These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13670#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 3312 fasta sequence [CCCAGCAGCACGGGGAAGAAGAGGAGGAGGAAAACCCAAACCAAAATCCCCGGAGCTCGCGCCGGCTCGCCTCCCGCATTGCCTCGGCGCCGCTCGATCCGGGGTCGCGCCGACGCTGACCCGGTCGGAGGGCTCGATCTGGGCCCGGATCGGCCGGCATTCCCCGCCCCGCGCGCGCTCCGGCCCCGGGCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGGCCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGTTCGATTTGCCGTTGGATTCTTCGGACGAGGAGCTGCGGGATTACCTCATTAACGGAGAAGCGCTATGCTATGTTGCGGACAAGCTCATGCCCGGTGTTCTGGAGGGGACGTGGGGTGGTTATGCATCGGACCAACGGTCAAATGTGAAGAAGTTCCTCTCTGTTGTTGCAGAGATGGGGCTGCCAGGCTTTGGCGTGAAGGATCTTGAGGAGGGATCAATGTCTTCTATAGTGGAGTGTCTCTTGGCTTTAAAGGATAATGTGGCTACACAATTGGGTGGTCATATTTCTAACAGCACTGCTAAGACTCCAATCAGAAGGAAACTGGAACTTCGAGAAACTGATGGACCGGTGCTTTCAGTTGCCACACCAGGGAAAAGATACCCTAAGTCCCAGCAAAGAAGCCCTCTTCTTTCAGGACAAAAGATCAATGAGGTTGTCCAATTTAAGCATGGAACCTACACAGATCTTCCTGCTGCTAAGATCTCAGAGATGCTGCATTCAAATAGTTTAGATAATGCCCCTACCCAATCCCTTCTTAGAGTTGTTAATGGCATTCTGGATGAAAGTATTGAGAGGAAAAGAGGAGAAATACCACATCGTGTTGTTCATTTACTAAGGAATGTTATTCAGGAGATTGAGCACCGCATTGGTATTCAAGCAGATCACATTAGAAATCAAAATAGCATCATCAAGACACGGGAGGATAAGTATCGTTCAAAAATTAAAGCACTTGAGACATTAGTAAATGGAACAAATGAAGAAAACGAGATGGCAATAAATCGGCTTGAGGTAGTTAAGGTAGAGAAGTCAAAAATTGATGAGAAAAGAAAACTAGGAGAGCAAGACATGATTCGGCTGATCCGTGAAAAGGAGAATGCGGAGAATATAATTGCTAGCCTCCATCAAGAGATGCAAGTCATGAATAGGATGCATGAACAATTCCGTGAGCAAATGGAAACAAAAGCTAGGCAGATGGAGGAACACTTGACACTAAGAGCTAA-GGAGGCTGAGTTTTGTCTTATGCAGTCCAAAAAGAAAGTTGAAGAAGTTGAGGCTACTTCCCAATTAAAGTCACAACTCTGGAGCAAAAAAGCAAACATTTTTCAGAGTTTTATGAATAATCAGAAACTTTCTATCAAGGATATAAAGATATCATCTCAATCCATTAAACAAGAAATGTATGCCCTTCAAATGACATGGAGGGATGAAATATCAAATATTGGACATGACCTAAAAGGTTTAGTAGATGCTGCTGAAAATTACCATAAGGTTCTTGCTGAAAACCAGAAGTTATTTAATGAAGTGCAGGAATTGAAAGGCAACATCAGAGTATACTGTCGTGTTAGACCATTTCTCCCTGGCCAAGATGGGAAATTAACTGCAATTGACTATATTGGTGAAAATGGCGAGATTCTTATTGCAAACCCCTCCAAGCAAGGAAAGGAAGGGTATCGAATGTTTAAGTTTAACAAAGTGTTCGGTACACATTCCTCTCAAGCTGAAGTTTTCTCCGATATCCAACCTTTGATTAGATCAGTTCTTGATGGATTCAATGTTTGCATTTTTGCATATGGACAAACTGGTTCAGGAAAAACATACACAATGAGTGGACCAGGG-ACATC-AAG-AGAAG-ACT-GGGGTGTTAACTATCGTGCTTT-AAATGATCTGTTTGATATTTCTCTAAGTAGGA-AAAATGCATTCTCATATGAGGTGGGAGTGCAGATGGTTGAAATATACAATGAGCAAGTTCGCGATCTTCTGTCAAATGACATTGCACAAAAAAGACTTGGAATTTGGAGTACTTCTCAGCCTAATGGCCTTGTAGTTCCTGATGCAAGTTTACACCCTGTCAAATCAACATCAGACGTACTAGACTTGATGGAAATTGGACAGTCAAATAGAGCAGTTGGATCAACAGCTCTAAATGAAAGGAGCAGTCGCTCCCACAGCATTCTAACTGTGCATGTTAGAGGACTGGACGTGAAGAATGGTTCTACTTCTCGAGGATGTCTACATCTGATTGATCTCGCTGGAAGTGAGAGAGTTGAACGATCTGAAGCAACAGGAGACAGATTAAAAGAGGCACAGCATATTAACAAATCTCTCTCTGCTCTTGGAGATGTCATTTTTTCTTTGGCCCAGAAGAATGCCCATGTGCCATATAGAAACAGCAAGCTAACTCAAGTTCTTCAGAGTTCTTTAGGTGGACAAGCAAAGACACTAATGTTGGTTCAAATAAACCCTGATATTGAATCATATTCAGAAACCATAAGTACTTTAAAATTGGCTGAAAGGGTTTCTGGAGTTGAGTTAGGTGCTGCGAGAAGTAACAGAGAGGGGAAAGACATAAAAGAGCTGCTGGAACAGGTTGCATCTTTGAAAGATACAATAGCACGAAAAGATATGGAAATCGAACAGCTTCAGCTCCTTAAATCCAAATCTCCCAATTCAATGACAGACAGAAATGGCAGTAACTTGCTGAGACAATCTACTT-CCTCTACTGGTTTGTCATCACTTCCCGTGGCAAGCCAACAGAACCAACAGCTATCAGGATCCGTTGAAGCTGAAGCTGAAGATAATGCATCTGACGATGGTTGCTCAGTGGGGGAAACTGAATATTCTCCTGCTGGTGCTTCAGAAACATCAGCAGAACGAGCGCATAAAGCGCCATCAAGAATAACCAGATTCTTTCTCACGAAGAACGGGCAGCCATCAACTTCTAGA--CCAAAACCAAGGGAGGTTGTTCCGAAAACTCAAGGTAGCATGAGACCTGGAACTGCGCAGGCGACAGGAGGATCCTTAGCCAAGCCTTCCAAAAGACGGTAGAAATAGAATCTGACGAAGCATCCATGCAAGTTTGGCAACTGTGATGTAACTCAACTTTTGCGCTGAAACACA-CGGGGGGTAGTTTAGGAGGTGCTACTGGTGTTTTCTGTGTATCTGTATAAGTTTCGCTGGTCGACTCAACAA-----C----C-TGGTTAAAGA-TT-CAT-GA-TGAGCAGCGAACATTTGTACCAAAATTGTCCCGG] [+] EMBL AK101026 [CCCAGCAGCACGGGGAAGAAGAGGAGGAGGAAAACCCAAACCAAAATCCCCGGAGCTCGCGCCGGCTCGCCTCCCGCATTGCCTCGGCGCCGCTCGATCCGGGGTCGCGCCGACGCTGACCCGGTCGGAGGGCTCGATCTGGGCCCGGATCGGCCGGCATTCCCCGCCCCGCGCGCGCTCCGGCCCCGGGCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGGCCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGTTCGATTTGCCGTTGGATTCTTCGGACGAGGAGCTGCGGGATTACCTCATTAACGGAGAAGCGCTATGCTATGTTGCGGACAAGCTCATGCCCGGTGTTCTGGAGGGGACGTGGGGTGGTTATGCATCGGACCAACGGTCAAATGTGAAGAAGTTCCTCTCTGTTGTTGCAGAGATGGGGCTGCCAGGCTTTGGCGTGAAGGATCTTGAGGAGGGATCAATGTCTTCTATAGTGGAGTGTCTCTTGGCTTTAAAGGATAATGTGGCTACACAATTGGGTGGTCATATTTCTAACAGCACTGCTAAGACTCCAATCAGAAGGAAACTGGAACTTCGAGAAACTGATGGACCGGTGCTTTCAGTTGCCACACCAGGGAAAAGATACCCTAAGTCCCAGCAAAGAAGCCCTCTTCTTTCAGGACAAAAGATCAATGAGGTTGTCCAATTTAAGCATGGAACCTACACAGATCTTCCTGCTGCTAAGATCTCAGAGATGCTGCATTCAAATAGTTTAGATAATGCCCCTACCCAATCCCTTCTTAGAGTTGTTAATGGCATTCTGGATGAAAGTATTGAGAGGAAAAGAGGAGAAATACCACATCGTGTTGTTCATTTACTAAGGAATGTTATTCAGGAGATTGAGCACCGCATTGGTATTCAAGCAGATCACATTAGAAATCAAAATAGCATCATCAAGACACGGGAGGATAAGTATCGTTCAAAAATTAAAGCACTTGAGACATTAGTAAATGGAACAAATGAAGAAAACGAGATGGCAATAAATCGGCTTGAGGTAGTTAAGGTAGAGAAGTCAAAAATTGATGAGAAAAGAAAACTAGGAGAGCAAGACATGATTCGGCTGATCCGTGAAAAGGAGAATGCGGAGAATATAATTGCTAGCCTCCATCAAGAGATGCAAGTCATGAATAGGATGCATGAACAATTCCGTGAGCAAATGGAAACAAAAGCTAGGCAGATGGAGGAACACTTGACACTAAGAGCTAA GGAGGCTGAGTTTTGTCTTATGCAGTCCAAAAAGAAAGTTGAAGAAGTTGAGGCTACTTCCCAATTAAAGTCACAACTCTGGAGCAAAAAAGCAAACATTTTTCAGAGTTTTATGAATAATCAGAAACTTTCTATCAAGGATATAAAGATATCATCTCAATCCATTAAACAAGAAATGTATGCCCTTCAAATGACATGGAGGGATGAAATATCAAATATTGGACATGACCTAAAAGGTTTAGTAGATGCTGCTGAAAATTACCATAAGGTTCTTGCTGAAAACCAGAAGTTATTTAATGAAGTGCAGGAATTGAAAGGCAACATCAGAGTATACTGTCGTGTTAGACCATTTCTCCCTGGCCAAGATGGGAAATTAACTGCAATTGACTATATTGGTGAAAATGGCGAGATTCTTATTGCAAACCCCTCCAAGCAAGGAAAGGAAGGGTATCGAATGTTTAAGTTTAACAAAGTGTTCGGTACACATTCCTCTCAAGCTGAAGTTTTCTCCGATATCCAACCTTTGATTAGATCAGTTCTTGATGGATTCAATGTTTGCATTTTTGCATATGGACAAACTGGTTCAGGAAAAACATACACAATGAGTGGACCAGGG ACATC AAG AGAAG ACT GGGGTGTTAACTATCGTGCTTT AAATGATCTGTTTGATATTTCTCTAAGTAGGA