTCTAGGATTTAATGTGTACAATGTTCTCTACAAATTAAAAAAGCACTACATGACATGCTATATTTTAGTTTGTAGAGAACTGTTTCTTGCTTGTATTTGGCCTGAGTTAGCATTCATGATACTTGGTATTTTACCATTTTGCCTAATTGTTGCATTTCTTCACAGGTCTTCTCAGACTTGGAACGTTCAGTTTGTCGCATGGTCAATCGGCAGGTTAATTTCTTA]
consensusID : consensus_13669#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence
[GATCTCTATGTTCAAAAACCCAGGTTCATGGACTAACCTTCTTTATGGGCGAATCTGGGAATATTACTGCGTGGTAGCCAGCCATCTTGTGCTCCGCTGGACATGGACAGTACAAGCTTTCACCACATGTTCAGCTCAACTACCTGACAGTGTATACAATAACAGCGCTGGAAATATTGAGGCAGGTTTCAGTGGGGGTTCTTCCGTGTCTAGAACTAGTGGAACAGGATGACAGCCAAGCGGAGTCTGGAAATGTCATCTGACATGCCCTCTGAAGGAGACAGGCTTTTGGATTCAAATATGCATACAGAATGAACTACGATCCGTAGGTCTCATATTTTGTGATACCGATTCATCATTCTTTTATCGACCCTTATAGCCCGATTCAAGTCGAAAATTCTGTTTTGTTAGTAGAGGCCAACAGGTCAGGCATACATGATAGGTTTCTATAAAAATTGATATTCTTGGCACACTACATATGCAATCCTTTGGGCTATATGTATATATATATATATATACCATTTGGGATCCCATGGAATCCAAA]
[+] EMBL BE230320 [GATCTCTATGTTCAAAAACCCAGGTTCATGGACTAACCTTCTTTATGGGCGAATCTGGGAATATTACTGCGTGGTAGCCAGCCATCTTGTGCTCCGCTGGACATGGACAGTACAAGCTTTCACCACATGTTCAGCTCAACTACCTGACAGTGTATACAATAACAGCGCTGGAAATATTGAGGCAGGTTTCAGTGGGGGTTCTTCCGTGTCTAGAACTAGTGGAACAGGATGACAGCCAAGCGGAGTCTGGAAATGTCATCTGACATGCCCTCTGAAGGAGACAGGCTTTTGGATTCAAATATGCATACAGAATGAACTACGATCCGTAGGTCTCATATTTTGTGATACCGATTCATCATTCTTTTATCGACCCTTATAGCCCGATTCAAGTCGAAAATTCTGTTTTGTTAGTAGAGGCCAACAGGTCAGGCATACATGATAGGTTTCTATAAAAATTGATATTCTTGGCACACTACATATGCAATCCTTTGGGCTATATGTATATATATATATATATACCATTTGGGATCCCATGGAATCCAAA]
consensusID : consensus_13669#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence
[GTCATGTATCAGGTTATTGATATCTATCGAACCCGTCAGGGTCGTCANTATGTGTTGCTGAATATACCGAGTTCATTCATTGTCGTNTTGTAGTATGACCCTNTAGTAGCCTCGAGTGTCAAGTCGAAAATTTCTGCTTTTTGCTGTTGTTATGTAGGTCCATATAAGGTTCAGGGTGTACAGTGAGTAGGTTGTCTAGTAAAAATTGAGTATGTCGTTGGCACCACATACAGTAGTGCCAAGTCCGTGTGTGGCGCTAGTAGTATAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTACCCATTTTGGTAAGTCCCAGTGAAGTCCAGAAGAGGGTGTGTTGTTGACAGTTGACACATCAAAGAGGAATATTAATACCAAAGATTTTACATGTTATTATGATTGTTATATGACTTAATACTAATTGACATCTCCTCTTGCACAAAAAAAA]
[+] EMBL BQ907209 [GTCATGTATCAGGTTATTGATATCTATCGAACCCGTCAGGGTCGTCANTATGTGTTGCTGAATATACCGAGTTCATTCATTGTCGTNTTGTAGTATGACCCTNTAGTAGCCTCGAGTGTCAAGTCGAAAATTTCTGCTTTTTGCTGTTGTTATGTAGGTCCATATAAGGTTCAGGGTGTACAGTGAGTAGGTTGTCTAGTAAAAATTGAGTATGTCGTTGGCACCACATACAGTAGTGCCAAGTCCGTGTGTGGCGCTAGTAGTATAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTACCCATTTTGGTAAGTCCCAGTGAAGTCCAGAAGAGGGTGTGTTGTTGACAGTTGACACATCAAAGAGGAATATTAATACCAAAGATTTTACATGTTATTATGATTGTTATATGACTTAATACTAATTGACATCTCCTCTTGCACAAAAAAAA]
consensusID : consensus_13669#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence
[TCATATTTTGTGATACCGATTCATCATTCTTTTAGTGACCCTTATAGCCCGATTCAAGTCGAAAATTCTGTTTTGTTTGTAGAGGCCAAAAGGTCACGGGTTACATGATAGGTTTCTATAAAAATTGATATTCTTGGCACACTACATATGGCAATCCTTTTGGCTATATATATATATATATATATATATATATATATATACCATTTGTAATCCCTTGAATCCAAGAGGTGTTTGTTGACAGTTGACACATCAAAGAGGAATATTAATACCAAGATTTTACATGTTAAAAA]
