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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13706#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1710 fasta sequence
[TATACTTTTGACTGGTTCTCCAGGAACTGGGAAGACTCTGCTTGCTAAGGCTATCGCTGGTGAAGCTGGCCTGCCATTTTTTTATCGGGCAGGTTCTGAATTTGAGGAAATGTTTGTTGGTGTTGGTGCTCGGATAGTGAGGTCATTGTTTCAAGCTGCAAAGAAGAAGGCGCCATGCATTGTTTTCA-TGATG-AAATAGATGCTGTGGGTTCAACTAGAAAACAGTGGGAAGGACACACAAAGAAAACATTGCATCAACTTCTTGTCGAGATGGATGGTTTTGAACAAAATGAGGGAATAATTGTGATGGCTGCGACAAACTTGCCAGATATTCTTGATCCAGCACTTACAAGACCTGGTAGATTCGATAGGCATATTGTTGTCCCCAATCCTGATGTGCGGGGACGCCAAGAAATTCTCGAGCTCTATTTGCAAGATAAGCCAGTATCCAGTGATGTGGATGTTAATGCGATTGCCCGCAGTACTCCTGGCTTCAATGGAGCTGACCTTGCAAACCTAGTAAACATTGCAGCAATTAAGGCTGCAGTTGAAGGTGCTGACAAGTTGGCTGCTGCACAGTTGGAATTTGCGAAAGATCGTATTATCATGGGAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAAGCTTACGGCCTACCATGAAAGTGGGCATGCTATTGTTGCACTCAACACCCAGGGTGCCCACCCCATTCACAAGGCTACTATCCTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCACAGGATGAGACTTCTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC--AAAGTGGTTCATCCC-TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTTAGATAGCACAAAGCCTCTTTTCATTTCTCCCATCTTGCAAATCGGGGTGCATCACAT-GGAGTTTTGCACCACGCAAACTGGCA-GGAAGTTTTAAAAGATGGGAAGACCGGTTTTGC-AAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGAATTGTGTTTGTGATATATATATTTGCATATTTGCAAATCACATTTTTCTTAGACTCTTTCTACCCAATTAATTTTGTAATTAAAACGTGCATACAACAGATGGTGAATTGGTGATACCCGGATCTCAGAT]
[+] EMBL CB678297 [TATACTTTTGACTGGTTCTCCAGGAACTGGGAAGACTCTGCTTGCTAAGGCTATCGCTGGTGAAGCTGGCCTGCCATTTTTTTATCGGGCAGGTTCTGAATTTGAGGAAATGTTTGTTGGTGTTGGTGCTCGGATAGTGAGGTCATTGTTTCAAGCTGCAAAGAAGAAGGCGCCATGCATTGTTTTCATTGATG AAATAGATGCTGTGGGTTCAACTAGAAAACAGTGGGAAGGACACACAAAGAAAACATTGCATCAACTTCTTGTCGAGATGGATGGTTTTGAACAAAATGAGGGAATAATTGTGATGGCTGCGACAAACTTGCCAGATATTCTTGATCCAGCACTTACAAGACCTGGTAGATTCGATAGGCATATTGTTGTCCCCAATCCTGATGTGCGGGGACGCCAAGAAATTCTCGAGCTCTATTTGCAAGATAAGCCAGTATCCAGTGATGTGGATGTTAATGCGATTGCCCGCAGTACTCCTGGCTTCAATGGAGCTGACCTTGCAAACCTAGTAAACATTGCAGCAATTAAGGCTGCAGTTGAAGGTGCTGACAAGTTGGCTGCTGCACAGTTGGAATTTGCGCAAAATCGTATTATCATGGGAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAACCTTACCGCCTACCATGAAAGTG ]
[-] EMBL CA755002 [ AGTGAGGTCATTGTTTCAAGCTGCAAGAAAGAGGGCGCCATGCATNGTNTTCA TGATGAAAATAGATGCTGTGGGTTCAACTAGAAAACAGTGGGAAGGACACACAAAGAAAACATTGCATCAACTTCTNGTCGAGATGGATGGTTNTGAACAAAATGAGGGAATAATTGTGATGGCTGCGACAAACTTGCCAGATATTCTTGATCCAGCACTTACAAGACCTGGTAGATTCGATAGGCATATTGTTGTCCCCAATCNTGATGTGCGGGGACGCCAAGAAATTCTCGAGCTCTATNTGCAAGATAAGCCAGTATCCAGTGATGTGGATGTTAATGCGATTGCCCGCAGTACTCCTGGCTTCAANGGAGCTGACCTTGCAAACCTAGTAAACATTGCAGCAATTAAGGCTGCAGTTGAAGGTGCTGACAAGTTGGCTGCTGCACAGTTGGAATTTGCGAAAGATCGTATTATCATGGGAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAAGCTTACGGCCTACCATGAAAGTGGGCATGCTATTGTTGCACTCAACACCCAGGGTGCCCACCCCATTCACAAGGCTACTATCCTGCCTCGTGGCT ]
