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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13773#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1919 fasta sequence
[CCGACTGCGCTGGCGGCGGCGGCGGAAACGCCGGGGTCGTCGGCCTCCCCTCATCAGGAGAGGTTCCTTCAATCCCTCTCCGCCCGCGGGTGGTGCTTCCGTGACCCCAGCATCGAGATCATCCAGGAGCTACTCCACGCCTCCCCCTCGCCGTCGCCGGAGGCCGTGGAGACCGAGCTCGTCGACGTGGACCTGAGGCTCTTCGGCGGCAAGTCGCTCCCTGACCGCGCCGCCGCCGCCGCCACGGGGAGGCGGCTTTCCTACCTCCATGGCCCCATCGTCCTGCAGATTGTGGAAGTGGCCAGAGTTTGTAGCCGAGTAGACTGACGAAAAGATGTTCTTGGCTGTTCTTGTATGGATATGTGTCAGGCCTTTGTGAAACGATGGTGTTCTTGGCTGGACATAAGGTTGAGAATTTGTGTCTGGATGCTAGGGAATGGCCTTACTTAAGATCGTTTCAATCATGTGGCTGGGGCTTGCGTTGTATCATTCTCAGTTTGTGGATGGGTCGGGTTTTGTATCCGAGCAGATGAAAAAGATGTTCTTGGCTGTTCCAGGGTGGCTATCTGAACGTCCTCTGTGGAACAATGATGTCTAGTTGTCTATCTCAATGGTGAAACATGGGCTTGTCTTTCCTGATCATGATTGAACCTACATTCATCTAGTGTTTGTGGAGCTGAACTGTTGTCCTTGTGTTTTGGATTTTTTTTTTTTTTACTGTTTGATCCCTGCTTAATGCAAACTTGTTTGCAGGTAGTATCAGTAAGAGATATATATAGAAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGTTCTGACTGATGGAATTTCTGAAGCAGTAGCGATAGAGTTTTTCCCAATCCCGTTTATCATTGAAGATATTGCTCCAGGTACTAAGATTTGTCTTGAGAACAAGATTCCAATACATAATGGCATATTGTGCTTAAGTGCGAAGAATATAAGTATCATGGGGGGAGTTGTCCAATCATTGTATGAAGAGTGGCAGATGAACCAGAAATTCTCAGGGTTATCTCGTTCATCCTTGAGGTTGTCTCAAAATGATGATGGAGTTGGACCTCCACCATTTGAGAAGTTAGATGTTGAAGCACGTCCTAGTAGGACATCCCGTTCTCAAACCTATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTCGTCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAACAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGAAGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTCCACAGCACAAAGCTACATCGACGATACCAGCCGAGACGAGGAGCTGGCAAGGCAGCTCCAGGAGCAACTAGATCTGGAAGACTCCTATGGAGTGCCAGAGAGTTCAGACGCAGATCGTTTGCGGATGAGCATGTTCAGCTTCAGCGGTCCTGAAGAAACGGGAGGGGGGAGAAGAGATTTTCGAGGGCGAGGACGGGGGAGAGGAAGGGGCCGAGGACGAGGGGGAGGCAGGGGAAGATTTTAGCCCAATCCAAACATCCAATGGCAGTGGCAATAGCAGTGGTGGTAGACCAAGTCATGTTCTTTCCTCTGGTTCCCTTCAGATGATGCTTAGCTAAAAGCTAATGTCTCAATTCAGAAACAACAGGTACTGTACAGTATCCTGGATAGATTTTTAGTTTTTGGTTGCAAAAAAAAAGG]
[+] EMBL CB623052 [CCGACTGCGCTGGCGGCGGCGGCGGAAACGCCGGGGTCGTCGGCCTCCCCTCATCAGGAGAGGTTCCTTCAATCCCTCTCCGCCCGCGGGTGGTGCTTCCGTGACCCCAGCAACGAGATCATCCAGGAGCTACTCCACGCCTCCCCCTCGCCGTCGCCGGAGGCCGTGGAGACCGAGCTCGTCGACGTGGACCTGAGGCTCTTCGGCGGCAAGTCGCTCCCTGACCGCGCCGCCGCCGCCGCCACGGGGAGGCGGCTTTCCTACCTCCATGGCCCCATCGTCCTGCAGATTGTGGAAGTGGCCAGAGTTTGTAGCCGAGTAGACTGACGAAAAGATGTTCTTGGCTGTTCTTGTATGGATATGTGTCAGGCCTTTGTGAAACGATGGTGTTCTTGGCTGGACATAAGGTTGAGAATTTGTGTCTGGATGCTAGGGAATGGCCTTACTTAAGATCGTTTCAATCATGTGGCTGGGGCTTGCGTTGTATCATTCTCAGTTTGTGGATGGGTCGGGTTTTGTATCCGAGCAGATGAAAAAGATGTTCTTGGCTGTTCCAGGGTGGCTATCTGAACGTCCTCTGTGGAACAATGATGTCTAGTTGTCTATCTCAATGGTGAAACATGGGCTTGTCTTTCCTGATCATGATTGAACCTACATTCATCTAGTGTTTGTGGAGCTGAACTGTTGTCCTTGTGTTTTGGATTTTTTTTTTTTTTACTGTTTGATCCCTGCTTAATGCAAACTTGTTTGCAGGTAGTATCAGTAAGAGATATATATAGAAGCATCATTGATGCGTCCTTTAAGAACCCACAACAACACCGCCTTCTGCGCTTTGTTCTGACTGAT ]
