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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13754#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 589 fasta sequence
[TTTTTTTTTTTTCTAAACTATCCTCAAGTAAAATAGCAGAAATCACTCCATAGCCAGTTAAAATATAAGCACAATAGGAAACACAATGCCTATTGCAAAGACTGCAAACTTAAAGAACAG-ATAAGTCGAGGAGTGCTGCCATTGA-GTTATCGTACAGAAAGCTAAA-TGCCTCTCAAGCAAAAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATAGCTTTGCAACCATCCA-TGGAACACTAAGGCGAAGATGATTCGTCCATCGCTGCAGCACCTAGCGGGGGACGGGGGATGGTTACGGCCTAGAGCTCCAGGGTGAGCTCGAGGCGGTCCGCGTCGCGGTTGAGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATGAGGTGGGAGCGCAGCTGCTTGTACGCCACCTCCTTGCTCGGCCGCCGCGGG-ATCGCGCC-GAGGAACATCCTGACTCCGCTGCGAGGCGAGGCGAGGCGGCGAGGGTTTCGCGGCGGCGGCGGCGGCGGCTAAAACCCTAGACGGCGACGAGACGAATCTCTCTTGGGGA]
[+] EMBL CF300343 [TTTTTTTTTTTTCTAAACTATCCTCAAGTAAAATAGCAGAAATCACTCCATAGCCAGTTAAAATATAAGCACAATAGGAAACACAATGCCTATTGCAAAGACTGCAAACTTAAAGAACAG ATAAGTCGAGGAGTGCTGCCATTGA GTTATCGTACAGAAAGCTAAA TGCCTCTCAAG ]
[-] EMBL CF300344 [ TTTTTTTTTTTCTAAACTATCCTCAAGTAAAATAGCAGAAATCACTCCATAGCCAGTTAAAATATAAGCACAATAGGAAACACAATGCCTATTGCAAAGACTGCAAACTTAAAGAACAG ATAAGTCGAGGAGTGCTGCCATTGA GTTATCGTACAGAAAGCTAAA TGCCTCTCAAaa ]
[-] EMBL AU172793 [ tttttttttTAGCAGAAATCACTCCATAGCCAGTTAAAATATAAGCACAATAGGAAACACAATGCCTATTGCAAAGACTGCAAACTTAAAGAACAG ATAAGTCGAGGAGTGCTGCCATTGA GTTATCGTACAGAAAGCTAAA TGCCTCTCAAGCAAAAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATAGCTTTGCAACCATCCA TGGAACACTAAGGCGAAGATGATTCGTCCATCGCTGCAGCACCTAGCGGGGGACGGGGGATGGTTACGGCCTAGAGCTCCAGGGTGAGCTCGAGGCGGTCCGCGTCGCGGTTGAGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATGAGGTGGGAGCGCAGCTGCTTGTACGCCAC ]
[-] EMBL CB634873 [ AATAGGAAACACAATGCCTATTGCAAAGACTGCAAACTTAAAGAACAG ATAAGTCGAGGAGTGCTGCCATTGA GTTATCGTACAGAAAGCTAAA TGCCTCTCAAGCAAAAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCGTATCCAAACATAGCTCAACAAAAATCCA TGGAACACTAAGGCGAAGAAGATTCGTCCATCGCTGCAGCACCTAGCGGGGGACGGGGGACGGTTACGGCCTAGAGCTCCAGGGTGAGCTCGAGGCGGTCCGCGTCGCGGTTGAGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATGAGGTGGGAGCGCAGCTGCTTGTACGCCACCTCCTTGCTCGGCCaaa ]
[+] EMBL BU673194 [ AGGAAACACAAGGCCTATTGCAAAGACTGGAAACTTAAAGAACAGAATAAGTCGAGGAGTGCTGCCATTGAGGTTATCGTACAGAAAGCTAAAGTGCCTCTCAAGCAAAAATAATAGGATTAAGTTTTATAAGGGCTGCAAAAATCCTATCCAAACATAGCTTGGCAACCATCCAGGGGAACACTAAGGGGAAGATGATTCGTCCATCGCTGCAGCACCTAGCGGGGGACGGGGGACGGGTACGGCCTAAAGCTCCAGGGGGAGCTCGAGGGGGTCCGCGGTGCGGGTGAGGAAGGGGAGGATGTAGGGGGCGGCGCGGATGGGGGCAACGCAGGAGGCCATGACGATGAGGGGGGAGCGCAGCTGCTTGTACGCCACCTCCTGGCTCGGCCGCCGGGGGAATCGCGCCGGAGGAACATCCTGAATCCGGTGCGAGGCGAGGCGAGGCGGCGAGGGTTTCGCGGGGGCGGAGGCGGGGGGTAAAACCCTAGACGGGGACGAGACGAATCTCTCTTGGGGA]
