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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13694#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1902 fasta sequence
[TCCCGAGCTCTCACCGAGAGACCCAAAACCCTTTCCACCGATGGCCACCGCCGTAGCCGCCGCCGGCGGTGGCGGCGGCGGCGAGCAGCCGCGCAGGAGGAAGCCGGCGCCGGGGAGAGGGGGAGTGGTGCTCCCCGCGGGGCTGTCGGAGGAGGAGGCGCGGGTGCGGGCCATCGCGGAGATCGTGTCGGCGATGGGGGAGCTCTCGCGGCGAGGGGAGGACGTGGACCTGAACGCGCTCAAGTCGGCCGCGTGCCGGAGGTACGGGCTGGCGCGGGCGCCGAAGCTGGTGGAGATGATCGCGGCGGTGCCGGAGGCCGACCGCGCCGCGCTGCTCCCAAGGCTGCGCGCCAAGCCCGTGCGCACGGCGTCGGGCATTGCCGTGGTCGCCGTGATGTCGAAGCCGCACCGGTGCCCCCACATCGCCACCACGGGGAACATCTGCGTGTACTGCCCCGGAGGCCCCGACTCCGACTTCGAGTACAGCACCCAGTCCTACACCGGCTACGAGCCCACCAGCATGCGCGCCATTCGAGCAAGGTACAATCCATATGTGCAGGCCAGAAGCAGGATAGATCAGCTCAAAAGGCTAGGCCATAGTGTAGACAAGGTCGAATTCATATTGATGGGTGGAACTTTCATGTCATTACCAGCTGATTATCGGGATTATTTCATTAGAAATCTTCATGATGCCTTATCGGGACACACTTCTGCTAATGTTGAAGAGGCTGTTTGTTATTCAGAACATGGTGCAGTCAAATGTATTGGCATGACAATTGAGACGAGACCTGATTATTGCTTGGGGCCTCATTTGCGCCAGATGCTATCTTATGGTTGTACCCGCTTAGAAATTGGTGTTCAGAGCACATACGAGGATGTTGCACGTGACACAAACAGAGGTCACACTGTAGCTGCTGTTGCTGATTGCTTTTGTTTGGCTAAAGATGCTGGTTTTAAGGTGGTCGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGATCTGGAAAGTTTCCGAGAATTTTTTGAAAATCCAGCATTCCGAGCTGATGGTCTAAAGATTTATCCAACTCTTGTGATTCGTGGAACTGGCCTTTATGAGCTCTGGAAAACTGGCAGATACCGAAACTATCCACCTGAACTTCTGGTGGATATTGTTGCAAGAATTCTATCCATGGTACCACCTTGGACACGAGTTTACCGTGTACAAAGAGATATCCCTATGCCTCTTGTTACTTCTGGTGTTGAAAAAGGTAATCTTCGTGAGCTTGCTTTGGCTCGAATGGAAGATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACTATGCTGCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGATACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTGGCCGCAATGTTACATGCCCTGAGCTAGTAGGGAGGTGTTC-AATTGTCC-GTGAAC-TTCATGTATATGGAACTGCAGTCC-C-TGTAC-ATGGTCGTGATGC-AGACAAAC-TAC-AACACCAGGGTTATGGTACTCTTTTGATGGAAGAAGC-AGAAAGAATTGCTCGCAAGGAGC-ATCGTTC-AAAGAAAATCGCTGTTATATCAGGAGTTGGGACTC-GCCACTACTACCGTAAACTGGGTTATGAACTTGAGGGGCC-TTACATGGTC-AAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCAGC-AGCATTGTCAC-TGTAGTATGGGTTTTGTACACC-A-GT-GTAACTTTTTTTTTATATGAATGAGTAAACACACCTCCTTTCAAAAAATGAGTAAACATAACATTTGATTAC]
[+] EMBL AK122179 [TCCCGAGCTCTCACCGAGAGACCCAAAACCCTTTCCACCGATGGCCACCGCCGTAGCCGCCGCCGGCGGTGGCGGCGGCGGCGAGCAGCCGCGCAGGAGGAAGCCGGCGCCGGGGAGAGGGGGAGTGGTGCTCCCCGCGGGGCTGTCGGAGGAGGAGGCGCGGGTGCGGGCCATCGCGGAGATCGTGTCGGCGATGGGGGAGCTCTCGCGGCGAGGGGAGGACGTGGACCTGAACGCGCTCAAGTCGGCCGCGTGCCGGAGGTACGGGCTGGCGCGGGCGCCGAAGCTGGTGGAGATGATCGCGGCGGTGCCGGAGGCCGACCGCGCCGCGCTGCTCCCAAGGCTGCGCGCCAAGCCCGTGCGCACGGCGTCGGGCATTGCCGTGGTCGCCGTGATGTCGAAGCCGCACCGGTGCCCCCACATCGCCACCACGGGGAACATCTGCGTGTACTGCCCCGGAGGCCCCGACTCCGACTTCGAGTACAGCACCCAGTCCTACACCGGCTACGAGCCCACCAGCATGCGCGCCATTCGAGCAAGGTACAATCCATATGTGCAGGCCAGAAGCAGGATAGATCAGCTCAAAAGGCTAGGCCATAGTGTAGACAAGGTCGAATTCATATTGATGGGTGGAACTTTCATGTCATTACCAGCTGATTATCGGGATTATTTCATTAGAAATCTTCATGATGCCTTATCGGGACACACTTCTGCTAATGTTGAAGAGGCTGTTTGTTATTCAGAACATGGTGCAGTCAAATGTATTGGCATGACAATTGAGACGAGACCTGATTATTGCTTGGGGCCTCATTTGCGCCAGATGCTATCTTATGGTTGTACCCGCTTAGAAATTGGTGTTCAGAGCACATACGAGGATGTTGCACGTGACACAAACAGAGGTCACACTGTAGCTGCTGTTGCTGATTGCTTTTGTTTGGCTAAAGATGCTGGTTTTAAGGTGGTCGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGATCTGGAAAGTTTCCGAGAATTTTTTGAAAATCCAGCATTCCGAGCTGATGGTCTAAAGATTTATCCAACTCTTGTGATTCGTGGAACTGGCCTTTATGAGCTCTGGAAAACTGGCAGATACCGAAACTATCCACCTGAACTTCTGGTGGATATTGTTGCAAGAATTCTATCCATGGTACCACCTTGGACACGAGTTTACCGTGTACAAAGAGATATCCCTATGCCTCTTGTTACTTCTGGTGTTGAAAAAGGTAATCTTCGTGAGCTTGCTTTGGCTCGAATGGAAGATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACTATGCTGCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGATACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTGGCCGCAATGTTACATGCCCTGAGCTAGTAGGGAGGTGTTC AATTGTCC GTGAAC TTCATGTATATGGAACTGCAGTCC C TGTAC ATGGTCGTGATGC AGACAAAC TAC AACACCAGGGTTATGGTACTCTTTTGATGGAAGAAGC AGAAAGAATTGCTCGCAAGGAGC ATCGTTC AAAGAAAATCGCTGTTATATCAGGAGTTGGGACTC GCCACTACTACCGTAAACTGGGTTATGAACTTGAGGGGCC TTACATGGTC AAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCAGC AGCATTGTCAC TGTAGTATGGGTTTTGTACACC A GT GTAACTTTTTTTTTATATGAATGAGTAAACAC ]
[+] EMBL CB663105 [ CGCCGGCGGTGGCGGCGGCGGCGAGCAGCCGCGCAGGAGGAAGCCGGCGCCGGGGAGAGGGGGAGTGGTGCTCCCCGCGGGGCTGTCGGAGGAGGAGGCGCGGGTGCGGGCCATCGCGGAGATCGTGTCGGCGATGGGGGAGCTCTCGCGGCGAGGGGAGGACGTGGACCTGAACGCGCTCAAGTCGGCCGCGTGCCGGAGGTACGGGCTGGCGCGGGCGCCGAAGCTGGTGGAGATGATCGCGGCGGTGCCGGAGGCCGACCGCGCCGCGCTGCTCCCAAGGCTGCGCGCCAAGCCCGTGCGCACGGCGTCGGGCATTGCCGTGGTCGCCGTGATGTCGAAGCCGCACCGGTGCCCCCACATCGCCACCACGGGGAACATCTGCGTGTACTGCCCCGGAGGCCCCGACTCCGACTTCGAGTACAGCACCCAGTCCTACACCGGCTACGAGCCCACCAGCATGCGCGCCATTCGAGCAAGGTACAATCCATATGTGCAGGCCAGAAGCAGGATAGATCAGCTCAAAAGGCTAGGCCATAGTGTAGACAAGGTCGAATTCATATTGATGGGTGGAACTTTCATGTCATTACCAGCTGATTATCGGGATTATTTCATTAGAAATCTTCATGATGCCTTATCGGGACACACTTCTGCTAATGTTGAAGAGGCTGTTTGTTATTCAGAACATGGTGCAGTCAAATGTATTGGCATGACAATTGAGACGAGACCTGATTATTGCTTGGGGCCTCATTTGCGCCAGAT ]
[+] EMBL CB679215 [ TTTTAAGGTGGTCGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGATCTGGAAAGTTTCCGAGAATTTTTTGAAAATCCAGCATTCCGAGCTGATGGTCTAAAGATTTATCCAACTCTTGTGATTCGTGGAACTGGCCTTTATGAGCTCTGGAAAACTGGCAGATACCGAAACTATCCACCTGAACTTCTGGTGGATATTGTTGCAAGAATTCTATCCATGGTACCACCTTGGACACGAGTTTACCGTGTACAAAGAGATATCCCTATGCCTCTTGTTACTTCTGGTGTTGAAAAAGGTAATCTTCGTGAGCTTGCTTTGGCTCGAATGGAAGATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACTATGCTGCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGATACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTGGCCGCAATGTTACATGCCCTGAGCTAGTAGGGAGGTGTTC AATTGTCC GTGAAC TTCATGTATATGGAACTGCAGTCC C TGTAC ATGGTCGTGATGC AGACAAAC TAC AACACCAGGGTTATGGTACTCTTTTGATGGAAGAAGC AGACAGAATTGCTCGCAAGGAGC ATCGTTC AAAGAAAATCGCTGTTATATCACGAGTTGGGACTC ]