[+] EMBL CB620625 [ CAGCTTCGAGATCATCCAGGAGCTACTCCACGCCTCCCCCTCGCCGTCGCCGGAGGCCGTGGAGACCGAGCTCGTCGACGTGGACCTGAGGCTCTTCGGCGGCAAGTCGCTCCCTGACCGCGCCGCCGCCGCCGCCACGGGGAGGCGGCTTTCCTACCTCCATGGCCCCATCGTCCTGCAGATTGTGGAAGTGGCCAGAGTTTGTAGCCGAGTAGACTGACGAAAAGATGTTCTTGGCTGTTCTTGTATGGATATGTGTCAGGCCTTTGTGAAACGATGGTGTTCTTGGCTGGACATAAGGTTGAGAATTTGTGTCTGGATGCTAGGGAATGGCCTTACTTAAGATCGTTTCAATCATGTGGCTGGGGCTTGCGTTGTATCATTCTCAGTTTGTGGATGGGTCGGGTTTTGTATCCGAGCAGATGAAAAAGATGTTCTTGGCTGTTCCAGGGTGGCTATCTGAACGTCCTCTGTGGAACAATGATGTCTAGTTGTCTATCTCAATGGTGAAACATGGGCTTGTCTTTCCTGATCATGATTGAACCTACATTCATCTAGTGTTTGTGGAGCTGAACTGTTGTCCTTGTGTTTTGGATTTTTTTTTTTTTTACTGTTTGATCCCTGCTTAATGCAAACTTGTTTGCAGGTAGTATCAGTAAGAGATATATATAGAAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGATCTGACTGATGGAAT ]
[+] EMBL CB620623 [ CACCATCGAGATCATCCAGGAGCTACTCCACGCCTCCCCCTCGCCGTCGCCGGAGGCCGTGGAGACCGAGCTCGTCGACGTGGACCTGAGGCTCTTCGGCGGCAAGTCGCTCCCTGACCGCGCCGCCGCCGCCGCCACGGGGAGGCGGCTTTCCTACCTCCATGGCCCCATCGTCCTGCAGATTGTGGAAGTGGCCAGAGTTTGTAGCCGAGTAGACTGACGAAAAGATGTTCTTGGCTGTTCTTGTATGGATATGTGTCAGGCCTTTGTGAAACGATGGTGTTCTTGGCTGGACATAAGGTTGAGAATTTGTGTCTGGATGCTAGGGAATGGCCTTACTTAAGATCGTTTCAATCATGTGGCTGGGGCTTGCGTTGTATCATTCTCAGTTTGTGGATGGGTCGGGTTTTGTATCCGAGCAGATGAAAAAGATGTTCTTGGCTGTTCCAGGGTGGCTATCTGAACGTCCTCTGTGGAACAATGATGTCTAGTTGTCTATCTCAATGGTGAAACATGGGCTTGTCTTTCCTGATCATGATTGAACCTACATTCATCTAGTGTTTGTGGAGCTGAACTGTTGTCCTTGTGTTTTGGATTTTTTTTTTTTTTACTGTTTGATCCCTGCTTAATGCAAACTTGTTTGCAGGTAGTATCAGTAAGAGATATATATAGAAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGT ]
[+] EMBL CB664989 [ TCCCTGCTTAATGCAAACTTGTTTGCAGGTAGTATCAGTAAGAGATATATATAGAAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGTTCTGACTGATGGAATTTCTGAAGCAGTAGCGATAGAGTTTTTCCCAATCCCGTTTATCATTGAAGATATTGCTCCAGGTACTAAGATTTGTCTTGAGAACAAGATTCCAATACATAATGGCATATTGTGCTTAAGTGCGAAGAATATAAGTATCATGGGGGGAGTTGTCCAATCATTGTATGAAGAGTGGCAGATGAACCAGAAATTCTCAGGGTTATCTCGTTCATCCTTGAGGTTGTCTCAAAATGATGATGGAGTTGGACCTCCACCATTTGAGAAGTTAGATGTTGAAGCACGTCCTAGTAGGACATCCCGTTCTCAAACCTATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTCGTCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAACAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGAAGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTCCACAGCACAAAGC ]
[-] EMBL CB620624 [ TCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCGCTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCGGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGAAGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTCCACAGCACAAAGCTACATCGACGATACCAGCCGAGACGAGGAGCTGGCAAGGCAGCTCCAGGAGCAACTAGATCTGGAAGACTCCTATGGAGTGCCAGAGAGTTCAGACGCAGATCGTTTGCGGATGAGCATGTTCAGCTTCAGCGGTCCTGAAGAAACGGGAGGGGGGAGAAGAGATTTTCGAGGGCGAGGACGGGGGAGAGGAAGGGGCCGAGGACGAGGGGGAGGCAGGGGAAGATTTTAGCCCAATCCAAACATCCAATGGCAGTGGCAATAGCAGTGGTGGTAGACCAAGTCATGTTCTTTCCTCTGGTTCCCTTCAGATGATGCTTAGCTAAAAGCTAATGTCTCAATTCAGAAACAACAGGTACTGTACAGTATCCTGGATAGATTTTTAGTTTTTGGTTGCAAAAAAAAAGG]
consensusID : consensus_13773#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1649 fasta sequence
