These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1324 fasta sequence [AAGTCGATCGATCGATCGTGACGGCGACGGCGCGAGCCACGACCATGGCCAGGACGATGACGATGAGGGTTTCTTCGCTCCTTGTCGCCGTGGTCCTCCTCGCCGCGCTCTCGTTCCAGGCGTGCAGCGGCCATGGCGGCATCAACGACGGCGACGGGCAGGTCGACGCCCCGGCAACGCCTGCGTCGTCGTCCGGCGTGCGGTCCAAGGGGCTGATCGCCGTGAAGGTGTNGTGCCTGGTGATCCTGCTGGT-GTTCACCTTCGCCGGCGGCGT-CTCCCCCTAC-TTC-TACCGGT-GGAACGA-GAGCTTCCTCCTCCTCG-GCACCCAGT-TC-GCCGCCGGCGTCTTCCTCGGCACCGCGCTGATGCACTTCCTCGCCGACTCCACCTCCACCTTCAAGGGCCTCACTACCAACCAGTACCCGTTCTCCTTCATGCTCACCTGCGTCGGCTTCCTGCTCACCATGCTCAGCGACCTCGTCATCGCCGCCGTCGCGCGGAGGAGCGCCGCCGCCGGCGTTAGCGACAACCAGGTCAGTGAGCAGCAGCAGCGGCAGCAAGCCGAGGGGGCGGTGATGAGCCGCAAGGAGGAGGAGGCGGCGGCGGTGGCGCACCCGGCGATGCTGGTGAGGACATCGTCGTTCGAGGACGCCGTGCTGCTCATCGTCGCGCTCTGTTTCCACTCCGTCTTTGAAGGGATCGCCATTGGTGTCTCAGCGAGCAAGAGCGAGGCGTGGAGGAACCTGTGGACGATCGGGCTGCACAAGATATTCGCGGCGGTGGCGATGGGAATCGCGCTGCTCCGGATGATCCCC-AAGCGCCCCTTCCTCATGACCGTCGTCTACTCCCTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATC-GGCATCGCCATCGACGCCACCTCCCAGGGCCGCGCCGCCGACTGGACCTACGCCATCTCCATGGGCCTCGCCACCGGCGTCTTCATCTACGTCGCCATCAACCACCTCATCGCCAAGGGCTACCGCCCCCACCACCCCACCGCCGCCGACAAGCCGCTCTTCAAGTTCCTCGCCGTCCTCCTCGGCGTCGCCGTCATGGCTGTCGTCATGATCTGGGACTGATCCATCCATCCTAGTATTACACTGCTTCATTTCTTCAATTCCTGCGCCCATGTATGTATGCTTAATTTGGCTTGTTTAATTAACTGTATGTACACATGCTGCATGCATGTTCGATTTCTATCACCCCATTCATTAATCGTGGCCGAAACAGTTCATGTCCACTAATGATTGCTGTATCTATCTACATATATCAAACCGTGAATAAAAGTTGTTATAAAAAA] [+] EMBL AY302058 [AAGTCGATCGATCGATCGTGACGGCGACGGCGCGAGCCACGACCATGGCCAGGACGATGACGATGAGGGTTTCTTCGCTCCTTGTCGCCGTGGTCCTCCTCGCCGCGCTCTCGTTCCAGGCGTGCAGCGGCCATGGCGGCATCAACGACGGCGACGGGCAGGTCGACGCCCCGGCAACGCCTGCGTCGTCGTCCGGCGTGCGGTCCAAGGGGCTGATCGCCGTGAAGGTGTGGTGCCTGGTGATCCTGCTGGT GTTCACCTTCGCCGGCGGCGT CTCCCCCTAC TTC TACCGGT GGAACGA GAGCTTCCTCCTCCTCG GCACCCAGT TC GCCGCCGGCGTCTTCCTCGGCACCGCGCTGATGCACTTCCTCGCCGACTCCACCTCCACCTTCAAGGGCCTCACTACCAACCAGTACCCGTTCTCCTTCATGCTCACCTGCGTCGGCTTCCTGCTCACCATGCTCAGCGACCTCGTCATCGCCGCCGTCGCGCGGAGGAGCGCCGCCGCCGGCGTTAGCGACAACCAGGTCAGTGAGCAGCAGCAGCGGCAGCAAGCCGAGGGGGCGGTGATGAGCCGCAAGGAGGAGGAGGCGGCGGCGGTGGCGCACCCGGCGATGCTGGTGAGGACATCGTCGTTCGAGGACGCCGTGCTGCTCATCGTCGCGCTCTGTTTCCACTCCGTCTTTGAAGGGATCGCCATTGGTGTCTCAGCGAGCAAGAGCGAGGCGTGGAGGAACCTGTGGACGATCGGGCTGCACAAGATATTCGCGGCGGTGGCGATGGGAATCGCGCTGCTCCGGATGATCCCC AAGCGCCCCTTCCTCATGACCGTCGTCTACTCCCTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATC GGCATCGCCATCGACGCCACCTCCCAGGGCCGCGCCGCCGACTGGACCTACGCCATCTCCATGGGCCTCGCCACCGGCGTCTTCATCTACGTCGCCATCAACCACCTCATCGCCAAGGGCTACCGCCCCCACCACCCCACCGCCGCCGACAAGCCGCTCTTCAAGTTCCTCGCCGTCCTCCTCGGCGTCGCCGTCATGGCTGTCGTCATGATCTGGGACTGATCCATCCATCCTAGTATTACACTGCTTCATTTCTTCAATTCCTGCGCCCATGTATGTATGCTTAATTTGGCTTGTTTAATTAACTGTATGTACACATGCTGCATGCATGTTCGATTTCTATCACCCCATTCATTAATCGTGGCCGAAACAGTTCATGTCCACTAATGATTGCTGTATCTATCTACATATATCAAACCGTGAATAAAAGTTGTTATAAAAAA] [+] EMBL OSR06521A [AAGTCGATCGATCGATCGTGACGGCGACGGCGCGAG CACGACCATGGCCAGGACGATGACGATGAGGGTTTCTTCGCTCCTTGTCGCCGTGGTCCTCCTCGCCGCGCTCTCGTTCCAGGCGTGCAGCGGCCATGGCGGCATCAACGACGGCGACGGGCAGGTCGACGCCCCGGCAACGCCTGCGTCGTCGTCCGGCGTGCGGTCCAAGGGGCTGATCGCCGTGAAGGTGTNGTGCCTGGTGATCCTGCTGGT GTTCACCTTNGCCGGCGG GT CTCCCCCTAC TTC TACCGGT