cluster # 13747

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Oryza sativa
cluster # 13747 cluster # 13747 Sequences # 14 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13747#0 length = 1561 sequences # 10
consensus_13747#1 length = 676 sequences # 1

consensus_13747#2 length = 471 sequences # 2
consensus_13747#3 length = 388 sequences # 1

consensusID : consensus_13747#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1561
fasta sequence

                              [CACAAGAAATAAAAGCACTTGCTAGCTATGCACTGTAGCAGCATTGCCGCTTTGCTTTGCTTGCTTGCCCCCACACGCTCTCTCTCTCTCTCACTAGCTAATTAGCTGCTACTACATCTTCCATCTCTCTCCTCTCTCTCTCTCTCTAGAAATAAGGAAGGAGAGAAAGAGAAAGAGAGAGAAAACCAGAAAAGAGGAAAGTGAGATAGCTCAATTTCTCCTTCCTTCCTCTCTCCATCTAATCTACACATGCACAAATGTTGCAGCTGATATATGGCTTAGCTAGCATATGCAAAGCAAGCCTTCCTGCAGTCTAGTCACCTCTCAAGCTACATACTCCCAGTACTGCTTCATCTAGCTCTCTCTAGTAGCTAGCTCTATCATCATCGATCATCCTCCTCTCACCGGCCGGCCAACCCAAGAAGAGATTATTCCTCTTCATCTTCTTCTTCCTCTCTGTTCATCACTGGCTTCGGCGGCGGCGGCCGCGGCGGCGATCGATCAGCTGTGAGAAGAAGAAGAAGAAGAAGAAGAAGAAATGTCTGCCCAGATCGCTCCGGCAGAGCAAGTGTGCTATGTGCACTGCAACTTCTGCAACACGATTCTCGCGGTGAGTGTCCCAGGAAACAGCATGCTGAACATCGTGACCGTCCGGTGTGGGCACTGCACGAATCTGCTGTCAGTGAACTTGAGAGGACTGATGCACTCAGCCCCAGCACTACAAGATCATCATCATCATCATCTCCAGGAGAGTGGTCTGAGCGGATGCTTCCGTGATCAAAGTGGCTATCCGGAGTTTGGTTTTTCTGCAGCTTCGTCGTCTTCCAAGCTCAGGCTGCCTCCTGCTGCTGCTGCCATGGTTTCCTACTCGCAGCAAAACCAGCAGCTCGAGCAAGCTCTCCATGCTCGCCCTCCAGAGAAGAGGCAAAGGGTACCTTCAGCCTATAACAGATTTATTAAGGAAGAGATACGAAGGATCAAAGCAAACAACCCCGACATTAGCCACAGGGAAGCCTTCAGCACAGCAGCCAAGAATTGGGCACATTATCCAAACATCCATTTTGGCCTAAGCCCTGGCCATGAGGGTGGCAAGAAGCTCGTCGACGTCGACCCCATCCCAACTGCTCCATCTTCCAAGAAGATCCAAGGTTTCTACTCATAGATTGAGGGGATCAATCTGCCGATACCGATACCGCAAATAGGAGGAAGAGCATCAAGAGCACAAAACATATATATACTGTGAGTAAA-GAAGCAAAGGAAAAAAGAAAA-GAAATGCTGCCACCTTACCTTTGTTCATGACCAAAAAACTTGTGAAGACGTATGTCATAAGTACATAGAAGAAATCAACTCATATAGAGTGAAAAAAAACATACAAAAAATCAAGCTACTATAGCTCATCGATCGACTGAAAGGCTGAATAAACCATTCGACCATAATGTTGTTACATGTATAAGTATGTTTGAAGCTAGCTAGCTGGCTAGTTCTTTATTTCCTCTTTATGTCTTCCAATGAAATTAATTTGCAAACATATTAACAGCACTGTCGACGGATGCAAAAAAGT]