[GTATACCACAAAACCCGCCTTCACGTCTCCTACCCTAGCACTCTCCCAGACCTCGCCGGAGAACACTTCGCCCCCCGACTGCGATGGCGGCGGCGGCGGAAACGCCGGGGTCGTCGGCCTCCCCTCATCAGGAGAGGCTCCTTCAATCCCTCTCCGCCCGCGGGTGGTGCTTCCGTGACCCCAGCAACGAGATCATCCAGGAGCTACTCCACGCCTCCCCCTCGCCGTCGCCGGAGGCCGTGGAGACCGAGCTCGTCGACGTGGACCTGAGGCTCTTCGGCGGCAAGTCGCTCCCTGACCGCGCCGCCGCCGCCGCCACGGGGAGGCGGCTTTCCTACCTCCATGGCCCCATCGTCCTACAGGTAGTATCAGTAAGAGATATATATAGAAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGTTCTGACTGATGGAATTTCTGAAGCAGTAGCGATAGAGTTTTTCCCAATCCCGTTTATCATTGAAGATATTGCTCCAGGTACTAAGATTTGTCTTGAGAACAAGATTCCAATACATAATGGCATATTGTGCTTAAGTGCGAAGAATATAAGTATCATGGGGGGAGTTGTCCAATCATTGTATGAAGAGTGGCAGATGAACCAGAAATTCTCAGGGTTATCTCGTTCATCCTTGAGGTTGTCTCAAAATGATGATGGAGTTGGACCTCCACCATTTGAGAAGTTAGATGTTGAAGCACGTCCTAGTAGGACATCCCGTTCTCAAACCTATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTCGTCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAACAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGAAGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTCCACAGCACAAAGCTACATCGACGATACCAGCCGAGACGAGGAGCTGGCAAGGCAGCTCCAGGAGCAACTAGATCTTGAAGACTCCTATGGAGTGCCAGAGAGTTCAGACGCAGATCGTTTGCGGATGAGCATGTTCAGCTTCAGCGGTCCTGAAGAAACGGGAGGCGGGAGAAGAGATTTTCGAGGGCGAGGACGGGGGAGAGGAAGGGGCCGAGGACGAGGGCGAGGGCGAGGCAGGGGAAGATTTTAGCCCAATCCAAACATCCAATGGCAGTGGCAATAGCAGTTGTGGTAGACCAAGTCATGTTCTTTCCTCTGGTTCCCTTCAGATGATGCTTAGCTAAAAGCTAATGTCTCAATTCAGAAACAACATGTACTGTACACTATCCTGGATAGATTTTTAGTTTTTTGTTCACAGATGCATGGAATCAGCATATGATTAGGCCC-TTTTTTGACATAGATAGGGATTCTTTTTTTTTTTTTTTGAGCTTGGTATTCCTAACTCCACAAATTTATAGATCTAGACCTGTGATCTCGTTGA]
[+] EMBL AK122048 [GTATACCACAAAACCCGCCTTCACGTCTCCTACCCTAGCACTCTCCCAGACCTCGCCGGAGAACACTTCGCCCCCCGACTGCGATGGCGGCGGCGGCGGAAACGCCGGGGTCGTCGGCCTCCCCTCATCAGGAGAGGCTCCTTCAATCCCTCTCCGCCCGCGGGTGGTGCTTCCGTGACCCCAGCAACGAGATCATCCAGGAGCTACTCCACGCCTCCCCCTCGCCGTCGCCGGAGGCCGTGGAGACCGAGCTCGTCGACGTGGACCTGAGGCTCTTCGGCGGCAAGTCGCTCCCTGACCGCGCCGCCGCCGCCGCCACGGGGAGGCGGCTTTCCTACCTCCATGGCCCCATCGTCCTACAGGTAGTATCAGTAAGAGATATATATAGAAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGTTCTGACTGATGGAATTTCTGAAGCAGTAGCGATAGAGTTTTTCCCAATCCCGTTTATCATTGAAGATATTGCTCCAGGTACTAAGATTTGTCTTGAGAACAAGATTCCAATACATAATGGCATATTGTGCTTAAGTGCGAAGAATATAAGTATCATGGGGGGAGTTGTCCAATCATTGTATGAAGAGTGGCAGATGAACCAGAAATTCTCAGGGTTATCTCGTTCATCCTTGAGGTTGTCTCAAAATGATGATGGAGTTGGACCTCCACCATTTGAGAAGTTAGATGTTGAAGCACGTCCTAGTAGGACATCCCGTTCTCAAACCTATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTCGTCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAACAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGAAGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTCCACAGCACAAAGCTACATCGACGATACCAGCCGAGACGAGGAGCTGGCAAGGCAGCTCCAGGAGCAACTAGATCTTGAAGACTCCTATGGAGTGCCAGAGAGTTCAGACGCAGATCGTTTGCGGATGAGCATGTTCAGCTTCAGCGGTCCTGAAGAAACGGGAGGCGGGAGAAGAGATTTTCGAGGGCGAGGACGGGGGAGAGGAAGGGGCCGAGGACGAGGGCGAGGGCGAGGCAGGGGAAGATTTTGGCCCAATCCAAACATCCAATGGCAGTGGCAATAGCAGTTGTGGTAGACCAAGTCATGTTCTTTCCTCTGGTTCCCTTCAGATGATGCTTAGCTAAAAGCTAATGTCTCAATTCAGAAACAACATGTACTGTACACTATCCTGGATAGATTTTTAGTTTTTTGTTCACAGATGCATGGAATCAGCATATGATTAGGCCC TTTTTTGACATAGCTATGGATTCTTTTTTTTTTTTTTTGAGCTTGGTATTCCTAACTCCACAAATTTATAGATCTAGACCTGTGATCTCGTTGA]