GGAACGA GAGCTTCCTCCTCCTCG GCACCCAGT TC GCCGCCGG GTCTTCCTCGGCACCNCGCTGATGCACTTCCT ] [+] EMBL AU032374 [ ATCGATCGATCGTGACGGCGACGGCGCGA CCACGACCATGGCCAGGACGATGACGATGAGGGTTTCTTCGCTCCTTGTCGCCGTGGTCCTCCTCGCCGCGCTCTCGTTCCAGGCGTGCAGCGGCCATGGCGGCATCAACGACGGCGACGGGCAGGTCGACGCCCCGGCAACGCCTGCGTCGTCGTCCGGCGTGCGGTCCAAGGGGCTGATCGCCGTGAAGGTGTNGTGCCTGGTGATCCTGCTGGTGGTTCACCTTCGCCGGCGGCGTGCTCCCCCTACTTTCTTACCGGTGGGAACGAGGAGCTTCCTCCTCCTCGTGCACCCAGTNTCTGCCGCCGGCG ] [+] EMBL AU164595 [ TCGCGNTGCTCCGGATGATCCCC AAGCGCCCCTTCCTCATGACCGTCGTCTACTCCCTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATCGGGCATCGCCATCGACGCCACCTCCCAGGGCCGCGCCGCCGACTGGACCTACGCCATCTCCATGGGCCTCGCCACCGGCGTCTTCATCTACGTCGCCATCAACCACCTCATCGCCAAGGGCTACCGCCCCCACCACCCCACCGCCGCCGACAAGCCGCTCTTCAAGTTCCTCGCCGTCCTCCTCGGCGTCGCCGTCATGGCTGTCGTCATGATCTGGGACTGATCCATCCATCCTAGTATTACACTGCTTCATTTCTTCAATTCCTGCGCCCATGTATGTATGCTTAATTTGGCTTGTTTAATTAACTGTATGTACACATGCTGCATGCATGTTCGATTTCTATCACCCCATTCATTAATCGTGGCCGAAACAGTTCATGTCCACTAATGATTGCTGTATCTATCTACATATATCAAACCGTGAATAAAAGTTGTTATAAAAAA] [+] EMBL AU032375 [ TGCNCCGGATGATCCCCAAAGCGCCCNTTCCTCATGACCGTNGTCTACTCCCTCGCNTTCGCCGTCTCCAGCCCCGTCGGCGTCGNCATC GGCATCGCCATCGACGCCACNTCCCAGGGCCGCGCCGCCGACTGGACCTACGCCATCTCCATGGGCCTCGCCACCGGCGTCTTCATCTACGTCGCCATCAACCACCTCATCGCCAA GGCTACCGCCCCCACCACCCCACCGCCGCCGACAAGCCGNTNTTCAAGTTCCTCGCCGTCCTCCTCGGCGTCGCCGTCATGGCTGTCGTCATGATCTGGGACTGATCCATCCATCCTAGTATTACACTGCTTCATTTCTTCAATTCCTGCGCCCATGTATGTATGCTTAATTTGGCTTGTTTAATTAACTGTATGTACACATGCTGNATGCATGTTCGATTTCTATCNCCCCATTCATTAATCGTGGCCGAAACAGTTCATGTCCACTAATGATTGCTGTATCTATCTACATATATCAAACCGTGAATAAAAGTTGTTATAAAAA ] consensusID : consensus_13771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1314 fasta sequence [GCGCACCCGTCATCGGTCGAACACCACACCTGCGTCCATGGCGGGAGGCAGGGGAGCCCGCGCCAGCCTCCACCTCCACCTCGCCTGGCTCTGCGCCTTCGCGACCACCGTTTGGGCGCATGGCGGTGGCGGCGGCGGGGGCGATTCTGACGCCGACGCCGACGGCGGCGGCGAGGGGAAGCCGGACCTGCGGGCGCGGGGGCTGGTGGCGGCGAAGCTGTGGTGCTTGGCGGTGGTGTTCGCCGGGACGCTGGCCGGCGGCGTGTCCCCCTACTTCATGCGGTGGAACGATGCGTTCCTGGCGCTGGGCACGCAGTTCGCGGGGGGAGTCTTCCTCGGCACCGCCATGATGCACTTCCTCGCCGACGCCAACGAGACTTTCGCCGACCTCCTCCCCGGCACCGCCTACCCCTTCGCGTTCATGCTCGCCTGCGCCGGCTACGTCCTCACCATGCTCGCCGACTGCGCCATCTCCTTCGTCGTCGCCCGCGGCGGCGGCCGGACCGAACCCGCCGCCGCCGCCGGTGCAGGGCTGGAGGAGGGTAAGCTGAGCAGCACAAATGGCAACGCCTCTGACCCACCAGCAGCTGATGCGGCGGCGCAAGACCACTCCGTGGCGTCGATGCTGCGGAACGCGAGCACGCTCGGCGACAGCGTGCTGCTCATCGCCGCGCTCTGCTTCCACTCCGTCTTCGAGGGCATCGCCATCGGAGTCGCCGAGACGAAGGCTGACGCATGGAAGGCGTTGTGGACGATCAGCCTGCACAAGATCTTCGCGGCCATCGCCATGGGCATCGCGCTGCTCCGGATGCTGCCGGACCGGCCGTTCCTCTCCTGCTTCGGCTACGCCTTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATCGGCATCGTCATCGACGCCACCACGCAGGGCCGGGTGGCCGACTGGATCTTCGCCGTCTCCATGGGCCTCGCCACCGGCATCTTCATCTACGTCTCCATCAACCACCTCCTCTCCAAGGGCTACACCCCGCTGAGGCCCGTCGCCGCCGACACGCCGGCGGGGAGGCTGCTCGCCGTCGTCCTCGGCGTCGCCGTCATCGCCGTCGTCATGATCTGGGACACCTGATGCCGCTCATGATTTCGGACGTTTGTTGGTTCTTGCAGGAATGTGTGTGTGTAGTAAGTTCGTCGTGAAATTAGCATGTGTAAAGTTTGTGCCACTCCAACCAAAGTTTCAGGATTATTTATAGCTTTGAATATATCATCAACGCTGGGGCACCATTGTTTTTGTTTCCATGGATTTTGGGGGTAAGAAATTGACCAAAA] [+] EMBL AK121551 [GCGCACCCGTCATCGGTCGAACACCACACCTGCGTCCATGGCGGGAGGCAGGGGAGCCCGCGCCAGCCTCCACCTCCACCTCGCCTGGCTCTGCGCCTTCGCGACCACCGTTTGGGCGCATGGCGGTGGCGGCGGCGGGGGCGATTCTGACGCCGACGCCGACGGCGGCGGCGAGGGGAAGCCGGACCTGCGGGCGCGGGGGCTGGTGGCGGCGAAGCTGTGGTGCTTGGCGGTGGTGTTCGCCGGGACGCTGGCCGGCGGCGTGTCCCCCTACTTCATGCGGTGGAACGATGCGTTCCTGGCGCTGGGCACGCAGTTCGCGGGGGGAGTCTTCCTCGGCACCGCCATGATGCACTTCCTCGCCGACGCCAACGAGACTTTCGCCGACCTCCTCCCCGGCACCGCCTACCCCTTCGCGTTCATGCTCGCCTGCGCCGGCTACGTCCTCACCATGCTCGCCGACTGCGCCATCTCCTTCGTCGTCGCCCGCGGCGGCGGCCGGACCGAACCCGCCGCCGCCGCCGGTGCAGGGCTGGAGGAGGGTAAGCTGAGCAGCACAAATGGCAACGCCTCTGACCCACCAGCAGCTGATGCGGCGGCGCAAGACCACTCCGTGGCGTCGATGCTGCGGAACGCGAGCACGCTCGGCGACAGCGTGCTGCTCATCGCCGCGCTCTGCTTCCACTCCGTCTTCGAGGGCATCGCCATCGGAGTCGCCGAGACGAAGGCTGACGCATGGAAGGCGTTGTGGACGATCAGCCTGCACAAGATCTTCGCGGCCATCGCCATGGGCATCGCGCTGCTCCGGATGCTGCCGGACCGGCCGTTCCTCTCCTGCTTCGGCTACGCCTTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATCGGCATCGTCATCGACGCCACCACGCAGGGCCGGGTGGCCGACTGGATCTTCGCCGTCTCCATGGGCCTCGCCACCGGCATCTTCATCTACGTCTCCATCAACCACCTCCTCTCCAAGGGCTACACCCCGCTGAGGCCCGTCGCCGCCGACACGCCGGCGGGGAGGCTGCTCGCCGTCGTCCTCGGCGTCGCCGTCATCGCCGTCGTCATGATCTGGGACACCTGATGCCGCTCATGATTTCGGACGTTTGTTGGTTCTTGCAGGAATGTGTGTGTGTAGTAAGTTCGTCGTGAAATTAGCATGTGTAAAGTTTGTGCCACTCCAACCAAAGTTTCAGGATTATTTATAGCTTTGAATATATCATCAACGCTGGGGCACCATTGTTTTTGTTTCCATGGATTTTGGGGGTAAGAAATTGACCAAAA] consensusID : consensus_13771#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1279 fasta sequence [GTCGAACACCACACCTGCGTCCATGGCGGGAGGCAGGGGAGCCCGCGCCAGCCTCCACCTCCACCTCGCCTGGCTCTGCGCCTTCGCGACCACCGCGTGGGCGC-ATGGCGGTGGCGGCGGCGGGGGCGATTCTGACGCCGACGCCGACGGCGGCGG-CGAGGGGAAGCCGGACCTGCGGGCGCGGGGGCTGGTGGCGGCGAAGCTGTGGTGCTTGGCGGTGGTGTTCGCCGGGACGCTGGCCGGCGGCGTGTCCCCCTACTTCATGCGGTGGAACGATGCGTTCCTGGCGCTGGGCACGCAGTTCGCGGGGGGAGTCTTCCTCGGCACCGCCATGATGCACTTCCTCGCCGACGCCAACGAGACTTTCGCCGACCTCCTCCCCGGCACCGCCTACCCCTTCGCGTTCATGCTCGCCTGCGCCGGCTACGTCCTCACCATGCTCGCCGACTGCGCCATCTCCTTCGTCGTCGCCCGCGGCGGCGGCCGGACCGAACCCGCCGCCGCCGCCGGTGCAGGGCTGGAGGAGGGTAAGCTGAGCAGCACAAATGGCAACGCCTCTGACCCACCAGCAGCTGATGCGGCGGCGCAAGACCACTCCGTGGCGTCGATGCTGCGGAACGCGAGCACGCTCGGCGACAGCGTGCTGCTCATCGCCGCGCTCTGCTTCCAC-TCCGTCTT--CGA-GGGC-ATCGCCATCGG--AGTCGCCGAGACGAAGGCT-GACGCATGGAAGGCGC-TGTGGACGATCAGCCTGCAC-AAGATCTTCGCGGCCATCG-CCA-TGGGCATCGCGCTGCTCCGGATGCTGCCGGACCGGCCGTTCCTCTCCTGCTTCGGCTAC-GCCTTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATCGGCATCGTCATCGACGCCACCACGCAGGGCCGGGTGGCCGA-CTGGATCTTCGCCGTCTCCATGGGCCTCGCCACCGGCATCTTCATCTACGTCTCCATC-AACCACCTCCTCTCCAAGGGCTACACCCCGCTGAGGCCCGTCGCCGCCGACACGCCGGCGGGGAGGCTGCTCGCCGTCGTCCTCGGCGTCGCCGTCATCGCCGTCGTCAT-GATCTGGGACACCTGATGCCGCTCATGATTTCGGACGTTTGTTGGTTCTTG-CAGGAATGTGTGTGTGTAGTAAGTTCGTCGTGAAATTAGCATGTGTAAAGT-TTGTGCCACTCCAACCAAAGTTTCA-GGATTATTTATAGCTTTGAATATATCATCAACGCTGGGGC-CCCAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AY302059 [GTCGAACACCACACCTGCGTCCATGGCGGGAGGCAGGGGAGCCCGCGCCAGCCTCCACCTCCACCTCGCCTGGCTCTGCGCCTTCGCGACCACCGCGTGGGCGC ATGGCGGTGGCGGCGGCGGGGGCGATTCTGACGCCGACGCCGACGGCGGCGG CGAGGGGAAGCCGGACCTGCGGGCGCGGGGGCTGGTGGCGGCGAAGCTGTGGTGCTTGGCGGTGGTGTTCGCCGGGACGCTGGCCGGCGGCGTGTCCCCCTACTTCATGCGGTGGAACGATGCGTTCCTGGCGCTGGGCACGCAGTTCGCGGGGGGAGTCTTCCTCGGCACCGCCATGATGCACTTCCTCGCCGACGCCAACGAGACTTTCGCCGACCTCCTCCCCGGCACCGCCTACCCCTTCGCGTTCATGCTCGCCTGCGCCGGCTACGTCCTCACCATGCTCGCCGACTGCGCCATCTCCTTCGTCGTCGCCCGCGGCGGCGGCCGGACCGAACCCGCCGCCGCCGCCGGTGCAGGGCTGGAGGAGGGTAAGCTGAGCAGCACAAATGGCAACGCCTCTGACCCACCAGCAGCTGATGCGGCGGCGCAAGACCACTCCGTGGCGTCGATGCTGCGGAACGCGAGCACGCTCGGCGACAGCGTGCTGCTCATCGCCGCGCTCTGCTTCCAC