[+] EMBL CA999039 [ AGCATTCCGAGCTGATGGTCTAAAGATTTATCCAACTCTTGTGATTCGTGGAACTGGCCTTTATGAGCTCTGGAAAACTGGCAGATACCGAAACTATCCACCTGAACTTCTGGTGGATATTGTTGCGAGAATTCTATCCATGGTACCACCTTGGACACGAGTTTACCGTGTACAAAGAGATATCCCTATGCCTCTTGTTACTTCTGGTGTTGAAAAAGGTAATCTTCGTGAGCTTGCTTTGGCTCGAATGGAAGATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACTATGCTGCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGATACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTGGCCGCAATGTTACATGCCCTGAGCTAGTAGGGAGGTGTTC AATTGTCC GTGAAC TTCATGTATATGGAACTGCAGTCC C TGTAC ATGGTCGTGATGC AGACAAAC TAC AACACCAGGGTTATGGTACTCTTTTGATGGAAGAAGC AGAAAGAATTGCTCGCAAGGAGC ATCGTTC AAAGAAAATCGCTGTTATATCAGGAGTTGGGACT ]
[+] EMBL CB000679 [ AGCATTCCGAGCTGATGGTCTAAAGATTTATCCAACTCTTGTGATTCGTGGAACTGGCCTTTATGAGCTCTGGAAAACTGGCAGATACCGAAACTATCCACCTGAACTTCTGGTGGATATTGTTGCGAGAATTCTATCCATGGTACCACCTTGGACACGAGTTTACCGTGTACAAAGAGATATCCCTATGCCTCTTGTTACTTCTGGTGTTGAAAAAGGTAATCTTCGTGAGCTTGCTTTGGCTCGAATGGAAGATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACTATGCTGCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGATACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTGGCCGCAATGTTACATGCCCTGAGCTAGTANGGAGGTGTTC AATTGTCC GTGAAC TTCATGTATATGGAACTGCAGTCC C TGTAC ATGGTCGTGATGC AGACAAAC TAC AACACCAGGGTTATGGTACTCTTTTGATGGAAGAAGC AG ]
[-] EMBL CB663106 [ CTCTGGAAAACTGGCAGATACCGAAACTATCCACCTGAACTTCTGGTGGATATTGTTGCAAGAATTCTATCCATGGTACCACCTTGGACACGAGTTTACCGTGTACAAAGAGATATCCCTATGCCTCTTGTTACTTCTGGTGTTGAAAAAGGTAATCTTCGTGAGCTTGCTTTGGCTCGAATGGAAGATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACTATGCTGCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGATACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTGGCCGCAATGTTACATGCCCTGAGCTAGTAGGGAGGTGTTC AATTGTCC GTGAAC TTCATGTATATGGAACTGCAGTCC C TGTAC ATGGTCGTGATGC AGACAAAC TAC AACACCAGGGTTATGGTACTCTTTTGATGGAAGAAGC AGAAAGAATTGCTCGCAAGGAGC ATCGTTC AAAGAAAATCGCTGTTATATCAGGAGTTGGGACTC GCCACTACTACCGTAAACTGGGTTATGAACTTGAGGGGCC TTACATGGTC AAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCAGC AGCATTGTCAC TGTAGTATGGGTTTTGTACACC A GT GTAACTTTTTTTTTATATGAATGAGTAAACACACCTCCTTTCAAAAAATGAGTAAACATAA ]