[-] EMBL CB620626 [ gtgnAAGCACGTCCTAGTAGGACATCCCGTTCTCAAACCAATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTGGTCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAACAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCGCTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGAAGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTCCACAGCACAAAGCTACATCGACGATACCAGCCGAGACGAGGAGCTGGCAAGGCAGCTCCAGGAGCAACTAGATCTTGAAGACTCCTATGGAGTGCCAGAGAGTTCAGACGCAGATCGTTTGCGGATGAGCATGTTCAGCTTCAGCGGTCCTGAAGAAACGGGAGGCGGGAGAAGAGATTTTCGAGGGCGAGGACGGGGGAGAGGAAGGGGCCGAGGA CGAGGGCGAGGCAGGGGAAGATTTTAGCCCAATCCAAACATCCAATGGCAGTGGCAATAGCAGTTGTGGTAGACCAAGTCATGTTCTTTCCTCTGGTTCCCTTCAGATGATGCTTAGCTAAAAGCTAATGTCTCAATTCAGAAACAACATGTACTGTAGGCTATCCTGGATAGATTTTTAGTTTTTTGTTC ]
[-] EMBL CB664990 [ AGGAAACCGGAAGTCGGTCGTCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAACAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGAAGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTCCACAGCACAAAGCTACATCGACGATACCAGCCGAGACGAGGAGCTGGCAAGGCAGCTCCAGGAGCAACTAGATCTTGAAGACTCCTATGGAGTGCCAGAGAGTTCAGACGCAGATCGTTTGCGGATGAGCATGTTCAGCTTCAGCGGTCCTGAAGAAACGGGAGGCGGGAGAAGAGATTTTCGAGGGCGAGGACGGGGGAGAGGAAGGGGCCGAGGACGAGGGCGAGGGCGAGGCAGGGGAAGATTTTAGCCCAATCCAAACATCCAATGGCAGTGGCAATAGCAGTTGTGGTAGACCAAGTCATGTTCTTTCCTCTGGTTCCCTTCAGATGATGCTTAGCTAAAAGCTAATGTCTCAATTCAGAAACAACATGTACTGTACACTATCCTGGATAGATTTTTAGTTTTTTGTTCACAGATGCATGGAATCAGCATATGATTAGGCCCTTTTTTTGACAaaaaaaaga ]
[-] EMBL CB664937 [ AACCAGTCAATGAGAGTTCAAGTGATGAGAACAAAGAGTCTGCAGTTGAACCCAAACAATTTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGAAGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTCCACAGCACAAAGCTACATCGACGATACCAGCCGAGACGAGGAGCTGGCAAGGCAGCTCCAGGAGCAACTAGATCTTGAAGACTCCTATGGAGTGCCAGAGAGTTCAGACGCAGATCGTTTGCGGATGAGCATGTTCAGCTTCAGCGGTCCTGAAGAAACGGGAGGCGGGAGAAGAGATTTTTGAGGGCGAGGACGGGGGAGAGGAAGGGGCCGAGGACGAGGGCGAGGGCGAGGCAGGGGAAGATTTTAGCCCAATCCAAACATCCAATGGCAGTGGCAATAGCAGTTGTGGTAGACCAAGTCATGTTCTTTCCTCTGGTTCCCTTCAGATGATGCTTAGCTAAAAGCTAATGTCTCAATTCAGAAACAACATGTACTGTCCACTATCCTGGATAGATTTTTAGTTTTTTGTTCACAGATGCATGGAATCAGCATATGATTAGGCCC TTTTTTGACATAGATAGGGATTC TTTTTTTTTTTTGAGCTTGGTAaaaaaa ]
[-] EMBL CB664893 [ AGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGAAGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTCCACAGCACAAAGCTACATCGACGATACCAGCCGAGACGAGGAGCTGGCAAGGCAGCTCCAGGAGCAACTAGATCTTGAAGACTCCTATGGAGTGCCAGAGAGTTCAGACGCAGATCGTTTGCGGATGAGCATGTTCAGCTTCAGCGGTCCTGAAGAAACGGGAGGCGGGAGAAGAGATTTTCGAGGGCGAGGACGGGGGAGAGGAAGGGGCCGAGGACGAGGGCGAGGGCGAGGCAGGGGAAGATTTTAGCCCAATCCAAACATCCAATGGCAGTGGCAATAGCAGTTGTGGTAGACCAAGTCATGTTCTTTCCTCTGGTTCCCTTCAGATGATGCTTAGCTAAAAGCTAATGTCTCAATTCAGAAACAACATGTACTGTACACTATCCTGGATAGATTTTTAGTTTTTTGTTCACAGATGCATGGAATCAGCATATGATTAGGCCC TTTTTTGACATAGCTAGGGATTCTTTTTTTTTTTT ]
[-] EMBL CB664935 [ AATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGAAGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTCCACAGCACAAAGCTACATCGACGATACCAGCCGAGACGAGGAGCTGGCAAGGCAGCTCCAGGAGCAACTAGATCTTGAAGACTCCTATGGAGTGCCAGAGAGTTCAGACGCAGATCGTTTGCGGATGAGCATGTTCAGCTTCAGCGGTCCTGAAGAAACGGGAGGCGGGAGAAGAGATTTTCGAGGGCGAGGACGGGGGAGAGGAAGGGGCCGAGGACGAGGGCGAGGGCGAGGCAGGGGAAGATTTTAGCCCAATCCAAACATCCAATGGCAGTGGCAATAGCAGTTGTGGTAGACCAAGTCATGTTCTTTCCTCTGGTTCCCTTCAGATGATGCTTAGCTAAAAGCTAATGTCTCAATTCAGAAACAACATGTACTGTACACTATCCGGGATAGATTTTTAGTTTTTTGTTCACAGATGCATGGAATCAGCATATGATTAGGCCC TTTTTTGACATAGAAAGGGATTC TTTTTTTTTTTTGAGCTTGGT ]
consensusID : consensus_13773#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 810 fasta sequence