AAAATGCATTCTCATATGAGGTGGGAGTGCAGATGGTTGAAATATACAATGAGCAAGTTCGCGATCTTCTGTCAAATGACATTGCACAAAAAAGACTTGGAATTTGGAGTACTTCTCAGCCTAATGGCCTTGTAGTTCCTGATGCAAGTTTACACCCTGTCAAATCAACATCAGACGTACTAGACTTGATGGAAATTGGACAGTCAAATAGAGCAGTTGGATCAACAGCTCTAAATGAAAGGAGCAGTCGCTCCCACAGCATTCTAACTGTGCATGTTAGAGGACTGGACGTGAAGAATGGTTCTACTTCTCGAGGATGTCTACATCTGATTGATCTCGCTGGAAGTGAGAGAGTTGAACGATCTGAAGCAACAGGAGACAGATTAAAAGAGGCACAGCATATTAACAAATCTCTCTCTGCTCTTGGAGATGTCATTTTTTCTTTGGCCCAGAAGAATGCCCATGTGCCATATAGAAACAGCAAGCTAACTCAAGTTCTTCAGAGTTCTTTAGGTGGACAAGCAAAGACACTAATGTTGGTTCAAATAAACCCTGATATTGAATCATATTCAGAAACCATAAGTACTTTAAAATTGGCTGAAAGGGTTTCTGGAGTTGAGTTAGGTGCTGCGAGAAGTAACAGAGAGGGGAAAGACATAAAAGAGCTGCTGGAACAGGTTGCATCTTTGAAAGATACAATAGCACGAAAAGATATGGAAATCGAACAGCTTCAGCTCCTTAAATCCAAATCTCCCAATTCAATGACAGACAGAAATGGCAGTAACTTGCTGAGACAATCTACTT CCTCTACTGGTTTGTCATCACTTCCCGTGGCAAGCCAACAGAACCAACAGCTATCAGGATCCGTTGAAGCTGAAGCTGAAGATAATGCATCTGACGATGGTTGCTCAGTGGGGGAAACTGAGTATTCTCCTGCTGGTGCTTCAGAAACATCAGCAGAACGAGCGCATAAAGCGCCATCAAGAATAACCAGATTCTTTCTCACGAAGAACGGGCAGCCATCAACTTCTAGA CCAAAACCAAGGGAGGTTGTTCCGAAAACTCAAGGTAGCATGAGACCTGGAACTGCGCAGGCGACAGGAGGATCCTTAGCCAAGCCTTCCAAAAGACGGTAGAAATAGAATCTGACGAAGCATCCATGCAAGTTTGGCAACTGTGATGTAACTCAACTTTTGCGCTGAAACACA CGGGGGGTAGTTTAGGAGGTGCTACTGGTGTTTTCTGTGTATCTGTATAAGTTTCGCTGGTCGACTCAACAA CGTATCTTGGTTAAAGA TT CAT GA TGAGCAGCGAA ] [+] EMBL CF307402 [ TGGGCCCGGATCGGCCGGCATTCCCCGCCCCGCGCGCGCTCCGGCCCCGGGCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGGCCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGTTCGATTTGCCGTTGGATTCTTCGGACGAGGAGCTGCGGGATTACCTCATTAACGGAGAAGCGCTATGCTATGTTGCGGACAAGCTCATGCCCGGTGTTCTGGAGGGGACGTGGGGTGGTTATGCATCGGACCAACGGTCAAATGTGAAGAAGTTCCTCTCTGTTGTTGCAGAGATGGGGCTGCCAGGCTTTGGCGTGAAGGATCTTGAGGAGGGATCAATGTCTTCTATAGTGGAGTGTCTCTTGGCTTTAAAGGATAATGTGGCTACACAATTGGGTGGTCATATTTCTAACAGCACTGCTAAGACTCCAATCAGAAGGAAACTGGAACTTCGAGAAACTGATGGACCGGTGCTTTCAGTTGCCACACCAGGGAAAAGATACCCTAAGTCCCAGCAAAGAAGCC ] [+] EMBL CF326125 [ GACGGTGAACGGCGAGTACGAGGACTTCGATGCGGCCAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGTTCGATTTGCCGTTGGATTCTTCGGACGAGGAGCTGCGGGATTACCTCATTAACGGAGAAGCGCTATGCTATGTTGCGGACAAGCTCATGCCCGGTGTTCTGGAGGGGACGTGGGGTGGTTATGCATCGGACCAACGGTCAAATGTGAAGAAGTTCCTCTCTGTTGTTGCAGAGATGGGGCTGCCAGGCTTTGGCGTGAAGGATCTTGAGGAGGGATCAATGTCTTCTATAGTGGAGTGTCTCTTGGCTTTAAAGGATAATGTGGCTACACAATTGGGTGGTCATATTTCTAACAGCACTGCTAAGACTCCAATCAGAAGGAAACTGGAACTTCGAGAAACTGATGGACCGGTGCTTTCAGTTGCCACACCAGGGAAAAGATACCCTAAGTCCCAGCAAAGAAGCCCTCTTCTTTCAGGACAAAAGATCAATGAGGTTGTCCAATTTAAGCATGGAACCTACACAGATCTTCCTGCTGCTAAGATCTCAGAGATGCTGCATTCAAATAGTTTAGATAATGCCCCTACCCAATCCCTTCTTAGAGTTGTTAATGGCATTCTGGATGAAAGTATTG ] [+] EMBL CF323471 [ AATAGTTTAGATAATGCCCCTACCCAATCCCTTCTTAGAGTTGTTAATGGCATTCTGGATGAAAGTATTGAGAGGAAAAGAGGAGAAATACCACATCGTGTTGTTCATTTACTAAGGAATGTTATTCAGGAGATTGAGCACCGCATTGGTATTCAAGCAGATCACATTAGAAATCAAAATAGCATCATCAAGACACGGGAGGATAAGTATCGTTCAAAAATTAAAGCACTTGAGACATTAGTAAATGGAACAAATGAAGAAAACGAGATGGCAATAAATCGGCTTGAGGTAGTTAAGGTAGAGAAGTCAAAAATTGATGAGAAAAGAAAACTAGGAGAGCAAGACATGATTCGGCTGATCCGTGAAAAGGAGAATGCGGAGAATATAATTGCTAGCCTCCATCAAGAGATGCAAGTCATGAATAGGATGCATGAACAATTCCGTGAGCAAATGGAAACAAAAGCTAGGCAGATGGAGGAACACTTGACACTAAGAGCTAAGGGAGGCTGAGTTTTGT ] [+] EMBL CF304032 [ AGAAGTTGAGGCTACTTCCCAATTAAAGTCACAACTCTGGAGCAAAAAAGCAAACATTTTTCAGAGTTTTATGAATAATCAGAAACTTTCTATCAAGGATATAAAGATATCATCTCAATCCATTAAACAAGAAATGTATGCCCTTCAAATGACATGGAGGGATGAAATATCAAATATTGGACATGACCTAAAAGGTTTAGTAGATGCTGCTGAAAATTACCATAAGGTTCTTGCTGAAAACCAGAAGTTATTTAATGAAGTGCAGGAATTGAAAGGCAACATCAGAGTATACTGTCGTGTTAGACCATTTCTCCCTGGCCAAGATGGGAAATTAACTGCAATTGACTATATTGGTGAAAATGGCGAGATTCTTATTGCAAACCCCTCCAAGCAAGGAAAGGAAGGGTATCGAATGTTTAAGTTTAACAAAGTGTTCGGTACACATTCCTCTCAAGCTGAAGTTTTCTCCGATATCCAACCTTTGATTAGATCAGTTCTTGATGGATTCAATGTTTGCATTTTTGCATATGGACAAACTGGTTCAGGAAAAACATACACAATGAGTGGACCAGGG ACATC AAG AGAAG ACTGGGGGTGTTAACTATCGTGCTTT AAATGATCTGTTTGATATTTCTCTAAGTAGGA AAAATGCA ] [+] EMBL AU175140 [ CCAGGGNCCATCAAAGAAGAAGNACT GGGGTGTTNACTANCGTGCTTTAAAATGATCTGTTTGATATTTCTCTAAGTAGGACAAAATGCATTCTCATATGAGGTGGNAGTGCAGATGGTTGAAATATACAATGAGCAAGTTCGCGATCTTCTGTCAAATGACATTGCACAANAAAGACTTGGAATTTGGAGTACTTCTCAGCCTAATGGCCTTGTAGTTCCTGATGCAAGTTTACACCCTGTCAAATCAACATCAGACGTACTAGACTTGATGNAAATTGGGCAGNNAAATAGAGCAGTTGGATCAACAACTCTAAATGAAAGGAGCAGTCGCNCCCTCAGCATTCTAACTGTGCATGTTAGAGGACTGGACGTGAAGAAT ] [+] EMBL AK058804 [ TGAGCAAGTTCGCGATCTTCTGTCAAATGACATTGCACAAAAAAGACTTGGAATTTGGAGTACTTCTCAGCCTAATGGCCTTGTAGTTCCTGATGCAAGTTTACACCCTGTCAAATCAACATCAGACGTACTAGACTTGATGGAAATTGGACAGTCAAATAGAGCAGTTGGATCAACAGCTCTAAATGAAAGGAGCAGTCGCTCCCACAGCATTCTAACTGTGCATGTTAGAGGACTGGACGTGAAGAATGGTTCTACTTCTCGAGGATGTCTACATCTGATTGATCTCGCTGGAAGTGAGAGAGTTGAACGATCTGAAGCAACAGGAGACAGATTAAAAGAGGCACAGCATATTAACAAATCTCTCTCTGCTCTTGGAGATGTCATTTTTTCTTTGGCCCAGAAGAATGCCCATGTGCCATATAGAAACAGCAAGCTAACTCAAGTTCTTCAGAGTTCTTTAGGTGGACAAGCAAAGACACTAATGTTTGTTCAAATAAACCCTGATATTGAATCATATTCAGAAACCATAAGTACTTTAAAATTTGCTGAAAGGGTTTCTGGAGTTGAGTTAGGTGCTGCGAG AGTAACAGAGAGGGGAAAGACATAAAAGAGCTGCTGGAACAGGTTGCATCTTTGAAAGATACAATAGCACGAAAAGATATGGAAATCGAACAGCTTCAGCTCCTTAAATCCAAATCTCCCAATTCAATGACAGACAGAAATGGCAGTAACTTGCTGAGACAATCTACTT CCTCTACTGGTTTGTCATCACTTCCCGTGGCAAGCCAACAGAACCAACAGCTATCAGGATCCGTTGAAGCTGAAGCTGAAGATAATGCATCTGACGATGGTTGCTCAGTGGGGGAAACTGAGTATTCTCCTGCTGGTGCTTCAGAAACATCAGCAGAACGAGCGCATAAAGCGCCATCAAGAATAACCAGATTCTTTCTCACGAAGAACGGGCAGCCATCAACTTCTAGA CCAAAACCAAGGGAGGTTGTTCCGAAAACTCAAGGTGGCATGAGACCTGGAACTGCGCAGGCGACAGGAGGATCCTTAGCCAAGCCTTCCAAAAGACGGTAGAAATAGAATCTGACGAAGCATCCATGCAAGTTTGGCAACTGTGATGTAACTCAACTTTTGCGCTGAAACACA CGGGGGGTAGTTTAGGAGGTGCTACTGGTGTTTTCTGTGTATCTGTATAAGTTTCGCTGGTCGACTCAACAA CGTATCTTGGTTAAAGA TT CAT GA TGAGCAGCGAA ] [-] EMBL CB000235 [ CCCAATTCAATGACAGACAGAAATGCCAGTAACTTGCTGAGACAATCTACTT