TCCGTCTT CGA GGGC ATCGCCATCGG AGTCGCCGAGACGAAGGCT GACGCATGGAAGGCGC TGTGGACGATCAGCCTGCAC AAGATCTTCGCGGCCATCG CCA TGGGCATCGCGCTGCTCCGGATGCTGCCGGACCGGCCGTTCCTCTCCTGCTTCGGCTAC GCCTTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATCGGCATCGTCATCGACGCCACCACGCAGGGCCGGGTGGCCGA CTGGATCTTCGCCGTCTCCATGGGCCTCGCCACCGGCATCTTCATCTACGTCTCCATC AACCACCTCCTCTCCAAGGGCTACACCCCGCTGAGGCCCGTCGCCGCCGACACGCCGGCGGGGAGGCTGCTCGCCGTCGTCCTCGGCGTCGCCGTCATCGCCGTCGTCAT GATTTGGGACACCTAATGCCGCTCATGATTTCGGACGTTTGTTGGTTCTTG CAGGAATGTGTGTGTGTAGTAAGTTCGTCGTGAAATTAGCATGTGTAAAGT TTGTGCCACTCCAACCAAAGTTTCA GGATTATTTATAGCTTTGAATATATCATCAACGCTGGGGC CCCAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB641993 [GTCGAACACCACACCTGCGTCCATGGCGGGAGGCAGGGGAGCCCGCGCCAGCCTCCACCTCCACCTCGCCTGGCTCTGCGCCTTCGCGACCACCGCGTGGGCGC ATGGCGGTGGCGGCGGCGGGGGCGATTCTGACGCCGACGCCGACGGCGGCGG CGAGGGGAAGCCGGACCTGCGGGCGCGGGGGCTGGTGGCGGCGAAGCTGTGGTGCTTGGCGGTGGTGTTCGCCGGGACGCTGGCCGGCGGCGTGTCCCCCTACTTCATGCGGTGGAACGATGCGTTCCTGGCGCTGGGCACGCAGTTCGCGGGGGGAGTCTTCCTCGGCACCGCCATGATGCACTTCCTCGCCGACGCCAACGAGACTTTCGCCGACCTCCTCCCCGGCACCGCCTACCCCTTCGCGTTCATGCTCGCCTGCGCCGGCTACGTCCTCACCATGCTCGCCGACTGCGCCATCTCCTTCGTCGTCGCCCGCGGCGGCGGCCGGACCGAACCCGCCGCCGCCGCCGGTGCAGGGCTGGAGGAGGGTAAGCTGAGCAGCACAAATGGCAACGCCTCTGACCCACCAGCAGCTGATGCGGCGGCGCAAGACCACTCCGTGGCGTCGATGCTGCGGAACGCGAGCACGCTCGGCGACAGCGTGCTGCTCATCGCCGCGCTCTGCTTCCAC TCCGTCTT CGA GG ] [+] EMBL OSS13705A [GTCGAACACCACACCTGCGTCCATGGCGGGAGGCAGGGGAGCCCGCGCCA NCTCCACCTCCACCTCGCCTGGCTCTGCGCCTTCGCGACCACCGCGTGGGCGCAATGGCGGTGGCGGCGGCGGGGGCGATTCTGACGNCGACGCCGAC GNGGCGGATGNGNGGAAGCCGGACCTGCGGGCGCGNGGGCTGGTGGCGGCGAAG TGTGGTGCTTGGCGGTGGTGTTCGCCGGGACGCTGGCCGGCGGCGTGTCCCCCTACTTCATGCGGTGGAACGATGCGTTCCTGGCGCTGGG ] [+] EMBL BQ907959 [ tTCTGTTCCCACTTCCNTCTTTGCGATGGGCAATCGCCATCGGGAATTCCCCGAGACGAA GCTAGACGCATGGAAGGCGCATGTGGACGATCAGCCTGCACAAAGATCTTCGCGCCCATCG CCA TGGGCATCGCGCTGCTCCGGATGCTGCCGGACCGGCCGTTCCTCTCCTGCTTCGGCTACGGCCTTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATCGGCATCGTCATCGACGCCACCACGCA GGCCGGGT GCCGATCTGGATCTTCGCCGTCTCCATGGGCCTCGCCACCGGCATCTTCATCTACGTCTCCATC AACCACCTCCTCTCCAAGGGCTACACCCCGCTGAGGCCCGTCGCCGCCGACACGCCGGCGGGGAGGCTGCTCGCCGTCGTCCTCGGCGTCGCCGTCATCGCCGTCGTCAT GATCTGGGACACCTGATTCCGCTCATGATTTCGGACGTTTGTTGGTTCTTGCCAGGAATGTGTGTGTGTAGTAAGTTCGTCGTGAAATTAGCATGTGTAAAGTCTTGTGCCACTCCAACCAAAGTTTCACGGATTATTTATAGCTTTGAATATATCATCAAaaaa ] [+] EMBL CF325501 [ gCTT CGA GGGC ATCGCCATCGG AGTCGCCGAGACGAAGGCT GACGCATGGAAGGCGC TGTGGACGATCAGCCTGCAC AAGATCTTCGCGGCCATCG CCA TGGGCATCGCGCTGCTCCGGATGCTGCCGGACCGGCCGTTCCTCTCCTGCTTCGGCTAC GCCTTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATCGGCATCGTCATCGACGCCACCACGCAGGGCCGGGTGGCCGA CTGGATCTTCGCCGTCTCCATGGGCCTCGCCACCGGCATCTTCATCTACGTCTCCATC AACCACCTCCTCTCCAAGGGCTACACCCCGCTGAGGCCCGTC ] [+] EMBL BQ909168 [ gacTCAGCCTGCAC AAGATCTTCGCGGCCATCGCCCACTGGGCATCGCGCTGCTCCGGATGCTGCCGGACCGGCCGTTCCTCTCCTGCTTCGGCTAC GCCTTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATCGGCATCGTCATCGACGCCACCACGCAGGGCCGGGTGGCCGA CTGGATCTTCGCCGTCTCCATGGGCCTCGCCACCGGCATCTTCATCTACGTCTCCATCTAACCACCTCCTCTCCAAGGGCTACACCCCGCTGAGGCCCGTCGCCGCCGACACGCCGGCGGGGAGGCTGCTCGCCGTCGTCCTCGGCGTCGCCGTCATCGCCGTCGTCATCGATCTGGGACACCTGATNCCGCTCATGATTTCGGACGTTTGTTGGTTCTTG CAGGAATGTGTGTGTGTAGTAAGTTCGTCGTGAAATTAGCATGTGTAAAGT TTGTGCCACTCCAACC AAGTTTCA GGATTATTTATAGCTTTGAATATATCATCAACGCTGGGGCACCCAAAAAA ] consensusID : consensus_13771#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [NGGAAANAAANCNCCNCNANCNTNACNTNANNNANNCTAAAAACAACNNNACNCTATNNCNNACATNTNGCGGCNAAAAAACANGTGNNANTTTNAAACAAANNTGACAANTTTTAACCGTNNTCNNCTTTNAGNACCNAGAATCCAAAAAANTCCTTNANCCNNNAAAAACTTNAAAAATTNGNGCCATCCCNGGGAAANNCCTTTNCGNATTNTCCGGACCGNCATTCNNTATNCTTGTNGGTAANCTTACCTTNGCCGTTTACAACCCCTTTCGGGTTCGGANCGGATNTTAANAGACGCCANCCACGCAGGCCGGNTGCCGANTGGANTTTCNCCGTNTCCATGGCCTTCGCNACGGGCATNTTAATNNACGTNTCCATCAACCCACTTCTTNTCCAAGGGTTACACCCCCGNTGAGNCCCCGTCGCCGCCGACACGCCGGCGGGNAGGCTGCTCGCCGTCGTCCCTTNGCGTCGCCGTCATCGCCGTCGTCATGATCTGGGACACCTGATGCCGCTCATGATTTCGGACGTTTGTTGGTTCTTGCAGGAATGTGTGTGTGTAGTAAGTTCGTCGTGAAATTAGCATGTGTAAAGTTTGTGCCANTCCAACCAAAGTTTCAGGATTATTTATAGCTTTGAATATATCATCAACGCTGGGGCACCAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU032700 [NGGAAANAAANCNCCNCNANCNTNACNTNANNNANNCTAAAAACAACNNNACNCTATNNCNNACATNTNGCGGCNAAAAAACANGTGNNANTTTNAAACAAANNTGACAANTTTTAACCGTNNTCNNCTTTNAGNACCNAGAATCCAAAAAANTCCTTNANCCNNNAAAAACTTNAAAAATTNGNGCCATCCCNGGGAAANNCCTTTNCGNATTNTCCGGACCGNCATTCNNTATNCTTGTNGGTAANCTTACCTTNGCCGTTTACAACCCCTTTCGGGTTCGGANCGGATNTTAANAGACGCCANCCACGCAGGCCGGNTGCCGANTGGANTTTCNCCGTNTCCATGGCCTTCGCNACGGGCATNTTAATNNACGTNTCCATCAACCCACTTCTTNTCCAAGGGTTACACCCCCGNTGAGNCCCCGTCGCCGCCGACACGCCGGCGGGNAGGCTGCTCGCCGTCGTCCCTTNGCGTCGCCGTCATCGCCGTCGTCATGATCTGGGACACCTGATGCCGCTCATGATTTCGGACGTTTGTTGGTTCTTGCAGGAATGTGTGTGTGTAGTAAGTTCGTCGTGAAATTAGCATGTGTAAAGTTTGTGCCANTCCAACCAAAGTTTCAGGATTATTTATAGCTTTGAATATATCATCAACGCTGGGGCACCAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13771#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence [GGTGCCGACTGGATCTTCCCGTCTCCAGTGGCCTCGCCACCGGCATCTTCATCTACGTCGTCCAATCGACCAGCCTCCTCTCCAAGGCTACACCCCGCTGAGGCCCGTCGCCGCCGACACGCCGCGGGGAGCTGCTCGCCGTCGTCCTCGGCGTCGCCGTCATCGCCGTCGTCATGATCTGGGACACCCTGATGCCGCTCATGATTTCGGACGTTTGTTGGTTCTTGCAGGAATGTGTGTGTGTAGTAAGTTCGTCGTGAAATTAGCATGTGTAAAGTTTGTGCCACTCCAACCAAAGTTTCAGGATTATTTATAGCTTTGAATATATCATCAACGCTGGGGCACCATTGTTTTTGTTTCAAAAAAAAAA] [+] EMBL BI812100 [GGTGCCGACTGGATCTTCCCGTCTCCAGTGGCCTCGCCACCGGCATCTTCATCTACGTCGTCCAATCGACCAGCCTCCTCTCCAAGGCTACACCCCGCTGAGGCCCGTCGCCGCCGACACGCCGCGGGGAGCTGCTCGCCGTCGTCCTCGGCGTCGCCGTCATCGCCGTCGTCATGATCTGGGACACCCTGATGCCGCTCATGATTTCGGACGTTTGTTGGTTCTTGCAGGAATGTGTGTGTGTAGTAAGTTCGTCGTGAAATTAGCATGTGTAAAGTTTGTGCCACTCCAACCAAAGTTTCAGGATTATTTATAGCTTTGAATATATCATCAACGCTGGGGCACCATTGTTTTTGTTTCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13771#3 ------------------------------------------------------------ consensus_13771#4 ------------------------------------------------------------ consensus_13771#1 ----------GCGCACCCGTCATCGGTCGAACACCACACCTGCGTCCATGGCGGGAGGCA 50 consensus_13771#2 -------------------------GTCGAACACCACACCTGCGTCCATGGCGGGAGGCA 