[CTGCTATG-GCGTATACCACAAAACCCGCCTTCACGTCTCCTACCCTAGCACTCTCCCAGACCTCGCCGGAGAACACTTCGCCCCCCGCCGCCACGGGGAGGCGGCTTTCCTACCTCCATGGCCCCATCGTCCTACAGGTAGTATCAGTAAGAGATATATATAGAAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGTTCTGACTGATGGAATTTCTGAAGCAGTAGCGATAGAGTTTTTCCCAATCCCGTTTATCATTGAAGATATTGCTCCAGGTACTAAGATTTGTCTTGAGAACAAGATTCCAATACATAATGGCATATTGTGCTTAAGTGCGAAGAATATAAGTATCATGGGGGGAGTTGTCCAATCATTGTATGAAGAGTGGCAGATGAACCAGAAATTCTCAGGGTTATCTCGTTCATCCTTGAGGTTGTCTCAAAATGATGATGGAGTTGGACCTCCACCATTTGAGAAGTTAGATGTTGAAGCACGTCCTAGTAGGACATCCCGTTCTCAAACCTATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTCGTCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAACAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTA]
[+] EMBL CB664934 [CTGCTATG GCGTATACCACAAAACCCGCCTTCACGTCTCCTACCCTAGCACTCTCCCAGACCTCGCCGGAGAACACTTCGCCCCCCGCCGCCACGGGGAGGCGGCTTTCCTACCTCCATGGCCCCATCGTCCTACAGGTAGTATCAGTAAGAGATATATATAGAAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGTTCTGACTGATGGAATTTCTGAAGCAGTAGCGATAGAGTTTTTCCCAATCCCGTTTATCATTGAAGATATTGCTCCAGGTACTAAGATTTGTCTTGAGAACAAGATTCCAATACATAATGGCATATTGTGCTTAAGTGCGAAGAATATAAGTATCATGGGGGGAGTTGTCCAATCATTGTATGAAGAGTGGCAGATGAACCAGAAATTCTCAGGGTTATCTCGTTCATCCTTGAGGTTGTCTCAAAATGATGATGGAGTTGGACCTCCACCATTTGAGAAGTTAGATGTTGAAGCACGTCCTAGTAGGACATCCCGTTCTCAAACCTATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTCGTCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAACAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCAGGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTA]
[+] EMBL CB664936 [CTGCTATGCGCGTATACCACAAAACCCGCCTTCACGTCTCCTACCCTAGCACTCTCCCAGACCTCGCCGGAGAACACTTCGCCCCCCGCCGCCACGGGGAGGCGGCTTTCCTACCTCCATGGCCCCATCGTCCTACAGGTAGTATCAGTAAGAGATATATATAGAAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGTTCTGACTGATGGAATTTCTGAAGCAGTAGCGATAGAGTTTTTCCCAATCCCGTTTATCATTGAAGATATTGCTCCAGGTACTAAGATTTGTCTTGAGAACAAGATTCCAATACATAATGGCATATTGTGCTTAAGTGCGAAGAATATAAGTATCATGGGGGGAGTTGTCCAATCATTGTATGAAGAGTGGCAGATGAACCAGAAATTCTCAGGGTTATCTCGTTCATCCTTGAGGTTGTCTCAAAATGATGATGGAGTTGGACCTCCACCATTTGAGAAGTTAGATGTTGAAGCACGTCCTAGTAGGACATCCCGTTCTCAAACCTATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTCGTCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAACAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAGAATGACCC ]
[+] EMBL CB664892 [CTGCTATG GCGTATACCACAAAACCCGCCTTCGCGTCTCCTACCCTAGCACTCTCCCAGACCTCGCCGGAGAACACTTCGCCCCCCGCCGCCACGGGGAGGCGGCTTTCCTACCTCCATGGCCCCATCGTCCTACAGGTAGTATCAGTAAGAGATATATATAGAAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGTTCTGACTGATGGAATTTCTGAAGCAGTAGCGATAGAGTTTTTCCCAATCCCGTTTATCATTGAAGATATTGCTCCAGGTACTAAGATTTGTCTTGAGAACAAGATTCCAATACATAATGGCATATTGTGCTTAAGTGCGAAGAATATAAGTATCATGGGGGGAGTTGTCCAATCATTGTATGAAGAGTGGCAGATGAACCAGAAATTCTCAGGGTTATCTCGTTCATCCTTGAGGTTGTCTCAAAATGATGATGGAGTTGGACCTCCACCATTTGAGAAGTTAGATGTTGAAGCACGTCCTAGTAGGACATCCCGTTCTCAAACCTATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTCGTCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCGAGTGATGAGAACAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAGTGAAGCTATTCCTGTTNCAAACCAAGCCACTGCACAGAAGCTTCTGCAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13773#1 ------------------------------------------------------------
