These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13754#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 589 fasta sequence [TTTTTTTTTTTTCTAAACTATCCTCAAGTAAAATAGCAGAAATCACTCCATAGCCAGTTAAAATATAAGCACAATAGGAAACACAATGCCTATTGCAAAGACTGCAAACTTAAAGAACAG-ATAAGTCGAGGAGTGCTGCCATTGA-GTTATCGTACAGAAAGCTAAA-TGCCTCTCAAGCAAAAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATAGCTTTGCAACCATCCA-TGGAACACTAAGGCGAAGATGATTCGTCCATCGCTGCAGCACCTAGCGGGGGACGGGGGATGGTTACGGCCTAGAGCTCCAGGGTGAGCTCGAGGCGGTCCGCGTCGCGGTTGAGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATGAGGTGGGAGCGCAGCTGCTTGTACGCCACCTCCTTGCTCGGCCGCCGCGGG-ATCGCGCC-GAGGAACATCCTGACTCCGCTGCGAGGCGAGGCGAGGCGGCGAGGGTTTCGCGGCGGCGGCGGCGGCGGCTAAAACCCTAGACGGCGACGAGACGAATCTCTCTTGGGGA] [+] EMBL CF300343 [TTTTTTTTTTTTCTAAACTATCCTCAAGTAAAATAGCAGAAATCACTCCATAGCCAGTTAAAATATAAGCACAATAGGAAACACAATGCCTATTGCAAAGACTGCAAACTTAAAGAACAG ATAAGTCGAGGAGTGCTGCCATTGA GTTATCGTACAGAAAGCTAAA TGCCTCTCAAG ] [-] EMBL CF300344 [ TTTTTTTTTTTCTAAACTATCCTCAAGTAAAATAGCAGAAATCACTCCATAGCCAGTTAAAATATAAGCACAATAGGAAACACAATGCCTATTGCAAAGACTGCAAACTTAAAGAACAG ATAAGTCGAGGAGTGCTGCCATTGA GTTATCGTACAGAAAGCTAAA TGCCTCTCAAaa ] [-] EMBL AU172793 [ tttttttttTAGCAGAAATCACTCCATAGCCAGTTAAAATATAAGCACAATAGGAAACACAATGCCTATTGCAAAGACTGCAAACTTAAAGAACAG ATAAGTCGAGGAGTGCTGCCATTGA GTTATCGTACAGAAAGCTAAA TGCCTCTCAAGCAAAAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATAGCTTTGCAACCATCCA TGGAACACTAAGGCGAAGATGATTCGTCCATCGCTGCAGCACCTAGCGGGGGACGGGGGATGGTTACGGCCTAGAGCTCCAGGGTGAGCTCGAGGCGGTCCGCGTCGCGGTTGAGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATGAGGTGGGAGCGCAGCTGCTTGTACGCCAC ] [-] EMBL CB634873 [ AATAGGAAACACAATGCCTATTGCAAAGACTGCAAACTTAAAGAACAG ATAAGTCGAGGAGTGCTGCCATTGA GTTATCGTACAGAAAGCTAAA TGCCTCTCAAGCAAAAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCGTATCCAAACATAGCTCAACAAAAATCCA TGGAACACTAAGGCGAAGAAGATTCGTCCATCGCTGCAGCACCTAGCGGGGGACGGGGGACGGTTACGGCCTAGAGCTCCAGGGTGAGCTCGAGGCGGTCCGCGTCGCGGTTGAGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATGAGGTGGGAGCGCAGCTGCTTGTACGCCACCTCCTTGCTCGGCCaaa ] [+] EMBL BU673194 [ AGGAAACACAAGGCCTATTGCAAAGACTGGAAACTTAAAGAACAGAATAAGTCGAGGAGTGCTGCCATTGAGGTTATCGTACAGAAAGCTAAAGTGCCTCTCAAGCAAAAATAATAGGATTAAGTTTTATAAGGGCTGCAAAAATCCTATCCAAACATAGCTTGGCAACCATCCAGGGGAACACTAAGGGGAAGATGATTCGTCCATCGCTGCAGCACCTAGCGGGGGACGGGGGACGGGTACGGCCTAAAGCTCCAGGGGGAGCTCGAGGGGGTCCGCGGTGCGGGTGAGGAAGGGGAGGATGTAGGGGGCGGCGCGGATGGGGGCAACGCAGGAGGCCATGACGATGAGGGGGGAGCGCAGCTGCTTGTACGCCACCTCCTGGCTCGGCCGCCGGGGGAATCGCGCCGGAGGAACATCCTGAATCCGGTGCGAGGCGAGGCGAGGCGGCGAGGGTTTCGCGGGGGCGGAGGCGGGGGGTAAAACCCTAGACGGGGACGAGACGAATCTCTCTTGGGGA] [-] EMBL