[-] EMBL CF338601 [ TTGCAAAGACTGCAAACTTAAAGAACAG ATAAGTCGAGGAGTGCTGCCATTGA GTTATCGTACAGAAAGCTAAA TGCCTCTCAAGCAAAAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATAGCTTTGCAACCATCCA TGGAACACTAAGGCGAAGATGATTCGTCCATCGCTGCAGCACCTAGCGGGGGACGGGGGATGGTTACGGCCTAGAGCTCCAGGGTGAGCTCGAGGCGGTCCGCGTCGCGGTTGAGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATGAGGTGGGAGCGCAGCTGCTTGTACGCCACCTCCTTGCTCGGCCGCCGCGGG ATCGCGCC GAGGAACATCCTGACTCCGCTGCGAGGCGAGGCGAGGCGGCGAGGGTTTCGCGGCGGCGGCGGCGGCGG ]
[+] EMBL CB685250 [ A GTTATCGTACAGAAAGCTAAA TGCCTCTCAAGCAAAAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATATCTTTGCAACCATCCA TGGAACACTAAGGCGAAGATGATTCGTCCATCGCTGCAGCACCTAGCGGGGGACGGGGGATGGTTACGGCCTAAAGCTCCAGGGTGAGCTCGAGGCGGTCCGCGTCGCGGTTGAGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATGAGGTGGGAGCGCAACTGCTTGTACGCCACCTCCTTGCTCGGCCGCCGCGGG ATCGCGCC GAGGAACATCCTGACTCCGCTGCGAGGCGAGGCGAGGCGGCGAGGGTTTCGCGGCGGCGGCGGCGGCGGCTAAAACCCTAGACGGCGACGAGACGAATCTCT ]
[-] EMBL AU101424 [ ATGGTTACGGCCTAGAGNTCCAGGTTGAGCTCGAGGCGGTTCGCGTCGCGGTTGAGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATGAGGTGGGAGCGCAGCTGCTTGTACGCCACCTCCTTGCTCGGCCGCCGCGGG ATCGCGCC GAGGAACATCCTGACTCCGCTGCGAGGCGAGGCGAGGCGGCGAGGGTTTCGCGGCGGCGGCGGCGGCGGCTAAAACCCTAGACGGCGACG ]
consensusID : consensus_13754#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 495 fasta sequence
[TTTTTTTTTTNTTNNGGCAAAGACTGCAAACTANAAGAACAGATAAGTCGAGGAGTGCTG-CCATTGAGTTATCGTACAGAAAGCTAAATGCCTCTCAAGCAAAAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATAGCTTTGCAACCATCCATGGAACACTAAGGCGAAGATGATTCGTCCATCGCTGC-AG-CACCTAGCGGGGGACGGGGGATGGTTACGGCCTAGAGCTCCAGGGTGAGCTCGAGGCGGTCCGCGTCGCGGTTGAGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATGAGGTGGGAGCGCAGCTGCTTGTACGCCACCTCCTTGCTCGGCCGCCGCGGGATCGCGCCGAGGAACATCCTGACTCCGCTGCGAGGCGAGGCGAGGCGGCGAGGGTTTCGCGGCGGCGGCGGCGGCGGCTAAAACCCTAGCCTTTAAAGGGTC]
[-] EMBL CA758847 [TTTTTTTTTTNTTNNGGCAAAGACTGCAAACTANAAGAACAGATAAGTCGAGGAGTGCTG CCATTGAGTTATCGTACAGAAAGCTAAATGCCTCTCAAGCAAAAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATAGCTTTGCAACCATCCATGGAACACTAAGGCGAAGATGATTCGTCCATCGCTGC AG CACCTAGCGGGGGACGGGGGATGGTTACGGCCTAGAGCTCCAGGGTGAGCTCGAGGCGGTCCGCGTCGCGGTTGAGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATGAGGTGGGAGCGCAGCTGCTTGTACGCCACCTCCTTGCTCGGCCGCCGCGGGATCGCGCCGAGGAACATCCTGACTCCGCTGCGAGGCGAGGCGAGGCGGCGAGGGTTTCGCGGCGGCGGCGGCGGCGGCTAAAACC ]