[-] EMBL CB679216 [ AACTATCCACCTGAACTTCTGGTGGATATTGTTGCAAGAATTCTATCCATGGTACCACCTTGGACACGAGTTTACCGTGTACAAAGAGATATCCCTATGCCTCTTGTTACTTCTGGTGTTGAAAAAGGTAATCTTCGTGAGCTTGCTTTGGCTCGAATGGAAGATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACTATGCTGCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGATACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTGGCCGCAATGTTACATGCCCTGAGCTAGTAGGGAGGTGTTC AATTGTCC GTGAAC TTCATGTATATGGAACTGCAGTCC C TGTAC ATGGTCGTGATGC AGACAAAC TAC AACACCAGGGTTATGGTACTCTTTTGATGGAAGAAGC AGAAAGAATTGCTCGCAAGGAGC ATCGTTC AAAGAAAATCGCTGTTATATCAGGAGTTGGGACTC GCCACTACTACCGTAAACTGGGTTATGAACTTGAGGGGCC TTACATGGTC AAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCAGC AGCATTGTCAC TGTAGTATGGGTTTTGTACACC A GT GTAACTTTTTTTTTATATGAATGAGTAAACACACCTCCTTTCAAAAAATGAGTAAACATAACATTTGATTAC]
[+] EMBL CF331348 [ ggagtagaAATCTT T TGCTTGCTTTGGCTCGAATGGAAGATCTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACTATGCTTCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGATACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTGGCCGCAATGTTACATGCCCTGAGCTAGTAGGGAGGTGTTC AATTGTCC GTGAAC TTCATGTATATGGAACTGCAGTCC C TGTAC ATGGTCGTGATGC AGACAAAC TAC AACACCAGGGTTATGGTACTCTTTTGATGGAAGAAGC AGAAAGAATTGCTCGCAAGGAGC ATCGTTC AAAGAAAATCGCTGTTATATCAGGAGTTGGGACTC GCCACTACTACCGTAAACTGGGTTATGAACTTGAGGGGCC TTACATGGTC AAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCAGC AGCATTGTCAC TGTAGTATGGGTTTTGTA ]
[-] EMBL CF331347 [ TTGGCTCGAATGGAAGATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACTATGCTTCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGATACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTGGCCGCAATGTTACATGCCCTGAGCTAGTAGGGAGGTGTTC AATTGTCC GTGAAC TTCATGTATATGGAACTGCAGTCC C TGTAC ATGGTCGTGATGC AGACAAAC TAC AACACCAGGGTTATGGTACTCTTTTGATGGAAGAAGC AGAAAGAATTGCTCGCAAGGAGC ATCGTTC AAAGAAAATCGCTGTTATATCAGGAGTTGGGACTC GCCACTACTACCGTAAACTGGGTTATGAACTTGAGGGGCC TTACATGGTC AAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCAGC AGCATTGTCAC TGTAGTATGGGTTTTGTACACC ACGT GTAACTTTTTTTTTATATGAATGAGTAAACACACTTCCTTTCAAAAAAaa ]
[+] EMBL BI812464 [ TAGGGAGGTGTTCAAATTGTCCAGTGAACATTCATGTATATGGAACTGCAGTCCACATGTACAATGGTCGTGATGCAAGACAAACGTACAAACACCA GGTTATGGTACTCTTTTGATGGAAGAACCAAGAAAGAATTGCTCGCAAGGAGCAATCGTTCAAAAGAAAATCGCTGTTATATCAGGAGTTGGGACTCAGCCACTACTACCGTAAACTGGGTTATGAACTTGAGGGCCCATTACATGGTCAAAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCAGCAAGCATTGTCACATGTAGTATGGGTTTTGTACACCAA GTGGTAACTTTTTTTTTATATGAATGAGTAAAaaaaaaa ]
consensusID : consensus_13694#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence
[GGGGGGTGGNTATTGTTGNNAGANTTCTATNCATGGTACAACCTTGGACACNAGTTNACCGTGNTCAAAGAGATATCCCTATGCCTNTTGNNACTTCNGGTGNTGANAAAGGTAANCTNNNTGAGCTTGCTTTGCCTCGAANGGAANATTGAGGCTTGAANGGCCGNGATGNTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTANACCTGACNAAGNAGGCGCTTGTTCGGCGAGACTATGCTGCAATATGANGGCTGNNANACCTTTCTCTCATACCAGGATACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTNGCCGTACTGTNACATGCCCTGAGCTANNAGGGAGGCNNTCAATNGCCCGTGAACTTNATGNATACNNAACTGCAGNCNCTGTACATGGTCGTGATGCANACAAACTACAACACCATGGTTATGGTACTNTTTTGATGGTNNACNCANCAANGNATTGCTCGCAAGGAAGCATCGTATCAAAGAAANATCGCTNCCTATATCATNGAGTTGGGACTCAGNCACTACTACCGTAAAACTGNNNNTATGAACCTTGAGGGGCCCTTACATNGGNCAAANTGTCTGGGCTAAAAACTTCTATTNATGGGNGCTTGGNCTTC]