[+] EMBL AK070737             [CACAAGAAATAAAAGCACTTGCTAGCTATGCACTGTAGCAGCATTGCCGCTTTGCTTTGCTTGCTTGCCCCCACACGCTCTCTCTCTCTCTCACTAGCTAATTAGCTGCTACTACATCTTCCATCTCTCTCCTCTCTCTCTCTCTCTAGAAATAAGGAAGGAGAGAAAGAGAAAGAGAGAGAAAACCAGAAAAGAGGAAAGTGAGATAGCTCAATTTCTCCTTCCTTCCTCTCTCCATCTAATCTACACATGCACAAATGTTGCAGCTGATATATGGCTTAGCTAGCATATGCAAAGCAAGCCTTCCTGCAGTCTAGTCACCTCTCAAGCTACATACTCCCAGTACTGCTTCATCTAGCTCTCTCTAGTAGCTAGCTCTATCATCATCGATCATCCTCCTCTCACCGGCCGGCCAACCCAAGAAGAGATTATTCCTCTTCATCTTCTTCTTCCTCTCTGTTCATCACTGGCTTCGGCGGCGGCGGCCGCGGCGGCGATCGATCAGCTGTGAGAAGAAGAAGAAGAAGAAGAAGAAGAAATGTCTGCCCAGATCGCTCCGGCAGAGCAAGTGTGCTATGTGCACTGCAACTTCTGCAACACGATTCTCGCGGTGAGTGTCCCAGGAAACAGCATGCTGAACATCGTGACCGTCCGGTGTGGGCACTGCACGAATCTGCTGTCAGTGAACTTGAGAGGACTGATGCACTCAGCCCCAGCACTACAAGATCATCATCATCATCATCTCCAGGAGAGTGGTCTGAGCGGATGCTTCCGTGATCAAAGTGGCTATCCGGAGTTTGGTTTTTCTGCAGCTTCGTCGTCTTCCAAGCTCAGGCTGCCTCCTGCTGCTGCTGCCATGGTTTCCTACTCGCAGCAAAACCAGCAGCTCGAGCAAGCTCTCCATGCTCGCCCTCCAGAGAAGAGGCAAAGGGTACCTTCAGCCTATAACAGATTTATTAAGGAAGAGATACGAAGGATCAAAGCAAACAGCCCCGACATTAGCCACAGGGAAGCCTTCAGCACAGCAGCCAAGAATTGGGCACATTATCCAAACATCCATTTTGGCCTAAGCCCTGGCCATGAGGGTGGCAAGAAGCTCGTCGACGTCGACCCCATCCCAACTGCTCCATCTTCCAAGAAGATCCAAGGTTTCTACTCATAGATTGAGGGGATCAATCTGCCGATACCGATACCGCAAATAGGAGGAAGAGCATCAAGAGCACAAAACATATATATACTGTGAGTAAA GAAGCAAAGGAAAAAAGAAAA GAAATGCTGCCACCTTACCTTTGTTCATGACCAAAAAACTTGTGAAGACGTATGTCATAAGTACATAGAAGAAATCAACTCATATAGAGTGAAAAAAAACATACAAAAAATCAAGCTACTATAGCTCATCGATCGACTGAAAGGCTGAATAAACCATTCGACCATAATGTTGTTACATGTATAAGTATGTTTGAAGCTAGCTAGCTGG                                                                                    ]
[+] EMBL AK104918             [                                                                                                                                                                                              AAAGAGGAAAGTGAGATAGCTCAATTTCTCCTTCCTTCCTCTCTCCATCTAATCTACACATGCACAAATGTTGCAGCTGATATATGGCTTAGCTAGCATATGCAAAGCAAGCCTTCCTGCAGTCTAGTCACCTCTCAAGCTACATACTCCCAGTACTGCTTCATCTAGCTCTCTCTAGTAGCTAGCTCTATCATCATCGATCATCCTCCTCTCACCGGCCGGCCAACCCAAGAAGAGATTATTCCTCTTCATCTTCTTCTTCCTCTCTGTTCATCACTGGCTTCGGCGGCGGCGGCCGCGGCGGCGATCGATCAGCTGTGAGAAGAAGAAGAAGAAGAAGAAGAAGAAATGTCTGCCCAGATCGCTCCGGCAGAGCAAGTGTGCTATGTGCACTGCAACTTCTGCAACACGATTCTCGCGGTGAGTGTCCCAGGAAACAGCATGCTGAACATCGTGACCGTCCGGTGTGGGCACTGCACGAATCTGCTGTCAGTGAACTTGAGAGGACTGATGCACTCAGCCCCAGCACTACAAGATCATCATCATCATCATCTCCAGGAGAGTGGTCTGAGCGGATGCTTCCGTGATCAAAGTGGCTATCCGGAGTTTGGTTTTTCTGCAGCTTCGTCGTCTTCCAAGCTCAGGCTGCCTCCTGCTGCTGCTGCCATGGTTTCCTACTCGCAGCAAAACCAGCAGCTCGAGCAAGCTCTCCATGCTCGCCCTCCAGAGAAGAGGCAAAGGGTACCTTCAGCCTATAACAGATTTATTAAGGAAGAGATACGAAGGATCAAAGCAAACAACCCCGACATTAGCCACAGGGAAGCCTTCAGCACAGCAGCCAAGAATTGGGCACATTATCCAAACATCCATTTTGGCCTAAGCCCTGGCCATGAGGGTGGCAAGAAGCTCGTCGACGTCGACCCCATCCCAACTGCTCCATCTTCCAAGAAGATCCAAGGTTTCTACTCATAGATTGAGGGGATCAATCTGCCGATACCGATACCGCAAATAGGAGGAAGAGCATCAAGAGCACAAAACATATATATACTGTGAGTAAA GAAGCAAAGGAAAAAAGAAAA GAAATGCTGCCACCTTACCTTTGTTCATGACCAAAAAACTTGTGAAGACGTATGTCATAAGTACATAGAAGAAATCAACTCATATAGAGTGAAAAAAAACATACAAAAAATCAAGCTACTATAGCTCATCGATCGACTGAAAGGCTGAATAAACCATTCGACCATAATGTTGTTACATGTATAAGTATGTTTGAAGCTAGCTAGCTGGCTAGTTCTTTATTTCCTCTTTATGTCTTCCAATGAAATTAATTTGCAAACATAT                              ]
[+] EMBL AU163859             [                                                                                                                                                                                                     AAAGTGAGATAGCTCAATTTCTCCTTCCTTCCTCTCTCCATCTAATCTACACATGCACAAATGTTGCAGCTGATATATGGCTTAGCTAGCATATGAAAAGCAAGCCTTCCTGCAGTCTAGTCACCTCTCAAGCTACATACTCCCAGTACTGCTTCATCTAGCTCTCTCTAGTAGCTAGCTCTATCATCATCGATCATCCTCCTCTCACCGGCCGGCCAACCCAAGAAGAGATTATTCCTCTTCATCTTCTTCTTCCTCTCTGTTCATCACTGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL OSC922               [                                                                                                                                                                                                     AAAGTGAGATAGCTCAATTTCTCCTTCCTTCCTCTCTCCATCTAATCTACACATGCACAAATGTTGCAGCTGATATATGGCTTAGCTAGCATATGAAAAGCAAGCCTTCCTGCAGTCTAGTCACCTCTCAAGCTACATACTCCCAGTACTGCTTCATCTAGCTCTCTCTAGTAGCTAGCTCTATCATCATCGATCANCCTCCTCTCACCGGCCGGCCAACCCAAGAAGAGATTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CF320792             [                                                                                                                                                                                                                                                                                                                  CTGCAGTCTAGTCACCTCTCAAGCTACATACTCCCAGTACTGCTTCATCTAGCTCTCTCTAGTATCTAGCTCTATCATCATCGATCATCCTCCTCTCACCGGCCGGCCAACCCAAGAAGAGATTATTCCTCTTCATCTTCTTCTTCCTCTCTGTTCATCACTGGCTTCGGCGGCGGCGGCCGCGGCGGCGATCGATCAGCTGTGAGAAGAAGAAGAAGAAGAAGAAGAAGAAATGTCTGCCCAGATCGCTCCGGCAGAGCAAGTGTGCTATGTGCACTGCAACTTCTGCAACACGATTCTCGCGGTGAGTGTCCCAGGAAACAGCATGCTGAACATCGTGACCGTCCGGTGTGGGCACTGCACGAATCTGCTGTCAGTGAACTTGAGAGGACTGATGCACTCAGCCCCAGCACTACAAGAACATCATCATCATCATCTCCAGGAGAGTGGTCTGAGCGGATGCTTCCGTGATCAAAGTGGCTATCCGGAGTTTGGTTTTTCTGCAGCTTCGTCGTCTTCCAAGCTCAGGCTGCCTCCTGCTGCTGCTGCCATGGTTTCCTACTCGCAGCAAAACCAGCAGCTCGAGCAAGCTCTCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU083478             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CGATCAGCTGTGAGAAGAAGAAGAAGAAGAAGAAGAAGAAATGTCTGCCCAGATCGCTCCGGCAGAGCAAGTGTGCTATGTGCACTGCAACTTCTGCAACACGATTCTCGCGGTGAGTGTCCCAGGAAACAGCATGCTGAACATCGTGACCGTCCGGTGTGGGCACTGCACGAATCTGCTGTCAGTGAACTTGAGAGGACTGATGCACTCAGCCCCAGCACTACAAGATCATCATCATCATCATCTCCAGGAGAGTGGTCTGAGCGGATGCTTCCGTGATCAAAGTGGCTATCCGGAGTTTGGTTTTTCTGCAGCTTCGTCGTCTTCCAAGCTCAGGCTGCCTCCTGCTGCTGCTGCCATGGTTTCCTACTCGCAGCAAAACCAGCAGCTCGAGCAAGCTCTCCATGCTCGCCCTCCAGAGAAGAGGCAAAGGGTACCTTCAGCCTATAACAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CF320793             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCCCCAGCACTACAAGAACATCATCATCATCATCTCCAGGAGAGTGGTCTGAGCGGATGCTTCCGTGATCAAAGTGGCTATCCGGAGTTTGGTTTTTCTGCAGCTTCGTCGTCTTCCAAGCTCAGGCTGCCTCCTGCTGCTGCTGCCATGGTTTCCTACTCGCAGCAAAACCAGCAGCTCGAGCAAGCTCTCCATGCTCGCCCTCCAGAGAAGAGGCAAAGGGTACCTTCAGCCTATAACAGATTTATTAAGGAAGAGATACGAAGGATCAAAGCAAACAACCCCGACATTAGCCACAGGGAAGCCTTCAGCACAGCAGCCAAGAATTGGGCACATTATCCAAACATCCATTTTGGCCTAAGCCCTGGCCATGAGGGTGGCAAGAAGCTCGTCGAAATAAACCCCATCCCAACTGCTCCATCTTCCAAGAAGATCCAAGGTTTCTACTCATAGATTGAGGGGATCAATCTGCCGATACCGATACCGCAAATAGGAGGAAGAGCATCAAGAGCACAAAACATATAT GACTGT TGTAAA GAAGCAAAGGAAAAA                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BI803971             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AAGCAAACAACCCCGACATTAGCCACAGGGAAGCCTTCAGCACAGCAGCCAAGAATTGGGCACATTATCC AACATCCATTTTGGCCTAAGCCCCGGCCATGAGGGTGGCAAGAAGCTCGTCGACGTCGACCCCATCCCAACTGCTCCATCTTCCAAGAAGATCCAAGGTTTCTACTCATAGATTGAGGGGATCAATCTGCCGACACCGATACCGC AATAGGAGGAAGAGCATCAAGAGCAC AAACATATATATACTGTGAGTAAA GAAGC AAGGAAAAA                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BI796372             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CTTCCAAGAAGATCCAAGGTTTCTACTCATAGATTGAGGGGATCAATCTGCCGACACCGATACCGCAAATAGGAGGAAGAGCATCAAGAGCAC  AACATATATATACTGTGAGTAAA GAAGC AAGGAAAAAAGAAAA AAAATGCTGCCACCTTACCTTTGTTCATGACC AAAAACTTGTGAAGACGTACGTCATAAGTACATAGAAGAAATCAACTCATATAGAGTG AAAAAAACATAC AAAAATCAAGCTACTATAGCTCATCGATCGACTGAAAGGCTGAATAAACCATTTGACCATAATGTTGTTACATGTATAAGTATGTTTGAAGCTAGCTAGCTGGCTAGTTCTTTATTTCCTCTTTATGTCTTCC ATGAAATTAATTTGCAAACATATTAACAGCACTGTCGACGGATGCAAAAA   ]
[-] EMBL C72843               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AAAACATATATATACTGTGAGTAAAGGAAGCAAAGGAAAAAAGAAAAGGAAATGCTGCCACCTTACCTTTGTTCATGACCAAAAAACTTGTGAAGACGTATGTCATAAGTACATAGAAGAAATCAACTCATATAGAGTGAAAAAAAACATACAAAAAATCAAGCTACTATAGCTCATCGATCGACTGAAAGGCTGAATAAACCATTCGACCATAATGTTGTTACATGTATAAGTATGTTTGAAGCTAGCTAGCTGGCTNGTTCTTTATTTCCTCTTTATGTCTTCCAATGAAATTAATTTGCAAACATATTAACAGCACTGTCGACGGATGCAAATCAGT]




