These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13675#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 707 fasta sequence [AGTAGAAAAGTTTTTACCTGAGGAGAATCAATCACCGATCTGCAGACTGCAGCCATGGCCATGAGGGCAATCACGCTGTCCCACTCGCAGAGCGCCTCGTTTGGGCACCACCACCACCAAACCATGCCGTCCTCCTTCAGGCCAAGCACTGCCTCCACCAGATCAGTGAAGGTCTACGCAAAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCA-TATGTGGATGTTGACGGGGAATACGTAGAGGAA-GGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAGGTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACCGACCAACATCTTCGCCAAATTGTTCGCCAGATGAACTTCAATTGTACAATCAAAGACATATTTTTACTCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTCAGTTTTGCCATATAAAATGGTATAAA---AAAAAAAAAAAAACACTGTCA] [+] EMBL CF305184 [AGTAGAAAAGTTTTTACCTGAGGAGAATCAATCACCGATCTGCAGACTGCAGCCATGGCCATGAGGGCAATCACGCTGTCCCACTCGCAGAGCGCCTCGTTTGGGCACCACCACCACCAAACCATGCCGTCCTCCTTCAGGCCAAGCACTGCCTCCACCAGATCAGTGAAGGTCTACGCAAAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCA TATGTGGATGTTGACGGGGAATACGTAGAGGAA GGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAGGTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACCGACCAACATCTTCGCCAAATTGTTCGCCAGATGAACTTCAATTGTACAATCAAAGACATATTTTTACTCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAA ] [+] EMBL OSS10396A [ GTTTCTACCTGAGGAGAATCAATCACCGATCTGCAGACTGCAGCCATGGCCATGAGGGCAATCACGCTGTCCCACTCGCAGAGCGNCTCGTTTGGGCACCACCACCACCAAACCATGCCGTCCTCCTTCAGGCCAAGCACTGNCTCCACCAGATCAGTGAAGNTCTACGCAAAGGAAGATGAGGAGAAGGGCAGCAAGCAG ] [+] EMBL CF295923 [ ACCTGAGGAGAATCAATCACCGATCTGCAGACTGCAGCCATGGCCATGAGGGCAATCACGCTGTCCCACTCGCAGAGCGCCTCGTTTGGGCACCACCACCACCACACCATGCCGTCCTCCTTCAGGCCAAGCACTGCCTCCACCAGATCAGTGAAGGTCTACGCAAAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCA TATGTGGATGTTGACGGGGAATACGTAGAGGAA GGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAGGTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACTGACCAACATCTTCGC ] [+] EMBL CF305493 [ CTGAGGAGAATCAATCACCGATCTGCAGACTGCAGCCATGGCCATGAGGGCAATCACGCTGTCCCACTCGCAGAGCGCCTCGTTTGGGCACCACCACCACCAAACCATGCCGTCCTCCTTCAGGCCAAGCACTGCCTCCACCAGATCAGTGAAGGTCTACGCAAAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCA TATGTGGATGTTGACGGGGAATACGTAGAGGAAGGGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAGGTCGACAAGCTAGGAAGATATGCACATGTC ] [+] EMBL CF294208 [ TCAATCACCGATCTGCAGACTGCAGCCATGGCCATGAGGGCAATCACGCTGTCCCACTCGCAGAGCGCCTCGTTTGGGCACCACCACCACCAAACCATGCCGTCCTCCTTCAGGCCAAGCACTGCCTCCACCAGATCAGTGAAGGTCTACGCAAAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCA TATGT ] [+] EMBL CF297764 [ TCAATCACCGATCTGCAGACTGCAGCCATGGCCATGAGGGCAATCACGCTGTCCCACTCGCAGAGCGCCTCGTTTGGGCACCACCACCACCAAACCATGCCGTCCTCCTTCAGGCCAAGCACTGCCTCCACCAGATCAGTGAAGGTCTACGCAAAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCATTATGTGGATGTTGACAGGGAATACGTAGAGGAA GGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCATGCAGGTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAA ] [-] EMBL CF294207 [ CACTGCCTCCACCAGATCAGTGAAGGTCTACGCAAAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCA TATGTGGATGTTGACGGGGAATACGTAGAGGAA GGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAGGTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACCGACCAACATTTTCGCCAAATTGTTCGCCAGATGAACTTCAATTGTACAATCAAAGACATATTTTTACTCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTCAGTTTTGCCATATAAAATGGTATACAGGGAGCAAAAAAAA ] [-] EMBL CF297765 [ TGAAGGTCTACGCAAAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCA TATGTGGATGTTGACAGGGAATACGTAGAGGAA GGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAGGTCGACTAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACCGACCAACATCTTCGCCAAATTGTTCGCCAGATGAACTTCAATTGTACAATCAAAGACATATTTTTACTCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTCAGTTTTGCCATATAAAATGGTAAAAA AAAA ] [-] EMBL CF295924 [ GGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCA TATGTGGATGTTGACGGGGAATACGTAGAGGAA GGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAGGTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACTGACCAACATCTTCGCCAAATTGTTCGCCAGATGAACTTCAATTGTACAATCAAAGACATATTTTTACTCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTCAGTTTAGCCATATAAAATGGTATAAA AAAAAAAAAAAAACACTGTCA] [+] EMBL AU057865 [ AGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCA TATGTGGATGTTGACGGGGAATACGTAGAGGAA GGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAGGTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACCGACCAACATCTTCGCCAAATTGTTCGCCAGATGAACTTCAATTGTACAATCAAAGACATATTTTTACTCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTCAGTTTTGCCATATAAAATGGTAAAAA AAAAAAA ] [+] EMBL AA751952 [ annaGGGAATACGTGCCNGAA GGTAAGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCANGTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACCGACCAACATCTTCGCCAAATTGTTCGCCAGATGAACTTCAATTGTACAATCAAAGACATATTTTTACTCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTCAGTTTTGCCATAAAAAAaaa ] consensusID : consensus_13675#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence [AAGGTCTACGCAAAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCATATGTGGATGTTGACGGGGAATACGTAGAGGAAGGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAGGTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACCGACCAACATTTTCGCCAAATTGTTCGCCAGATGAACTTCAATTGTACAATCAAAGACATATTTTTACTCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTCAGTTTTGCCATATAAAATGGTATACAGGGAGCATGTCACACATTTTCCTTCAAAAAAAAAAAAAAA] [-] EMBL CF305219 [AAGGTCTACGCAAAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCCACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCATATGTGGATGTTGACGGGGAATACGTAGAGGAAGGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAGGTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACCGACCAACATTTTCGCCAAATTGTTCGCCAGATGAACTTCAATTGTACAATCAAAGACATATTTTTACTCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTCAGTTTTGCCATATAAAATGGTATACAGGGAGCATGTCACACATTTTCCTTCAAAAAAAAAAAAAAA] consensusID : consensus_13675#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 169 fasta sequence [ATATTTTTACTCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTCAGTTTTGCCATATAAAATGGTATACAGGGAGCATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAA] [+] EMBL AU094213 [ATATTTTTACTCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTCAGTTTTGCCATATAAAATGGTATACAGGGAGCATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13675#0 AGTAGAAAAGTTTTTACCTGAGGAGAATCAATCACCGATCTGCAGACTGCAGCCATGGCC 60 consensus_13675#1 ------------------------------------------------------------ consensus_13675#2 ------------------------------------------------------------ consensus_13675#0 ATGAGGGCAATCACGCTGTCCCACTCGCAGAGCGCCTCGTTTGGGCACCACCACCACCAA 120 consensus_13675#1 ------------------------------------------------------------ consensus_13675#2 ------------------------------------------------------------ consensus_13675#0 ACCATGCCGTCCTCCTTCAGGCCAAGCACTGCCTCCACCAGATCAGTGAAGGTCTACGCA 180 consensus_13675#1 ------------------------------------------------AAGGTCTACGCA 12 consensus_13675#2 ------------------------------------------------------------ consensus_13675#0 AAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTG 240 consensus_13675#1 AAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGCGCTG 72 consensus_13675#2 ------------------------------------------------------------ consensus_13675#0 GACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCC 300 consensus_13675#1 GACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCC 132 consensus_13675#2 ------------------------------------------------------------ consensus_13675#0 ACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGT 360 consensus_13675#1 ACAAAGGATGGAGGAAGGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGT 192 consensus_13675#2 ------------------------------------------------------------ consensus_13675#0 GGCACCTACAAGGATTTCTTCAAGTCATATGTGGATGTTGACGGGGAATACGTAGAGGAA 420 consensus_13675#1 GGCACCTACAAGGATTTCTTCAAGTCATATGTGGATGTTGACGGGGAATACGTAGAGGAA 252 consensus_13675#2 ------------------------------------------------------------ consensus_13675#0 GGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAG 480 consensus_13675#1 GGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAG 312 consensus_13675#2 ------------------------------------------------------------ consensus_13675#0 GTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACCGACCAAC 540 consensus_13675#1 GTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACCGACCAAC 372 consensus_13675#2 ------------------------------------------------------------ consensus_13675#0 ATCTTCGCCAAATTGTTCGCCAGATGAACTTCAATTGTACAATCAAAGACATATTTTTAC 600 consensus_13675#1 ATTTTCGCCAAATTGTTCGCCAGATGAACTTCAATTGTACAATCAAAGACATATTTTTAC 432 consensus_13675#2 --------------------------------------------------ATATTTTTAC 10 ********** consensus_13675#0 TCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTC 660 consensus_13675#1 TCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTC 492 consensus_13675#2 TCATGCTTAGATACATAGATGGTGTTGTAGCCCCAAGAATTTGAACAATATTATGTGTTC 70 ************************************************************ consensus_13675#0 AGTTTTGCCATATAAAATGGTATAAAAAAAAAAAAAAA-ACACTGTCA------------ 707 consensus_13675#1 AGTTTTGCCATATAAAATGGTATACAGGGAGCATGTCACACATTTTCCTTCAAAAAAAAA 552 consensus_13675#2 AGTTTTGCCATATAAAATGGTATACAGGGAGCATGTCAAAAAAAAAAAAAAAAAAAAAAA 130 ************************ * * * * * * consensus_13675#0 --------------------------------------- consensus_13675#1 AAAAAA--------------------------------- 558 consensus_13675#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAA 169 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||