[+] EMBL AK068431 [ CAAAATGAGGGAATAATTGTGATGGCTGCGACAAACTTGCCAGATATTCTTGATCCAGCACTTACAAGACCTGGTAGATTCGATAGGCATATTGTTGTCCCCAATCCTGATGTGCGGGGACGCCAAGAAATTCTCGAGCTCTATTTGCAAGATAAGCCAGTATCCAGTGATGTGGATGTTAATGCGATTGCCCGCAGTACTCCTGGCTTCAATGGAGCTGACCTTGCAAACCTAGTAAACATTGCAGCAATTAAGGCTGCAGTTGAAGGTGCTGACAAGTTGGCTGCTGCACAGTTGGAATTTGCGAAAGATCGTATTATCATGGGAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAAGCTTACGGCCTACCATGAAAGTGGGCATGCTATTGTTGCACTCAACACCCAGGGTGCCCACCCCATTCACAAGGCTACTATCCTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCACAGGATGAGACTTCTATTAGCAA AAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC AAAGTGGTTCATCCC TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTCAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTTAGATAGCACAAAGCCTCTTTTCATTTCTCCCATCTTGCAAATCGGGGTGCATCACAT GGAGTTTTGCACCACGCAAACTGGCA GGAAGTTTTAAAAGATGGGAAGACCGGTTTTGC AAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGAATTGTGTTTGTGATATATATATTTGCATATTTGCAAATCACATTTTTCTTAGACTCTTTCTACCCAATTAATTTTGTAATTAAAACGTGCATACAACAGATGGTGAATTGGTGATACCCGGATCTCAGAT]
[+] EMBL AK060394 [ CCAGCACTTACAAGACCTGGTAGATTCGATAGGCATATTGTTGTCCCCAATCCTGATGTGCGGGGACGCCAAGAAATTCTCGAGCTCTATTTGCAAGATAAGTCAGTATCCAGTGATGTGGATGTTAATGCGATTGCCCGCAGTACTCCTGGCTTCAATGGAGCTGACCTTGCAAACCTAGTAAACATTGCAGCAATTAAGGCTGCAGTTGAAGGTGCTGACAAGTTGGCTGCTGCACAGTTGGAATTTGCGAAAGATCGTATTATCATGGGAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAAGCTTACGGCCTACCATGAAAGTGGGCATGCTATTGTTGCACTCAACACCCAGGGTGCCCACCCCATTCACAAGGCTACTATCCTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCACAGGATGAGACTTCTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC AAAGTGGTTCATCCC TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTTAGATAGCACAAAGCCTCTTTTCATTTCTCCCATCTTGCAAATCGGGGTGCATCACAT GGAGTTTTGCACCACGCAAACTGGCA GGAAGTTTTAAAAGATGGGAAGACCGGTTTTGC AAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGAATTGTGTTTGTGATATATATATTT ]
[+] EMBL BE230074 [ GAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAAGCTTACGGCCTACCATGAAAGTGGGCATGCTATTGTTGCACTCAACACCCAGGGTGCCCACCCCATTCACAAGGCTACTATCCTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCACAGGATGAGACTTCTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAACCAAAAGTGGGTCATCCCTTACCAAGAAGA ]
[+] EMBL BE230473 [ GAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAAGCTTACGGCCTACCATGAAAGTGGGCATGCTATTGTTGCACTCAACACCCAGGGTGCCCACCCCATTCACAAGGCTACTATCCTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCACAGGATGAGACTTCTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATA ]
[-] EMBL CB628593 [ CTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC AAAGTGGTTCATCCC TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTCAGATAGCACAAAGCCTCTTATCATTTCTCCCATCTTGCAAATCGGGGTGCATCACAT GGAGTTTTGCACCACGCAAACGGGCA GGAAGTTTTAAAAGATGGGAAGACCGGTTTTGC AAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGGATTGTGTTTGTGATATATATATTTGCATATTTGCAAAT ]
[-] EMBL CB668378 [ AGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC AAAGTGGTTCATCCC TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTTAGATAGCACAAAGCCTCTTTTCATTTCTCCCATCTTGCAAATCGGGGTGCATCACAT GGAGTTTTGCACCACGCAAACTGGCA GGAAGTTTTAAAAGATGGGAAGACCGGTTTTGC AAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGAAGGGTGTTTGTGATATATATATTTGCATATTTGCA ]
[-] EMBL CB628635 [ ATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC AAAGTGGTTCATCCC TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTCAGATAGCACAAAGCCTCTTATCATTTCTCCCATCTTGCAAATCGGGGTGCATCACAT GGAGTTTTGCACCACGCAAACGGGCA GGAAGTTTTAAAAGATGGGAAGACCGGTTTTGC AAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGGATTGTGTTTGTGATATATATATTTGCATATTTGCAAAT ]
[+] EMBL CF312376 [ CAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC AAAGTGGTTCATCCC TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTTAGATAGCACAAAGCCTCTTTTCATTTCTCCCATCTTGCAAATCGGGGTGCATCACATGGGAGTTTTGCACCACGCAAACTGGCAGGGAAGTTTTAAAAGATGGGAAGACCGGTTTTGCAAAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGC ]
