Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13772 cluster # 13772       Sequences # 14       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13772#0 length = 784 sequences # 9  
consensus_13772#1 length = 677 sequences # 4  
consensus_13772#2 length = 330 sequences # 1  

consensusID : consensus_13772#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 784
fasta sequence
                              [ATCCCTCCCCCAAATTCCCCAACTCCGGGCCTCCGGCAAGCCAAGAAACCCCCAACCCAACTCCGGCGATGGCGTCGCAGCTGGTGGAGGAGCACCGGTCGGGCGCGGAGGTCCACACGGGGCACGAGCTCTGCGAGCGGAAGGCCCGGGAGCTGCTGGTGGAGCTCGGCCTCCCCGACGGGCTCCTCCCGCTGCCGTCCCTGGAGGAGGTCGGGTACAACCGCGCCGCCGGGTTCGTGTGGCTCCGGCAGACCCAGGCGGGCGGCGCCACCCACACGTTCGACACCATCGGGAAGCAGGTGTGGTACGCGGGCGAGGTGACGGCGTTCGTGGAGCAGGGGCGGATGCACGGCGTCGCCGGGGTGAAGAGCAAGGAGCTCCTCATCTGGGTCTCCATCTCCGAGATCGTCCTCAGCCCCTCCGGCACCAAGCTCGTCTTCCGCACCCCGGCCGGCCTCGGCCGCGCCCTCCCCGTCACCGCCTTCCAGCTCAACCCGGCGCCCCCGGAGCCGGAGAAGAAGGACGCCGCCGCCGCCGACGAGGCCGACGCCGCCGCCACCAACTGATCCAAGAAGACATGGGCGTTGCGTTTTAGCAGCGGTAAGTAAGTAGTGAGATCCGGGCCGTCGTGGTGAAAAAGATTGTAGTTGTTGTTATATGCTTGGAATTCGTGAGCCTACGAGCTCGATCTGATCTCCCATCTCTCTCCAGTCTCCAGTGTGTCTGTCCATGGATGATGCTGAAATAAATATATGTTCTTGTGGATTCCTAAAAAAAAAGCGGC]