CF338601 [ TTGCAAAGACTGCAAACTTAAAGAACAG ATAAGTCGAGGAGTGCTGCCATTGA GTTATCGTACAGAAAGCTAAA TGCCTCTCAAGCAAAAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATAGCTTTGCAACCATCCA TGGAACACTAAGGCGAAGATGATTCGTCCATCGCTGCAGCACCTAGCGGGGGACGGGGGATGGTTACGGCCTAGAGCTCCAGGGTGAGCTCGAGGCGGTCCGCGTCGCGGTTGAGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATGAGGTGGGAGCGCAGCTGCTTGTACGCCACCTCCTTGCTCGGCCGCCGCGGG ATCGCGCC GAGGAACATCCTGACTCCGCTGCGAGGCGAGGCGAGGCGGCGAGGGTTTCGCGGCGGCGGCGGCGGCGG ] [+] EMBL CB685250 [ A GTTATCGTACAGAAAGCTAAA TGCCTCTCAAGCAAAAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATATCTTTGCAACCATCCA TGGAACACTAAGGCGAAGATGATTCGTCCATCGCTGCAGCACCTAGCGGGGGACGGGGGATGGTTACGGCCTAAAGCTCCAGGGTGAGCTCGAGGCGGTCCGCGTCGCGGTTGAGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATGAGGTGGGAGCGCAACTGCTTGTACGCCACCTCCTTGCTCGGCCGCCGCGGG ATCGCGCC GAGGAACATCCTGACTCCGCTGCGAGGCGAGGCGAGGCGGCGAGGGTTTCGCGGCGGCGGCGGCGGCGGCTAAAACCCTAGACGGCGACGAGACGAATCTCT ] [-] EMBL AU101424 [ ATGGTTACGGCCTAGAGNTCCAGGTTGAGCTCGAGGCGGTTCGCGTCGCGGTTGAGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATGAGGTGGGAGCGCAGCTGCTTGTACGCCACCTCCTTGCTCGGCCGCCGCGGG ATCGCGCC GAGGAACATCCTGACTCCGCTGCGAGGCGAGGCGAGGCGGCGAGGGTTTCGCGGCGGCGGCGGCGGCGGCTAAAACCCTAGACGGCGACG ] consensusID : consensus_13754#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 495 fasta sequence [TTTTTTTTTTNTTNNGGCAAAGACTGCAAACTANAAGAACAGATAAGTCGAGGAGTGCTG-CCATTGAGTTATCGTACAGAAAGCTAAATGCCTCTCAAGCAAAAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATAGCTTTGCAACCATCCATGGAACACTAAGGCGAAGATGATTCGTCCATCGCTGC-AG-CACCTAGCGGGGGACGGGGGATGGTTACGGCCTAGAGCTCCAGGGTGAGCTCGAGGCGGTCCGCGTCGCGGTTGAGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATGAGGTGGGAGCGCAGCTGCTTGTACGCCACCTCCTTGCTCGGCCGCCGCGGGATCGCGCCGAGGAACATCCTGACTCCGCTGCGAGGCGAGGCGAGGCGGCGAGGGTTTCGCGGCGGCGGCGGCGGCGGCTAAAACCCTAGCCTTTAAAGGGTC] [-] EMBL CA758847 [TTTTTTTTTTNTTNNGGCAAAGACTGCAAACTANAAGAACAGATAAGTCGAGGAGTGCTG CCATTGAGTTATCGTACAGAAAGCTAAATGCCTCTCAAGCAAAAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATAGCTTTGCAACCATCCATGGAACACTAAGGCGAAGATGATTCGTCCATCGCTGC AG CACCTAGCGGGGGACGGGGGATGGTTACGGCCTAGAGCTCCAGGGTGAGCTCGAGGCGGTCCGCGTCGCGGTTGAGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATGAGGTGGGAGCGCAGCTGCTTGTACGCCACCTCCTTGCTCGGCCGCCGCGGGATCGCGCCGAGGAACATCCTGACTCCGCTGCGAGGCGAGGCGAGGCGGCGAGGGTTTCGCGGCGGCGGCGGCGGCGGCTAAAACC ] [-] EMBL CB685249 [ CTGCAAACTTAAAGAACAGATAAGTCGAGGAGTGCTG CCATTGAGTTATCGTACAGAAAGCTAAATGCCTCTCAAGCAAAAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATAGCTTTGCAACCATCCATGGAACACTAAGGCGAAGATGATTCGTCCATCGCTGC AG CACCTAGCGGGGGACGGGGGATGGTTACGGCCTAGAGCTCCAGGGTGAGCTCGAGGCGGTCCGCGTCGCGGTTGAGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATGAGGTGGGAGCGCAGCTGCTTGTACGCCACCTCCTTGCTCGGCCGCCGCGGGATCGCGCCGAGGAACATCCTGACTCCGCTGCGAGGCGAGGCGAGGCGGCGAGGGTTTCGCGGCGGCGGCGGCGGCGGCTAAAACCCTAGCCTTTAAAGGGTC] [-] EMBL C74644 [ AAGACCAGATAA NCGAGGAGT NTGCCCATTGAG TATCGTACAGAAAGCTAAATGCCTCTCAAGCAAAAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATA CTTTGCAACCATCCATGGAACACTAAGGCGAAGATGATTCGTCCATCGCTGCNAGNCA CTAGCGGGGGACGGGGGATGGTTACGGCCTAGAGCTCCAGGGTGAGCTCGAGGCGGTTC CGTCGCGGTTGAGGAAGTGGAGGATGTNGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATGANGTGGGAGCGCAGCTGCTTGTACGCCACCTCCTTGCTCGGCCGCC CGGGAT ] [-] EMBL AU058189 [ tAAACCAAAATTATTNGATTAAG TTTATAA GTCTGCAAAAAT CTATCCAAACATA NTTTGCAACCATCCATGGAACACTAAGGCGAAGATGATTCGTCCATCGCTGCAAG CAACTAGCGGGGGACGGGGGATGGTTACGGCCTAGAGCTCCAGGGTGAGCTCGAGGCGGNTC CGTCGCGGTTGAGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATGAGGTGGGAGCGCAGCTGCTTGTACGCCACCTCCTTGCTCGGCCGCCGCGGGAT ] consensusID : consensus_13754#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 306 fasta sequence [TTTTTTTTTTTTTTTTTTTTAAAAAATAAGCATAATAGGAAACACAATGCCTATTGCAAAGACTGCAAACTTAAAGAACAGATAAGTCGAGGAGTGCTGCCATTGAGTTATCGTACAGAAAGCTAAATGCCTCTCACGCAAAAA-TAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATAGCTTTGCAACCATCCATGGAACACTAAGGCGAAAATGATTCGTCCATCGCTGCAGCACCTAGCGGGGGACGGGGGACGGTTACGGCCTAAAGCTCCCCCCTTGTCTCGTCCTCT] [+] EMBL CA760496 [TTTTTTTTTTTTTTTTTTTTAAAAAATAAGCATAATAGGAAACACAATGCCTATTGCAAAGACTGCAAACTTAAAGAACAGATAAGTCGAGGAGTGCTGCCATTGAGTTATCGTACAGAAAGCTAAATGCCTCTCACGCAAAAA TAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATAGCTTTGCAACCATCCATGGAACACTAAGGCGAAAATGATTCGTCCATCGCTGCAGCACCTAGCGGGGGACGGGGGACGGTTACGGCCTAAAGCTCCCCCCTTGTCTCGTCCTCT] [+] EMBL AU225554 [ gccgcTTTTTTTT TAAGCACAATAGGAAACACAATGCCTATTGCAAAGACTGCAAACTTAAAGAACAGATAAGTCGAGGAGTGCTGCCATTGAGTTATCGTACAGAAAGCTAAATGCCTCTCAAGCAAAAATTAATAGGATTAAGTTTTATAAGGTCTGCAAAgcgg ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13754#0 TTTTTTTTTTTTCTAAACTATCCTCAAGTAAAATAGCAGAAATCACTCCATAGCCAGTTA 60 consensus_13754#1 ------------------------------------------------------------ consensus_13754#2 ---------------------------------------TTTTTTTTTTTTTTTTTTTTA 