These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1369#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1407 fasta sequence [ATCACCAGCACACACACTGTCACACACAAAGAAAGAAAAGGAGCTAGCAATGGCAGCACTCGCCGCCGTCGCCGTTCTCGTCGTCGCCATGGTTATCAGTGGCGGTGGCGGCGTCGCCGCGGCGGTGACATCCAAGAAGCCAGTGATCTACATCTTCGGCGACTCGATGTCCGACGTCGGGAACAACAACTACCTCATCCTCTCGCTCGCGAAGTCCGATTACCCCTGGTACGGCGTCGACTACGAGACCGGATTCCCCACCGGGCGGTTCACCAATGGCAGGACCATCGGGGACATCATGGCCGCCAAGTTTGGCGTCCCGCCGCCGCCGCCGTTCCTGTCGTTGTACATGACCGACGACGAGGTGCTCGGCGGCGTCAACTTCGCGTCCGGCGGCGCCGGCCTCCTCAACGAGACCGGCATTTACTTCGTTCAGTACCTGTCGTTCGACAACCAGATATCGTCGTTCGAGGAGATCAAGAACGCCATGATCGCCAAGATTGGCAAGAAGGCCGCAGAGGAGGTAGTCAATGGCGCCATCTTCCAAGTCGGCCTTGGGAGCAACGACTACATCAACAACTTCTTGCGGCCGTTCATGGCGGACGGCATCGTGTACACCCACGAAGAGTTCATCGGCCTCCTCATGGACACCATGGACAGGCAGCTCACAAGGCTGTACGATCTCGGGGCGCGCAACGTGTGGTTCAGCGGGCTCGCCCCGCTCGGCTGCATCCCGTCGCAGCGCGTCCTCTCCGACGACGGCGGGTGCCTGGACGACGTGAACGCGTACGCGGTGCAGTTCAACGCCGCCGCCAGGAACCTCCTCGAGCGGCTCAACGCGAAGCTCCCCGGCGCGAGCATGTCCCTCGCCGACTGCTACTCCGTCGTCATGGAGCTCATCGAGCACCCGCAGAAGTACGGGTTCAAGACGTCGCACACGTCGTGCTGCGACGTGGACACGACGGTGGGCGGGCTGTGCCTGCCGACGGCGCAGCTCTGCGACGACCGCACGGCGTTCGTGTTCTGGGACGCCTACCACACCTCCGACGCTGCCAACCAGGTCATCGCCGACCGCCTCTACGCCGACATGGTGAGCGCCGGCGCCGTACAGGGGAACGGGAACGCCACCACCGCCGCCGCCGCCTCCACCCCCGCGCCTCGCGTCGTCGTGGGCGGCGGCGCGTCGCCGTCGACCCACGCCGCGCCGCCTCCAAAGCCTTAGACGTGCAGACAACAGATCGATCGGCCGCCGTTGCGCCGGCACAACGCCGTCGCCTTTTCGTGTGATTCGAGCCCCAGTCATATCTGATCTCCATTGTCGGATGAGTTAAACAACAAGTGTTTGATGAAATGATGAGTAGTGTCGCGATTGTTCAACCAACGTTTTCCGAGTCAAAATCATGCATG] [+] EMBL AK108686 [ATCACCAGCACACACACTGTCACACACAAAGAAAGAAAAGGAGCTAGCAATGGCAGCACTCGCCGCCGTCGCCGTTCTCGTCGTCGCCATGGTTATCAGTGGCGGTGGCGGCGTCGCCGCGGCGGTGACATCCAAGAAGCCAGTGATCTACATCTTCGGCGACTCGATGTCCGACGTCGGGAACAACAACTACCTCATCCTCTCGCTCGCGAAGTCCGATTACCCCTGGTACGGCGTCGACTACGAGACCGGATTCCCCACCGGGCGGTTCACCAATGGCAGGACCATCGGGGACATCATGGCCGCCAAGTTTGGCGTCCCGCCGCCGCCGCCGTTCCTGTCGTTGTACATGACCGACGACGAGGTGCTCGGCGGCGTCAACTTCGCGTCCGGCGGCGCCGGCCTCCTCAACGAGACCGGCATTTACTTCGTTCAGTACCTGTCGTTCGACAACCAGATATCGTCGTTCGAGGAGATCAAGAACGCCATGATCGCCAAGATTGGCAAGAAGGCCGCAGAGGAGGTAGTCAATGGCGCCATCTTCCAAGTCGGCCTTGGGAGCAACGACTACATCAACAACTTCTTGCGGCCGTTCATGGCGGACGGCATCGTGTACACCCACGAAGAGTTCATCGGCCTCCTCATGGACACCATGGACAGGCAGCTCACAAGGCTGTACGATCTCGGGGCGCGCAACGTGTGGTTCAGCGGGCTCGCCCCGCTCGGCTGCATCCCGTCGCAGCGCGTCCTCTCCGACGACGGCGGGTGCCTGGACGACGTGAACGCGTACGCGGTGCAGTTCAACGCCGCCGCCAGGAACCTCCTCGAGCGGCTCAACGCGAAGCTCCCCGGCGCGAGCATGTCCCTCGCCGACTGCTACTCCGTCGTCATGGAGCTCATCGAGCACCCGCAGAAGTACGGGTTCAAGACGTCGCACACGTCGTGCTGCGACGTGGACACGACGGTGGGCGGGCTGTGCCTGCCGACGGCGCAGCTCTGCGACGACCGCACGGCGTTCGTGTTCTGGGACGCCTACCACACCTCCGACGCTGCCAACCAGGTCATCGCCGACCGCCTCTACGCCGACATGGTGAGCGCCGGCGCCGTACAGGGGAACGGGAACGCCACCACCGCCGCCGCCGCCTCCACCCCCGCGCCTCGCGTCGTCGTGGGCGGCGGCGCGTCGCCGTCGACCCACGCCGCGCCGCCTCCAAAGCCTTAGACGTGCAGACAACAGATCGATCGGCCGCCGTTGCGCCGGCACAACGCCGTCGCCTTTTCGTGTGATTCGAGCCCCAGTCATATCTGATCTCCATTGTCGGATGAGTTAAACAACAAGTGTTTGATGAAATGATGAGTAGTGTCGCGATTGTTCAACCAACGTTTTCCGAGTCAAAATCATGCATG] consensusID : consensus_1369#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [GAAGAACTTCTTGCACTTTGCCATGTACTGACTTGACCTCACCACCGTGACTCACATGCAAGCTAGCTAATAGAAAATAAAATGCTGAGCACAAAGACTTAATCCAACATCGCACACGTCGTGTTGTGACGTGGACACGACGGTGGGCGGGCTGTGCCTGCCGATGGCGCAGCTCTGCGACGACCGCACGACGTTCGTGTTCTGGGACGCCTACCACACCTCCGACGCCACCAACCAGGTCATCGCCGACCGCCTCTACGCCGACATGGTGAGCGCTGGCGCGGTGCAGGGGAACGGGAACGTCACCACCGCCTCCAAAGCCTTGAAGTACAGACAACAGATCAATCGGCCGCTGTGCGCCGGCACAACGCCGTCGCCTATTCGGTACGACGGCGACGAGTAGGAGCGTGGCTGCGTGGTCTGGGCATGGACGTCCGAGGAGAGGAATTGGCGTCGCCGCCCCACCCGCAGCAGCCGCGTCGTCGGTTGATGAGGAGGAGGTCGGAGAGCACCTTCCGTCTCCGCCTCCACCACCGGCTGCCCGGGCGAACTCCGCCTCCCGCTACTGGCCGCCCGCCGCCCTCCGCCGCTCCCGTCCTCGCGAGGCGGCGCCATGCCGGTGAGGAGA] [-] EMBL AK062747 [GAAGAACTTCTTGCACTTTGCCATGTACTGACTTGACCTCACCACCGTGACTCACATGCAAGCTAGCTAATAGAAAATAAAATGCTGAGCACAAAGACTTAATCCAACATCGCACACGTCGTGTTGTGACGTGGACACGACGGTGGGCGGGCTGTGCCTGCCGATGGCGCAGCTCTGCGACGACCGCACGACGTTCGTGTTCTGGGACGCCTACCACACCTCCGACGCCACCAACCAGGTCATCGCCGACCGCCTCTACGCCGACATGGTGAGCGCTGGCGCGGTGCAGGGGAACGGGAACGTCACCACCGCCTCCAAAGCCTTGAAGTACAGACAACAGATCAATCGGCCGCTGTGCGCCGGCACAACGCCGTCGCCTATTCGGTACGACGGCGACGAGTAGGAGCGTGGCTGCGTGGTCTGGGCATGGACGTCCGAGGAGAGGAATTGGCGTCGCCGCCCCACCCGCAGCAGCCGCGTCGTCGGTTGATGAGGAGGAGGTCGGAGAGCACCTTCCGTCTCCGCCTCCACCACCGGCTGCCCGGGCGAACTCCGCCTCCCGCTACTGGCCGCCCGCCGCCCTCCGCCGCTCCCGTCCTCGCGAGGCGGCGCCATGCCGGTGAGGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1369#0 ATCACCAGCACACACACTGTCACACACAAAGAAAGAAAAGGAGCTAGCAATGGCAGCACT 