>consensus_13747#0
CACAAGAAATAAAAGCACTTGCTAGCTATGCACTGTAGCAGCATTGCCGCTTTGCTTTGC
TTGCTTGCCCCCACACGCTCTCTCTCTCTCTCACTAGCTAATTAGCTGCTACTACATCTT
CCATCTCTCTCCTCTCTCTCTCTCTCTAGAAATAAGGAAGGAGAGAAAGAGAAAGAGAGA
GAAAACCAGAAAAGAGGAAAGTGAGATAGCTCAATTTCTCCTTCCTTCCTCTCTCCATCT
AATCTACACATGCACAAATGTTGCAGCTGATATATGGCTTAGCTAGCATATGCAAAGCAA
GCCTTCCTGCAGTCTAGTCACCTCTCAAGCTACATACTCCCAGTACTGCTTCATCTAGCT
CTCTCTAGTAGCTAGCTCTATCATCATCGATCATCCTCCTCTCACCGGCCGGCCAACCCA
AGAAGAGATTATTCCTCTTCATCTTCTTCTTCCTCTCTGTTCATCACTGGCTTCGGCGGC
GGCGGCCGCGGCGGCGATCGATCAGCTGTGAGAAGAAGAAGAAGAAGAAGAAGAAGAAAT
GTCTGCCCAGATCGCTCCGGCAGAGCAAGTGTGCTATGTGCACTGCAACTTCTGCAACAC
GATTCTCGCGGTGAGTGTCCCAGGAAACAGCATGCTGAACATCGTGACCGTCCGGTGTGG
GCACTGCACGAATCTGCTGTCAGTGAACTTGAGAGGACTGATGCACTCAGCCCCAGCACT
ACAAGATCATCATCATCATCATCTCCAGGAGAGTGGTCTGAGCGGATGCTTCCGTGATCA
AAGTGGCTATCCGGAGTTTGGTTTTTCTGCAGCTTCGTCGTCTTCCAAGCTCAGGCTGCC
TCCTGCTGCTGCTGCCATGGTTTCCTACTCGCAGCAAAACCAGCAGCTCGAGCAAGCTCT
CCATGCTCGCCCTCCAGAGAAGAGGCAAAGGGTACCTTCAGCCTATAACAGATTTATTAA
GGAAGAGATACGAAGGATCAAAGCAAACAACCCCGACATTAGCCACAGGGAAGCCTTCAG
CACAGCAGCCAAGAATTGGGCACATTATCCAAACATCCATTTTGGCCTAAGCCCTGGCCA
TGAGGGTGGCAAGAAGCTCGTCGACGTCGACCCCATCCCAACTGCTCCATCTTCCAAGAA
GATCCAAGGTTTCTACTCATAGATTGAGGGGATCAATCTGCCGATACCGATACCGCAAAT
AGGAGGAAGAGCATCAAGAGCACAAAACATATATATACTGTGAGTAAAGAAGCAAAGGAA
AAAAGAAAAGAAATGCTGCCACCTTACCTTTGTTCATGACCAAAAAACTTGTGAAGACGT
ATGTCATAAGTACATAGAAGAAATCAACTCATATAGAGTGAAAAAAAACATACAAAAAAT
CAAGCTACTATAGCTCATCGATCGACTGAAAGGCTGAATAAACCATTCGACCATAATGTT
GTTACATGTATAAGTATGTTTGAAGCTAGCTAGCTGGCTAGTTCTTTATTTCCTCTTTAT
GTCTTCCAATGAAATTAATTTGCAAACATATTAACAGCACTGTCGACGGATGCAAAAAAG
T