[+] EMBL AK122046             [ATCCCTCCCCCAAATTCCCCAACTCCGGGCCTCCGGCAAGCCAAGAAACCCCCAACCCAACTCCGGCGATGGCGTCGCAGCTGGTGGAGGAGCACCGGTCGGGCGCGGAGGTCCACACGGGGCACGAGCTCTGCGAGCGGAAGGCCCGGGAGCTGCTGGTGGAGCTCGGCCTCCCCGACGGGCTCCTCCCGCTGCCGTCCCTGGAGGAGGTCGGGTACAACCGCGCCGCCGGGTTCGTGTGGCTCCGGCAGACCCAGGCGGGCGGCGCCACCCACACGTTCGACACCATCGGGAAGCAGGTGTGGTACGCGGGCGAGGTGACGGCGTTCGTGGAGCAGGGGCGGATGCACGGCGTCGCCGGGGTGAAGAGCAAGGAGCTCCTCATCTGGGTCTCCATCTCCGAGATCGTCCTCAGCCCCTCCGGCACCAAGCTCGTCTTCCGCACCCCGGCCGGCCTCGGCCGCGCCCTCCCCGTCACCGCCTTCCAGCTCAACCCGGCGCCCCCGGAGCCGGAGAAGAAGGACGCCGCCGCCGCCGACGCGGCCGACGCCGCCGCCACCAACTGATCCAAGAAGACATGGGCGTTGCGTTTTAGCAGCGGTAAGTAAGTAGTGAGATCCGGGCCGTCGTGGTGAAAAAGATTGTAGTTGTTGTTATATGCTTGGAATTCGTGAGCCTACGAGCTCGATCTGATCTCCCATCTCTCTCCAGTCTCCAGTGTGTCTGTCCATGGATGATGCTGAAATAAATATATGTTCTT                        ]
[+] EMBL AK063825             [      CCCCCAAATTCCCCAACTCCGGGCCTCCGGCAAGCCAAGAAACCCCCAACCCAACTCCGGCGATGGCGTCGCAGCTGGTGGAGGAGCACCGGTCGGGCGCGGAGGTCCACACGGGGCACGAGCTCTGCGAGCGGAAGGCCCGGGAGCTGCTGGTGGAGCTCGGCCTCCCCGACGGGCTCCTCCCGCTGCCGTCCCTGGAGGAGGTCGGGTACAACCGCGCCGCCGGGTTCGTGTGGCTCCGGCAGACCCAGGCGGGCGGCGCCACCCACACGTTCGACACCATCGGGAAGCAGGTGTGGTACGCGGGCGAGGTGACGGCGTTCGTGGAGCAGGGGCGGATGCACGGCGTCGCCGGGGTGAAGAGCAAGGAGCTCCTCATCTGGGTCTCCATCTCCGAGATCGTCCTCAGCCCCTCCGGCACCAAGCTCGTCTTCCGCACCCCGGCCGGCCTCGGCCGCGCCCTCCCCGTCACCGCCTTCCAGCTCAACCCGGCGCCCCCGGAGCCGGAGAAGAAGGACGCCGCCGCCGCCGACGAGGCCGACGCCGCCGCCACCAACTGATCCAAGAAGACATGGGCGTTGCGTTTTAGCAGCGGTAAGTAAGTAGTGAGATCCGGGCCGTCGTGGTGAAAAAGATTGTAGTTGTTGTTATATGCTTGGAATTCGTGAGCCTACGAGCTCGATCTGATCTCCCATCTCTCTCCAGTCTCCAGTGTGTCTGTCCATGGATGATGCTGAAATAAATATATGTTCTTGTGGATTCCTA             ]
[+] EMBL AU070538             [           AAATTCCCCAACTCCGGGCCTCCGGCAAGCCAAGAAACCCCCAACCCAACTCCGGCGATGGCGTCGCAGCTGGTGGAGGAGCACCGGTCGGGCGCGGAGGTCCACACGGGGCACGAGCTCTGCGAGCGGAAGGCCCGGGAGCTGCTGGTGGAGCTCGGCCTCCCCGACGGGCTCCTCCCGCTGCCGTCCCTGGAGGAGGTCGGGTACAACCGCGCCGCCGGGTTCGTGTGGCTCCGGCAGACCCAGGCGGGCGGCGCCACCCACACGTTCGACACCATCGGGAAGCAGGTGTGGTACGCGGGCGAGGTGACGGCGTTCGTGGAGCAGGGGCGGATGCACGGCGTCGCCGGGGTGAAGAGCAAGGAGCTCCTCATCTGGGTCTCCATCTCCGAGATCGTCCTCAGCCCCTCCGGCACCAAGCTCGTCTTCCGCACCCCGGCCGGCCTCGGNCGCGCCCTCCCCGTCACCG CTTTCAGCTCAA CCGGCGCCCCCGGAGCCGGAGAAGAAGGA                                                                                                                                                                                                                                                                     ]
[+] EMBL OSS3628A             [           AANTTCCCCAACTCCGGGCCTCCGGCAAGCCAAGAAACCCCCAACCCAACTCCGGCGATGGCNTCGCAGCTGGTGGAGGAGCACCGGTCGGGCGCGGAGGTCCACACGGGGCACGAGCTCTGCNAGCGGAAGGCCCGGNAGCTGCTGGTGGAGCTCGGCCTCCCCGACGGGCTCCTCCCGCTGCCGTCCCTGGAGGAGGTCGGGTACAACCGCGCCGCCGGGTTCNTTTGGCTCCGGCAGACCCAGGCGGGCGGCGCCACCCACACGTTCGACACCATCGGGAAGCAGGTTTGGTACGCGGGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AF466285             [                                                                                                                                                                                                                  TCGGGTACAACCGCGCCGCCGGGTTCGTGTGGCTCCGGCAGACCCAGGCGGGCGGCGCCACCCACACGTTCGACACCATCGGGAAGCAGGTGTGGTACGCGGGCGAGGTGACGGCGTTCGTGGAGCAGGGGCGGATGCACGGCGTCGCCGGGGTGAAGAGCAAGGAGCTCCTCATCTGGGTCTCCATCTCCGAGATCGTCCTCAGCCCCTCCGGCACCAAGCTCGTCTTCCGCACCCCGGCCGGCCTCGGCCGCGCCCTCCCCGTCACCGCCTTCCAGCTCAACCCGGCGCCCCCGGAGCCGGAGAAGAAGGACGCCGCCGCCGCCGACGAGGCCGACGCCGCCGCCACCAACTGATCCAAGAAGACATGGGCGTTGCGTTTTAGCAGCGGTAAGTAAGTAGTGAGATCCGGGCCGTCGTGGTGAAAAAGATTGTAGTTGTTGTTATATGCTTGGAATTCGTGAGCCTACGAGCTCGATCTGATCTCCCATCTCTCTCCAGTCTCCAGTGTGTCTGTCCATGGATGATGCTGAAATAAATATATGTTCTTGTGGATTCCTA             ]
[-] EMBL AU225403             [                                                                                                                                                                                                                                                                                             ccgctcGGAAGCAGGTGTGGTACGCGGGCGAGGTGACGGCGTTCGTGGAGCAGGGGCGAATGCACGGCGTCGCCGGGGTGAAGAGCAAGGAGCTCCTCATCTGGGTCTCCATCTCCGAGATCGTCCTCAGCCCCTCCGGCACCAAGCTCGTCTTCCGCACCCCGGCCGGCCTCGGCCGCGCCCTCCCCGTCACCGCCTTCCAGCTCAACCCGGCGCCCCCGGAGCCGGAGAAGAAGGACGCCGCCGCCGCCGACGAGGCCGACGCCGCCGCCACCAACTGATCCAAGAAGACATGGGCGTTGCGTTTTAGCAGCGGTAAGTAAGTAGTGAGATCCGGGCCGTCGTGGTGAAAAAGATTGTAGTTGTTGTTATATGCTTGGAATTCGTGAGCCTACGAGCTCGATCTGATCTCCCATCTCTCTCCAGTCTCCAGTGTGTCTGTCCATGGATGATGCTGAAATAAATATATGTTCTTGTGGATTCCTAAAAAAAAAGCGGC]
[+] EMBL AU174295             [                                                                                                                                                                                                                                                                                                                                                               GCGTCGCCGGGGTGAAGAGCAAGGAGCTCCTCATCTGGGTCTCCATCTCCGAGATCGTCCTCAGCCCCTCCGGCACCAAGCTNGTCTTCCGCACCCCGGCCGGCCTCGGCCGCGCCCTCCCCGTCACCGCCTTCCAGCTCAACCCGGCGCCCCCGGAGCCGGAGAANAAGGACGCCGCCGCCGCCGACGAGGCCGACGCCGCCGCCACCAACTGATCCAAGAAGACATGGGCGTTGCGTTTTAGCAGCGGTAAGTAAGTAGTGAGATCCGGGCCGTCGTGGTGAAAAAGATTGTAGTTGTTGTTATATGCTTGGAATTCGTGAGCCTACGAGCTCGATCTGATCTCCCATCTCTCTCCAGTCTCCAGTGTGTCTGTCCATGGATGATGCTGAAATAAATATATGTTCTTGTGGATTAAAAAAAAAAAAaa   ]
[-] EMBL AU225232             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCCCCCGGAGCCGGAGAAGAAGGACGCCGCCGCCGCCGACGAGGCCGACGCCGCCGCCACCAACTGATCCAAGAAGACATGGGCGTTGCGTTTTAGCAGCGGTAAGTAAGTAGTGAGATCCGGGCCGTCGTGGTGAAAAAGATTGTAGTTGTTGTTATATGCTTGGAATTCGTGAGCCTACGAGCTCGATCTGATCTCCCATCTNTNTCCAGTNTCCAGTGTGTCTGTCCATGGATGATGCTGAAATAAATATATGTTCTTGTGGATTCCTAAAAAgcggc    ]
[-] EMBL D42515               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGGCGTTGCGTTTTAGCAGCGGTAAGTAAGTAGTGAGATCCGGGCCGTCGTGGTGAAAAAGATTGTAGTTGTTGTTATATGCTTGGAATTCGTGAGCCTACGAGCTCGATCTGATCTCCCATCTCTCTCCAGTCTCCAGTGTGTCTGTCCATGGATGATGCTGAAATAAATATATGTTCTTG                       ]