60 consensus_1369#1 ------------------------------------------------------------ consensus_1369#0 CGCCGCCGTCGCCGTTCTCGTCGTCGCCATGGTTATCAGTGGCGGTGGCGGCGTCGCCGC 120 consensus_1369#1 ------------------------------------------------------------ consensus_1369#0 GGCGGTGACATCCAAGAAGCCAGTGATCTACATCTTCGGCGACTCGATGTCCGACGTCGG 180 consensus_1369#1 ------------------------------------------------------------ consensus_1369#0 GAACAACAACTACCTCATCCTCTCGCTCGCGAAGTCCGATTACCCCTGGTACGGCGTCGA 240 consensus_1369#1 ------------------------------------------------------------ consensus_1369#0 CTACGAGACCGGATTCCCCACCGGGCGGTTCACCAATGGCAGGACCATCGGGGACATCAT 300 consensus_1369#1 ------------------------------------------------------------ consensus_1369#0 GGCCGCCAAGTTTGGCGTCCCGCCGCCGCCGCCGTTCCTGTCGTTGTACATGACCGACGA 360 consensus_1369#1 ------------------------------------------------------------ consensus_1369#0 CGAGGTGCTCGGCGGCGTCAACTTCGCGTCCGGCGGCGCCGGCCTCCTCAACGAGACCGG 420 consensus_1369#1 ------------------------------------------------------------ consensus_1369#0 CATTTACTTCGTTCAGTACCTGTCGTTCGACAACCAGATATCGTCGTTCGAGGAGATCAA 480 consensus_1369#1 ------------------------------------------------------------ consensus_1369#0 GAACGCCATGATCGCCAAGATTGGCAAGAAGGCCGCAGAGGAGGTAGTCAATGGCGCCAT 540 consensus_1369#1 ------------------------------------------------------------ consensus_1369#0 CTTCCAAGTCGGCCTTGGGAGCAACGACTACATCAACAACTTCTTGCGGCCGTTCATGGC 600 consensus_1369#1 ------------------------------------------------------------ consensus_1369#0 GGACGGCATCGTGTACACCCACGAAGAGTTCATCGGCCTCCTCATGGACACCATGGACAG 660 consensus_1369#1 ------------------------------------------------------------ consensus_1369#0 GCAGCTCACAAGGCTGTACGATCTCGGGGCGCGCAACGTGTGGTTCAGCGGGCTCGCCCC 720 consensus_1369#1 ------------------------------------------------------------ consensus_1369#0 GCTCGGCTGCATCCCGTCGCAGCGCGTCCTCTCCGACGACGGCGGGTGCCTGGACGACGT 780 consensus_1369#1 ------------------------------------------------------------ consensus_1369#0 GAACGCGTACGCGGTGCAGTTCAACGCCGCCGCCAGGAACCTCCTCGAGCGGCTCAACGC 840 consensus_1369#1 ---------------------------------GAAGAACTTCTT---GCACTTTGCCAT 24 * **** ** * ** * * consensus_1369#0 