consensusID : consensus_13747#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 676
fasta sequence

                              [ATATATGGCTTAGCTAGCATATGCAAAGCAAGCCTTCCTGCAGTCTAGTCACCTCTCAAGCTACATACTCCCAGTACTGCTTCATCTAGCTCTCTCTAGTAGCTAGCTCTATCATCATCGATCATCCTCCTCTCACCGGCCGGCCAACCCAAGAAGAGATTATTCCTCTTCATCTTCTTCTTCCTCTCTGTTCATCACTGGCTTCGGTGGCGGCGGCCGCGGCGGCGATCGATCAGCTGTGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATGTCTGCCCAGATCGCTCCGGCAGAGCAAGTGTGCTATGTGCACTGCAACTTCTGCAACACGATTCTCGCGGTGAGTGTCCCAGGAAACAGCATGCTGAACATCGTGACCGTCCGGTGTGGGCACTGCACGAATCTGCTGTCAGTGAACTTGAGAGGACTGATGCACTCAGCCCCAGCACTACAAGATCATCATCATCATCATCATCTCCAGGAGAGTGGTCTGAGCGGATGCTTCCGTGATCAAAGTGGCTATCCGGAGTTTGGTTTTTCTGCAGCTTCGTCGTCTTCCAAGCTCAGGCTGCCTCCTGCTGCTGCTGCCATGGTTTCCTACTCGCAGCAAAACCAGCAGCTCGAGCAAGCTCTCCATGCTCGCCGGAA]