[+] EMBL CA764949 [GGGGGGTGGNTATTGTTGNNAGANTTCTATNCATGGTACAACCTTGGACACNAGTTNACCGTGNTCAAAGAGATATCCCTATGCCTNTTGNNACTTCNGGTGNTGANAAAGGTAANCTNNNTGAGCTTGCTTTGCCTCGAANGGAANATTGAGGCTTGAANGGCCGNGATGNTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTANACCTGACNAAGNAGGCGCTTGTTCGGCGAGACTATGCTGCAATATGANGGCTGNNANACCTTTCTCTCATACCAGGATACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTNGCCGTACTGTNACATGCCCTGAGCTANNAGGGAGGCNNTCAATNGCCCGTGAACTTNATGNATACNNAACTGCAGNCNCTGTACATGGTCGTGATGCANACAAACTACAACACCATGGTTATGGTACTNTTTTGATGGTNNACNCANCAANGNATTGCTCGCAAGGAAGCATCGTATCAAAGAAANATCGCTNCCTATATCATNGAGTTGGGACTCAGNCACTACTACCGTAAAACTGNNNNTATGAACCTTGAGGGGCCCTTACATNGGNCAAANTGTCTGGGCTAAAAACTTCTATTNATGGGNGCTTGGNCTTC]
consensusID : consensus_13694#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence
[CTGGGAGACCTTTCTCTCATACCGAGGATACCCACCCAGGATATCGCGATTCCGAAAATGTGCCCCAATGGTTACATGCCCCTGAGCTAGTAGGGAGTTGTTCAATTGTCCGTGAACTTCATGTATATGGAACTCCAGTCCCTGTACATGTCGTGATCGCAGACCAAACTACAACACCAGGGTTATGGTACTCTTTTGATGGAAGAACGCAGAAAGAATTGCTCGCAAGGAGCATCGTTCAAAGAAAATCGCTGTTATATCAGGAGTTGGGACTCGCCACTACTACCGTAAACTGGGTTATGAACTTGAGGGCCTTACATGGTCAAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCACAGCATTGTCACTGTAGTATGGGTTTTGTACACCAGTGTAACTTTTTTTTTATATGAATGAGTAAACACCCCTCCTTTCAAAAAATGAGTAAAAAAAAA]
[+] EMBL BI812991 [CTGGGAGACCTTTCTCTCATACCGAGGATACCCACCCAGGATATCGCGATTCCGAAAATGTGCCCCAATGGTTACATGCCCCTGAGCTAGTAGGGAGTTGTTCAATTGTCCGTGAACTTCATGTATATGGAACTCCAGTCCCTGTACATGTCGTGATCGCAGACCAAACTACAACACCAGGGTTATGGTACTCTTTTGATGGAAGAACGCAGAAAGAATTGCTCGCAAGGAGCATCGTTCAAAGAAAATCGCTGTTATATCAGGAGTTGGGACTCGCCACTACTACCGTAAACTGGGTTATGAACTTGAGGGCCTTACATGGTCAAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCACAGCATTGTCACTGTAGTATGGGTTTTGTACACCAGTGTAACTTTTTTTTTATATGAATGAGTAAACACCCCTCCTTTCAAAAAATGAGTAAAAAAAAA]
consensusID : consensus_13694#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 222 fasta sequence
[AGGACGAGACAAGGGGGGGTTATGAACTTGAGGGGCCTTACATGGTCAAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCAGCAGCATTGTCACTGTAGTATGGGTTTTGTACACCAAGTGTAACTTTTTTTTTATATGAATGAGTAAACACACCTCCTTTCAAAAAATGAGTAAACATAACATTTGATTACATACATCTCAAAAAAAAAA]
[-] EMBL CA762714 [AGGACGAGACAAGGGGGGGTTATGAACTTGAGGGGCCTTACATGGTCAAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCAGCAGCATTGTCACTGTAGTATGGGTTTTGTACACCAAGTGTAACTTTTTTTTTATATGAATGAGTAAACACACCTCCTTTCAAAAAATGAGTAAACATAACATTTGATTACATACATCTCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 TCCCGAGCTCTCACCGAGAGACCCAAAACCCTTTCCACCGATGGCCACCGCCGTAGCCGC 60