GAAGCTCCCCGGCGCGAGCAT-GTCCCTCGCCGACT-GCTACTCCGTCGTCATGGAGCTC 898 consensus_1369#1 GTACTGACTTGACCTCACCACCGTGACTCACATGCAAGCTAGCTAATAGAAAATAAAAT- 83 * * * * * * ** ** *** * * **** * * * * * consensus_1369#0 ATCGAGCACCCGCAGAAGTACGGGTTCAAGACGTCGCACACGTCGTGCTGCGACGTGGAC 958 consensus_1369#1 GCTGAGCAC-----AAAGACTTAATCCA--ACATCGCACACGTCGTGTTGTGACGTGGAC 136 ****** *** * ** ** ************** ** ********* consensus_1369#0 ACGACGGTGGGCGGGCTGTGCCTGCCGACGGCGCAGCTCTGCGACGACCGCACGGCGTTC 1018 consensus_1369#1 ACGACGGTGGGCGGGCTGTGCCTGCCGATGGCGCAGCTCTGCGACGACCGCACGACGTTC 196 **************************** ************************* ***** consensus_1369#0 GTGTTCTGGGACGCCTACCACACCTCCGACGCTGCCAACCAGGTCATCGCCGACCGCCTC 1078 consensus_1369#1 GTGTTCTGGGACGCCTACCACACCTCCGACGCCACCAACCAGGTCATCGCCGACCGCCTC 256 ******************************** ************************** consensus_1369#0 TACGCCGACATGGTGAGCGCCGGCGCCGTACAGGGGAACGGGAACGCCACCACCGCCGCC 1138 consensus_1369#1 TACGCCGACATGGTGAGCGCTGGCGCGGTGCAGGGGAACGGGAACGTCACCACCGCCTCC 316 ******************** ***** ** **************** ********** ** consensus_1369#0 GCCGCCTCCACCCCCGCGCCTCGCGTCG-TCG-----TGGGCGGCGGCGCGTCGCCGTCG 1192 consensus_1369#1 AAAGCCTTGAAGTACAGACAACAGATCAATCGGCCGCTGTGCGCCGGCACAACGCCGTCG 376 **** * * * * ** *** ** *** **** * ******** consensus_1369#0 ACC-CACGCCGCGCCGCCTCCAAA-----------------GCCTTAGACGTGCAGAC-- 1232 consensus_1369#1 CCTATTCGGTACGACGGCGACGAGTAGGAGCGTGGCTGCGTGGTCTGGGCATGGACGTCC 436 * ** ** ** * * * * * * * ** * consensus_1369#0 -AACAGATCGATCGGC--CGCCGTTGCGCCGGCA-CAACGCCGTCGCCTTTTCGTGTGAT 1288 consensus_1369#1 GAGGAGAGGAATTGGCGTCGCCGCCCCACCCGCAGCAGCCGCGTCGTCGGTTGATGAGGA 496 * *** ** *** ***** * ** *** ** * ***** * ** ** * consensus_1369#0 TCGAGCCCCAGT-CATATCTGATCTCCATTGTCGG-ATGAGTTAAACAA-CAAGTGTTTG 1345 consensus_1369#1 GGAGGTCGGAGAGCACCTTCCGTCTCCGCCTCCACCACCGGCTGCCCGGGCGAACTCCGC 556 * * ** ** * ***** * * * * * * * consensus_1369#0 ATGAAATGATGAGTAGTGTCGCGATTGTTCA--ACCAACGTTTTC-CGAGTCAAAATCAT 1402 consensus_1369#1 CTCCCGCTACTGGCCGC-CCGCCGCCCTCCGCCGCTCCCGTCCTCGCGAGGCGGCGCCAT 615 * * * * *** * * * *** ** **** * *** consensus_1369#0 GCATG-------- 1407 consensus_1369#1 GCCGGTGAGGAGA 628 ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||