>consensus_13772#0 ATCCCTCCCCCAAATTCCCCAACTCCGGGCCTCCGGCAAGCCAAGAAACCCCCAACCCAA CTCCGGCGATGGCGTCGCAGCTGGTGGAGGAGCACCGGTCGGGCGCGGAGGTCCACACGG GGCACGAGCTCTGCGAGCGGAAGGCCCGGGAGCTGCTGGTGGAGCTCGGCCTCCCCGACG GGCTCCTCCCGCTGCCGTCCCTGGAGGAGGTCGGGTACAACCGCGCCGCCGGGTTCGTGT GGCTCCGGCAGACCCAGGCGGGCGGCGCCACCCACACGTTCGACACCATCGGGAAGCAGG TGTGGTACGCGGGCGAGGTGACGGCGTTCGTGGAGCAGGGGCGGATGCACGGCGTCGCCG GGGTGAAGAGCAAGGAGCTCCTCATCTGGGTCTCCATCTCCGAGATCGTCCTCAGCCCCT CCGGCACCAAGCTCGTCTTCCGCACCCCGGCCGGCCTCGGCCGCGCCCTCCCCGTCACCG CCTTCCAGCTCAACCCGGCGCCCCCGGAGCCGGAGAAGAAGGACGCCGCCGCCGCCGACG AGGCCGACGCCGCCGCCACCAACTGATCCAAGAAGACATGGGCGTTGCGTTTTAGCAGCG GTAAGTAAGTAGTGAGATCCGGGCCGTCGTGGTGAAAAAGATTGTAGTTGTTGTTATATG CTTGGAATTCGTGAGCCTACGAGCTCGATCTGATCTCCCATCTCTCTCCAGTCTCCAGTG TGTCTGTCCATGGATGATGCTGAAATAAATATATGTTCTTGTGGATTCCTAAAAAAAAAG CGGC