[+] EMBL BM419292 [TCATATTTTGTGATACCGATTCATCATTCTTTTAGTGACCCTTATAGCCCGATTCAAGTCGAAAATTCTGTTTTGTTTGTAGAGGCCAAAAGGTCACGGGTTACATGATAGGTTTCTATAAAAATTGATATTCTTGGCACACTACATATGGCAATCCTTTTGGCTATATATATATATATATATATATATATATATATATACCATTTGTAATCCCTTGAATCCAAGAGGTGTTTGTTGACAGTTGACACATCAAAGAGGAATATTAATACCAAGATTTTACATGTTAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13669#0 TCTTCGTCTTCTTCTCTTCCCTCCTCTCGCCCACCCCCCCTCGCAGATCTCGCCGCGCTC 60
consensus_13669#2 ------------------------------------------------------------
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 ------------------------------------------------------------
consensus_13669#0 TCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGTCTCCGCGAAGTCGTTCCCGCCGCCG 120
consensus_13669#2 ------------------------------------------------------------
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 ------------------------------------------------------------
consensus_13669#0 CCGCCGCGGGCACCGCCCACGCGCTCCGTTCCGGCAGGCGGCGCGCGCTCGCTCGCTCGC 180
consensus_13669#2 ------------------------------------------------------------
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 ------------------------------------------------------------
consensus_13669#0 TCTTGGTGTCTCTGGAGAAGAAGCGGAGAGAGAGAGAGAGAGAGAGGTGGAGAGGAGGGA 240
consensus_13669#2 ------------------------------------------------------------
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 ------------------------------------------------------------
consensus_13669#0 GGGGGTTTGCTGGGGTAGTCTCTAGAGGCTCCCCCTGCTGCCGCCATCGCCGTCGACGGC 300
consensus_13669#2 ------------------------------------------------------------
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 ------------------------------------------------------------
consensus_13669#0 TCCTCCTCCCCTCCCCCGGTGGAGATCCGGGGTGGTGTTCCTCGGGTTCACGCATAGGAG 360
consensus_13669#2 ------------------------------------------------------------
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 ------------------------------------------------------------
consensus_13669#0 GTGGCGGCTGCGCGCGCAGAGGCTCGGGGGCGAGGGCGGCGGCGCGGGCGAGATGAAGGG 420
consensus_13669#2 ------------------------------------------------------------
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 ------------------------------------------------------------
consensus_13669#0 GTCGGCCATCCCGGCGGTCGCGATCATGCCCTCGCCGCTCTTCCTCTGGCGGTTCAAGGT 480
consensus_13669#2 ------------------------------------------------------------
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 ------------------------------------------------------------
consensus_13669#0 TGTATTGTTTCTCCTATGGGGTTTATGCTGTTGCAAGATAGGTTGGGACTCTGTTATGAG 540
consensus_13669#2 ------------------------------------------------------------