21 consensus_13754#0 AAATATAAGCACAATAGGAAACACAATGCCTATTGCAAAGACTGCAAACTTAAAGAACAG 120 consensus_13754#1 ------------------TTTTTTTTTTNTTNNGGCAAAGACTGCAAACTANAAGAACAG 42 consensus_13754#2 AAAAATAAGCATAATAGGAAACACAATGCCTATTGCAAAGACTGCAAACTTAAAGAACAG 81 * * **************** ******** consensus_13754#0 ATAAGTCGAGGAGTGCTGCCATTGAGTTATCGTACAGAAAGCTAAATGCCTCTCAAGCAA 180 consensus_13754#1 ATAAGTCGAGGAGTGCTGCCATTGAGTTATCGTACAGAAAGCTAAATGCCTCTCAAGCAA 102 consensus_13754#2 ATAAGTCGAGGAGTGCTGCCATTGAGTTATCGTACAGAAAGCTAAATGCCTCTCACGCAA 141 ******************************************************* **** consensus_13754#0 AAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATAGCTTTGCAA 240 consensus_13754#1 AAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATAGCTTTGCAA 162 consensus_13754#2 AAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATAGCTTTGCAA 201 ************************************************************ consensus_13754#0 CCATCCATGGAACACTAAGGCGAAGATGATTCGTCCATCGCTGCAGCACCTAGCGGGGGA 300 consensus_13754#1 CCATCCATGGAACACTAAGGCGAAGATGATTCGTCCATCGCTGCAGCACCTAGCGGGGGA 222 consensus_13754#2 CCATCCATGGAACACTAAGGCGAAAATGATTCGTCCATCGCTGCAGCACCTAGCGGGGGA 261 ************************ *********************************** consensus_13754#0 CGGGGGATGGTTACGGCCTAGAGCTCCAGGGTGAGCTCGAGGCGGTCCGCGTCGCGGTTG 360 consensus_13754#1 CGGGGGATGGTTACGGCCTAGAGCTCCAGGGTGAGCTCGAGGCGGTCCGCGTCGCGGTTG 282 consensus_13754#2 CGGGGGACGGTTACGGCCTAAAGCTCCCCCCTTGTCTCGTCCTCT--------------- 306 ******* ************ ****** * **** consensus_13754#0 AGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATG 420 consensus_13754#1 AGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATG 342 consensus_13754#2 ------------------------------------------------------------ consensus_13754#0 AGGTGGGAGCGCAGCTGCTTGTACGCCACCTCCTTGCTCGGCCGCCGCGGGATCGCGCCG 480 consensus_13754#1 AGGTGGGAGCGCAGCTGCTTGTACGCCACCTCCTTGCTCGGCCGCCGCGGGATCGCGCCG 402 consensus_13754#2 ------------------------------------------------------------ consensus_13754#0 AGGAACATCCTGACTCCGCTGCGAGGCGAGGCGAGGCGGCGAGGGTTTCGCGGCGGCGGC 540 consensus_13754#1 AGGAACATCCTGACTCCGCTGCGAGGCGAGGCGAGGCGGCGAGGGTTTCGCGGCGGCGGC 462 consensus_13754#2 ------------------------------------------------------------ consensus_13754#0 GGCGGCGGCTAAAACCCTAGACGGCGACGAGACGAATCTCTCTTGGGGA 589 consensus_13754#1 GGCGGCGGCTAAAACCCTAGCCTTTAAAGGGTC---------------- 495 consensus_13754#2 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||