consensusID : consensus_13772#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 677
fasta sequence
                              [GGGATCTCGGCCTTCCCCCGACGGTCTCCTCCCGGCTGCTACGGTCCCTGGAGGAGTTGGCCTACAACCCGCGTCCGCCGG-TTCG-TGTG--CTCCG-CAGACCCA-GC-GG-CGGCGCCACCCACACGTTCGACACCATCGGCAAGCAGGTGTGGTACGCGGGCGAGGTGACGGCGTTCGTGGAGAAGGGGCGGATGCACGGCG-TCGCCGGGGTGAAGAGCAAGGAGCTCCTCATCTGGGTCTCCATCTCCGAGATCGTCCTCAGCCCCTCCGGCACCAAGCTCGTCTTCCGCACCCCGGCCGGCCTCGGCCGCGCCCTCCCCTTCACCGCCTTCCAGCTCAACCCGGCGCCCCCGGAGCCGGAGAAGAAGGACGCCGCCGCCGACGAGGCCGACGCCGCCGCCACCAACTGATCCAAGTAAGACATGGCGTTGCAGTTTAGCAGCGGGTAAGTAAGGTCGGTTTTGGAGGTGCCAAGATCCGGGCCGTCGTGGTGAAGAAAGATTGTAGTAGTTGTATGCTTGGAATTCGTGAGCCTACGAGCTCGATCT-GATCTCCATCTCTCTCCAGTCTCCAGTGTGTCCGT-CCA-TGGATGATG-CTGAAATAAATATATGTTCTTGT-GGATTCCTAAAAACTATTGGCTCTGCCAGCTTGATCGATGGCTTGGTGATCTAAAAAAAAAA]