[-] EMBL CA762932 [ GGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAAC AAAGTGGTTCATCCC TACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTCAGATAGCACAAAGCCTCTTATCATTTCTCCCATCTTGCAAATCGGGGTGCATCACAT GGAGTTTTGCACCACGCAAACGGGCA GGAAGTTTTAAAAGATGGGAAGACCGGTTTTGC AAGGTGTTGCACGCCGACCGATTATTACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGATGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGGATTGTGTTTGTGATATATATATTTGCATATTTGCAAATCACATTTTTCTTAaaaaaaaaa ]
consensusID : consensus_13706#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[CAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAACAAAGTGGTTCATCCCTACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTCAGATAGCACAAAGCCTTTTATCATTTTTCCCATCTTGCAAATCGGGGTGCATCACATGGAGTTTTGCACCACGCAAACGGGCAGGAAGTTTTAAAAGATGGGAAGACCGGTTTTGCAAGGTGTTGCACGCCGACCGATTAATACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGGATTGTGTTTGTGAAATATATATTTGCATATTTGCAAATCACATTTTTTTTAGACTCTTTCTACCCAATTAATTTTGTAATTAAAACGTGCATACGATGGTGAATTGGTGATAAAAAAAAAAAA]
[-] EMBL CA762931 [CAAGGATAGATGCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAGCATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCAGATGAGATAAACAAAGTGGTTCATCCCTACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAAGAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGCTGTAAATCCATGTACAGTAGTAATTGGCGCCTCAGATAGCACAAAGCCTTTTATCATTTTTCCCATCTTGCAAATCGGGGTGCATCACATGGAGTTTTGCACCACGCAAACGGGCAGGAAGTTTTAAAAGATGGGAAGACCGGTTTTGCAAGGTGTTGCACGCCGACCGATTAATACTGTGGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTTCATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACATTGCATGTTTGGCGTTGTAGGATTGTGTTTGTGAAATATATATTTGCATATTTGCAAATCACATTTTTTTTAGACTCTTTCTACCCAATTAATTTTGTAATTAAAACGTGCATACGATGGTGAATTGGTGATAAAAAAAAAAAA]
consensusID : consensus_13706#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence
[GACGACGACTACGCCTTCTACTACTCTTTCTTCCAGGACGCCGCCGCCGCCGCCGAGTATGCGATTGGCCTCGACAACGCCGCCGTTATGACCAACGGTGGACGGAAGCGGAAGAGGGGACGATGACTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCACAGGATGAGACTTCTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTCATTGT]
[+] EMBL BE230474 [GACGACGACTACGCCTTCTACTACTCTTTCTTCCAGGACGCCGCCGCCGCCGCCGAGTATGCGATTGGCCTCGACAACGCCGCCGTTATGACCAACGGTGGACGGAAGCGGAAGAGGGGACGATGACTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCACAGGATGAGACTTCTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTCATTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13706#0 TATACTTTTGACTGGTTCTCCAGGAACTGGGAAGACTCTGCTTGCTAAGGCTATCGCTGG 60
consensus_13706#1 ------------------------------------------------------------
consensus_13706#2 ------------------------------------------------------------
consensus_13706#0 TGAAGCTGGCCTGCCATTTTTTTATCGGGCAGGTTCTGAATTTGAGGAAATGTTTGTTGG 120
consensus_13706#1 ------------------------------------------------------------
consensus_13706#2 ------------------------------------------------------------
consensus_13706#0 TGTTGGTGCTCGGATAGTGAGGTCATTGTTTCAAGCTGCAAAGAAGAAGGCGCCATGCAT 180
consensus_13706#1 ------------------------------------------------------------
consensus_13706#2 ------------------------------------------------------------