consensus_13773#2 ------------------------------------------------------------
consensus_13773#0 CCGACTGCGCTGGCGGCGGCGGCGGAAACGCCGGGGTCGTCGGCCTCCCCTCATCAGGAG 60
consensus_13773#1 ------------------------------------------------------------
consensus_13773#2 ------------------------------------------------------------
consensus_13773#0 AGGTTCCTTCAATCCCTCTCCGCCCGCGGGTGGTGCTTCCGTGACCCCAGCATCGAGATC 120
consensus_13773#1 ------------------------------------------------------------
consensus_13773#2 ------------------------------------------------------------
consensus_13773#0 ATCCAGGAGCTACTCCACGCCTCCCCCTCGCCGTCGCCGGAGGCCGTGGAGACCGAGCTC 180
consensus_13773#1 ------------------------------------------------------------
consensus_13773#2 ------------------------------------------------------------
consensus_13773#0 GTCGACGTGGACCTGAGGCTCTTCGGCGGCAAGTCGCTCCCTGACCGCGCCGCCGCCGCC 240
consensus_13773#1 ------------------------------------------------------------
consensus_13773#2 ------------------------------------------------------------
consensus_13773#0 GCCACGGGGAGGCGGCTTTCCTACCTCCATGGCCCCATCGTCCTGCAGATTGTGGAAGTG 300
consensus_13773#1 ------------------GTATACCAC--AAAACCCGCCTTCACGTCTCCTACCCTAGCA 40
consensus_13773#2 ------------------------------------------------------------
consensus_13773#0 GCCAGAGTTTGTAGCCGAGTAGACTGACGAAAAGATGTTCTTGGCTGTTCTTGTATGGAT 360
consensus_13773#1 CTCTCCCAGACCTCGCCGGA------GAACACTTCGCCCCCC----GACTGCGA-----T 85
consensus_13773#2 ------------------------------------------------------------
consensus_13773#0 ATGTGTCAGGCCTTTGTGAAACGATGGTGTTCTTGGCTGGACATAAGGTTGAGAATTTGT 420
consensus_13773#1 GGC-GGCGGCGGCGGAAACGCCGGGGTCGTCGGCCTCCCC-TCATCAGGA-GAGGCT--C 140
consensus_13773#2 ------------------------------------------------------------
consensus_13773#0 GTCTGGATGCTAGGGAATGGCCTTACTTAAGATCGTTTCAATCATGTGGCTGGGGCTTGC 480
consensus_13773#1 CTTCAATCCCTCTCCGCCCGCGGGTGGTGC---TTCCGTGACCCCAGCA-ACGAGA---- 192
consensus_13773#2 ------------------------------------------------------------
consensus_13773#0 GTTGTATCATTCTCAGTTTGTGGATGGGTCGGGTTTTGT-ATCCGAGCAGATGAAAAAGA 539
consensus_13773#1 ----------TCATCCAGGA--GCTA-CTCCACGCCTCCC--------------CCTCGC 225
consensus_13773#2 --------------------------------------------------------CTGC 4
consensus_13773#0 TGTTCTTGGCTGTTCCAGGGTGGCTATCTGAACGTCCTCTGTGGAACAATGATGTCTAGT 599
*
consensus_13773#1 CGTCGCCGGAGGCCGTGGAGACCGAGCTCGTCGACGTGGACC-TGA--GGCTCTTCGGCG 282
consensus_13773#2 TATGGC-GTATACCACAAAACCCGCCTTCACGTCTCCTACCC-TAG--CACTCTCCCAGA 60
consensus_13773#0 TGTCTATCTCAATGGTGAAACATGGGCTTGTCTTTCCTGATCATGATTGAACCTACATTC 659
* * * * * * ** *
consensus_13773#1 GCAAGTCGCTCCCTGA-CCGCGCCGCCGCCGCCGCCACGGGGAGGCGGCTTTCCTAC-CT 340
consensus_13773#2 CC---TCGCCGGAGAA-CACTTCGCCCCCCGCCGCCACGGGGAGGCGGCTTTCCTAC-CT 115
consensus_13773#0 ATCTAGTGTTTGTGGAGCTGAACTGTTGTCCTTGTGTTTTGGATTTTTTTTTTTTTTACT 719
* * * * * * *** *** * **
consensus_13773#1 CCATGGCCCCATCGT------------CCTACAGGTAGTATCAGTAAGAGATATATATAG 388