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 ------------------------------------------------------------
consensus_13669#0 AATGAGTGCTGATCTGCGAGACTTATTTCTTTACGAAGCTTTCTTATACTACAATCCGCT 600
consensus_13669#2 ------------------------------------------------------------
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 ------------------------------------------------------------
consensus_13669#0 TCTTCTTGTGGCTCTGATGATTTGGTTATGGGGAGTAAACCTGTGGGTCTTTGCACAATC 660
consensus_13669#2 ------------------------------------------------------------
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 ------------------------------------------------------------
consensus_13669#0 ATCAGTGAATTACGCAAGGGTGTTTGATCTTGCACAAACACATTTATCGCATCGAGAAAT 720
consensus_13669#2 ------------------------------------------------------------
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 ------------------------------------------------------------
consensus_13669#0 ATGGAGGTGTGCTACTTGGCTTACTTTGATTGTTCCCACGAGTATGACAGCTTACCTATA 780
consensus_13669#2 ------------------------------------------------------------
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 ------------------------------------------------------------
consensus_13669#0 TTTGTACTCACATGGAGAAGTGTCCCTTGCTGCATCTCAACCAGTTCTTTTATATGCTAT 840
consensus_13669#2 ------------------------------------------------------------
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 ------------------------------------------------------------
consensus_13669#0 CCTTCTTATAGTCCTCTTATCTCCTTTTGATATGTTTTACCTGTCGTCACGCTTTTACTT 900
consensus_13669#2 ------------------------------------------------------------
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 ------------------------------------------------------------
consensus_13669#0 TCTGAGGACAGTGTGGCGTATAATGCTTCCATTGCAAGCAATTACATTCCCCGACTTCTT 960
consensus_13669#2 ------------------------------------------------------------
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 ------------------------------------------------------------
consensus_13669#0 TTTGGCTGATATTTTTACATCCATGTCAAAGGTCTTCTCAGACTTGGAACGTTCAGTTTG 1020
consensus_13669#2 ------------------------------------------------------------
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 ------------------------------------------------------------
consensus_13669#0 TCGCATGGTCAATCGGCAGGTTGCAACGACCGCTTGGCTTGAAGCAGATTCAATTTGTGG 1080
consensus_13669#2 ------------------------------------------------------------
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 ------------------------------------------------------------
consensus_13669#0 CAGCCATTCTGTAGCTATTCCTCTAGTTCTTGTGTTCCCTTATTTGTGTCGACTCTTCCA 1140
consensus_13669#2 ------------------------------------------------------------