[+] EMBL BI804070             [GGGATCTCGGCCTTCCCCCGACGGTCTCCTCCCGGCTGCTACGGTCCCTGGAGGAGTTGGCCTACAACCCGCGTCCGCCGGTTTCG TGTGGTCTCCGCCAGACCCAGGCGGG CGGCGCCACCCACACGTTCGACACCATCGCCAACCAGGTGTGGTACGCGGGCGAGGTGACGGCGTTCGTGGAGAAGGGCCGAATGCACGGCGTTCGCCGGGGTGAAGAGCAAGGAGCTCCTCATCTGGGTCTCCATCTCCGAGATCGTCCTCAGCCCCTCCGGCACCAAGCTCGTCTTCCGCACCCCGGCCGGCCTCGGCCGCGCCCTCCCCTTCACCGCCTTCCAGCTCAACCCGGCGCCCCCGGAGCCGGAGAAGAAGGACGCCGCCGCCGACGAGGCCGACGCCGCCGCCACCAACTGATCCAAGTAAGACATGGCGTT CAGTTTAGCAGCGGGTAAGTAAGGTCGGTTTTGGAGGTGCCAAGATCCGGGCCGTCGTGGTGAAGAAAGATTGTAGTAGTTGTATGCTTGGAATTCGTGAGCCTACGAGCTCGATCT GATCTCCATCTCTCTCCAGTCTCCAGTGTGTCCGT CCA TGGATGATG CTGAAATAAATATATGTTCTTGT GGATTCCTAAAAA                                                 ]
[+] EMBL BI803959             [                                                                             CCGG TTCG TGTG  CTCCG CAGACCCA GC GG CGGCGCCACCCACACGTTCGACACCATCGGCAAGCAGGTGTGGTACGCGGGCGAGGTGACGGCGTTCGTGGAGAAGGGGCGGATGCACGGCG TCGCCGGGGTGAAGAGCAAGGAGCTCCTCATCTGGGTCTCCATCTCCGAGATCGTCCTCAGCCCCTCCGGCACCAAGCTCGTCTTCCGCACCCCGGCCGGCCTCGGCCGCGCCCTCCCCTTCACCGCCTTCCAGCTCAACCCGGCGCCCCCGGAGCCGGAGAAGAAGGACGCCGCCGCCGACGAGGCCGACGCCGCCGCCACCAACTGATCCAAGTAAGACATGGCGTTGCAGTTTAGCAGCGGGTAAGTAAGGTCGGTTTTGGAGGTGCCAAGATCCGGGCCGTCGTGGTGAAGAAAGATTGTAGTAGTTGTATGCTTGGAATTCGTGAGCCTACGAGCTCGATCT GATCTCCATCTCTCTCCAGTCTCCAGTGTGTCCGT CCA TGGATGATGCCTGAAATAAATATATGTTCTTGT GGATTCCTAAAAA                                                 ]
[+] EMBL BI803864             [                                                                                G TTCGTTGT   CTCCG CAGACCCA GC GGTCGGCGCCACCCACACGTTCGACACCATCGGCAAGCAGGTGTGGTACGCGGGCGAGGTGACGGCGTTCGTGGAGAA GGGCGGATGCACGGCG TC CC GGGTGAAGAGCAAGGAGCTCCTCATCTGGGTCTCCATCTCCGAGATCGTCCTCAGCCCCTCCGGCACCAAGCTCGTCTTCCGCACCCC GCCGGCCTCGGCCGCGCCCTCCCCTTCACCGCCTTCCAGCTCAACCCGGCGCCCCCGGAGCCGGAGAAGAAGGACGCCGCCGCCGACGAGGCCGACGCCGCCGCCACCAACTGATCCAAGTAAGACATGGCGTTGCAGTTTAGCAGCGGGTAAGTAAGGTCGGTTTTGGAGGTGCCAAGATCC GGCCGTCGTGGTGAAGAAAGATTGTAGTAGTTGTATGCTTGGAATTCGTGAGCCTACGAGCTCGATCT GATCTCCATCTCTCTCC GTCTCCAGTGTGTCCGT CCA TGGATGATG CTGAAATAAATATATGTTCTTGT GGATTCCTAAAAA                                                 ]
[+] EMBL BI800554             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TACGAGCTCGATCTGGATCTCCATCTCTCTCCCGGCTCCAGTGTGTCCGTGCCACTGGATGATG CTGAAATAAATATATGTTCTTGTGGGATTCCTAAATGCTATTGGCTCTGCCAGCTTGATCGATGGCTTGGTGATCTAAAAAAAAAA]