consensus_13694#1 ------------------------------------------------------------
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 CGCCGGCGGTGGCGGCGGCGGCGAGCAGCCGCGCAGGAGGAAGCCGGCGCCGGGGAGAGG 120
consensus_13694#1 ------------------------------------------------------------
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 GGGAGTGGTGCTCCCCGCGGGGCTGTCGGAGGAGGAGGCGCGGGTGCGGGCCATCGCGGA 180
consensus_13694#1 ------------------------------------------------------------
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 GATCGTGTCGGCGATGGGGGAGCTCTCGCGGCGAGGGGAGGACGTGGACCTGAACGCGCT 240
consensus_13694#1 ------------------------------------------------------------
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 CAAGTCGGCCGCGTGCCGGAGGTACGGGCTGGCGCGGGCGCCGAAGCTGGTGGAGATGAT 300
consensus_13694#1 ------------------------------------------------------------
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 CGCGGCGGTGCCGGAGGCCGACCGCGCCGCGCTGCTCCCAAGGCTGCGCGCCAAGCCCGT 360
consensus_13694#1 ------------------------------------------------------------
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 GCGCACGGCGTCGGGCATTGCCGTGGTCGCCGTGATGTCGAAGCCGCACCGGTGCCCCCA 420
consensus_13694#1 ------------------------------------------------------------
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 CATCGCCACCACGGGGAACATCTGCGTGTACTGCCCCGGAGGCCCCGACTCCGACTTCGA 480
consensus_13694#1 ------------------------------------------------------------
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 GTACAGCACCCAGTCCTACACCGGCTACGAGCCCACCAGCATGCGCGCCATTCGAGCAAG 540
consensus_13694#1 ------------------------------------------------------------
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 GTACAATCCATATGTGCAGGCCAGAAGCAGGATAGATCAGCTCAAAAGGCTAGGCCATAG 600
consensus_13694#1 ------------------------------------------------------------
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 TGTAGACAAGGTCGAATTCATATTGATGGGTGGAACTTTCATGTCATTACCAGCTGATTA 660
consensus_13694#1 ------------------------------------------------------------
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 TCGGGATTATTTCATTAGAAATCTTCATGATGCCTTATCGGGACACACTTCTGCTAATGT 720
consensus_13694#1 ------------------------------------------------------------
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 TGAAGAGGCTGTTTGTTATTCAGAACATGGTGCAGTCAAATGTATTGGCATGACAATTGA 780
consensus_13694#1 ------------------------------------------------------------
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 GACGAGACCTGATTATTGCTTGGGGCCTCATTTGCGCCAGATGCTATCTTATGGTTGTAC 840
consensus_13694#1 ------------------------------------------------------------
