These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13716#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1494 fasta sequence [CTCGTGGGAGGAGCAGGCGGCGCCTGGGCGACAACGAAGCCGCCGGACCGGACCGCGGACCACATGCTGGGCCCTCTCCGCCGCGCCGCCGTGGCCGCGGGCGCGGCGTCCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGATTACTGCCCTGTCG-----AGACCAAGAAGTTTCATATGGTCTTAATTGGGCTATTGCTGGAAGAGGTGTTGTTGTAAAAGATAAGGTCTTCTATAACCTGGAGAAATCGGAACTTCAGAAAGGTGGTGCTGCTTACACAGAGTGCCTGTCTGGCATTCCACTTCATGTTAGAGGAAATGTCATTAGCGGGATTCCTGATGTTTCAAGAGCTCAATTCGCAAAGCTTCTTAAACTGGTGACCTTTCATCTTTCATCGATCTCAAGTCTGTATGTCCAAGACGGTGCTGTTGGTTCCTCTGTGGAGTGTGATGCAAAGGTCCGTGTTATTAGCGATAACCCCTCTGCTGTTCTGTTGCTCTCCAATATCCTTTGGAAAACACCAGATCGTTCTATTTCCCATGACACATGCCCATTGACTATATATGTTGCCAGCTCGATAAGTGCTAATGTCAGGAATTCTCTTGGTTCTGGATCACAATACGCCAATGGATTTGCAGCAGCAGACATAGAACGCTCGTCACTTATCCTATGTGGTAAAGCATTTGCTGATTCCGCTATGCTCAAAGGTGCTCTTAGTGCTTTGACTGCCCCTGTATTATCAGCAA-GGGGAGGACTACCATTTCCT-GGGTGTACTGATGCCCTACCAGCATTATCAAAGCTTTCTCCAGGCCAGGCTGCTTACCATTTCTTAGCAGGATATTGTGATGGTAAATTTATCCCAGCTTACAGCAAGGACCCCTCCCCTCTTGACCCCATTGCCCTAGCAAATTCCTTATTTTCTCATCTGAAAGAAGATAATACACCTACTTATCTGATAAATGCCAAGAGCTCTGGAAAGTACATAGATGGCAAGGAGTTCGTGAGGCTAATAGAGGTGTTATTATCGAACAATCTGCCAGACCGCAAATCTGAAGATATTAGAGTGGGGGAATTGAAGGGAAAGTACAAGAGCTTTTTATCCAGCAAATTCGGCAAATATTTACCTAAGGAGTTCTCTTTCTGAGAATCATTATCAATGCTTTAGTGTACATTTACCACACTGGATAGGTTTACTGTCTACATTTTTAACTTGATCTGGGATTGTCACCCCTTTCTCCCTCATCTCTCAAGTCT-CAACCACAAAATACGTTACTAATACGTTATGATTTTTTTTCTTTCTCTTGGTTTTGGCATGGTTAATTAAAACTGTGCCTGTTGTAAACGAATTCCAATGTTGTGCACAGGCATGCTTGCTTTTGTGCACAGGCAAGAATTTAGTACCAGCAGGACTGCAGAAGCTTTTTGTGTATTTTTGAGCTCCAAATCGTCCAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK066893 [CTCGTGGGAGGAGCAGGCGGCGCCTGGGCGACAACGAAGCCGCCGGACCGGACCGCGGACCACATGCTGGGCCCTCTCCGCCGCGCCGCCGTGGCCGCGGGCGCGGCGTCCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGATTACTGCCCTGTCG AGACCAAGAAGTTTCATATGGTCTTAATTGGGCTATTGCTGGAAGAGGTGTTGTTGTAAAAGATAAGGTCTTCTATAACCTGGAGAAATCGGAACTTCAGAAAGGTGGTGCTGCTTACACAGAGTGCCTGTCTGGCATTCCACTTCATGTTAGAGGAAATGTCATTAGCGGGATTCCTGATGTTTCAAGAGCTCAATTCGCAAAGCTTCTTAAACTGGTGACCTTTCATCTTTCATCGATCTCAAGTCTGTATGTCCAAGACGGTGCTGTTGGTTCCTCTGTGGAGTGTGATGCAAAGGTCCGTGTTATTAGCGATAACCCCTCTGCTGTTCTGTTGCTCTCCAATATCCTTTGGAAAACACCAGATCGTTCTATTTCCCATGACACATGCCCATTGACTATATATGTTGCCAGCTCGATAAGTGCTAATGTCAGGAATTCTCTTGGTTCTGGATCACAATACGCCAATGGATTTGCAGCAGCAGACATAGAACGCTCGTCACTTATCCTATGTGGTAAAGCATTTGCTGATTCCGCTATGCTCAAAGGTGCTCTTAGTGCTTTGACTGCCCCTGTATTATCAGCAA GGGGAGGACTACCATTTCCT GGGTGTACTGATGCCCTACCAGCATTATCAAAGCTTTCTCCAGGCCAGGCTGCTTACCATTTCTTAGCAGGATATTGTGATGGTAAATTTATCCCAGCTTACAGCAAGGACCCCTCCCCTCTTGACCCCATTGCCCTAGCAAATTCCTTATTTTCTCATCTGAAAGAAGATAATACACCTACTTATCTGATAAATGCCAAGAGCTCTGGAAAGTACATAGATGGCAAGGAGTTCGTGAGGCTAATAGAGGTGTTATTATCGAACAATCTGCCAGACCGCAAATCTGAAGATATTAGAGTGGGGGAATTGAAGGGAAAGTACAAGAGCTTTTTATCCAGCAAATTCGGCAAATATTTACCTAAGGAGTTCTCTTTCTGAGAATCATTATCAATGCTTTAGTGTACATTTACCACACTGGATAGGTTTACTGTCTACATTTTTAACTTGATCTGGGATTGTCACCCCTTTCTCCCTCATCTCTCAAGTCT