35 consensus_13771#0 AAGTCGATCGATCGATCGTGACGGCGACGGCGCGAGCCACGACCATGGCCAGGACGATGA 60 consensus_13771#3 ------------------------------------------------------------ consensus_13771#4 ------------------------------------------------------------ consensus_13771#1 GGGGAGCCCGCGCCAGCCTCCACCTCCACCTCGCCTGGCTCTGCGCCTTCGCGACCACCG 110 consensus_13771#2 GGGGAGCCCGCGCCAGCCTCCACCTCCACCTCGCCTGGCTCTGCGCCTTCGCGACCACCG 95 consensus_13771#0 CGATGAGGGTTTCTTCGCTCCTTGTCGCCGTGGTCCTCCTCGCCGCGCTCTCGTTCCAGG 120 consensus_13771#3 ------------------------------------------------------------ consensus_13771#4 ------------------------------------------------------------ consensus_13771#1 TTTGGGCGCATGGCGGTGGCGGCGGCGGGGGCGATTCTGACGCCGACGCCGACGGCGGCG 170 consensus_13771#2 CGTGGGCGCATGGCGGTGGCGGCGGCGGGGGCGATTCTGACGCCGACGCCGACGGCGGCG 155 consensus_13771#0 CGTGCAGCGGCCATGGCGGCATCAACGACGGCGACGGGCAGGTCGACGCCCCGGCAACGC 180 consensus_13771#3 ------------------------------------------------------------ consensus_13771#4 ------------------------------------------------------------ consensus_13771#1 GCGAGGGGAAGCCGGACCTGCGGGCGCGGGGGCTGGTGGCGGCGAAGCTGTGGTGCTTGG 230 consensus_13771#2 GCGAGGGGAAGCCGGACCTGCGGGCGCGGGGGCTGGTGGCGGCGAAGCTGTGGTGCTTGG 215 consensus_13771#0 CTGCGTCGTCGTCCGGCGTGCGGTCCAAGGGGCTGATCGCCGTGAAGGTGTNGTGCCTGG 240 consensus_13771#3 ------------------------------------------------------------ consensus_13771#4 ------------------------------------------------------------ consensus_13771#1 CGGTGGTGTTCGCCGGGACGCTGGCCGGCGGCGTGTCCCCCTACTTCATGCGGTGGAACG 290 consensus_13771#2 CGGTGGTGTTCGCCGGGACGCTGGCCGGCGGCGTGTCCCCCTACTTCATGCGGTGGAACG 275 consensus_13771#0 TGATCCTGCTGGTGTTCACCTTCGCCGGCGGCGTCTCCCCCTACTTCTACCGGTGGAACG 300 consensus_13771#3 ------------------------------------------------------------ consensus_13771#4 ------------------------------------------------------------ consensus_13771#1 ATGCGTTCCTGGCGCTGGGCACGCAGTTCGCGGGGGGAGTCTTCCTCGGCACCGCCATGA 350 consensus_13771#2 ATGCGTTCCTGGCGCTGGGCACGCAGTTCGCGGGGGGAGTCTTCCTCGGCACCGCCATGA 335 consensus_13771#0 AGAGCTTCCTCCTCCTCGGCACCCAGTTCGCCGCCGGCGTCTTCCTCGGCACCGCGCTGA 360 consensus_13771#3 ------------------------------------------------------------ consensus_13771#4 ------------------------------------------------------------ consensus_13771#1 TGCACTTCCTCGCCGACGCCAACGAGACTTTCGCCGACCTCCTCCCCGGCACCGCCTACC 410 consensus_13771#2 TGCACTTCCTCGCCGACGCCAACGAGACTTTCGCCGACCTCCTCCCCGGCACCGCCTACC 395 consensus_13771#0 TGCACTTCCTCGCCGACTCCACCTCCACCTTCAAGGGCCTCACTACCAACCAG---TACC 417 consensus_13771#3 ------------------------------------------------------------ consensus_13771#4 ------------------------------------------------------------ consensus_13771#1 CCTTCGCGTTCATGCTCGCCTGCGCCGGCTACGTCCTCACCATGCTCGCCGACTGCGCCA 470 consensus_13771#2 CCTTCGCGTTCATGCTCGCCTGCGCCGGCTACGTCCTCACCATGCTCGCCGACTGCGCCA 455 consensus_13771#0 CGTTCTCCTTCATGCTCACCTGCGTCGGCTTCCTGCTCACCATGCTCAGCGACCTCGTCA 477 consensus_13771#3 ------------------------------------------------------------ consensus_13771#4 ------------------------------------------------------------ consensus_13771#1 