consensus_13706#0 TGTTTTCATGATGAAATAGATGCTGTGGGTTCAACTAGAAAACAGTGGGAAGGACACACA 240
consensus_13706#1 ------------------------------------------------------------
consensus_13706#2 ------------------------------------------------------------
consensus_13706#0 AAGAAAACATTGCATCAACTTCTTGTCGAGATGGATGGTTTTGAACAAAATGAGGGAATA 300
consensus_13706#1 ------------------------------------------------------------
consensus_13706#2 ------------------------------------------------------------
consensus_13706#0 ATTGTGATGGCTGCGACAAACTTGCCAGATATTCTTGATCCAGCACTTACAAGACCTGGT 360
consensus_13706#1 ------------------------------------------------------------
consensus_13706#2 ------------------------------------------------------------
consensus_13706#0 AGATTCGATAGGCATATTGTTGTCCCCAATCCTGATGTGCGGGGACGCCAAGAAATTCTC 420
consensus_13706#1 ------------------------------------------------------------
consensus_13706#2 ------------------------------------------------------------
consensus_13706#0 GAGCTCTATTTGCAAGATAAGCCAGTATCCAGTGATGTGGATGTTAATGCGATTGCCCGC 480
consensus_13706#1 ------------------------------------------------------------
consensus_13706#2 ------------------------------------------------------------
consensus_13706#0 AGTACTCCTGGCTTCAATGGAGCTGACCTTGCAAACCTAGTAAACATTGCAGCAATTAAG 540
consensus_13706#1 ------------------------------------------------------------
consensus_13706#2 ------------------------------------------------------------
consensus_13706#0 GCTGCAGTTGAAGGTGCTGACAAGTTGGCTGCTGCACAGTTGGAATTTGCGAAAGATCGT 600
consensus_13706#1 ------------------------------------------------------------
consensus_13706#2 ------------------------------------------------------------
consensus_13706#0 ATTATCATGGGAACTGAGAGGAAATCAATGTTCATATCTGACGAATCCAAAAAGCTTACG 660
consensus_13706#1 ------------------------------------------------------------
consensus_13706#2 ------------------------------------------------------------
consensus_13706#0 GCCTACCATGAAAGTGGGCATGCTATTGTTGCACTCAACACCCAGGGTGCCCACCCCATT 720
consensus_13706#1 ------------------------------------------------------------
consensus_13706#2 ------------------------------------------------------------
consensus_13706#0 CACAAGGCTACTATCCTGCCTCGTGGCTCTGCCCTTGGAATGGTCACACAGCTTCCTTCA 780
consensus_13706#1 ------------------------------------------------------------
consensus_13706#2 ------------------------------------------------------------
consensus_13706#0 CAGGATGAGACTTCTATTAGCAAGAAACAGCTGCTGGCACGTCTTGATGTTTGCATGGGT 840
consensus_13706#1 ------------------------------------------------------------
consensus_13706#2 ------------------------------------------------------------
consensus_13706#0 GGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAAT 900
consensus_13706#1 ------------------------------------------------------------
consensus_13706#2 ------------------------------------------------------------
consensus_13706#0 GATCTTCATACTGCAACAGAGCTTGCTCAGTACATGGTATCAAATTGTGGGATGAGTGAT 960
consensus_13706#1 ------------------------------------------------------------
consensus_13706#2 ------------------------------------------------------------
consensus_13706#0 GCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGAT 1020
consensus_13706#1 -------------------------------------------------CAAGGATAGAT 11