[-] EMBL CB685249 [ CTGCAAACTTAAAGAACAGATAAGTCGAGGAGTGCTG CCATTGAGTTATCGTACAGAAAGCTAAATGCCTCTCAAGCAAAAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATAGCTTTGCAACCATCCATGGAACACTAAGGCGAAGATGATTCGTCCATCGCTGC AG CACCTAGCGGGGGACGGGGGATGGTTACGGCCTAGAGCTCCAGGGTGAGCTCGAGGCGGTCCGCGTCGCGGTTGAGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATGAGGTGGGAGCGCAGCTGCTTGTACGCCACCTCCTTGCTCGGCCGCCGCGGGATCGCGCCGAGGAACATCCTGACTCCGCTGCGAGGCGAGGCGAGGCGGCGAGGGTTTCGCGGCGGCGGCGGCGGCGGCTAAAACCCTAGCCTTTAAAGGGTC]
[-] EMBL C74644 [ AAGACCAGATAA NCGAGGAGT NTGCCCATTGAG TATCGTACAGAAAGCTAAATGCCTCTCAAGCAAAAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATA CTTTGCAACCATCCATGGAACACTAAGGCGAAGATGATTCGTCCATCGCTGCNAGNCA CTAGCGGGGGACGGGGGATGGTTACGGCCTAGAGCTCCAGGGTGAGCTCGAGGCGGTTC CGTCGCGGTTGAGGAAGTGGAGGATGTNGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATGANGTGGGAGCGCAGCTGCTTGTACGCCACCTCCTTGCTCGGCCGCC CGGGAT ]
[-] EMBL AU058189 [ tAAACCAAAATTATTNGATTAAG TTTATAA GTCTGCAAAAAT CTATCCAAACATA NTTTGCAACCATCCATGGAACACTAAGGCGAAGATGATTCGTCCATCGCTGCAAG CAACTAGCGGGGGACGGGGGATGGTTACGGCCTAGAGCTCCAGGGTGAGCTCGAGGCGGNTC CGTCGCGGTTGAGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATGAGGTGGGAGCGCAGCTGCTTGTACGCCACCTCCTTGCTCGGCCGCCGCGGGAT ]
consensusID : consensus_13754#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 306 fasta sequence
[TTTTTTTTTTTTTTTTTTTTAAAAAATAAGCATAATAGGAAACACAATGCCTATTGCAAAGACTGCAAACTTAAAGAACAGATAAGTCGAGGAGTGCTGCCATTGAGTTATCGTACAGAAAGCTAAATGCCTCTCACGCAAAAA-TAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATAGCTTTGCAACCATCCATGGAACACTAAGGCGAAAATGATTCGTCCATCGCTGCAGCACCTAGCGGGGGACGGGGGACGGTTACGGCCTAAAGCTCCCCCCTTGTCTCGTCCTCT]
[+] EMBL CA760496 [TTTTTTTTTTTTTTTTTTTTAAAAAATAAGCATAATAGGAAACACAATGCCTATTGCAAAGACTGCAAACTTAAAGAACAGATAAGTCGAGGAGTGCTGCCATTGAGTTATCGTACAGAAAGCTAAATGCCTCTCACGCAAAAA TAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATAGCTTTGCAACCATCCATGGAACACTAAGGCGAAAATGATTCGTCCATCGCTGCAGCACCTAGCGGGGGACGGGGGACGGTTACGGCCTAAAGCTCCCCCCTTGTCTCGTCCTCT]
[+] EMBL AU225554 [ gccgcTTTTTTTT TAAGCACAATAGGAAACACAATGCCTATTGCAAAGACTGCAAACTTAAAGAACAGATAAGTCGAGGAGTGCTGCCATTGAGTTATCGTACAGAAAGCTAAATGCCTCTCAAGCAAAAATTAATAGGATTAAGTTTTATAAGGTCTGCAAAgcgg ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13754#0 TTTTTTTTTTTTCTAAACTATCCTCAAGTAAAATAGCAGAAATCACTCCATAGCCAGTTA 60
consensus_13754#1 ------------------------------------------------------------
consensus_13754#2 ---------------------------------------TTTTTTTTTTTTTTTTTTTTA 21