>consensus_13772#1 GGGATCTCGGCCTTCCCCCGACGGTCTCCTCCCGGCTGCTACGGTCCCTGGAGGAGTTGG CCTACAACCCGCGTCCGCCGGTTCGTGTGCTCCGCAGACCCAGCGGCGGCGCCACCCACA CGTTCGACACCATCGGCAAGCAGGTGTGGTACGCGGGCGAGGTGACGGCGTTCGTGGAGA AGGGGCGGATGCACGGCGTCGCCGGGGTGAAGAGCAAGGAGCTCCTCATCTGGGTCTCCA TCTCCGAGATCGTCCTCAGCCCCTCCGGCACCAAGCTCGTCTTCCGCACCCCGGCCGGCC TCGGCCGCGCCCTCCCCTTCACCGCCTTCCAGCTCAACCCGGCGCCCCCGGAGCCGGAGA AGAAGGACGCCGCCGCCGACGAGGCCGACGCCGCCGCCACCAACTGATCCAAGTAAGACA TGGCGTTGCAGTTTAGCAGCGGGTAAGTAAGGTCGGTTTTGGAGGTGCCAAGATCCGGGC CGTCGTGGTGAAGAAAGATTGTAGTAGTTGTATGCTTGGAATTCGTGAGCCTACGAGCTC GATCTGATCTCCATCTCTCTCCAGTCTCCAGTGTGTCCGTCCATGGATGATGCTGAAATA AATATATGTTCTTGTGGATTCCTAAAAACTATTGGCTCTGCCAGCTTGATCGATGGCTTG GTGATCTAAAAAAAAAA



consensusID : consensus_13772#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence
                              [CAGGATTCGCACTAGCCAACTCCGGCAAGCCAAGATCCCAACACAACCCAACTCCGGCAAGCCAAGAATCCCAACACAACCCAACTCCGGCGATGGCGTCNCANCTGGTGGAAGANCACCGGTCGGGCGCGGAAGTCCACACGGGGCACGANCTGTGCGANCGGAAGGCCCGCAANCTGCTGGTGGANCTCGGCCTCCCCGACGGGCTCCTCCCGCTGCCGTCCCTGGANGAAGTGGGCTACAACCGCGCCCCCGGGTTCGTGTGGCTCCNGCAAACCAGGCGGGCGGNGCCACCCACACTTTCAANACCATCGGCAANCAGGTTTNTGT]