CCTTTACTGGTTTGTCATCACTTCCCGGGGCAAGCCACCAGAACCAACAGCTATCAGGATCCGTTGAAGTTGAAGCTGAAGATAATGCTTCTGACGATGGTTGCTCAGTGGGGGAAACTGAGTATTCTCCTGCTGGTGCTTCAGAACCATCAGCAGAACGAGCGCATAAAGCCCCATCAAGAATACCCAGATTTTTTCTCCCGAAGAACGGGCACCCATCAACTTTTAGC CCAAAACCAAGGGAGGTTGTTCCGAAAACTCAAGGTAGCATGAGCCCTGGAACTGCGCAGGCGCCAGGAGGATCCTTACCCAACCCTTCCAAAAGACGGTAGAAATAGAATCTGACGAAGCATCCATGCAAGTTTGGCAACTGTGATGTAACTCAACTTTTGCGCTGAAACCCC CGGGGGGTAGTTTAGGAGGTGCTACTGGTGTTTTCTGTGTATCTGTATAAGTTTCGCTGGTCGACTCAACAAGGTATT T TGGTTAACGA TT CAT GA TGAGCAGGGACCATTTGTCCCATTTTTGTCCCGG] [+] EMBL BI803059 [ CAATGACAGACAGAAATGCCAGTAACTT CTGAGCCAATCTACTT CCTCTACTGGTTTGTCATCACTTCCCGTGGCAAGCCAACAGAACCAACAGCTATCAGGATCCGTTGAAGCTGAAGCTGAAGATAATGCATCTGACGATGGTTGCTCAGTGGGGGAAACTGAATATTCTCCTGCTGGTGCTTCAGAAACATCAGCAGAACGAGCGCATAAAGCGCCATCAAGAATAACCAGATTCTTTCTCACGAAGAACGGGCAGCCATCAACTTCTAGACCCCAAACCCAAGGGAGGTTGTTCCGAAAACTCAAGGTAGCATGAGACCTGGAACTGCGCAGGCGACAGGAGGATCCTTAGCCAAGCCTTCC AAAGACGGTAGAAATAGAATCTGACGAAGCATCCATGCAAGTTTGGCAACTGTGATGTAACTCAACTTTTGCGCTGAAACACACCGGGGGGTAGTTTAGGAGGTGCTACTGGTGTTTTCTGTGTATCTGTATAAGTTTCGCTGGTCGACTCAACAA C C TGGTTAAAGACTTCCATCGATTGACCAGCGAACATTTGTACCAAAA ] [+] EMBL BI812946 [ TCTACTTCCCTCTACTGGTTTGTCATCACTTCCCGTGCCAA CCAACAGAACC ACAGCTATCAGGATCC TTGAAGCTGAAGCTGAAGATAATGCATCTGACGATGGTTGCTCAGTGGGGGAAACTGAATATTCTCCTGCTGGTGCTTCAGAAACATCAGCAGAACGAGCGCATAAAGCGCCATCAAGAATAACCAGATTCTTTCTCACGAAGAAC GGCAGCCATCAACTTCTAGA CCCAAACCAAGGGAGGTTGTTCCGAAAACTCAAGGTAGCATGAGACCTGGAACTGCGCAGGCGACAGGAGGATCCTTAGCCAAGCCTTCCCAAAGACGGTAGAAATAGAATCTGACGAAGCATCCATGCAAGTTTGGC ACTGTGATGTAACTCAACTTTTGCGCTGAAACACACCGGGGGGTAGTTTAGGAGGTGCTACTGGTGTTTTCTGTGTATCTGTATAAGTTTCGCTGGTCGACTCAACA C TGGTTAAAGA TT CAT GA TGAGCAGCGAACATTTGTACCCAAAaaaaaaa ] [+] EMBL BI804048 [ CTT CCTCTACTGGTTTGTCATCACTTCCCGTGGCAAGCCAACAGAACC ACAGCTATCAGGATCCGTTGAAGCTGAAGCTGAAGATAATGCATCTGACGATGGTTGCTCAGTGGGGGAAACTGAATATTCTCCTGCTGGTGCTTCAGAAACATCAGCAGAACGAGCGCATAAAGCGCCATCAAGAATAACCAGATTCTTTCTCACGAAGAACGGGCAGCCATCAACTTCTAGA CCCAAACCAAGGGAGGTTGTTCCGAAAACTCAAGGTAGCATGAGACCTGGAACTGCGCAGGCGACAGGAGGATCCTTAGCCAAGCCTTCC AAAGACGGTAGAAATAGAATCTGACGAAGCATCCATGCAAGTTTGGCAACTGTGATGTAACTCAACTTTTGCGCTGAAACACACCGGGGGGTAGTTTAGGAGGTGCTACTGGTGTTTTCTGTGTATCTGTATAAGTTTCGCTGGTCGACTCAACAA C TGGTTAAAGA TT CAT GA TGAGCAGCGAACATTTGTACCAAAA ] [+] EMBL BI803685 [ GTTTGTCATCACTTCCCGT GCAA CCAACAGAACCAACAGCTATCAGGATCCGTTGAAGCTGAAGCTGAAGATAATGCATCTGACGATGGTTGCTCAGTGGGGGAAACTGAATATTCTCCTGCTGGTGCTTCAGAAACATCAGCAGAACGAGCGCATAAAGCGCCATCAAGAATAACCAGATTCTTTCTCACGAAGAACGGGCAGCCATCAACTTCTAGA CC AAACCAAGGGAGGTTGTTCCGAAAACTCAAGGTAGCATGAGACCTGGAACTGCGCAGGCGACAGGAGGATCCTTAGCCAAGCCTTCC AAAGACGGTAGAAATAGAATCTGACGAAGCATCCATGCAAGTTTGGCAACTGTGATGTAACTCAACTTTTGCGCTGAAACACA CGGGGGGTAGTTTAGGAGGTGCTACTGGTGTTTTCTGTGTATCTGTATAAGTTTCGCTGGTCGACTCAACAA C TGGTTAAAGACTT CAT GA TGAGCAGCGAACATTTGTAAAAAAA ] consensusID : consensus_13670#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [TAAATCGGCTTGAGGTAGTTAAGGTAGAGAAGTCAAAAATTGATGAGAAAAGAAAACTAGGAGAGCAAGACATGATTCGGCTGATCCGTGAAAAGGAGAATGCGGAGAATATAATTGCTAGCCTCCATCAAGAGATGCAAGTCATGAATAGGATGCATGAACAATTCCGTGAGCAAATGGAAACAAAAGCTTAGGCAGATGGAGGAACACTTTGACACTTAAGAGCTTAAGGAGGCTTGAGTTTTTGTCTTTATTGCAGTNCCAAAAAGNAAGTTTAAGGAGTTNAGGCTACTTTCCCATTTAAAGTCACAACTCTGGGGCCAAAAAGCCAACATTTTTCCAGNGTTTTTTGGTTATCCAGNACTTTTTTCCAGGTTTTNAGGTTCCTCCCATNCCC] [+] EMBL AU065754 [TAAATCGGCTTGAGGTAGTTAAGGTAGAGAAGTCAAAAATTGATGAGAAAAGAAAACTAGGAGAGCAAGACATGATTCGGCTGATCCGTGAAAAGGAGAATGCGGAGAATATAATTGCTAGCCTCCATCAAGAGATGCAAGTCATGAATAGGATGCATGAACAATTCCGTGAGCAAATGGAAACAAAAGCTTAGGCAGATGGAGGAACACTTTGACACTTAAGAGCTTAAGGAGGCTTGAGTTTTTGTCTTTATTGCAGTNCCAAAAAGNAAGTTTAAGGAGTTNAGGCTACTTTCCCATTTAAAGTCACAACTCTGGGGCCAAAAAGCCAACATTTTTCCAGNGTTTTTTGGTTATCCAGNACTTTTTTCCAGGTTTTNAGGTTCCTCCCATNCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13670#0 CCCAGCAGCACGGGGAAGAAGAGGAGGAGGAAAACCCAAACCAAAATCCCCGGAGCTCGC 60 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 GCCGGCTCGCCTCCCGCATTGCCTCGGCGCCGCTCGATCCGGGGTCGCGCCGACGCTGAC 120 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 CCGGTCGGAGGGCTCGATCTGGGCCCGGATCGGCCGGCATTCCCCGCCCCGCGCGCGCTC 180 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 CGGCCCCGGGCGGTGAGGCATGGGGACGGTGAACGGCGAGTACGAGGACTTCGATGCGGC 240 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 CAATCGGCGTGCGGAGGTGATAGATTGGCTCGGCGGGTTACTGCCGGAGTTCGATTTGCC 300 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 GTTGGATTCTTCGGACGAGGAGCTGCGGGATTACCTCATTAACGGAGAAGCGCTATGCTA 360 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 TGTTGCGGACAAGCTCATGCCCGGTGTTCTGGAGGGGACGTGGGGTGGTTATGCATCGGA 420 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 CCAACGGTCAAATGTGAAGAAGTTCCTCTCTGTTGTTGCAGAGATGGGGCTGCCAGGCTT 480 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 TGGCGTGAAGGATCTTGAGGAGGGATCAATGTCTTCTATAGTGGAGTGTCTCTTGGCTTT 540 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 AAAGGATAATGTGGCTACACAATTGGGTGGTCATATTTCTAACAGCACTGCTAAGACTCC 600 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 AATCAGAAGGAAACTGGAACTTCGAGAAACTGATGGACCGGTGCTTTCAGTTGCCACACC 660 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 AGGGAAAAGATACCCTAAGTCCCAGCAAAGAAGCCCTCTTCTTTCAGGACAAAAGATCAA 720 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 TGAGGTTGTCCAATTTAAGCATGGAACCTACACAGATCTTCCTGCTGCTAAGATCTCAGA 780 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 GATGCTGCATTCAAATAGTTTAGATAATGCCCCTACCCAATCCCTTCTTAGAGTTGTTAA 840 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 TGGCATTCTGGATGAAAGTATTGAGAGGAAAAGAGGAGAAATACCACATCGTGTTGTTCA 900 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 TTTACTAAGGAATGTTATTCAGGAGATTGAGCACCGCATTGGTATTCAAGCAGATCACAT 960 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 