consensus_13773#2 CCATGGCCCCATCGT------------CCTACAGGTAGTATCAGTAAGAGATATATATAG 163
consensus_13773#0 GTTTGATCCCTGCTTAATGCAAACTTGTTTGCAGGTAGTATCAGTAAGAGATATATATAG 779
** *** * * * *****************************
consensus_13773#1 AAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGTTCT 448
consensus_13773#2 AAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGTTCT 223
consensus_13773#0 AAGCATCATTGATGCGTCCTTTAAGAACCCACAGCAACACCGCCTTCTGCGCTTTGTTCT 839
************************************************************
consensus_13773#1 GACTGATGGAATTTCTGAAGCAGTAGCGATAGAGTTTTTCCCAATCCCGTTTATCATTGA 508
consensus_13773#2 GACTGATGGAATTTCTGAAGCAGTAGCGATAGAGTTTTTCCCAATCCCGTTTATCATTGA 283
consensus_13773#0 GACTGATGGAATTTCTGAAGCAGTAGCGATAGAGTTTTTCCCAATCCCGTTTATCATTGA 899
************************************************************
consensus_13773#1 AGATATTGCTCCAGGTACTAAGATTTGTCTTGAGAACAAGATTCCAATACATAATGGCAT 568
consensus_13773#2 AGATATTGCTCCAGGTACTAAGATTTGTCTTGAGAACAAGATTCCAATACATAATGGCAT 343
consensus_13773#0 AGATATTGCTCCAGGTACTAAGATTTGTCTTGAGAACAAGATTCCAATACATAATGGCAT 959
************************************************************
consensus_13773#1 ATTGTGCTTAAGTGCGAAGAATATAAGTATCATGGGGGGAGTTGTCCAATCATTGTATGA 628
consensus_13773#2 ATTGTGCTTAAGTGCGAAGAATATAAGTATCATGGGGGGAGTTGTCCAATCATTGTATGA 403
consensus_13773#0 ATTGTGCTTAAGTGCGAAGAATATAAGTATCATGGGGGGAGTTGTCCAATCATTGTATGA 1019
************************************************************
consensus_13773#1 AGAGTGGCAGATGAACCAGAAATTCTCAGGGTTATCTCGTTCATCCTTGAGGTTGTCTCA 688
consensus_13773#2 AGAGTGGCAGATGAACCAGAAATTCTCAGGGTTATCTCGTTCATCCTTGAGGTTGTCTCA 463
consensus_13773#0 AGAGTGGCAGATGAACCAGAAATTCTCAGGGTTATCTCGTTCATCCTTGAGGTTGTCTCA 1079
************************************************************
consensus_13773#1 AAATGATGATGGAGTTGGACCTCCACCATTTGAGAAGTTAGATGTTGAAGCACGTCCTAG 748
consensus_13773#2 AAATGATGATGGAGTTGGACCTCCACCATTTGAGAAGTTAGATGTTGAAGCACGTCCTAG 523
consensus_13773#0 AAATGATGATGGAGTTGGACCTCCACCATTTGAGAAGTTAGATGTTGAAGCACGTCCTAG 1139
************************************************************
consensus_13773#1 TAGGACATCCCGTTCTCAAACCTATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTCG 808
consensus_13773#2 TAGGACATCCCGTTCTCAAACCTATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTCG 583
consensus_13773#0 TAGGACATCCCGTTCTCAAACCTATTCTGATAATAAGGCTAGGAAACCGGAAGTCGGTCG 1199
************************************************************
consensus_13773#1 TCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAA 868
consensus_13773#2 TCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAA 643
consensus_13773#0 TCAGAATGTGTCAGTTAGTTCCAGTGGCAAACCAGTCAATGAGAGTTCAAGTGATGAGAA 1259
************************************************************
consensus_13773#1 CAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAG 928
consensus_13773#2 CAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAG 703
consensus_13773#0 CAAAGAGTCTGCAGTTGAACCCAAACAATCTATTTCAGATGGCAGACCAAAAGAGGTCAG 1319
************************************************************
consensus_13773#1 TGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCA 988