[+] EMBL AA753039             [CAGGATTCGCACTAGCCAACTCCGGCAAGCCAAGATCCCAACACAACCCAACTCCGGCAAGCCAAGAATCCCAACACAACCCAACTCCGGCGATGGCGTCNCANCTGGTGGAAGANCACCGGTCGGGCGCGGAAGTCCACACGGGGCACGANCTGTGCGANCGGAAGGCCCGCAANCTGCTGGTGGANCTCGGCCTCCCCGACGGGCTCCTCCCGCTGCCGTCCCTGGANGAAGTGGGCTACAACCGCGCCCCCGGGTTCGTGTGGCTCCNGCAAACCAGGCGGGCGGNGCCACCCACACTTTCAANACCATCGGCAANCAGGTTTNTGT]


>consensus_13772#2 CAGGATTCGCACTAGCCAACTCCGGCAAGCCAAGATCCCAACACAACCCAACTCCGGCAA GCCAAGAATCCCAACACAACCCAACTCCGGCGATGGCGTCNCANCTGGTGGAAGANCACC GGTCGGGCGCGGAAGTCCACACGGGGCACGANCTGTGCGANCGGAAGGCCCGCAANCTGC TGGTGGANCTCGGCCTCCCCGACGGGCTCCTCCCGCTGCCGTCCCTGGANGAAGTGGGCT ACAACCGCGCCCCCGGGTTCGTGTGGCTCCNGCAAACCAGGCGGGCGGNGCCACCCACAC TTTCAANACCATCGGCAANCAGGTTTNTGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13772#0      ATCCCTCCCCCAAATTCCCCAACTCCGGGCCTCCGGCAAGCCAAGAAACCCCCAACCCAA 60
consensus_13772#1      ------------------------------------------------------------
consensus_13772#2      ------------------------------------------------------------
                                                                                   

consensus_13772#0      CTCCGGCGATGGCGTCGCAGCTGGTGGAGGAGCACCGGTCGGGCGCGGAGGTCCACACGG 120
consensus_13772#1      ------------------------------------------------------------
consensus_13772#2      ------------------------------------------------------------
                                                                                   

consensus_13772#0      GGCACGAGCTCTGCGAGCGGAAGGCCCGGGAGCTGCTGGTGGAGCTCGGCCT--CCCCGA 178
consensus_13772#1      ---------------------------------------GGGATCTCGGCCTTCCCCCGA 21
consensus_13772#2      ------------------------------------------------------------
                                                                                   

consensus_13772#0      CGGGCTCCTCCCG----CTGCCGTCCCTGGAGGAGGTCGGGTACAACC-GCGCCGCCGGG 233
consensus_13772#1      CGGTCTCCTCCCGGCTGCTACGGTCCCTGGAGGAGTTGGCCTACAACCCGCGTCCGCCGG 81
consensus_13772#2      -----------------------------------------CAGGATTCGCACTAGCCAA 19
                                                                 *  *   **     *   

consensus_13772#0      TTCGTGTGGCTCCGGCAGACCCAGGCGGGCGGCGCCACCCACACGTTCGACACCATCGGG 293
consensus_13772#1      TTCGTGTG-CTCCG-CAGACCCAGC--GGCGGCGCCACCCACACGTTCGACACCATCGGC 137
consensus_13772#2      CTCCGGCAAGCCAA--GATCCCAAC---ACAACCCAACTCCGGCAAGCCA-AGAATCCCA 73
                        **  *     *       ****      *  * * ** *   *   * * *  ***   

consensus_13772#0      AAGCAGGTGTGGTACGCGGGCGAGGTGACGGCGTTCGTGGAGCAGGGGCGGATGCACGGC 353
consensus_13772#1      AAGCAGGTGTGGTACGCGGGCGAGGTGACGGCGTTCGTGGAGAAGGGGCGGATGCACGGC 197
consensus_13772#2      ACACAACCCAACTCCGGCGATGGCGTCNCANC--TGGTGGAAGANCACCGGTCGGGCGCG 131
                       *  **       * **  *  *  **  *  *  * *****  *    ***  *  **  