consensus_13706#2 ------------------------------------------------------------
consensus_13706#0 GCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAG 1080
consensus_13706#1 GCTGAGGTCGTCAAACTCTTAAGAGAAGCTTATGGGCGGGTCAAGCGTTTATTGAAGAAG 71
consensus_13706#2 ------------------------------------------------------------
consensus_13706#0 CATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCA 1140
consensus_13706#1 CATGAGAAGCAATTACACGCTTTAGCAAACGCCCTGCTGGAGCGTGAAACACTCACCGCA 131
consensus_13706#2 ------------------------------------------------------------
consensus_13706#0 GATGAGATAAACAAAGTGGTTCATCCCTACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAA 1200
consensus_13706#1 GATGAGATAAACAAAGTGGTTCATCCCTACCAAGAAGAGCCGCAGCTTTCTTTCCAAGAA 191
consensus_13706#2 ------------------------------------------------------------
consensus_13706#0 GAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGC 1260
consensus_13706#1 GAGGATTTTGCGCTAACTTAAAGGAGGACCTTTTTGTTGCATCAAGGCAGTAGACCCAGC 251
consensus_13706#2 ------------------------------------------------------------
consensus_13706#0 TGTAAATCCATGTACAGTAGTAATTGGCGCCTTAGATAGCACAAAGCCTCTTTTCATTTC 1320
consensus_13706#1 TGTAAATCCATGTACAGTAGTAATTGGCGCCTCAGATAGCACAAAGCCTTTTATCATTTT 311
consensus_13706#2 ---------------GACGACGACTA-CGCCTTCTACTACTCTTTCTTCCAGGACGCCGC 44
* * ***** * * * *
consensus_13706#0 TCCCATCTTGCAAATCGGGGTGCATCACATGGAGTTTTGCACCACGCAAACTGGCAGGAA 1380
consensus_13706#1 TCCCATCTTGCAAATCGGGGTGCATCACATGGAGTTTTGCACCACGCAAACGGGCAGGAA 371
consensus_13706#2 CGCCGCCGCCGAGTATGCGATTGGCCTCGACAACGCCGCCGTTATGACCAACGGTGGACG 104
** * * * * * * * * * * * * ** *
consensus_13706#0 GTTTTAAAAGATGGGAAGACCGGTTTTGCAAGGTGTTGCACGCCGACCGATTATTACTGT 1440
consensus_13706#1 GTTTTAAAAGATGGGAAGACCGGTTTTGCAAGGTGTTGCACGCCGACCGATTAATACTGT 431
consensus_13706#2 GAAGCGGAAGAGGGGACGATGACTGCCTCGTGGCTCTGCCCTTGGAATGGTCA-CACAGC 163
* **** **** ** * * ** *** * ** * * * ** *
consensus_13706#0 GGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTT 1500
consensus_13706#1 GGCGAGGCTCATTGTGGCGCCCATCTTTGCCCAGCAGCAATGCTCCTGGGTTGAGAAGTT 491
consensus_13706#2 TTCCTT-CACAGGATGAGACTTCTATTAGCA-AGAAACA--GCTGCTGG---CACGTCTT 216
* * ** ** * * ** ** ** * ** *** **** * **
consensus_13706#0 CATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACAT 1560
consensus_13706#1 CATACTCAGCTTAGTTAGGAAAAAAGGTGAAAGTGTAATTTTTTTGGGAACTTGTAACAT 551
consensus_13706#2 GATGTTTGCATGGGT--GGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAA--GACAATGT 272
** * * ** ** * * * * * ***** ***** ** *
consensus_13706#0 TGCATGTTTGGCGTTGTAGAATTGTGTTTGTGATATATATATTTGCATATTTGCAAATCA 1620
consensus_13706#1 TGCATGTTTGGCGTTGTAGGATTGTGTTTGTGAAATATATATTTGCATATTTGCAAATCA 611
consensus_13706#2 TACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGA-GCTTGCTCA---GTACATGG 328
* ** * *** * ** * * ** * * * **** * * * **
consensus_13706#0 CATTTTTCTTAGACTCTTTCTACCCAATTAATTTTGTAATTAAAACGTGCATACAACAGA 1680
consensus_13706#1 CATTTTTTTTAGACTCTTTCTACCCAATTAATTTTGTAATTAAAACGTGCATAC----GA 667
consensus_13706#2 TATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTCATTGT----------------- 371
** * * * * *** * *** ***
consensus_13706#0 TGGTGAATTGGTGATACCCGGATCTCAGAT 1710
consensus_13706#1 TGGTGAATTGGTGATAAAAAAAAAAAA--- 694
consensus_13706#2 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||