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 CCGCTTAGAAATTGGTGTTCAGAGCACATACGAGGATGTTGCACGTGACACAAACAGAGG 900
consensus_13694#1 ------------------------------------------------------------
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 TCACACTGTAGCTGCTGTTGCTGATTGCTTTTGTTTGGCTAAAGATGCTGGTTTTAAGGT 960
consensus_13694#1 ------------------------------------------------------------
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 GGTCGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGATCTGGAAAGTTT 1020
consensus_13694#1 ------------------------------------------------------------
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 CCGAGAATTTTTTGAAAATCCAGCATTCCGAGCTGATGGTCTAAAGATTTATCCAACTCT 1080
consensus_13694#1 ------------------------------------------------------------
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 TGTGATTCGTGGAACTGGCCTTTATGAGCTCTGGAAAACTGGCAGATACCGAAACTATCC 1140
consensus_13694#1 ------------------------------------------------------------
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 ACCTGAACTTCTGGTGGATATTGTTGCAAGAATTCTATCCATGGTACCACCTTGGACACG 1200
consensus_13694#1 ------------------------------------------------------------
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 AGTTTACCGTGTACAAAGAGATATCCCTATGCCTCTTGTTACTTCTGGTGTTGAAAAAGG 1260
consensus_13694#1 ------------------------------------------------------------
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 TAATCTTCGTGAGCTTGCTTTGGCTCGAATGGAAGATTTAGGCTTGAAGTGCCGAGATGT 1320
consensus_13694#1 ------------------------------------------------------------
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 TAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTAGACCTGACGAAGTAGA 1380
consensus_13694#1 --------------------GGGGGGTGGNTATTGTTGNNAGANTTCTATNCATGGTACA 40
consensus_13694#2 ---------------------------------------------CTGGGAGACCTTTCT 15
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 GCTTGTTAGGCGTGACTATGCTGCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGA 1440
consensus_13694#1 ACCTTGGACACNAGTTNACCGTGNTCAAAGAGATATCCCTATGCCTNTTGNNACTTCNGG 100
consensus_13694#2 CTCATACCGAGGATACCCACCCAGGATATCGCGATTCCGAAAATGTGCCCCAATGGTTAC 75
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 TACACAGCAGGATATCCTTATTGGTCTGCTGCGATTGCGAAAATGTGGCCGCAATGTTAC 1500
consensus_13694#1 TGNTGANAAAGGTAANCTNNNTGAGCTTGCTTTGCCTCGAANGGAANATTGAGGCTTGAA 160
consensus_13694#2 ATGCCCCTGAGCTAGTAGGGAGTTGTTCAATTGTCCGTGAACTTCATGTATATGGAACTC 135
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 ATGCCC-TGAGCTAGTAGGGAGGTGTTCAATTGTCCGTGAACTTCATGTATATGGAACTG 1559
consensus_13694#1 NGGCCGNGATGNTAGAACTCGTGAGGCGGGAATTCAGGATATCCATCACAAAATTANACC 220