CAACCACAAAATACGTTACTAATACGTTATGATTTTTTTTCTTTCTCTTGGTTTTGGCATGGTTAATTAAAACTGTGCCTGTTGTAAACGAATTCCAATGTTGTGCACAGGCATGCTTGCTTTTGTGCACAGGCAAGAATTTAGTACCAGCAGGACTGCAGAAG ] [+] EMBL CB639900 [ GCGCCTGGGCGACAACGAAGCCGCCGGACCGGACCGCGGACCACATGCTGGGCCCTCTCCGCCGCGCCGCCGTGGCCGCGGGCGCGGCGTCCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGATTACTGCCCTGTCGAGAGAAGACCAAGAAGTTTCATATGGTCTTAATTGG ] [+] EMBL CB636238 [ GCGCCTGGGCGACAACGAAGCCGCCGGACCGGACCGCGGACCACATGCTGGGCCCTCTCCGCCGCGCCGCCGTGGCCGCGGGCGCGGCGTCCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGATTACTGCCCTGTCGAGAGAAGACCAAGAAGTTTCATATGGTCTTAATTGGGCTATTGCTGGAAGAGGTGTTGTTGTAAAAGATAAGGTCTTCTATAACCTGGAGAAATCGGAACTTCAGAAAGGTGGTGCTGCTTACACAGAGTGCCTGTCTGGCATTCCACTTCATGTTAGAGGAAATGTCATTAGCGGGATTCCTGATGTTTCAAGAGCTCAATTCGCAAAGCTTCTTAAACTGGTGACCTTTCATCTTTCATCGATCTCAAGTCTGTATGTCCAAGACGGTGCTGTCGGTTCCTCTGTGGAGTGTGATGCAAAGGTCCGTGTTATTAG ] [+] EMBL CB636169 [ GCGCCTGGGCGACAACGAAGCCGCCGGACCGGACCGCGGACCACATGCTGGGCCCTCTCCGCCGCGCCGCCGTGGCCGCGGGCGCGGCGTCCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGATTACTGCCCTGTCGAGAGAAGACCAAGAAGTTTCATATGGTCTTAATTGGGCTATTGCTGGAAGAGGTGTTGTTGTAAAAGATAAGGTCTTCTATAACCTGGAGAAATCGGAACTTCAGAAAGGTGGTGCTGCTTACACAGAGTGCCTGTCTGGCATTCCACTTCATGTTAGAGGAAATGTCATTAGCGGGATTCCTGATGTTTCAAGAGCTCAATTCGCAAAGCTTCTTAAACTGGTGACCTTTCATCTTTCATCGATCTCAAGTCTGTATGTCCAAGACGGTGCTGTTGGTTCCTCTGTGGAGTGTGATGCAAAGGTCCGTGTTATTAGCGATAACCCCTCTGCTGTTCTGTTGCTCTCCAATATCCTTTGGAAAACACCAGATCGTTCTATTTNCCATGACACAT ] [+] EMBL CF320054 [ ATTGCTGGAAGAGGTGTTGTTGTAAAAGATAAGGTCTTCTATAACCTGGAGAAATCGGAACTTCAGAAAGGTGGTGCTGCTTACACAGAGTGCCTGTCTGGCATTCCACTTCATGTTAGAGGAAATGTCATTAGCGGGATTCCTGATGTTTCAAGAGCTCAATTCGCAAAGCTTCTTAAACTGGTGACCTTTCATCTTTCATCGATCTCAAGTCTGTATGTCCAAGACGGTGCTGTTGGTTCCTCTGTGGAGTGTGATGC AAGGTCCGTGTTATTAGCGATAACCCCTCTGCTGTTCTGTTGCTCTCCAATATCCTTTGGAAAACACCAGATCGTTCTATTTCCCATGACACATGCCCATTGACTATATATGTTGCCAGCTCGATAAGTGCTAATGTCAGGAATTCTCTTGGTTCTGGATCACAATACGCCAATGGATTTGCAGCAGCAGACATAGAACGCTCGTCACTTATCCTATGTGGTAAAGCATTTGCTGATTCCGCTATGCTCAAAGGTGCTCTTAGTGCTTTGACTGCCCCTGTATTATCAGCAAGGGGGAGGACTACCATTTCCTGGGGTGTACTGATGCCCTACCAGCATTATCAAAGCTTTCTCCAGGCCAGGCTGC ] [-] EMBL CB636170 [ GTGATGGTAAATTTATCCCAGCTTACAGCAAGGACCCCTCCCCTCTTGACCCCATTGCCCTAGCAAATTCCTTATTTTCTCATCTGAAAGAAGATAATACACCTACTTATCTGATAAATGCCAAGAGCTCTGGAAAGTACATAGATGGCAAGGAGTTCGTGAGGCTAATAGAGGTGTTATTATCGAACAATCTGCCAGACCGCAAATCTGAAGATATTAGAGTGGGGGAATTGAAGGGAAAGTACAAGAGCTTTTTATCCAGCAAATTCGGCAAATATTTACCTAAGGAGTTCTCTTTCTGAGAATCATTATCAATGCTTTAGTGTACATTTACCACACTGGATAGGTTTACTGTCTACATTTTTAACTTGATCTGGGATTGTCACCCCTTTCTCCCTCATCTCTCAAGTCT CAACCACAAAATACGTTACTAATACGTTATGATTTTTTTTCTTTCTCTTGGTTTTGGCATGGTTAATTAAAACTGTGCCTGTTGTAAACGAATTCCAATGTTGTGCACAGGCATGCTTGCTTTTGTGCACAGGCAAGAATTTAGTACCAGCAGGACTGCAGAAGC ] [-] EMBL CB636840 [ GGCAAGGAGTTCGTGAGGATAATAGAGGTGTTATTATCGAACAATTTGCCAGACCGCAAATTTGAAGATATTAGAGTGGGGGAATTGAAGGGAAAGTACAAGAGCTTTTTATCCAGCAAATTCGGCAAATATTTACCTAAGGAGTTCTCTTTGTGAGAATCATTATCAATGCTTTAGTGTACATTTACCACACTGGATAGGTTTACTGTCTACATTTTTAACTTGATCTGGGATTGTCACCCCTTTCTCCATCATCTTTCAAGTCTAAAAACA AAAATACGTTACTAATACGTTATGATTTTTTTTCTTTCTCTTGGTTTTGGCATGGTTAATTAAAACTGTGCCTGTTGTAAACGAATTCCAATGTTGTGCACAGGCATGCTTGCTTTTGTGCACAGGCAATAATTTAGTACCAGCAGGACT AAAAAG TTTTTGT ] [-] EMBL CF320055 [ AGAGTGGGGGAATTGAAGGGAAAGTACAAGAGCTTTTTATCCAGCAAATTCGGCAAATATTTACCTAAGGAGTTCTCTTTTTGAGAATCATTATCAATGCTTTAGTGTACATTTACCACACTGGATAGGTTTACTGTCTACATTTTTAACTTGATCTGGGATTGTCACCCCTTTTTCCCTCATTTTTCAAGTTT CAACCACAAAATACGTTACTAATACGTTATGATTTTTTTTCTTTCTCTGGGTTTGGGCATGGTTAATTAAAACTGTGCCTGTTGTAAACGAATTCCAATGTTGTGCACAGGCATGCTTGCTTTTGTGCACAGGCAAGAATTTAGTACCAGCAGGACTGCAGAAGCTTTCTGTGTATTTTTGAGCTCCAAATCGTCCAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13716#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 818 fasta sequence [TGGGAGGAGCAGGCGGCGCCTGGGCGACAACGAAGCCGCCGGACCGGACCGCGGACCACATGCTGGGCCCTCTCCGCCGCGCCGCCGTGGCCGCGGGCGCGGCGTCCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGATTACTGCCCTGTCGAGGTAAGCGTGGCCATACCATACACTTTTCATCCTATATATGCTTGTAAACTCTGATTTTTTATTTTTTACACAAAACACAATGTTCTACTGTGCAAGATCACATGATGACTTTTTTAGATGGTGGATAGAATCTGGCCTCTATATCCACAAGGGGATATACACAGCCAATTACATGATGACCTGACGACTTGATTACATTGTTTGGTGTTTCGTCTACCAAGTTAGATGTTCGGTTCATTCAAATTGCACCAGTCAATACAAACAAAATATTTGAACTACTTTAATGTACTATTTGTTGCACAGAGAAGACCAAGAAGTTTCATATGGTCTTAATTGGGCTATTGCTGGAAGAGGTGTTGTTGTAAAAGATAAGGTCTTCTATAACCTGGAGAAATCGGAACTTCAGAAAGGTGGTGCTGCTTACACAGGTATGTGAGTATATGTATTATGCGTACATACAATTGATATGATTGATGCTAATGTAGAACTTGTTACCTTCTTCTGGGCATGGAGAGTGCCTGTCTGGCATTCCACTTCATGTTAGAGGAAATGTCATTGGCGGGATTCCTGATGTTTCAAGAGCTCAATTCGCAAAGCTTCTTAAACTGGTGACCTTTCATCTTTCATCTATCTNCAGT] [+] EMBL CB620225 [TGGGAGGAGCAGGCGGCGCCTGGGCGACAACGAAGCCGCCGGACCGGACCGCGGACCACATGCTGGGCCCTCTCCGCCGCGCCGCCGTGGCCGCGGGCGCGGCGTCCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGATTACTGCCCTGTCGAGGTAAGCGTGGCCATACCATACACTTTTCATCCTATATATGCTTGTAAACTCTGATTTTTTATTTTTTACACAAAACACAATGTTCTACTGTGCAAGATCACATGATGACTTTTTTAGATGGTGGATAGAATCTGGCCTCTATATCCACAAGGGGATATACACAGCCAATTACATGATGACCTGACGACTTGATTACATTGTTTGGTGTTTCGTCTACCAAGTTAGATGTTCGGTTCATTCAAATTGCACCAGTCAATACAAACAAAATATTTGAACTACTTTAATGTACTATTTGTTGCACAGAGAAGACCAAGAAGTTTCATATGGTCTTAATTGGGCTATTGCTGGAAGAGGTGTTGTTGTAAAAGATAAGGTCTTCTATAACCTGGAGAAATCGGAACTTCAGAAAGGTGGTGCTGCTTACACAGGTATGTGAGTATATGTATTATGCGTACATACAATTGATATGATTGATGCTAATGTAGAACTTGTTACCTTCTTCTGGGCATGGAGAGTGCCTGTCTGGCATTCCACTTCATGTTAGAGGAAATGTCATTGGCGGGATTCCTGATGTTTCAAGAGCTCAATTCGCAAAGCTTCTTAAACTGGTGACCTTTCATCTTTCATCTATCTNCAGT] [+] EMBL CB636839 [ GCAGGCGGCGCCTGGGCGACAACGAAGCCGCCGGACCGGACCGCGGACCACATGCTGGGCCCTCTCCGCCGCGCCGCCGTGGCCGCGGGCGCGGCGTCCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGATTACTGCCCTGTCGAGGTAAGCGTGGCCATACCATACACTTTTCATCCTATATATGCTTGTAAACTCTGATTTTTTATTTTTTACACAAAACACAATGTTCTACTGTGCAAGATCACATGATGACTTTTTTAGATGGTGGATAGAATCTGGCCTCTATATCCACAAGGGGATATACACAGCCAATTACATGATGACCTGACGACTTGATTACATTGTTTGGTGTTTCGTCTACCAAGTTAGATGTTCGGTTCATTCGAATTGCACCAGTCAATACAAACAAAATATTTGAACTACTTTAATGTACTATTTGTTGCACAGAGAAGACCAAGAAGTTTCATATGGTCTTAATTGGGC ] consensusID : consensus_13716#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [TTGTTTACCAGACCAACTCAAGTTATTATTGTATCATCGGATAGTACTGATGCCCTACCAGCATTATCAAAGCTTTCTCCAGGCCAGGCTGCTTACCATTTCTTAGCAGGATATTGTGATGGTAAATTTATCCCAGCTTACAGCAAGGACCCCTCCCCTCTTGACCCCATTGCCCTAGCAAATTCCTTATTTTCTCATCTGAAAGAAGATAATACACCTACTTATCTGATAAATGCCAAGAGCTCTGGAAAGTACATAGATGGCAAGGAGTTCGTGAGGCTAATAGAGGTGTTATTATCGAACAATCTGCCAGACCGCAAATCTGAAGATATTAGAGTGGGGGAATTGAAGGGAAAGTCCAAGAGCTTTTTATCCAGCAAATTCGGCAAATATTTCCCTAAGGAGTTCTCTTTCTGAGAATCATTATCAATGCTTTAGTGTACATTTACCACACTGGATAGGTTTACTGTCTACATTTTTAACTTGATCTGGGATTGTCACCCCTTTCTCCCTCATCTCTCAAGTCTCAACCACAAAATACGTTACTAATACGTTATGATTTTTTTTCTTTCTCTGGGTTTTGGCATGGTTAATTAAAACTGTCCCTGTTGTAAACGAATTCCAATGTTGTGCACAGGCATGCTAAAAGGGGTGCACAGGCAAGAATTTAGTCCCAAAAAAACCATAAA] [-] EMBL CB620226 [TTGTTTACCAGACCAACTCAAGTTATTATTGTATCATCGGATAGTACTGATGCCCTACCAGCATTATCAAAGCTTTCTCCAGGCCAGGCTGCTTACCATTTCTTAGCAGGATATTGTGATGGTAAATTTATCCCAGCTTACAGCAAGGACCCCTCCCCTCTTGACCCCATTGCCCTAGCAAATTCCTTATTTTCTCATCTGAAAGAAGATAATACACCTACTTATCTGATAAATGCCAAGAGCTCTGGAAAGTACATAGATGGCAAGGAGTTCGTGAGGCTAATAGAGGTGTTATTATCGAACAATCTGCCAGACCGCAAATCTGAAGATATTAGAGTGGGGGAATTGAAGGGAAAGTCCAAGAGCTTTTTATCCAGCAAATTCGGCAAATATTTCCCTAAGGAGTTCTCTTTCTGAGAATCATTATCAATGCTTTAGTGTACATTTACCACACTGGATAGGTTTACTGTCTACATTTTTAACTTGATCTGGGATTGTCACCCCTTTCTCCCTCATCTCTCAAGTCTCAACCACAAAATACGTTACTAATACGTTATGATTTTTTTTCTTTCTCTGGGTTTTGGCATGGTTAATTAAAACTGTCCCTGTTGTAAACGAATTCCAATGTTGTGCACAGGCATGCTAAAAGGGGTGCACAGGCAAGAATTTAGTCCCAAAAAAACCATAAA] consensusID : consensus_13716#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [CGGGATATTGGGAGGGTAAATTTTTCCCAGCTTACAGCAAGGGCCCCTCCCCTTTTGACCCCATTGCCCTAGCAAATTCCTTTTTTTTTCTTTTGAAAGAAGATAATCCCCCTACTTTTTTGATAAATGCCAAGGGTTTTGGAAAGTACATAGATGGCAAGGAGTTTGGGGGGTTAATAGGGGGGTTTTTTTTGAACAATTTGCCGGCCCGCAAATTTGAAGATATTAGAGGGGGGGAATTGAAGGGAAAGTCCAAGAGCTTTTTTTCCAGCAAATTGGGCAAATATTTCCCTAGGGGGTTTTTTTTTTGGGAATCATTTTCAATGCTTTAGGGTCCATTTCCCCCCCGGGATAGGTTTTCGGTTTCCATTTTTAACTTGTTTTGGGGTTGTCCCCCCTTTTTCCCTCATTTTTCAAGTTTCACCCCCAAAATACGTTATTAATACGTTAGGGTTTTTTTTTTTTTTTTTGGTTTTGGCAGGGTTAATTAAAACTGTGCCTGTTGTAAAGGAATTCCAATGTTGTGCCCAGGCATGTTAGTTTTTGTGCCCAGGCAAGAATTTTGTGCCCCCAGGGCTGCAGAAGC] [-] EMBL CB631850 [CGGGATATTGGGAGGGTAAATTTTTCCCAGCTTACAGCAAGGGCCCCTCCCCTTTTGACCCCATTGCCCTAGCAAATTCCTTTTTTTTTCTTTTGAAAGAAGATAATCCCCCTACTTTTTTGATAAATGCCAAGGGTTTTGGAAAGTACATAGATGGCAAGGAGTTTGGGGGGTTAATAGGGGGGTTTTTTTTGAACAATTTGCCGGCCCGCAAATTTGAAGATATTAGAGGGGGGGAATTGAAGGGAAAGTCCAAGAGCTTTTTTTCCAGCAAATTGGGCAAATATTTCCCTAGGGGGTTTTTTTTTTGGGAATCATTTTCAATGCTTTAGGGTCCATTTCCCCCCCGGGATAGGTTTTCGGTTTCCATTTTTAACTTGTTTTGGGGTTGTCCCCCCTTTTTCCCTCATTTTTCAAGTTTCACCCCCAAAATACGTTATTAATACGTTAGGGTTTTTTTTTTTTTTTTTGGTTTTGGCAGGGTTAATTAAAACTGTGCCTGTTGTAAAGGAATTCCAATGTTGTGCCCAGGCATGTTAGTTTTTGTGCCCAGGCAAGAATTTTGTGCCCCCAGGGCTGCAGAAGC] consensusID : consensus_13716#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence [CCCTCTCACGAGCAACAGGGCAATGGCGGCGGCAGTGGCTCCCACGAGCGGCGGTGTCTGCGCCNCGCCGCCGTGGCCGCGGGCGCGGCGTCCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGATTACTGCCCTGTCGAGAGAAGACCAATTATTTTCATATGGTCTTAATTGGGCTATTGCTGGAAGAGGTGTTGTTGTAAAAGATAAGGTCTTCTATAACCTGG] [+] EMBL CB639901 [CCCTCTCACGAGCAACAGGGCAATGGCGGCGGCAGTGGCTCCCACGAGCGGCGGTGTCTGCGCCNCGCCGCCGTGGCCGCGGGCGCGGCGTCCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGATTACTGCCCTGTCGAGAGAAGACCAATTATTTTCATATGGTCTTAATTGGGCTATTGCTGGAAGAGGTGTTGTTGTAAAAGATAAGGTCTTCTATAACCTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13716#2 ------------------------------------------------------------ consensus_13716#3 ------------------------------------------------------------ consensus_13716#0 CTCGTGGGAGGAGCAGGCGGCGCCTGGGCGACAACGAAGCCGCCGGACCGGACCGCGGAC 60 consensus_13716#1 ------------------------------------------------------------ consensus_13716#4 ------------------------------------------------------------ consensus_13716#2 ------------------------------------------------------------ consensus_13716#3 ------------------------------------------------------------ consensus_13716#0 CACATGCTGGGCCCTCTCCGCCGCGCCGCCGTGGCCGCGGGCGCGGCGTCCGCGTCGGCG 120 consensus_13716#1 ------------------------------------------------------------ consensus_13716#4 ------------------------------------------------------------ consensus_13716#2 ------------------------------------------------------------ consensus_13716#3 ------------------------------------------------------------ consensus_13716#0 GCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGATTACTGCCCTGT 180 consensus_13716#1 ------------------------------------------------------------ consensus_13716#4 ------------------------------------------------------------ consensus_13716#2 ------------------------------------------------------------ consensus_13716#3 ------------------------------------------------------------ consensus_13716#0 CGAGACCAAGAAGTTTCATATGGTCTTAATTGGGCTATTGCTGGAAGAGGTGTTGTTGTA 240 consensus_13716#1 ------------------------------------------------------------ consensus_13716#4 ------------------------------------------------------------ consensus_13716#2 ------------------------------------------------------------ consensus_13716#3 ------------------------------------------------------------ consensus_13716#0 AAAGATAAGGTCTTCTATAACCTGGAGAAATCGGAACTTCAGAAAGGTGGTGCTGCTTAC 300 consensus_13716#1 ------------------------------------------------------------ consensus_13716#4 ------------------------------------------------------------ consensus_13716#2 ------------------------------------------------------------ consensus_13716#3 ------------------------------------------------------------ consensus_13716#0 ACAGAGTGCCTGTCTGGCATTCCACTTCATGTTAGAGGAAATGTCATTAGCGGGATTCCT 360 consensus_13716#1 ------------------------------------------------------------ consensus_13716#4 ------------------------------------------------------------ consensus_13716#2 ------------------------------------------------------------ consensus_13716#3 ------------------------------------------------------------ consensus_13716#0 GATGTTTCAAGAGCTCAATTCGCAAAGCTTCTTAAACTGGTGACCTTTCATCTTTCATCG 420 consensus_13716#1 ------------------------------------------------------------ consensus_13716#4 ------------------------------------------------------------ consensus_13716#2 ------------------------------------------------------------ consensus_13716#3 ------------------------------------------------------------ consensus_13716#0 ATCTCAAGTCTGTATGTCCAAGACGGTGCTGTTGGTTCCTCTGTGGAGTGTGATGCAAAG 480 consensus_13716#1 ------------------------------------------------------------ consensus_13716#4 ------------------------------------------------------------ consensus_13716#2 ------------------------------------------------------------ consensus_13716#3 ------------------------------------------------------------ consensus_13716#0 GTCCGTGTTATTAGCGATAACCCCTCTGCTGTTCTGTTGCTCTCCAATATCCTTTGGAAA 540 consensus_13716#1 ------------------------------------------------------------ consensus_13716#4 ------------------------------------------------------------ consensus_13716#2 ------------------------------------------------------------ consensus_13716#3 ------------------------------------------------------------ consensus_13716#0 ACACCAGATCGTTCTATTTCCCATGACACATGCCCATTGACTATATATGTTGCCAGCTCG 600 consensus_13716#1 ------------------------------------------------------------ consensus_13716#4 ------------------------------------------------------------ consensus_13716#2 ------------------------------------------------------------ consensus_13716#3 ------------------------------------------------------------ consensus_13716#0 ATAAGTGCTAATGTCAGGAATTCTCTTGGTTCTGGATCACAATACGCCAATGGATTTGCA 660 consensus_13716#1 ------------------------------------------------------------ consensus_13716#4 ------------------------------------------------------------ consensus_13716#2 ------------------------------------------------------------ consensus_13716#3 ------------------------------------------------------------ consensus_13716#0 GCAGCAGACATAGAACGCTCGTCACTTATCCTATGTGGTAAAGCATTTGCTGATTCCGCT 720 consensus_13716#1 ------------------------------------------------------------ consensus_13716#4 ------------------------------------------------------------ consensus_13716#2 ------------------------------TTGTTTACCAGACCAACTCAAGTTATTATT 