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 ------------------------------------------------------------
consensus_13669#0 ATGCCTTCGACAATACAAAGATACAAAGGAGAAGACTTGTCTTCTTAATGCACTCAAGTA 1200
consensus_13669#2 ------------------------------------------------------------
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 ------------------------------------------------------------
consensus_13669#0 CTCGACAGCGGTTCCGGTGATTTTCCTTTCAGCTCTCAAGTATCATGTATTCCCTGACAA 1260
consensus_13669#2 ------------------------------------------------------------
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 ------------------------------------------------------------
consensus_13669#0 GTGGGTTAGCTTTTATCGACCCCTCTGGCTTATGTCCAGTGTTATAAATTCGCTGTATTC 1320
consensus_13669#2 ------------------------------------------------------------
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 ------------------------------------------------------------
consensus_13669#0 CTTTTACTGGGATATAAAGCGAGATTGGGATTTGAGCATCTTAACTAGGATTTTCATGTT 1380
consensus_13669#2 ------------------------------------------------GATCTCTATGTT 12
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 -----------------------------------GCCGCTCTGAGGACAGTGTGGCGTA 25
consensus_13669#0 CAAAAACCCAAGTACATG-GACTAACCTTCTTTATGGGCAGATCTGGGTATATTACTGGG 1439
consensus_13669#2 CAAAAACCCAGGTTCATG-GACTAACCTTCTTTATGGGCGAATCTGGGAATATTACTGCG 71
consensus_13669#3 --------------------------GTCATGTATCAGGTTATTGATATCTATCGAACCC 34
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 TAATGCTTCCATTGCAAGTAAGTTGTACAATTTGTTAGTAAGGGGTGTGGTAGTTTTTGT 85
consensus_13669#0 TGTTAGCCAGCAATCTTGTGCTCCGCTGTACATGGAC-GTACAAGCTTTCAGCACATCTT 1498
consensus_13669#2 TGGTAGCCAGCCATCTTGTGCTCCGCTGGACATGGACAGTACAAGCTTTCACCACATGTT 131
consensus_13669#3 GTCAGGGTCGTCANTATGTGTT--GCTGAATATACCGAGTTCA----TTCATTGT-CGTN 87
consensus_13669#4 -------------TCATATTTT--GTG----ATACCGA---------TTCATCAT-TCTT 31
consensus_13669#1 TTTTAGCTGTGCAACATGCACTATGCTA---CTGCCTGTTGTGA---CTAAGCATATGCC 139
* * * * * *
consensus_13669#0 CGGCACAACTACCTGACAGTGTTTACAATAGCAGCGCTGGAAATATTGAGGC-G----GT 1553
consensus_13669#2 CAGCTCAACTACCTGACAGTGTATACAATAACAGCGCTGGAAATATTGAGGCAG----GT 187
consensus_13669#3 TTGTAGTATGACCCTNTAGTAGCCTCGAGTGTCAAGTCGAAAATTTCTGCTTTTTGCTGT 147
consensus_13669#4 TTA----GTGACCCTT--ATAGCCC---GATTCAAGTCGAAAATT-CTGTTTTGT----- 76
consensus_13669#1 TTTT---ATGTCCTTGCTGTGGAGCCAGCAATTAGATCAGACTAACTTTTTTGA------ 190
** * *
consensus_13669#0 TTCAGTGGGTGTTCTT-CCGTGTCGAGAACGAGTGGAACAAGATGACAGCCAAGCAGAGT 1612
consensus_13669#2 TTCAGTGGGGGTTCTT-CCGTGTCTAGAACTAGTGGAACAGGATGACAGCCAAGCGGAGT 246
consensus_13669#3 TGTTATGTAGGTCCATATAAGGTTCAGGGT--GTACAGTGAGTAGGTTGTCTAGTAAAAA 205
consensus_13669#4 --TTGTAGAGGCCAA---AAGGTCACGGGT---TACA-TGA-TAGGTT-TCTA-TAAAAA 124
consensus_13669#1 --TGGTTTCCTTCCCCCCTGTTCTGCAGGCAATTACA-TTCCCCGACTTCTTTTTGG--- 244