consensus_13754#0 AAATATAAGCACAATAGGAAACACAATGCCTATTGCAAAGACTGCAAACTTAAAGAACAG 120
consensus_13754#1 ------------------TTTTTTTTTTNTTNNGGCAAAGACTGCAAACTANAAGAACAG 42
consensus_13754#2 AAAAATAAGCATAATAGGAAACACAATGCCTATTGCAAAGACTGCAAACTTAAAGAACAG 81
* * **************** ********
consensus_13754#0 ATAAGTCGAGGAGTGCTGCCATTGAGTTATCGTACAGAAAGCTAAATGCCTCTCAAGCAA 180
consensus_13754#1 ATAAGTCGAGGAGTGCTGCCATTGAGTTATCGTACAGAAAGCTAAATGCCTCTCAAGCAA 102
consensus_13754#2 ATAAGTCGAGGAGTGCTGCCATTGAGTTATCGTACAGAAAGCTAAATGCCTCTCACGCAA 141
******************************************************* ****
consensus_13754#0 AAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATAGCTTTGCAA 240
consensus_13754#1 AAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATAGCTTTGCAA 162
consensus_13754#2 AAATAATAGGATTAAGTTTTATAAGGTCTGCAAAAATCCTATCCAAACATAGCTTTGCAA 201
************************************************************
consensus_13754#0 CCATCCATGGAACACTAAGGCGAAGATGATTCGTCCATCGCTGCAGCACCTAGCGGGGGA 300
consensus_13754#1 CCATCCATGGAACACTAAGGCGAAGATGATTCGTCCATCGCTGCAGCACCTAGCGGGGGA 222
consensus_13754#2 CCATCCATGGAACACTAAGGCGAAAATGATTCGTCCATCGCTGCAGCACCTAGCGGGGGA 261
************************ ***********************************
consensus_13754#0 CGGGGGATGGTTACGGCCTAGAGCTCCAGGGTGAGCTCGAGGCGGTCCGCGTCGCGGTTG 360
consensus_13754#1 CGGGGGATGGTTACGGCCTAGAGCTCCAGGGTGAGCTCGAGGCGGTCCGCGTCGCGGTTG 282
consensus_13754#2 CGGGGGACGGTTACGGCCTAAAGCTCCCCCCTTGTCTCGTCCTCT--------------- 306
******* ************ ****** * ****
consensus_13754#0 AGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATG 420
consensus_13754#1 AGGAAGTGGAGGATGTAGGGGGCGGCGCGGATGGCGGCAACGCAGGAGGCCATGACGATG 342
consensus_13754#2 ------------------------------------------------------------
consensus_13754#0 AGGTGGGAGCGCAGCTGCTTGTACGCCACCTCCTTGCTCGGCCGCCGCGGGATCGCGCCG 480
consensus_13754#1 AGGTGGGAGCGCAGCTGCTTGTACGCCACCTCCTTGCTCGGCCGCCGCGGGATCGCGCCG 402
consensus_13754#2 ------------------------------------------------------------
consensus_13754#0 AGGAACATCCTGACTCCGCTGCGAGGCGAGGCGAGGCGGCGAGGGTTTCGCGGCGGCGGC 540
consensus_13754#1 AGGAACATCCTGACTCCGCTGCGAGGCGAGGCGAGGCGGCGAGGGTTTCGCGGCGGCGGC 462
consensus_13754#2 ------------------------------------------------------------
consensus_13754#0 GGCGGCGGCTAAAACCCTAGACGGCGACGAGACGAATCTCTCTTGGGGA 589
consensus_13754#1 GGCGGCGGCTAAAACCCTAGCCTTTAAAGGGTC---------------- 495
consensus_13754#2 -------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||