30 consensus_13716#3 ------------------------------------------------------------ consensus_13716#0 ATGCTCAAAGGTGCTCTTAGTGCTTTGACTGCCCCTGTATTATCAGCAAGGGGAGGACTA 780 consensus_13716#1 ---------------TGGGAGGAGCAGGCGGCGCCTGGGCGACAACGAAGCCGCCGGACC 45 consensus_13716#4 ---------------------------CCCTCTCACGAGCAACAGGGCAATGGC--GGCG 31 consensus_13716#2 GTATCATCGGATAGTACTGATGCCCTACCAGCATTATCAAAGCTTTCTCCAGGCCAGGCT 90 consensus_13716#3 ------------------------------------------------------------ consensus_13716#0 CCATTTCCTGGGTGTACTGATGCCCTACCAGCATTATCAAAGCTTTCTCCAGGCCAGGCT 840 consensus_13716#1 GGACCGCGGACCACATGCTGGGCCCTCTCCGCCGCGCCGCCGTGGCCGCGGGCGCGGCGT 105 consensus_13716#4 GCAGTGGCTCCCACGAGCGGCGGTGTCTGCGCCNCGCCGCCGTGGCCGCGGGCGCGGCGT 91 consensus_13716#2 GCTTACCATTTCTTAGCAGGATATTGTGATGGTAAATTTATCCCAGCTTACAGCAAGGAC 150 consensus_13716#3 ----------------CGGGATATTGGGAGGGTAAATTTTTCCCAGCTTACAGCAAGGGC 44 consensus_13716#0 GCTTACCATTTCTTAGCAGGATATTGTGATGGTAAATTTATCCCAGCTTACAGCAAGGAC 900 consensus_13716#1 CCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGAT 165 consensus_13716#4 CCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGAT 151 * * ** ** * * * * * consensus_13716#2 CCCTCCCCTCTTGA------CCCCATTGCCCTAGCAAATTCCTTATTTTCTCATCTGAAA 204 consensus_13716#3 CCCTCCCCTTTTGA------CCCCATTGCCCTAGCAAATTCCTTTTTTTTTCTTTTGAAA 98 consensus_13716#0 CCCTCCCCTCTTGA------CCCCATTGCCCTAGCAAATTCCTTATTTTCTCATCTGAAA 954 consensus_13716#1 TACTGCCCTGTCGAGGTAAGCGTGGCCATAC-CATACACTTTTCATCCTATATATGCTTG 224 consensus_13716#4 TACTGCCCTGTCGAGAGAAGACCAATTATTTTCATATGGTCTTAATTGGGC-TATTGCTG 210 ** **** * ** * * * * consensus_13716#2 GAAGATAATACACCTACTTATCTGATAAATGCCAAGAGCTCTGGAAAGTACA--TAGATG 262 consensus_13716#3 GAAGATAATCCCCCTACTTTTTTGATAAATGCCAAGGGTTTTGGAAAGTACA--TAGATG 156 consensus_13716#0 GAAGATAATACACCTACTTATCTGATAAATGCCAAGAGCTCTGGAAAGTACA--TAGATG 1012 consensus_13716#1 TAAACTCTGATTTTTTATTTTTTACACAAAACACAATGTTCTACTGTGCAAGATCACATG 284 consensus_13716#4 GAAGAGGTG---------TTGTTGTAAAAGATAAGGTCTTCTATAACCTGG--------- 252 ** * * ** * * consensus_13716#2 GCAAGGAGTTCGTGAGGCTAATAGAGGTGTTATTATCGAACAATCTGCCAGACCGCAAAT 322 consensus_13716#3 GCAAGGAGTTTGGGGGGTTAATAGGGGGGTTTTTTTTGAACAATTTGCCGGCCCGCAAAT 216 consensus_13716#0 GCAAGGAGTTCGTGAGGCTAATAGAGGTGTTATTATCGAACAATCTGCCAGACCGCAAAT 1072 consensus_13716#1 ATGACTTTTTTAGATGGTGGATAGAATCTGGCCTCTATATCCACAAGGGGATATACACAG 344 consensus_13716#4 ------------------------------------------------------------ consensus_13716#2 CTGAAGATATTA-GAGTGGGGGAATTGAAGGGAAAGTCCAAGAGCTT-TTTATCCAGCAA 380 consensus_13716#3 TTGAAGATATTA-GAGGGGGGGAATTGAAGGGAAAGTCCAAGAGCTT-TTTTTCCAGCAA 274 consensus_13716#0 CTGAAGATATTA-GAGTGGGGGAATTGAAGGGAAAGTACAAGAGCTT-TTTATCCAGCAA 1130 consensus_13716#1 CCAATTACATGATGACCTGACGACTTGATTACATTGTTTGGTGTTTCGTCTACCAAGTTA 404 consensus_13716#4 ------------------------------------------------------------ consensus_13716#2 ATTCGGCAAATATTTCCCTAAGGAGTTCTCTTTCTGAG--AATCATTATCAATGCTTTAG 438 consensus_13716#3 ATTGGGCAAATATTTCCCTAGGGGGTTTTTTTTTTGGG--AATCATTTTCAATGCTTTAG 332 consensus_13716#0 ATTCGGCAAATATTTACCTAAGGAGTTCTCTTTCTGAG--AATCATTATCAATGCTTTAG 1188 consensus_13716#1 GATGTTCGGTTCATTCAAATTGCACCAGTCAATACAAACAAAATATTTGAACTACTTTAA 464 consensus_13716#4 ------------------------------------------------------------ consensus_13716#2 TGTAC-ATTTACCACACTGGATAGGTTTACTGTCTACATTT---TTAACTTGATCTGGGA 494 consensus_13716#3 GGTCC-ATTTCCCCCCCGGGATAGGTTTTCGGTTTCCATTT---TTAACTTGTTTTGGGG 388 consensus_13716#0 TGTAC-ATTTACCACACTGGATAGGTTTACTGTCTACATTT---TTAACTTGATCTGGGA 1244 consensus_13716#1 TGTACTATTTGTTGCACAGAGAAGACCAAGAAGTTTCATATGGTCTTAATTGGGCTATTG 524 consensus_13716#4 ------------------------------------------------------------ consensus_13716#2 TTGTCACCCCTTTCTCCCTCATCTCTCAAGTCTC--AACCACAAAATACGTTACTAATAC 552 consensus_13716#3 TTGTCCCCCCTTTTTCCCTCATTTTTCAAGTTTC--ACCCCCAAAATACGTTATTAATAC 446 consensus_13716#0 TTGTCACCCCTTTCTCCCTCATCTCTCAAGTCTC--AACCACAAAATACGTTACTAATAC 1302 consensus_13716#1 CTGGAAGAGGTGTTGTTGTAAAAGATAAGGTCTTCTATAACCTGGAGAAATCGGAACTTC 584 consensus_13716#4 ------------------------------------------------------------ consensus_13716#2 GTTATGATTTTTTTTCTTTCTCTGGGTTTTGGCATGGTTAATTAAAACTGTCCCTGTTGT 612 consensus_13716#3 GTTAGGGTTTTTTTTTTTTTTTTTGGTTTTGGCAGGGTTAATTAAAACTGTGCCTGTTGT 506 consensus_13716#0 GTTATGATTTTTTTTCTTTCTCTTGGTTTTGGCATGGTTAATTAAAACTGTGCCTGTTGT 1362 consensus_13716#1 AGAAAGGTGGTGCTGCTTACACAGGTATGTGAGTATATGTATTATGCGTACATACAATTG 644 consensus_13716#4 ------------------------------------------------------------ consensus_13716#2 AAACGAATTCCAATGTTGTGCACAGGCATGCTAAAAGGGGTGCACAGGCAAGAATTTAGT 672 consensus_13716#3 AAAGGAATTCCAATGTTGTGCCCAGGCATGTTAGTTTTTGTGCCCAGGCAAGAATTTTGT 566 consensus_13716#0 AAACGAATTCCAATGTTGTGCACAGGCATGCTTGCTTTTGTGCACAGGCAAGAATTTAGT 1422 consensus_13716#1 ATATGATTGATGCTAATGTAGAACTTGTTACCTTCTTCTGGGCATGGAGAGTGCCTGTCT 704 consensus_13716#4 ------------------------------------------------------------ consensus_13716#2 CCCAAAAAAACCATAAA------------------------------------------- 689 consensus_13716#3 GCCCCCAGGGCTGCAGAAGC---------------------------------------- 586 consensus_13716#0 ACCAGCAGGACTGCAGAAGCTTTTTGTGTATTTTTGAGCTCCAAATCGTCCAAAAAAAAA 1482 consensus_13716#1 GGCATTCCACTTCATGTTAGAGGAAATGTCATTGGCGGGATTCCTGATGTTTCAAGAGCT 764 consensus_13716#4 ------------------------------------------------------------ consensus_13716#2 ------------------------------------------------------ consensus_13716#3 ------------------------------------------------------ consensus_13716#0 AAAAAAAAAAAA------------------------------------------ 1494 consensus_13716#1 CAATTCGCAAAGCTTCTTAAACTGGTGACCTTTCATCTTTCATCTATCTNCAGT 818 consensus_13716#4 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||