[+] EMBL BF430453             [ATATATGGCTTAGCTAGCATATGCAAAGCAAGCCTTCCTGCAGTCTAGTCACCTCTCAAGCTACATACTCCCAGTACTGCTTCATCTAGCTCTCTCTAGTAGCTAGCTCTATCATCATCGATCATCCTCCTCTCACCGGCCGGCCAACCCAAGAAGAGATTATTCCTCTTCATCTTCTTCTTCCTCTCTGTTCATCACTGGCTTCGGTGGCGGCGGCCGCGGCGGCGATCGATCAGCTGTGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATGTCTGCCCAGATCGCTCCGGCAGAGCAAGTGTGCTATGTGCACTGCAACTTCTGCAACACGATTCTCGCGGTGAGTGTCCCAGGAAACAGCATGCTGAACATCGTGACCGTCCGGTGTGGGCACTGCACGAATCTGCTGTCAGTGAACTTGAGAGGACTGATGCACTCAGCCCCAGCACTACAAGATCATCATCATCATCATCATCTCCAGGAGAGTGGTCTGAGCGGATGCTTCCGTGATCAAAGTGGCTATCCGGAGTTTGGTTTTTCTGCAGCTTCGTCGTCTTCCAAGCTCAGGCTGCCTCCTGCTGCTGCTGCCATGGTTTCCTACTCGCAGCAAAACCAGCAGCTCGAGCAAGCTCTCCATGCTCGCCGGAA]




>consensus_13747#1
ATATATGGCTTAGCTAGCATATGCAAAGCAAGCCTTCCTGCAGTCTAGTCACCTCTCAAG
CTACATACTCCCAGTACTGCTTCATCTAGCTCTCTCTAGTAGCTAGCTCTATCATCATCG
ATCATCCTCCTCTCACCGGCCGGCCAACCCAAGAAGAGATTATTCCTCTTCATCTTCTTC
TTCCTCTCTGTTCATCACTGGCTTCGGTGGCGGCGGCCGCGGCGGCGATCGATCAGCTGT
GAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATGT
CTGCCCAGATCGCTCCGGCAGAGCAAGTGTGCTATGTGCACTGCAACTTCTGCAACACGA
TTCTCGCGGTGAGTGTCCCAGGAAACAGCATGCTGAACATCGTGACCGTCCGGTGTGGGC
ACTGCACGAATCTGCTGTCAGTGAACTTGAGAGGACTGATGCACTCAGCCCCAGCACTAC
AAGATCATCATCATCATCATCATCTCCAGGAGAGTGGTCTGAGCGGATGCTTCCGTGATC
AAAGTGGCTATCCGGAGTTTGGTTTTTCTGCAGCTTCGTCGTCTTCCAAGCTCAGGCTGC
CTCCTGCTGCTGCTGCCATGGTTTCCTACTCGCAGCAAAACCAGCAGCTCGAGCAAGCTC
TCCATGCTCGCCGGAA

consensusID : consensus_13747#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 471
fasta sequence

                              [AAGCCCTGGCCATTGAGGNTGGCAAGAAGCTCGTCGACGTCGACCCCATCCCCAACTGCTCCATCTTCCAAGAAGATCCCAAGGTTTCTACTCATAGATTGAGGGGATCAATCTGCCGATACCGATACCGCAAATAGGAGGAAGAGCATCAAGAGCACAAAACATATATATACTGTGAGTAAAGAAGCAAAGGAAAAAAGAAAAGAAATGCTGCCACCTTACCTTTGTTCATGACCAAAAAACTTGTGAAGNCGTATGTCATAAGTACATAGAAGAAATCAACTCATATAGAGTGAAAAAAAACATACAAAAAATCAAACTACTATAGCTCATCGATCGACTGAAAGGCTGAATAAACCATTCGACCATAATGTTGTTACATGTATAAGTATGTTTGAAGCTAGCTAGCTGGCTAGTTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG]

[+] EMBL AU083477             [AAGCCCTGGCCATTGAGGNTGGCAAGAAGCTCGTCGACGTCGACCCCATCCCCAACTGCTCCATCTTCCAAGAAGATCCCAAGGTTTCTACTCATAGATTGAGGGGATCAATCTGCCGATACCGATACCGCAAATAGGAGGAAGAGCATCAAGAGCACAAAACATATATATACTGTGAGTAAAGAAGCAAAGGAAAAAAGAAAAGAAATGCTGCCACCTTACCTTTGTTCATGACCAAAAAACTTGTGAAGNCGTATGTCATAAGTACATAGAAGAAATCAACTCATATAGAGTGAAAAAAAACATACAAAAAATCAAACTACTATAGCTCATCGATCGACTGAAAGGCTGAATAAACCATTCGACCATAATGTTGTTACATGTATAAGTATGTTTGAAGCTAGCTAGCTGGCTAGTTCTTTAAAAAAAAAAAAAAAAAAA                              ]
[-] EMBL AU175155             [                                                                                                                                                                                                                      CACCTTACCTTTGGTCNTGNCCNAAAAACTTGTGAAGNCGTNTGTCATAAGTACATAGNAGAAATCNACTCATATAGAGTGNAAAAAAACATACNAAAAATCAAGCTACTATAGCTCATCGNTCGACTGNAAGGCTGAATAAACCATTCGNCCATAATGTTGTTACATGTATAAGTNTGTTTGAAGCTAGCTAGCTGGCTAGTTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG]




