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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13675#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 707 fasta sequence
[AGTAGAAAAGTTTTTACCTGAGGAGAATCAATCACCGATCTGCAGACTGCAGCCATGGCCATGAGGGCAATCACGCTGTCCCACTCGCAGAGCGCCTCGTTTGGGCACCACCACCACCAAACCATGCCGTCCTCCTTCAGGCCAAGCACTGCCTCCACCAGATCAGTGAAGGTCTACGCAAAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCA-TATGTGGATGTTGACGGGGAATACGTAGAGGAA-GGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAGGTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACCGACCAACATCTTCGCCAAATTGTTCGCCAGATGAACTTCAATTGTACAATCAAAGACATATTTTTACTCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTCAGTTTTGCCATATAAAATGGTATAAA---AAAAAAAAAAAAACACTGTCA]
[+] EMBL CF305184 [AGTAGAAAAGTTTTTACCTGAGGAGAATCAATCACCGATCTGCAGACTGCAGCCATGGCCATGAGGGCAATCACGCTGTCCCACTCGCAGAGCGCCTCGTTTGGGCACCACCACCACCAAACCATGCCGTCCTCCTTCAGGCCAAGCACTGCCTCCACCAGATCAGTGAAGGTCTACGCAAAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCA TATGTGGATGTTGACGGGGAATACGTAGAGGAA GGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAGGTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACCGACCAACATCTTCGCCAAATTGTTCGCCAGATGAACTTCAATTGTACAATCAAAGACATATTTTTACTCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAA ]
[+] EMBL OSS10396A [ GTTTCTACCTGAGGAGAATCAATCACCGATCTGCAGACTGCAGCCATGGCCATGAGGGCAATCACGCTGTCCCACTCGCAGAGCGNCTCGTTTGGGCACCACCACCACCAAACCATGCCGTCCTCCTTCAGGCCAAGCACTGNCTCCACCAGATCAGTGAAGNTCTACGCAAAGGAAGATGAGGAGAAGGGCAGCAAGCAG ]
[+] EMBL CF295923 [ ACCTGAGGAGAATCAATCACCGATCTGCAGACTGCAGCCATGGCCATGAGGGCAATCACGCTGTCCCACTCGCAGAGCGCCTCGTTTGGGCACCACCACCACCACACCATGCCGTCCTCCTTCAGGCCAAGCACTGCCTCCACCAGATCAGTGAAGGTCTACGCAAAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCA TATGTGGATGTTGACGGGGAATACGTAGAGGAA GGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAGGTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACTGACCAACATCTTCGC ]
[+] EMBL CF305493 [ CTGAGGAGAATCAATCACCGATCTGCAGACTGCAGCCATGGCCATGAGGGCAATCACGCTGTCCCACTCGCAGAGCGCCTCGTTTGGGCACCACCACCACCAAACCATGCCGTCCTCCTTCAGGCCAAGCACTGCCTCCACCAGATCAGTGAAGGTCTACGCAAAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCA TATGTGGATGTTGACGGGGAATACGTAGAGGAAGGGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAGGTCGACAAGCTAGGAAGATATGCACATGTC ]
[+] EMBL CF294208 [ TCAATCACCGATCTGCAGACTGCAGCCATGGCCATGAGGGCAATCACGCTGTCCCACTCGCAGAGCGCCTCGTTTGGGCACCACCACCACCAAACCATGCCGTCCTCCTTCAGGCCAAGCACTGCCTCCACCAGATCAGTGAAGGTCTACGCAAAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCA TATGT ]
[+] EMBL CF297764 [ TCAATCACCGATCTGCAGACTGCAGCCATGGCCATGAGGGCAATCACGCTGTCCCACTCGCAGAGCGCCTCGTTTGGGCACCACCACCACCAAACCATGCCGTCCTCCTTCAGGCCAAGCACTGCCTCCACCAGATCAGTGAAGGTCTACGCAAAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCATTATGTGGATGTTGACAGGGAATACGTAGAGGAA GGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCATGCAGGTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAA ]
[-] EMBL CF294207 [ CACTGCCTCCACCAGATCAGTGAAGGTCTACGCAAAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCA TATGTGGATGTTGACGGGGAATACGTAGAGGAA GGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAGGTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACCGACCAACATTTTCGCCAAATTGTTCGCCAGATGAACTTCAATTGTACAATCAAAGACATATTTTTACTCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTCAGTTTTGCCATATAAAATGGTATACAGGGAGCAAAAAAAA ]
[-] EMBL CF297765 [ TGAAGGTCTACGCAAAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCA TATGTGGATGTTGACAGGGAATACGTAGAGGAA GGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAGGTCGACTAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACCGACCAACATCTTCGCCAAATTGTTCGCCAGATGAACTTCAATTGTACAATCAAAGACATATTTTTACTCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTCAGTTTTGCCATATAAAATGGTAAAAA AAAA ]
[-] EMBL CF295924 [ GGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCA TATGTGGATGTTGACGGGGAATACGTAGAGGAA GGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAGGTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACTGACCAACATCTTCGCCAAATTGTTCGCCAGATGAACTTCAATTGTACAATCAAAGACATATTTTTACTCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTCAGTTTAGCCATATAAAATGGTATAAA AAAAAAAAAAAAACACTGTCA]
[+] EMBL AU057865 [ AGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCA TATGTGGATGTTGACGGGGAATACGTAGAGGAA GGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAGGTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACCGACCAACATCTTCGCCAAATTGTTCGCCAGATGAACTTCAATTGTACAATCAAAGACATATTTTTACTCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTCAGTTTTGCCATATAAAATGGTAAAAA AAAAAAA ]
[+] EMBL AA751952 [ annaGGGAATACGTGCCNGAA GGTAAGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCANGTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACCGACCAACATCTTCGCCAAATTGTTCGCCAGATGAACTTCAATTGTACAATCAAAGACATATTTTTACTCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTCAGTTTTGCCATAAAAAAaaa ]