TCTCCTTCGTCGTCGCCCGCGGCGGCGGCCGGACCGAACCCGCCGCCGCCGCCGGTGCAG 530 consensus_13771#2 TCTCCTTCGTCGTCGCCCGCGGCGGCGGCCGGACCGAACCCGCCGCCGCCGCCGGTGCAG 515 consensus_13771#0 TCGCCGCCGTCGCG---------------CGGAGGAGCGCCGCCGCCGGCGTTAGCGACA 522 consensus_13771#3 ------------------------------------------------------------ consensus_13771#4 ------------------------------------------------------------ consensus_13771#1 GGCTGGAGGAGGGTAAGCTGAGCAGCACAAATGGCAACGCCTCTGACCCACCAGCAGCTG 590 consensus_13771#2 GGCTGGAGGAGGGTAAGCTGAGCAGCACAAATGGCAACGCCTCTGACCCACCAGCAGCTG 575 consensus_13771#0 ACCAGGTCAGTGAGCAGCAGCAGCGGCAGCAAGCCGAGGGGGCGGTGATGAGCCGCAAGG 582 consensus_13771#3 --------NGGAAANAAANCNCCNCNANCNTNACNTNANNNANNCTAAAAACAACNNNAC 52 consensus_13771#4 ------------------------------------------------------------ consensus_13771#1 ATGCGGCGGCGCAAGACCACTCCGTGGCGTCGATGCTGCGGAACGCGAGCACGCTCGGCG 650 consensus_13771#2 ATGCGGCGGCGCAAGACCACTCCGTGGCGTCGATGCTGCGGAACGCGAGCACGCTCGGCG 635 consensus_13771#0 AGGAGGAGGCGGCGGCGGTGGCGCACCCGGCGATGCTGGTGAGGACATCGTCGTTCGAGG 642 consensus_13771#3 NCTATNNCNNACATNTNGCGGCNAAAAAACANGTGNNANTTTNAAACAAANNTGACAANT 112 consensus_13771#4 ------------------------------------------------------------ consensus_13771#1 ACAGCGTGCTGCTCATCGCCGCGCTCTGCTTCCACTCCGTCTTCGAGGGCATCGCCATCG 710 consensus_13771#2 ACAGCGTGCTGCTCATCGCCGCGCTCTGCTTCCACTCCGTCTTCGAGGGCATCGCCATCG 695 consensus_13771#0 ACGCCGTGCTGCTCATCGTCGCGCTCTGTTTCCACTCCGTCTTTGAAGGGATCGCCATTG 702 consensus_13771#3 TTTAACCGTNNTCNNCTTTNAGNACCNAGAATCCAAAAAANTCCTTNANCCNNNA-AAAA 171 consensus_13771#4 ------------------------------------------------------------ consensus_13771#1 GAGTCGCCGAGACGAAGGCTGACGCATGGAAGGCGTTGTGGACGATCAGCCTGCACAAGA 770 consensus_13771#2 GAGTCGCCGAGACGAAGGCTGACGCATGGAAGGCGCTGTGGACGATCAGCCTGCACAAGA 755 consensus_13771#0 GTGTCTCAGCGAGCAAGAGCGAGGCGTGGAGGAACCTGTGGACGATCGGGCTGCACAAGA 762 consensus_13771#3 CTTNAAAAATTNGNGCCATCCCNGGGAAANNCCTTTNCGNATTNTCCGGACCGNCATTCN 231 consensus_13771#4 ------------------------------------------------------------ consensus_13771#1 TCTTCGCGGCCATCGCCATGGGCATCGCGCTGCTCCGGATGCTGCCGGACCGGCCGTTCC 830 consensus_13771#2 TCTTCGCGGCCATCGCCATGGGCATCGCGCTGCTCCGGATGCTGCCGGACCGGCCGTTCC 815 consensus_13771#0 TATTCGCGGCGGTGGCGATGGGAATCGCGCTGCTCCGGATGATCCCCAAGCGCCCCTTCC 822 consensus_13771#3 NTATNCTTGTNGGTAAN---CTTACCTTNGCCGTTTACAACCCCTTTCGGGTTCGGANCG 288 consensus_13771#4 ------------------------------------------------------------ consensus_13771#1 TCTCCTGCTTCGGCTACGCCTTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATCG 890 consensus_13771#2 TCTCCTGCTTCGGCTACGCCTTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATCG 875 consensus_13771#0 TCATGACCGTCGTCTACTCCCTCGCCTTCGCCGTCTCCAGCCCCGTCGGCGTCGGCATCG 882 consensus_13771#3 G-ATNTTAANAGACGCCANCCACGCAGGCCGGNTG-CCGANTGGANTTTCNCCGTNTCCA 346 consensus_13771#4 -------------------------------GGTG-CCGACTGGATCTTCCC-GTCTCCA 27 consensus_13771#1 GCATCGTCATCGACGCCACCACGCAGGGCCGGGTGGCCGACTGGATCTTCGCCGTCTCCA 950 consensus_13771#2 GCATCGTCATCGACGCCACCACGCAGGGCCGGGTGGCCGACTGGATCTTCGCCGTCTCCA 935 consensus_13771#0 GCATCGCCATCGACGCCACCTCCCAGGGCCGCGCCGCCGACTGGACCTACGCCATCTCCA 