TAGAAATCAAAATAGCATCATCAAGACACGGGAGGATAAGTATCGTTCAAAAATTAAAGC 1020 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 ACTTGAGACATTAGTAAATGGAACAAATGAAGAAAACGAGATGGCAATAAATCGGCTTGA 1080 consensus_13670#1 -----------------------------------------------TAAATCGGCTTGA 13 ************* consensus_13670#0 GGTAGTTAAGGTAGAGAAGTCAAAAATTGATGAGAAAAGAAAACTAGGAGAGCAAGACAT 1140 consensus_13670#1 GGTAGTTAAGGTAGAGAAGTCAAAAATTGATGAGAAAAGAAAACTAGGAGAGCAAGACAT 73 ************************************************************ consensus_13670#0 GATTCGGCTGATCCGTGAAAAGGAGAATGCGGAGAATATAATTGCTAGCCTCCATCAAGA 1200 consensus_13670#1 GATTCGGCTGATCCGTGAAAAGGAGAATGCGGAGAATATAATTGCTAGCCTCCATCAAGA 133 ************************************************************ consensus_13670#0 GATGCAAGTCATGAATAGGATGCATGAACAATTCCGTGAGCAAATGGAAACAAAAGCT-A 1259 consensus_13670#1 GATGCAAGTCATGAATAGGATGCATGAACAATTCCGTGAGCAAATGGAAACAAAAGCTTA 193 ********************************************************** * consensus_13670#0 GGCAGATGGAGGAACACTT-GACACT-AAGAGCT-AAGGAGGCT-GAGTTTT-GTCTTA- 1313 consensus_13670#1 GGCAGATGGAGGAACACTTTGACACTTAAGAGCTTAAGGAGGCTTGAGTTTTTGTCTTTA 253 ******************* ****** ******* ********* ******* ***** consensus_13670#0 -TGCAGTCC-AAAAAGAAAGTTGAAGAAGTTGAGGCTACTT-CCCAATTAAAGTCACAAC 1370 consensus_13670#1 TTGCAGTNCCAAAAAGNAAGTTTAAGGAGTTNAGGCTACTTTCCCATTTAAAGTCACAAC 313 ****** * ****** ***** *** **** ********* **** ************* consensus_13670#0 TCTGGAGCAAAAAAGCAAACATTTTTC-AGAGTTTTATGAATAATCAGAAACTTTCTATC 1429 consensus_13670#1 TCTGGGGCCAAAAAGCCAACATTTTTCCAGNGTTTTTTGGTTATCCAGNA--CTTTTTTC 371 ***** ** ******* ********** ** ***** ** ** *** * ** * ** consensus_13670#0 AAGGATATAAAGATATCATCTCAATCCATTAAACAAGAAATGTATGCCCTTCAAATGACA 1489 consensus_13670#1 CAGGTTTTNAGGTT--CCTCCCATNCCC-------------------------------- 397 *** * * * * * * ** ** ** consensus_13670#0 TGGAGGGATGAAATATCAAATATTGGACATGACCTAAAAGGTTTAGTAGATGCTGCTGAA 1549 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 AATTACCATAAGGTTCTTGCTGAAAACCAGAAGTTATTTAATGAAGTGCAGGAATTGAAA 1609 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 GGCAACATCAGAGTATACTGTCGTGTTAGACCATTTCTCCCTGGCCAAGATGGGAAATTA 1669 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 ACTGCAATTGACTATATTGGTGAAAATGGCGAGATTCTTATTGCAAACCCCTCCAAGCAA 1729 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 GGAAAGGAAGGGTATCGAATGTTTAAGTTTAACAAAGTGTTCGGTACACATTCCTCTCAA 1789 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 GCTGAAGTTTTCTCCGATATCCAACCTTTGATTAGATCAGTTCTTGATGGATTCAATGTT 1849 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 TGCATTTTTGCATATGGACAAACTGGTTCAGGAAAAACATACACAATGAGTGGACCAGGG 1909 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 ACATCAAGAGAAGACTGGGGTGTTAACTATCGTGCTTTAAATGATCTGTTTGATATTTCT 1969 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 