>consensus_13747#2
AAGCCCTGGCCATTGAGGNTGGCAAGAAGCTCGTCGACGTCGACCCCATCCCCAACTGCT
CCATCTTCCAAGAAGATCCCAAGGTTTCTACTCATAGATTGAGGGGATCAATCTGCCGAT
ACCGATACCGCAAATAGGAGGAAGAGCATCAAGAGCACAAAACATATATATACTGTGAGT
AAAGAAGCAAAGGAAAAAAGAAAAGAAATGCTGCCACCTTACCTTTGTTCATGACCAAAA
AACTTGTGAAGNCGTATGTCATAAGTACATAGAAGAAATCAACTCATATAGAGTGAAAAA
AAACATACAAAAAATCAAACTACTATAGCTCATCGATCGACTGAAAGGCTGAATAAACCA
TTCGACCATAATGTTGTTACATGTATAAGTATGTTTGAAGCTAGCTAGCTGGCTAGTTCT
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG

consensusID : consensus_13747#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence

                              [GAAAGAGAGAGAAAACCAGAAAAGAGGAAAGTGAGATAGCTCAATTTCTCCTTCCTTCCTCTCTCCATCTAATCTACACATGCACAAATGTTGCAGCTGATATATGGCTTAGCTAGCATATGCAAAGCAAGCCTTCCTGCAGTCTAGTCACCTCTCAAGCTACATACTCCCAGTACTNCTTCATCTAGCTCTCTCTAGTAGCTAGCTCTATCATCATCGATCATCCTCCTCTCACCGGCCGGCCAACCCAAGAAGAGATTATTCCTCTTCATCTTCTTCTNCCTCTCTGGTTCATCACTGGCTTCGGCGGCGGCGGCCCCACCCGCGGTGGGAGCTCCAGCTTTTTGGTTCCTTTAGGTGAGGGGTAATTNCGGCCTTTGGGNAAATC]

[+] EMBL AU066273             [GAAAGAGAGAGAAAACCAGAAAAGAGGAAAGTGAGATAGCTCAATTTCTCCTTCCTTCCTCTCTCCATCTAATCTACACATGCACAAATGTTGCAGCTGATATATGGCTTAGCTAGCATATGCAAAGCAAGCCTTCCTGCAGTCTAGTCACCTCTCAAGCTACATACTCCCAGTACTNCTTCATCTAGCTCTCTCTAGTAGCTAGCTCTATCATCATCGATCATCCTCCTCTCACCGGCCGGCCAACCCAAGAAGAGATTATTCCTCTTCATCTTCTTCTNCCTCTCTGGTTCATCACTGGCTTCGGCGGCGGCGGCCCCACCCGCGGTGGGAGCTCCAGCTTTTTGGTTCCTTTAGGTGAGGGGTAATTNCGGCCTTTGGGNAAATC]




>consensus_13747#3
GAAAGAGAGAGAAAACCAGAAAAGAGGAAAGTGAGATAGCTCAATTTCTCCTTCCTTCCT
CTCTCCATCTAATCTACACATGCACAAATGTTGCAGCTGATATATGGCTTAGCTAGCATA
TGCAAAGCAAGCCTTCCTGCAGTCTAGTCACCTCTCAAGCTACATACTCCCAGTACTNCT
TCATCTAGCTCTCTCTAGTAGCTAGCTCTATCATCATCGATCATCCTCCTCTCACCGGCC
GGCCAACCCAAGAAGAGATTATTCCTCTTCATCTTCTTCTNCCTCTCTGGTTCATCACTG
GCTTCGGCGGCGGCGGCCCCACCCGCGGTGGGAGCTCCAGCTTTTTGGTTCCTTTAGGTG
AGGGGTAATTNCGGCCTTTGGGNAAATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13747#1      ------------------------------------------------------------
consensus_13747#3      ------------------------------------------------------------
consensus_13747#0      CACAAGAAATAAAAGCACTTGCTAGCTATGCACTGTAGCAGCATTGCCGCTTTGCTTTGC 60
consensus_13747#2      ------------------------------------------------------------
                                                                                   

consensus_13747#1      ------------------------------------------------------------
consensus_13747#3      ------------------------------------------------------------
consensus_13747#0      TTGCTTGCCCCCACACGCTCTCTCTCTCTCTCACTAGCTAATTAGCTGCTACTACATCTT 120
consensus_13747#2      ------------------------------------------------------------
                                                                                   

consensus_13747#1      ------------------------------------------------------------
consensus_13747#3      --------------------------------------------------GAAAGAGAGA 10
consensus_13747#0      CCATCTCTCTCCTCTCTCTCTCTCTCTAGAAATAAGGAAGGAGAGAAAGAGAAAGAGAGA 180
consensus_13747#2      ------------------------------------------------------------
                                                                                   