942 **** **** * * * * **** consensus_13771#3 TGGCCTTCGCNACGGGCATNTTAATNNACGTNTCC--ATCAACCCACTTCTTNTCCAAGG 404 consensus_13771#4 GTGGCCTCGCCACCGGCATCTTCATCTACGTCGTCCAATCGACCAGCCTCCTCTCCAAGG 87 consensus_13771#1 TGGGCCTCGCCACCGGCATCTTCATCTACGTCTCC--ATCAACC-ACCTCCTCTCCAAGG 1007 consensus_13771#2 TGGGCCTCGCCACCGGCATCTTCATCTACGTCTCC--ATCAACC-ACCTCCTCTCCAAGG 992 consensus_13771#0 TGGGCCTCGCCACCGGCGTCTTCATCTACGTCGCC--ATCAACC-ACCTCATCGCCAAGG 999 * * **** ** *** * ** ** **** * *** *** * ** * ****** consensus_13771#3 GTTACACCCCCGNTGAGNCCCCGTCGCCGCCGACACGCCGGCGGGNAGGCTGCTCGCCGT 464 consensus_13771#4 -CTACACCCC-GCTGAGGCCC-GTCGCCGCCGACACGCCG-CGGGGAG-CTGCTCGCCGT 142 consensus_13771#1 GCTACACCCC-GCTGAGGCCC-GTCGCCGCCGACACGCCGGCGGGGAGGCTGCTCGCCGT 1065 consensus_13771#2 GCTACACCCC-GCTGAGGCCC-GTCGCCGCCGACACGCCGGCGGGGAGGCTGCTCGCCGT 1050 consensus_13771#0 GCTACCGCCC--CCACCACCCCACCGCCGCCGACAAGCCGCTCTTCAAGTTCCTCGCCGT 1057 *** *** *** *********** **** * * ******** consensus_13771#3 CGTCCCTTNGCGTCGCCGTCATCGCCGTCGTCATGATCTGGGACACC-TGATGCCGCTCA 523 consensus_13771#4 CGTCC-TCGGCGTCGCCGTCATCGCCGTCGTCATGATCTGGGACACCCTGATGCCGCTCA 201 consensus_13771#1 CGTCC-TCGGCGTCGCCGTCATCGCCGTCGTCATGATCTGGGACACC-TGATGCCGCTCA 1123 consensus_13771#2 CGTCC-TCGGCGTCGCCGTCATCGCCGTCGTCATGATCTGGGACACC-TGATGCCGCTCA 1108 consensus_13771#0 CCTCC-TCGGCGTCGCCGTCATGGCTGTCGTCATGATCTGGGACTGATCCATCCATCCTA 1116 * *** * ************* ** ****************** ** * * * consensus_13771#3 TGATTTCGGACGTTTGTT-----GGTTCTTGCAGGAATGTGTGTGTGTAGTAAGTTCG-T 577 consensus_13771#4 TGATTTCGGACGTTTGTT-----GGTTCTTGCAGGAATGTGTGTGTGTAGTAAGTTCG-T 255 consensus_13771#1 TGATTTCGGACGTTTGTT-----GGTTCTTGCAGGAATGTGTGTGTGTAGTAAGTTCG-T 1177 consensus_13771#2 TGATTTCGGACGTTTGTT-----GGTTCTTGCAGGAATGTGTGTGTGTAGTAAGTTCG-T 1162 consensus_13771#0 GTATTACACTGCTTCATTTCTTCAATTCCTGCGCCCATGTATGTATGCT-TAATTTGGCT 1175 *** * ** ** *** *** **** *** ** *** ** * * consensus_13771#3 CGTGAAATTAGC---ATGTGTAAAGTTTG--TGCCANTCCAACCAAAGTTTCAGGATT-A 631 consensus_13771#4 CGTGAAATTAGC---ATGTGTAAAGTTTG--TGCCACTCCAACCAAAGTTTCAGGATT-A 309 consensus_13771#1 CGTGAAATTAGC---ATGTGTAAAGTTTG--TGCCACTCCAACCAAAGTTTCAGGATT-A 1231 consensus_13771#2 CGTGAAATTAGC---ATGTGTAAAGTTTG--TGCCACTCCAACCAAAGTTTCAGGATT-A 1216 consensus_13771#0 TGTTTAATTAACTGTATGTACACATGCTGCATGCATGTTCGATTTCTATCACCCCATTCA 1235 ** ***** * **** * * ** *** * * * * * *** * consensus_13771#3 TTTATAGC--TTTGAATATATCATCAACGCTGGGGCACCAAAAAAAAAAAAAAAAAAAAA 689 consensus_13771#4 TTTATAGC--TTTGAATATATCATCAACGCTGGGGCACCATTGTTTTTGTTTCAAAAAAA 367 consensus_13771#1 TTTATAGC--TTTGAATATATCATCAACGCTGGGGCACCATTGTTTTTGTTTCCATGGAT 1289 consensus_13771#2 TTTATAGC--TTTGAATATATCATCAACGCTGGGGCCCCAAAAAAAAAAAAAAAAAAAAA 1274 consensus_13771#0 TTAATCGTGGCCGAAACAGTTCATGTCCACTAATG-ATTGCTGTATCTATCTACATATAT 1294 ** ** * ** * **** * ** * * * consensus_13771#3 AAAAA------------------------- 694 consensus_13771#4 AAA--------------------------- 370 consensus_13771#1 TTTGGGGGTAAGAAATTGACCAAAA----- 1314 consensus_13771#2 AAAAA------------------------- 1279 consensus_13771#0 CAAACCGTGAATAAAAGTTGTTATAAAAAA 1324 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||