consensus_13694#2 CAGTCCCTGTACATGTCGTGATCGCAGACCAAACTACAACACCAGGGTTATGGTACTCTT 195
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 CAGTCCCTGTACATGGTCGTGATGCAGAC-AAACTACAACACCAGGGTTATGGTACTCTT 1618
consensus_13694#1 TGACNAAGNAGGCGCTTGTTCGGCGAGACTATGCTGCAATATGANGGCTGNNANACCTTT 280
consensus_13694#2 TTGATGGAAGAACGCAGAAAGAATTGCTCGCAAGGAGCATCGTTCAAAGAAAATCGCTGT 255
consensus_13694#3 ------------------------------------------------------------
consensus_13694#0 TTGATGGAAGAA-GCAGAAAGAATTGCTCGCAAGGAGCATCGTTCAAAGAAAATCGCTGT 1677
consensus_13694#1 CTCTCATACCAGGATACACAGCAGGATATCCTTATTGGTCTGCT---GCGATTGCGAAAA 337
consensus_13694#2 TATATCAGGAGTTGGGACTCGCCACTACTACCGTAAACTGGGTTATGAACTTGAGGG-CC 314
consensus_13694#3 -----------------------AGGACGAGACAAGGGGGGGTTATGAACTTGAGGGGCC 37
consensus_13694#0 TATATCAGGAGTTGGGACTCGCCACTACTACCGTAAACTGGGTTATGAACTTGAGGGGCC 1737
consensus_13694#1 TGTNGCCGTACTGTNACATGCCCTGAGCTANNAGGGAGGCNNTCAATNGCCCGTGAACTT 397
* * * * * * *
consensus_13694#2 T-TACATGGTCAAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCA-CAG 372
consensus_13694#3 T-TACATGGTCAAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCAGCAG 96
consensus_13694#0 T-TACATGGTCAAATGTCTGGTCTAATAACTTCTATTTATGGATGCTTGTACTCCAGCAG 1796
consensus_13694#1 NATGNATACNNAACTG-CAGNCNCTGTACATGGTCGTGATGCANAC--AAACTACAACAC 454
* ** ** ** * * ** * * * *** * * *** ** **
consensus_13694#2 CATTGTCACTGTAGTATGGGTTTTGTACACCA-GTGTAACTTTTTTT-----------TT 420
consensus_13694#3 CATTGTCACTGTAGTATGGGTTTTGTACACCAAGTGTAACTTTTTTT-----------TT 145
consensus_13694#0 CATTGTCACTGTAGTATGGGTTTTGTACACCA-GTGTAACTTTTTTT-----------TT 1844
consensus_13694#1 CATGGTTATGGTACTNTTTTGATGGTNNACNCANCAANGNATTGCTCGCAAGGAAGCATC 514
*** ** * *** * * * ** ** ** * *
consensus_13694#2 ATATGAATGAGTAAACACCCCTCCTTTCAAAAAATGAGTAAAAAAAAA------------ 468
consensus_13694#3 ATATGAATGAGTAAACACACCTCCTTTCAAAAAATGAGTAAACATAACATTTGATTACAT 205
consensus_13694#0 ATATGAATGAGTAAACACACCTCCTTTCAAAAAATGAGTAAACATAACATTTGATTAC-- 1902
consensus_13694#1 GTATCAAAGAAANATCGCTNCCTATATCATNGAGTTGG--GACTCAGNCACTACTACCGT 572
*** ** ** * * * * * *** * * * * *
consensus_13694#2 ------------------------------------------------------------
consensus_13694#3 ACATCTCAAAAAAAAAA------------------------------------------- 222
consensus_13694#0 ------------------------------------------------------------
consensus_13694#1 AAAACTGNNNNTATGAACCTTGAGGGGCCCTTACATNGGNCAAANTGTCTGGGCTAAAAA 632
consensus_13694#2 --------------------------
consensus_13694#3 --------------------------
consensus_13694#0 --------------------------
consensus_13694#1 CTTCTATTNATGGGNGCTTGGNCTTC 658
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||