consensus_13747#1      ------------------------------------------------------------
consensus_13747#3      GAAAACCAGAAAAGAGGAAAGTGAGATAGCTCAATTTCTCCTTCCTTCCTCTCTCCATCT 70
consensus_13747#0      GAAAACCAGAAAAGAGGAAAGTGAGATAGCTCAATTTCTCCTTCCTTCCTCTCTCCATCT 240
consensus_13747#2      ---------------------------------------------AAGCCCTGGCCATTG 15
                                                                                   

consensus_13747#1      -----------------------------ATATATGGCTTAGCTAG--CATATGCAAAGC 29
consensus_13747#3      AATCTACACATGCACAAATGTTGCAGCTGATATATGGCTTAGCTAG--CATATGCAAAGC 128
consensus_13747#0      AATCTACACATGCACAAATGTTGCAGCTGATATATGGCTTAGCTAG--CATATGCAAAGC 298
consensus_13747#2      AGGNTGGCAAGAAGCT--CGTCGACGTCGACCCCATCCCCAACTGCTCCATCTTCCAAG- 72
                                                    *       *  * **    *** * * *** 

consensus_13747#1      AAGCCTTCCTGCAGTCTAGTCACCTCTCAAGCTA--CATACTCCCAGTACTGCTTCATCT 87
consensus_13747#3      AAGCCTTCCTGCAGTCTAGTCACCTCTCAAGCTA--CATACTCCCAGTACTNCTTCATCT 186
consensus_13747#0      AAGCCTTCCTGCAGTCTAGTCACCTCTCAAGCTA--CATACTCCCAGTACTGCTTCATCT 356
consensus_13747#2      AAGATCCCAAGGTTTCTACTCATAGATTGAGGGGATCAATCTGCCGATACCGATACCGCA 132
                       ***    *  *   **** ***    *  **     **  ** **  ***   * *  * 

consensus_13747#1      AGCTCTCTCTAGTAGCTAGCTCTATCATCATCGATCATCCTCCTCTCACCGGCCGGCCAA 147
consensus_13747#3      AGCTCTCTCTAGTAGCTAGCTCTATCATCATCGATCATCCTCCTCTCACCGGCCGGCCAA 246
consensus_13747#0      AGCTCTCTCTAGTAGCTAGCTCTATCATCATCGATCATCCTCCTCTCACCGGCCGGCCAA 416
consensus_13747#2      AA-----TAGGAGGAAGAGCATCAAGAGCACAAAACATATATATACTGTGAGTAAAGAAG 187
                       *      *         ***   *  * **   * ***     *       *      * 

consensus_13747#1      CCCAAGAAGAGATTATTCCTCTTCATCTTCTTCTTCCTCTCTG-TTCATCACTGGCTT-C 205
consensus_13747#3      CCCAAGAAGAGATTATTCCTCTTCATCTTCTTCTNCCTCTCTGGTTCATCACTGGCTT-C 305
consensus_13747#0      CCCAAGAAGAGATTATTCCTCTTCATCTTCTTCTTCCTCTCTG-TTCATCACTGGCTT-C 474
consensus_13747#2      CAAAGGAAAAAAGAAAAGAAATGCTGCCACCTTACCTTTGTTCATGACCAAAAAACTTGT 247
                       *  * *** * *  *      * *  *  * *   * *   *  *     *    ***  

consensus_13747#1      GGTGGCGGCGGCCGCGGCGGCGATCGA----TCAGCT--GTGAGAAGAAGAAGAAGAAGA 259
consensus_13747#3      GGCGGCGGCGGCCCCACCCGCGGTGGGAGCTCCAGCT--TTTTGGTTCCTTTAGGTGAGG 363
consensus_13747#0      GGCGGCGGCGGCCGCGGCGGCGATCGA----TCAGCT--GT------------GAGAAGA 516
consensus_13747#2      GAAGNCGTATGTCATAAGTACATAGAAGAAATCAACTCATATAGAGTGAAAAAAAACATA 307
                       *  * **   * *       *           ** **                    *  

consensus_13747#1      AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATGTCTGCCCAGATCGCTCCGGC 319
consensus_13747#3      GGTAATTNCGGCCTTTGGGNAAATC----------------------------------- 388
consensus_13747#0      AGAAGAAGAAGAAGAAGAAGAAAT---------------GTCTGCCCAGATCGCTCCGGC 561
consensus_13747#2      CAAAAAATCAAACTACTATAGCTCATCGATCGACTGAAAGGCTGAATAAACCATTCGACC 367
                          *                                                        

consensus_13747#1      AGAGCAAGTGTGCTATGTGCACTGCAACTTCTGCAACACGATTCTCGCGGTGAGTGTCCC 379
consensus_13747#3      ------------------------------------------------------------
consensus_13747#0      AGAGCAAGTGTGCTATGTGCACTGCAACTTCTGCAACACGATTCTCGCGGTGAGTGTCCC 621
consensus_13747#2      A---TAATGTTGTTACATGTATAAGTATGTTTGAAGCTAGCTAGCT--GGCTAGTTCTTT 422
                                                                                   

consensus_13747#1      AGGAAACAGCATGCTGAACATCGTGACCGTCCGGTGTGGGCACTGCACGAATCTGCTGTC 439
consensus_13747#3      ------------------------------------------------------------
consensus_13747#0      AGGAAACAGCATGCTGAACATCGTGACCGTCCGGTGTGGGCACTGCACGAATCTGCTGTC 681
consensus_13747#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG----------- 471
                                                                                   