consensus_13773#2 TGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCA 763
consensus_13773#0 TGAAGCTATTCCTGTTCAAAACCAAGCCACTGCACAGAAGCTTCTGCAGAAAATGACCCA 1379
************************************************************
consensus_13773#1 GGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGA 1048
consensus_13773#2 GGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTA------------- 810
consensus_13773#0 GGCTGCGCCCGAAGACAGATATGGTCGGGGCCATAGATTCAAGGGTAAAGGCAGGCAAGA 1439
***********************************************
consensus_13773#1 AGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTC 1108
consensus_13773#2 ------------------------------------------------------------
consensus_13773#0 AGATACTCCAGTATTTACCCTCGATGAATGGGAGAAGCGAAAATCCGCTGGTTTGAAGTC 1499
consensus_13773#1 CACAGCACAAAGCTACATCGACGATACCAGCCGAGACGAGGAGCTGGCAAGGCAGCTCCA 1168
consensus_13773#2 ------------------------------------------------------------
consensus_13773#0 CACAGCACAAAGCTACATCGACGATACCAGCCGAGACGAGGAGCTGGCAAGGCAGCTCCA 1559
consensus_13773#1 GGAGCAACTAGATCTTGAAGACTCCTATGGAGTGCCAGAGAGTTCAGACGCAGATCGTTT 1228
consensus_13773#2 ------------------------------------------------------------
consensus_13773#0 GGAGCAACTAGATCTGGAAGACTCCTATGGAGTGCCAGAGAGTTCAGACGCAGATCGTTT 1619
consensus_13773#1 GCGGATGAGCATGTTCAGCTTCAGCGGTCCTGAAGAAACGGGAGGCGGGAGAAGAGATTT 1288
consensus_13773#2 ------------------------------------------------------------
consensus_13773#0 GCGGATGAGCATGTTCAGCTTCAGCGGTCCTGAAGAAACGGGAGGGGGGAGAAGAGATTT 1679
consensus_13773#1 TCGAGGGCGAGGACGGGGGAGAGGAAGGGGCCGAGGACGAGGGCGAGGGCGAGGCAGGGG 1348
consensus_13773#2 ------------------------------------------------------------
consensus_13773#0 TCGAGGGCGAGGACGGGGGAGAGGAAGGGGCCGAGGACGAGGGGG------AGGCAGGGG 1733
consensus_13773#1 AAGATTTTAGCCCAATCCAAACATCCAATGGCAGTGGCAATAGCAGTTGTGGTAGACCAA 1408
consensus_13773#2 ------------------------------------------------------------
consensus_13773#0 AAGATTTTAGCCCAATCCAAACATCCAATGGCAGTGGCAATAGCAGTGGTGGTAGACCAA 1793
consensus_13773#1 GTCATGTTCTTTCCTCTGGTTCCCTTCAGATGATGCTTAGCTAAAAGCTAATGTCTCAAT 1468
consensus_13773#2 ------------------------------------------------------------
consensus_13773#0 GTCATGTTCTTTCCTCTGGTTCCCTTCAGATGATGCTTAGCTAAAAGCTAATGTCTCAAT 1853
consensus_13773#1 TCAGAAACAACATGTACTGTACACTATCCTGGATAGATTTTTAGTTTTTTGTTCACAGAT 1528
consensus_13773#2 ------------------------------------------------------------
consensus_13773#0 TCAGAAACAACAGGTACTGTACAGTATCCTGGATAGATTTTTAGTTTTTGGTTGCAAAAA 1913
consensus_13773#1 GCATGGAATCAGCATATGATTAGGCCCTTTTTTGACATAGATAGGGATTCTTTTTTTTTT 1588
consensus_13773#2 ------------------------------------------------------------
consensus_13773#0 AAAAGG------------------------------------------------------ 1919
consensus_13773#1 TTTTTGAGCTTGGTATTCCTAACTCCACAAATTTATAGATCTAGACCTGTGATCTCGTTG 1648
consensus_13773#2 ------------------------------------------------------------
consensus_13773#0 ------------------------------------------------------------
consensus_13773#1 A 1649
consensus_13773#2 -
consensus_13773#0 -
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||