These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1374#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1071 fasta sequence [ACCAGCACACCGAGCCTCCCTCAAAAGCAAGCACTGCATGCTTTCAACATAAGCCTAGCCTCTAGCCATCCATCTAGCTCGATCACCACAGTTCTTAGCCGAAGAGAAAGAAAGTTAATTAGAGAGTTCATATATAGCTGAAGTAATCAAGAACCAAGAAGAGGAGAGGAAGGTGATCGAGGAGGAAGGAAAGGATGGTAGCGGAGGAGGAGGTGGTGGTGGTGTGGGAGGGGGAGAAGGAGGGGGAGATCGACTACGTGTTCAAGGTGGTGGTGGTGGGGGACTCGGCGGTGGGGAAGACGCAGCTGCTGGGGAGGTTCACCAAGGACGAGTTCTTCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCCAGACCCGCACCCTCTCCCTCCACCGCAAGCGCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAAGAACGGTACAGGGCGGTGACGAGCGCGTACTACCGCGGCGCGCTGGGCGCCATGGTGGTGTACGACATCACGCGGCGGCGGACGTTCGAGAACGTGGCGCGGTGGGTGGAGGAGCTCCGGGCGCACGCCGATGGCTCCACCGTGGTGGCGCTGATCGGGAACAAGGCCGACATGCCGGCGGGCCGGCGCGAGGTCGCCGCCGACGAGGCCGCGCGGTTCGCGGAGGAGCAGGGGCTCTTCTTCTCCGAGGCGTCCGCGCTGTCGGGCGACAACGTGGACCGCGCCTTCCTCACGCTGCTCGAGGAGATCTTCGCCGTCGTGTCGCGCAGGGCGCTGGAGCTCGACGAGGCACGGCGGATGCGCGACGGCGGCGCCGGCGGCGGCGAGGTGCTGTCGCTGAAGGGGACCACGCTGGACGTCGGCTCCATCATGGAGACCAGCGCCATGAAGAAGAGCTCGCAGTGCTCCTGCTCGTGAGCGACACACAGAGACTGGATGTTCGCTCGTGTAATGTTTTTGTTTCGACATATCGATTATTACACATTCACATCATTTCACCTCGCGTTCTTGTCAATTATAGAGAAGGATTAGGCATGTAAAACATTGTAAATTTGGTGATTGACAAGAAATGGTT] [+] EMBL AK111543 [ACCAGCACACCGAGCCTCCCTCAAAAGCAAGCACTGCATGCTTTCAACATAAGCCTAGCCTCTAGCCATCCATCTAGCTCGATCACCACAGTTCTTAGCCGAAGAGAAAGAAAGTTAATTAGAGAGTTCATATATAGCTGAAGTAATCAAGAACCAAGAAGAGGAGAGGAAGGTGATCGAGGAGGAAGGAAAGGATGGTAGCGGAGGAGGAGGTGGTGGTGGTGTGGGAGGGGGAGAAGGAGGGGGAGATCGACTACGTGTTCAAGGTGGTGGTGGTGGGGGACTCGGCGGTGGGGAAGACGCAGCTGCTGGGGAGGTTCACCAAGGACGAGTTCTTCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCCAGACCCGCACCCTCTCCCTCCACCGCAAGCGCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAAGAACGGTACAGGGCGGTGACGAGCGCGTACTACCGCGGCGCGCTGGGCGCCATGGTGGTGTACGACATCACGCGGCGGCGGACGTTCGAGAACGTGGCGCGGTGGGTGGAGGAGCTCCGGGCGCACGCCGATGGCTCCACCGTGGTGGCGCTGATCGGGAACAAGGCCGACATGCCGGCGGGCCGGCGCGAGGTCGCCGCCGACGAGGCCGCGCGGTTCGCGGAGGAGCAGGGGCTCTTCTTCTCCGAGGCGTCCGCGCTGTCGGGCGACAACGTGGACCGCGCCTTCCTCACGCTGCTCGAGGAGATCTTCGCCGTCGTGTCGCGCAGGGCGCTGGAGCTCGACGAGGCACGGCGGATGCGCGACGGCGGCGCCGGCGGCGGCGAGGTGCTGTCGCTGAAGGGGACCACGCTGGACGTCGGCTCCATCATGGAGACCAGCGCCATGAAGAAGAGCTCGCAGTGCTCCTGCTCGTGAGCGACACACAGAGACTGGATGTTCGCTCGTGTAATGTTTTTGTTTCGACATATCGATTATTACACATTCACATCATTTCACCTCGCGTTCTTGTCAATTATAGAGAAGGATTAGGCATGTAAAACATTGTAAATTTGGTGATTGACAAGAAATGGTT] consensusID : consensus_1374#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 855 fasta sequence [GCTGCTGGGGAGGTTCACCAAGGACGAGTTCTTCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCCAGACCCGCACCCTCTCCCTCCACCGCAAGCGCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAAGAACGGTAACCATCCATGCACACACCGATCATCTTCTTTCCTCGCAAACGCATCAGTTCATACGCAGTTATCTAGACTCATGACTTAGAAATACTGGAAAGATCATTTTTACTTGTGATAATACTGATAGTATATATAATAGAGCAACGCAATGATAGTCGCTGCGAAATCGTGATCGTTGCTGCGTTTTTGTTAGCGTTTACGTGTTCAAGCTATCCCAACTGATCTGGCTGTTCTTGCATTTGATTAGTAATTTGGTACTCCATATACTTACTCCATATACTTACATAGCGTCAATGACTCATGTTCTGTTGCTTGCTGCGAGGGAGATGGTGTCACATGCATGTCAGCCAAGACACCAGCTTCATTTTGCTTTCATTGTGATTAATTAAGCCGGGAGCTAATTGGATCGGTACAAGGACTCGTGGAAGATTGGATTTGTATTGGTTGGGAAGATAAGGATGCATGTATAGTGGCTGNCAGNTTTCATGAAGCCAGCTGAAATTAAAGCTATGAAATGCGATGCTACTACTAGTAGCTTCTGCTAAGACAACGCGTCAGAACAGAGCACGCCGACCACCGAAAGNGATCCCTGCAGAACCACTAATGCCTNCTTTTGCAGGAAAANATTTGATAGAAACTGGCATGTAGCAAATCAGTCATTACCTGGCTAATCTAACCTGNCCTTGGATTAGGCAGNTGGCGNCTAATTAANAATTTGA] [+] EMBL CA765964 [GCTGCTGGGGAGGTTCACCAAGGACGAGTTCTTCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCCAGACCCGCACCCTCTCCCTCCACCGCAAGCGCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAAGAACGGTAACCATCCATGCACACACCGATCATCTTCTTTCCTCGCAAACGCATCAGTTCATACGCAGTTATCTAGACTCATGACTTAGAAATACTGGAAAGATCATTTTTACTTGTGATAATACTGATAGTATATATAATAGAGCAACGCAATGATAGTCGCTGCGAAATCGTGATCGTTGCTGCGTTTTTGTTAGCGTTTACGTGTTCAAGCTATCCCAACTGATCTGGCTGTTCTTGCATTTGATTAGTAATTTGGTACTCCATATACTTACTCCATATACTTACATAGCGTCAATGACTCATGTTCTGTTGCTTGCTGCGAGGGAGATGGTGTCACATGCATGTCAGCCAAGACACCAGCTTCATTTTGCTTTCATTGTGATTAATTAAGCCGGGAGCTAATTGGATCGGTACAAGGACTCGTGGAAGATTGGATTTGTATTGGTTGGGAAGATAAGGATGCATGTATAGTGGCTGNCAGNTTTCATGAAGCCAGCTGAAATTAAAGCTATGAAATGCGATGCTACTACTAGTAGCTTCTGCTAAGACAACGCGTCAGAACAGAGCACGCCGACCACCGAAAGNGATCCCTGCAGAACCACTAATGCCTNCTTTTGCAGGAAAANATTTGATAGAAACTGGCATGTAGCAAATCAGTCATTACCTGGCTAATCTAACCTGNCCTTGGATTAGGCAGNTGGCGNCTAATTAANAATTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1374#0 ACCAGCACACCGAGCCTCCCTCAAAAGCAAGCACTGCATGCTTTCAACATAAGCCTAGCC 60 consensus_1374#1 ------------------------------------------------------------ consensus_1374#0 TCTAGCCATCCATCTAGCTCGATCACCACAGTTCTTAGCCGAAGAGAAAGAAAGTTAATT 120 consensus_1374#1 ------------------------------------------------------------ consensus_1374#0 AGAGAGTTCATATATAGCTGAAGTAATCAAGAACCAAGAAGAGGAGAGGAAGGTGATCGA 180 consensus_1374#1 ------------------------------------------------------------ consensus_1374#0 GGAGGAAGGAAAGGATGGTAGCGGAGGAGGAGGTGGTGGTGGTGTGGGAGGGGGAGAAGG 240 consensus_1374#1 ------------------------------------------------------------ consensus_1374#0 AGGGGGAGATCGACTACGTGTTCAAGGTGGTGGTGGTGGGGGACTCGGCGGTGGGGAAGA 300 consensus_1374#1 ------------------------------------------------------------ consensus_1374#0 CGCAGCTGCTGGGGAGGTTCACCAAGGACGAGTTCTTCCTCGACTCCAAGTCCACCATCG 360 consensus_1374#1 ----GCTGCTGGGGAGGTTCACCAAGGACGAGTTCTTCCTCGACTCCAAGTCCACCATCG 56 ******************************************************** consensus_1374#0 GCGTCGAGTTCCAGACCCGCACCCTCTCCCTCCACCGCAAGCGCGTCAAGGCCCAGATCT 