consensusID : consensus_13675#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence
[AAGGTCTACGCAAAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCATATGTGGATGTTGACGGGGAATACGTAGAGGAAGGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAGGTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACCGACCAACATTTTCGCCAAATTGTTCGCCAGATGAACTTCAATTGTACAATCAAAGACATATTTTTACTCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTCAGTTTTGCCATATAAAATGGTATACAGGGAGCATGTCACACATTTTCCTTCAAAAAAAAAAAAAAA]
[-] EMBL CF305219 [AAGGTCTACGCAAAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCATATGTGGATGTTGACGGGGAATACGTAGAGGAAGGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAGGTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACCGACCAACATTTTCGCCAAATTGTTCGCCAGATGAACTTCAATTGTACAATCAAAGACATATTTTTACTCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTCAGTTTTGCCATATAAAATGGTATACAGGGAGCATGTCACACATTTTCCTTCAAAAAAAAAAAAAAA]
consensusID : consensus_13675#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 169 fasta sequence
[ATATTTTTACTCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTCAGTTTTGCCATATAAAATGGTATACAGGGAGCATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAA]
[+] EMBL AU094213 [ATATTTTTACTCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTCAGTTTTGCCATATAAAATGGTATACAGGGAGCATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13675#0 AGTAGAAAAGTTTTTACCTGAGGAGAATCAATCACCGATCTGCAGACTGCAGCCATGGCC 60
consensus_13675#1 ------------------------------------------------------------
consensus_13675#2 ------------------------------------------------------------
consensus_13675#0 ATGAGGGCAATCACGCTGTCCCACTCGCAGAGCGCCTCGTTTGGGCACCACCACCACCAA 120
consensus_13675#1 ------------------------------------------------------------
consensus_13675#2 ------------------------------------------------------------
consensus_13675#0 ACCATGCCGTCCTCCTTCAGGCCAAGCACTGCCTCCACCAGATCAGTGAAGGTCTACGCA 180
consensus_13675#1 ------------------------------------------------AAGGTCTACGCA 12
consensus_13675#2 ------------------------------------------------------------
consensus_13675#0 AAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTG 240
consensus_13675#1 AAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTG 72
consensus_13675#2 ------------------------------------------------------------
consensus_13675#0 GACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCC 300
consensus_13675#1 GACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCC 132
consensus_13675#2 ------------------------------------------------------------
consensus_13675#0 ACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGT 360
consensus_13675#1 ACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGT 192
consensus_13675#2 ------------------------------------------------------------
consensus_13675#0 GGCACCTACAAGGATTTCTTCAAGTCATATGTGGATGTTGACGGGGAATACGTAGAGGAA 420
consensus_13675#1 GGCACCTACAAGGATTTCTTCAAGTCATATGTGGATGTTGACGGGGAATACGTAGAGGAA 252
consensus_13675#2 ------------------------------------------------------------
consensus_13675#0 GGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAG 480
consensus_13675#1 GGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAG 312
consensus_13675#2 ------------------------------------------------------------
consensus_13675#0 GTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACCGACCAAC 540
consensus_13675#1 GTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACCGACCAAC 372
consensus_13675#2 ------------------------------------------------------------
consensus_13675#0 ATCTTCGCCAAATTGTTCGCCAGATGAACTTCAATTGTACAATCAAAGACATATTTTTAC 600
consensus_13675#1 ATTTTCGCCAAATTGTTCGCCAGATGAACTTCAATTGTACAATCAAAGACATATTTTTAC 432
consensus_13675#2 --------------------------------------------------ATATTTTTAC 10
**********
consensus_13675#0 TCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTC 660
consensus_13675#1 TCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTC 492
consensus_13675#2 TCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTC 70
************************************************************
consensus_13675#0 AGTTTTGCCATATAAAATGGTATAAAAAAAAAAAAAAA-ACACTGTCA------------ 707
consensus_13675#1 AGTTTTGCCATATAAAATGGTATACAGGGAGCATGTCACACATTTTCCTTCAAAAAAAAA 552
consensus_13675#2 AGTTTTGCCATATAAAATGGTATACAGGGAGCATGTCAAAAAAAAAAAAAAAAAAAAAAA 130
************************ * * * * * *
consensus_13675#0 ---------------------------------------
consensus_13675#1 AAAAAA--------------------------------- 558
consensus_13675#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAA 169
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||