consensus_13747#1      AGTGAACTTGAGAGGACTGATGCACTCAGCCCCAGCACTACAAGATCATCATCATCATCA 499
consensus_13747#3      ------------------------------------------------------------
consensus_13747#0      AGTGAACTTGAGAGGACTGATGCACTCAGCCCCAGCACTACAAGATCATCATCATCATCA 741
consensus_13747#2      ------------------------------------------------------------
                                                                                   

consensus_13747#1      TCATCTCCAGGAGAGTGGTCTGAGCGGATGCTTCCGTGATCAAAGTGGCTATCCGGAGTT 559
consensus_13747#3      ------------------------------------------------------------
consensus_13747#0      ---TCTCCAGGAGAGTGGTCTGAGCGGATGCTTCCGTGATCAAAGTGGCTATCCGGAGTT 798
consensus_13747#2      ------------------------------------------------------------
                                                                                   

consensus_13747#1      TGGTTTTTCTGCAGCTTCGTCGTCTTCCAAGCTCAGGCTGCCTCCTGCTGCTGCTGCCAT 619
consensus_13747#3      ------------------------------------------------------------
consensus_13747#0      TGGTTTTTCTGCAGCTTCGTCGTCTTCCAAGCTCAGGCTGCCTCCTGCTGCTGCTGCCAT 858
consensus_13747#2      ------------------------------------------------------------
                                                                                   

consensus_13747#1      GGTTTCCTACTCGCAGCAAAACCAGCAGCTCGAGCAAGCTCTCCATGCTCGCCGGAA--- 676
consensus_13747#3      ------------------------------------------------------------
consensus_13747#0      GGTTTCCTACTCGCAGCAAAACCAGCAGCTCGAGCAAGCTCTCCATGCTCGCCCTCCAGA 918
consensus_13747#2      ------------------------------------------------------------
                                                                                   

consensus_13747#1      ------------------------------------------------------------
consensus_13747#3      ------------------------------------------------------------
consensus_13747#0      GAAGAGGCAAAGGGTACCTTCAGCCTATAACAGATTTATTAAGGAAGAGATACGAAGGAT 978
consensus_13747#2      ------------------------------------------------------------
                                                                                   

consensus_13747#1      ------------------------------------------------------------
consensus_13747#3      ------------------------------------------------------------
consensus_13747#0      CAAAGCAAACAACCCCGACATTAGCCACAGGGAAGCCTTCAGCACAGCAGCCAAGAATTG 1038
consensus_13747#2      ------------------------------------------------------------
                                                                                   

consensus_13747#1      ------------------------------------------------------------
consensus_13747#3      ------------------------------------------------------------
consensus_13747#0      GGCACATTATCCAAACATCCATTTTGGCCTAAGCCCTGGCCATGAGGGTGGCAAGAAGCT 1098
consensus_13747#2      ------------------------------------------------------------
                                                                                   

consensus_13747#1      ------------------------------------------------------------
consensus_13747#3      ------------------------------------------------------------
consensus_13747#0      CGTCGACGTCGACCCCATCCCAACTGCTCCATCTTCCAAGAAGATCCAAGGTTTCTACTC 1158
consensus_13747#2      ------------------------------------------------------------
                                                                                   

consensus_13747#1      ------------------------------------------------------------
consensus_13747#3      ------------------------------------------------------------
consensus_13747#0      ATAGATTGAGGGGATCAATCTGCCGATACCGATACCGCAAATAGGAGGAAGAGCATCAAG 1218
consensus_13747#2      ------------------------------------------------------------
                                                                                   

consensus_13747#1      ------------------------------------------------------------
consensus_13747#3      ------------------------------------------------------------
consensus_13747#0      AGCACAAAACATATATATACTGTGAGTAAAGAAGCAAAGGAAAAAAGAAAAGAAATGCTG 1278
consensus_13747#2      ------------------------------------------------------------
                                                                                   

consensus_13747#1      ------------------------------------------------------------
consensus_13747#3      ------------------------------------------------------------
consensus_13747#0      CCACCTTACCTTTGTTCATGACCAAAAAACTTGTGAAGACGTATGTCATAAGTACATAGA 1338
consensus_13747#2      ------------------------------------------------------------
                                                                                   

consensus_13747#1      ------------------------------------------------------------
consensus_13747#3      ------------------------------------------------------------
consensus_13747#0      AGAAATCAACTCATATAGAGTGAAAAAAAACATACAAAAAATCAAGCTACTATAGCTCAT 1398
consensus_13747#2      ------------------------------------------------------------
                                                                                   

consensus_13747#1      ------------------------------------------------------------
consensus_13747#3      ------------------------------------------------------------
consensus_13747#0      CGATCGACTGAAAGGCTGAATAAACCATTCGACCATAATGTTGTTACATGTATAAGTATG 1458
consensus_13747#2      ------------------------------------------------------------
                                                                                   

consensus_13747#1      ------------------------------------------------------------
consensus_13747#3      ------------------------------------------------------------
consensus_13747#0      TTTGAAGCTAGCTAGCTGGCTAGTTCTTTATTTCCTCTTTATGTCTTCCAATGAAATTAA 1518
consensus_13747#2      ------------------------------------------------------------
                                                                                   

consensus_13747#1      -------------------------------------------
consensus_13747#3      -------------------------------------------
consensus_13747#0      TTTGCAAACATATTAACAGCACTGTCGACGGATGCAAAAAAGT 1561
consensus_13747#2      -------------------------------------------