420 consensus_1374#1 GCGTCGAGTTCCAGACCCGCACCCTCTCCCTCCACCGCAAGCGCGTCAAGGCCCAGATCT 116 ************************************************************ consensus_1374#0 GGGACACCGCCGGCCAAGAACGGTA------CAGGGCGGTGACGAGCGCGTACTACCGCG 474 consensus_1374#1 GGGACACCGCCGGCCAAGAACGGTAACCATCCATGCACACACCGATCATCTTCTTTCCTC 176 ************************* ** * *** * * ** * consensus_1374#0 GC----GCGCTGGGCGCCATGGTGGTGTACGACATCACGCGGCGGCGGACGTTCGAGAAC 530 consensus_1374#1 GCAAACGCATCAGTTCATACGCAGTTATCTAGACTCATGACTTAG-AAATACTGGAAAGA 235 ** ** * * * * * * *** * * * * ** * consensus_1374#0 GTGGCGCGGTGGGTGGAGGAGCTCCGGGCGCACGCCG-ATGGCTCCACCGTGGTGG-CGC 588 consensus_1374#1 TCATTTTTACTTGTGATAATACTGATAGTATATATAATAGAGCAACGCAATGATAGTCGC 295 *** ** * * * ** * * ** * * *** consensus_1374#0 TG----ATCGGGAACAAGGCCGA---CATGCCGGCGGGCCGGCGCGAGGTCGCCGCCGAC 641 consensus_1374#1 TGCGAAATCGTGATCGTTGCTGCGTTTTTGTTAGCGTTTACGTGTTCAAGCTATCCCAAC 355 ** **** ** * ** * ** *** * * * ** ** consensus_1374#0 GAGGCCGCGCGGT-TCGCGGAGGAGCAGGGGCTCTTCTTCTCCGAGGCGTCCGCGCTGTC 700 consensus_1374#1 TGATCTGGCTGTTCTTGCATTTGATTAGTAATTTGGTACTCCATATACTTACTCCATATA 415 * * * * * ** ** ** * * * * * * * * * consensus_1374#0 GGGCGACAACGTGGACCGCGCCT-TCCTCACGCT-GCT-CGAGG-AGAT--CTTCGCCGT 754 consensus_1374#1 CTTACATAGCGTCAATGACTCATGTTCTGTTGCTTGCTGCGAGGGAGATGGTGTCACATG 475 * * *** * * * * * ** *** *** ***** **** ** * consensus_1374#0 CGTGTCGCGCAGGGCGCTGGAGCTCGACGAGGC----ACGGCGGATGCGCGACGGCGGCG 810 consensus_1374#1 CATGTCAGCCAAGACACC--AGCTTCATTTTGCTTTCATTGTGATTAATTAAGCCGGGAG 533 * **** ** * * * **** * ** * * * * * ** * consensus_1374#0 CCGGCGG---CGG--CGAGGTGCTGTCGCTGAAGGGGACCACGCTGGACGTC-------G 858 consensus_1374#1 CTAATTGGATCGGTACAAGGACTCGTGGAAGATTGGATTTGTATTGGTTGGGAAGATAAG 593 * * *** * *** ** * ** ** *** * * consensus_1374#0 GCTCCAT-CATGGAGACCAGCGCCATGAAGAAGAGCTCGCAGTGCTCCTGCTCGTGAGCG 917 consensus_1374#1 GATGCATGTATAGTGGCTGNCAGNTTTCATGAAGCCAGCTGAAATTAAAGCTATGAAATG 653 * * *** ** * * * * * * * * * *** * * consensus_1374#0 ACACACAGAGACTGGATGTTC--GCTCGTGTAATGTTTTTGTTTCGA-CATATCGATTAT 974 consensus_1374#1 CGATGCTACTACTAGTAGCTTCTGCTAAGACAACGCGTCAGAACAGAGCACGCCGACCAC 713 * * *** * * * *** ** * * * ** ** *** * consensus_1374#0 T---ACACATTCACATCATTTCACCT-CGCGTTCTTGTC-----AATTATAGAGAAGGAT 1025 consensus_1374#1 CGAAAGNGATCCCTGCAGAACCACTAATGCCTNCTTTTGCAGGAAAANATTTGATAGAAA 773 * ** * *** ** * *** * ** ** ** * consensus_1374#0 TAGGCATGTAAAACATTGTAAATTTGGTGATTGACAAGAAATGGTT-------------- 1071 consensus_1374#1 CTGGCATGTAGCAAATCAGTCATTACCTGGCTAATCTAACCTGNCCTTGGATTAGGCAGN 833 ******** * ** *** ** * * * ** consensus_1374#0 ---------------------- consensus_1374#1 TGGCGNCTAATTAANAATTTGA 855 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||