CTAAGTAGGAAAAATGCATTCTCATATGAGGTGGGAGTGCAGATGGTTGAAATATACAAT 2029 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 GAGCAAGTTCGCGATCTTCTGTCAAATGACATTGCACAAAAAAGACTTGGAATTTGGAGT 2089 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 ACTTCTCAGCCTAATGGCCTTGTAGTTCCTGATGCAAGTTTACACCCTGTCAAATCAACA 2149 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 TCAGACGTACTAGACTTGATGGAAATTGGACAGTCAAATAGAGCAGTTGGATCAACAGCT 2209 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 CTAAATGAAAGGAGCAGTCGCTCCCACAGCATTCTAACTGTGCATGTTAGAGGACTGGAC 2269 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 GTGAAGAATGGTTCTACTTCTCGAGGATGTCTACATCTGATTGATCTCGCTGGAAGTGAG 2329 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 AGAGTTGAACGATCTGAAGCAACAGGAGACAGATTAAAAGAGGCACAGCATATTAACAAA 2389 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 TCTCTCTCTGCTCTTGGAGATGTCATTTTTTCTTTGGCCCAGAAGAATGCCCATGTGCCA 2449 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 TATAGAAACAGCAAGCTAACTCAAGTTCTTCAGAGTTCTTTAGGTGGACAAGCAAAGACA 2509 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 CTAATGTTGGTTCAAATAAACCCTGATATTGAATCATATTCAGAAACCATAAGTACTTTA 2569 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 AAATTGGCTGAAAGGGTTTCTGGAGTTGAGTTAGGTGCTGCGAGAAGTAACAGAGAGGGG 2629 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 AAAGACATAAAAGAGCTGCTGGAACAGGTTGCATCTTTGAAAGATACAATAGCACGAAAA 2689 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 GATATGGAAATCGAACAGCTTCAGCTCCTTAAATCCAAATCTCCCAATTCAATGACAGAC 2749 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 AGAAATGGCAGTAACTTGCTGAGACAATCTACTTCCTCTACTGGTTTGTCATCACTTCCC 2809 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 GTGGCAAGCCAACAGAACCAACAGCTATCAGGATCCGTTGAAGCTGAAGCTGAAGATAAT 2869 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 GCATCTGACGATGGTTGCTCAGTGGGGGAAACTGAATATTCTCCTGCTGGTGCTTCAGAA 2929 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 ACATCAGCAGAACGAGCGCATAAAGCGCCATCAAGAATAACCAGATTCTTTCTCACGAAG 2989 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 AACGGGCAGCCATCAACTTCTAGACCAAAACCAAGGGAGGTTGTTCCGAAAACTCAAGGT 3049 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 AGCATGAGACCTGGAACTGCGCAGGCGACAGGAGGATCCTTAGCCAAGCCTTCCAAAAGA 3109 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 CGGTAGAAATAGAATCTGACGAAGCATCCATGCAAGTTTGGCAACTGTGATGTAACTCAA 3169 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 CTTTTGCGCTGAAACACACGGGGGGTAGTTTAGGAGGTGCTACTGGTGTTTTCTGTGTAT 3229 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 CTGTATAAGTTTCGCTGGTCGACTCAACAACCTGGTTAAAGATTCATGATGAGCAGCGAA 3289 consensus_13670#1 ------------------------------------------------------------ consensus_13670#0 CATTTGTACCAAAATTGTCCCGG 3312 consensus_13670#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||