* * * *
consensus_13669#0 CTGGAAATGTCATCTGACATGCCCTCTGAAGGAGACAGGCTTTTGGATTCAAATAGTCAT 1672
consensus_13669#2 CTGGAAATGTCATCTGACATGCCCTCTGAAGGAGACAGGCTTTTGGATTCAAATATGCAT 306
consensus_13669#3 TTGAGTATGTCGT-TGGCACCACATACAGTAGTGCCAAGTCCGTGTGTGGCGCTAGTAGT 264
consensus_13669#4 TTGA---TATTCT-TGGCACACTACATA----TGGCAATCCTTT---TGGCTATATATAT 173
consensus_13669#1 CTGATATTTTTACATC-CATGTCAAAGGTATGGAGCAATTTATTTAAAATTGTTGGTTGT 303
** * * * ** ** * * *
consensus_13669#0 ACAGTAT-----GAAC-TACGAACCGCAGGTCTCATATTTTGTGATACCGATTCATCATT 1726
consensus_13669#2 ACAGAAT-----GAAC-TACGATCCGTAGGTCTCATATTTTGTGATACCGATTCATCATT 360
consensus_13669#3 ATAGTA------GTAG-TAGTAGTAGTAGTAGTAGTAGTA-GTAGTAGTAGTAC-CCATT 315
consensus_13669#4 ATATAT------ATAT-ATATATATATATATATA---------------------CCATT 205
consensus_13669#1 GGATTGTTTTGTGTACATTATTTCTGTATAGAGAATATAGGGAAAGACTTACTGTCTAAT 363
* * * * *
consensus_13669#0 CTTTTAGTGACCCTTATAGCCCGATTCAAGTCGAAAATTCTGTTTTGTTTGTAGAGGC-- 1784
consensus_13669#2 CTTTTATCGACCCTTATAGCCCGATTCAAGTCGAAAATTCTGTTTTGTTAGTAGAGGC-- 418
consensus_13669#3 TTGGTA--AGTCCCAGTGA----AGTCCAGAAGAGGGTGTGTTGTTGACAGTTGACACAT 369
consensus_13669#4 T--GTA--ATCCCTTG-------AATCCAAGAG---GTGT-TTGTTGACAGTTGACACAT 250
consensus_13669#1 ACTATATGATTCTCTGTTTGGCCTCTAGGATTTAATGTGTACAATGTTCTCTACAAATTA 423
** * * * * * *
consensus_13669#0 CAAAAGGTCAGGGTTACATGATAGGTTTCTATAAAAATTGATATTCTTGGCACACTACAT 1844
consensus_13669#2 CAACAGGTCAGGCATACATGATAGGTTTCTATAAAAATTGATATTCTTGGCACACTACAT 478
consensus_13669#3 CAAAGAGGAATATTAATACCAAAGATTT---TACATGTTATTATGATTGTTATATGACTT 426
consensus_13669#4 CAAAGAGGAATATTAATACCAA-GATTT---TACATGTTAAAAA---------------- 290
consensus_13669#1 AAAAAGCACTACATGACATGCTATATTT---TAGTTTGTAGAGAACTGTTTCTTGCTTGT 480
** * * *** ** *
consensus_13669#0 ATGCAATCCTTTTGGCTATATATATATATATATATATATATACCATTTGTAATCCCATTG 1904
consensus_13669#2 ATGCAATCCTTTGGGCTATATGTATATATATATATATAT--ACCATTTGGGATCCCATGG 536
consensus_13669#3 ----AATACTAATTGACATCTCCTCTTGCACAAAAAAAA--------------------- 461
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 ATTTGGCCTGAGTTAGCATTCATGATACTTGGTATTTTACCATTTTGCCTAATTGTTGCA 540
consensus_13669#0 AATCCAAAGAGGTGTTTGTTGACAGTTGACACATCAAAGAGGAATATTAATACCAAAGAT 1964
consensus_13669#2 AATCCAAA---------------------------------------------------- 544
consensus_13669#3 ------------------------------------------------------------
consensus_13669#4 ------------------------------------------------------------
consensus_13669#1 TTTCTTCACAGGTCTTCTCAGACTTGGAACGT-TCAGTTTGTCGCATGGTCAATCGGCAG 599
consensus_13669#0 TTTACATGTTAAAAAAAAAAAAAAAAAAA 1993
consensus_13669#2 -----------------------------
consensus_13669#3 -----------------------------
consensus_13669#4 -----------------------------
consensus_13669#1 GTTAATTTCTTA----------------- 611
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||