consensus_13772#0      GTCGCCGGGGTGAAGAGCAAGGAGCTCCTCATCTGGGTCTCCATCTCCGAGATCGTCCTC 413
consensus_13772#1      GTCGCCGGGGTGAAGAGCAAGGAGCTCCTCATCTGGGTCTCCATCTCCGAGATCGTCCTC 257
consensus_13772#2      GAAGTCCACACGGGGCACGANCTGTGCGANCGGAAGGCCCGCAANCTGCTGGTGGANCTC 191
                       *  * *     *  *  * *   *  *        ** *  **       * * *  ***

consensus_13772#0      AGCCCCTCCGGCACCAAGCTCGTCTTCCGCACCCCGGCCGGCCTCGGCCGCGCCCTCCCC 473
consensus_13772#1      AGCCCCTCCGGCACCAAGCTCGTCTTCCGCACCCCGGCCGGCCTCGGCCGCGCCCTCCCC 317
consensus_13772#2      GGCCTCCCCGACGGGCTCCTCCCGCTGCCGTCCCTGGANGAAGTGGGCTACAACCGCGCC 251
                        *** * *** *      ***    * *   *** **  *   * ***  *  ** * **

consensus_13772#0      GTCACCGCCTTCCAGCTCAACCCGGCGCCCCCGGAGCCGGAGAAGAAGGACGCCGCCGCC 533
consensus_13772#1      TTCACCGCCTTCCAGCTCAACCCGGCGCCCCCGGAGCCGGAGAAGAAGGACGCCGCCGC- 376
consensus_13772#2      ----------CCCGGGTTCGTGTGGCTCCNGCAAACC------AGGCGGGCGGNGCCAC- 294
                                  ** * *      *** **  *  * *      **  ** **  *** * 

consensus_13772#0      GCCGACGAGGCCGACGCCGCCGCCACCAACTGATCCAAG-AAGACATGGGCGTTGCGTTT 592
consensus_13772#1      --CGACGAGGCCGACGCCGCCGCCACCAACTGATCCAAGTAAGACATGG-CGTTGCAGTT 433
consensus_13772#2      --CCACACTTTCAANACCATCGGCA--ANCAGGTTTNTGT-------------------- 330
                         * **     * *  **  ** **  * * * *    *                     

consensus_13772#0      TAGCAGCGG-TAAGTAAG--------------TAGTGAGATCCGGGCCGTCGTGGTGAA- 636
consensus_13772#1      TAGCAGCGGGTAAGTAAGGTCGGTTTTGGAGGTGCCAAGATCCGGGCCGTCGTGGTGAAG 493
consensus_13772#2      ------------------------------------------------------------
                                                                                   

consensus_13772#0      AAAGATTGTAGTTGTTGTTATATGCTTGGAATTCGTGAGCCTACGAGCTCGATCTGATCT 696
consensus_13772#1      AAAGATTGTAGTAGTTGT---ATGCTTGGAATTCGTGAGCCTACGAGCTCGATCTGATCT 550
consensus_13772#2      ------------------------------------------------------------
                                                                                   

consensus_13772#0      CCCATCTCTCTCCAGTCTCCAGTGTGTCTGTCCATGGATGATGCTGAAATAAATATATGT 756
consensus_13772#1      CC-ATCTCTCTCCAGTCTCCAGTGTGTCCGTCCATGGATGATGCTGAAATAAATATATGT 609
consensus_13772#2      ------------------------------------------------------------
                                                                                   

consensus_13772#0      TCTTGTGGATTCCTAAAAAAAAAGCGGC-------------------------------- 784
consensus_13772#1      TCTTGTGGATTCCTAAAAACTAT-TGGCTCTGCCAGCTTGATCGATGGCTTGGTGATCTA 668
consensus_13772#2      ------------------------------------------------------------
                                                                                   

consensus_13772#0      ---------
consensus_13772#1      AAAAAAAAA 677
consensus_13772#2      ---------
                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)