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Oryza sativa
cluster # 13777 cluster # 13777       Sequences # 14       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13777#0 length = 878 sequences # 9  
consensus_13777#1 length = 590 sequences # 1  
consensus_13777#2 length = 525 sequences # 1  
consensus_13777#3 length = 496 sequences # 1  
consensus_13777#4 length = 362 sequences # 1  
consensus_13777#5 length = 315 sequences # 1  

consensusID : consensus_13777#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 878
fasta sequence
                              [GGTAACCCCTGCAGGTTACCCGGTTCCGGAAATTCCCCGGGTTCGACCCACGCGTTCCGGATATGATAGACCCAAACGCAA-GAATGGCA-TCCAGCTGTTCCAACCGTGGTCTCCTCCTCCTCCTCGCTTCCGCCGTCCTCCTCT-CCGGCCTCGCCGCCGGCCGCCG-CTGGGAGTGGGAGAGTCAGTGCCAGCCGTGGGAGGCCTTCCCGCACAACCCGCTCTCCGGCT-GCCGCGGCTAC-GTGATCAGCCGC-GCCTGCCCGGGCCAC--GGCCGCGCCGCCCGGAGATGGCCAAGGCGCGGTG-CTG-CCGCGAGCTCGCCGCCGTCCAGCCGCG-CTGC-CGGTGCGAGGCGCTG-CGGCTGTTCATGGACGGC-GTGGGCGAGCTGCGCGGGTGCCCGAGGGAGGCGCAGAGGGCCGCC-GCCGCCGCGC-TCATGGCGGCGGGGGAGTGC-GA-CCTGCGGGGTGGCTCCGGCGAGACGGAGCGGTGCTA-CTGGCCA-TGGCTCGTCGGCGACGGCGATGTG-CCAGTGTACTGAGAAGAAGTGAAGCTTGTGATATTATATTATTTT-CAAAAAAAAAATGTGGAGATTGTGATATGTAAGTTTTCGAATAAAGTGTTGCA-TCGGTGGATTGATCTGATATATTCAGATCGTCTCATTCAAATG--CTTGCGAACTGAATTAATA-TTAA-ACGAATAATTGAATTAATATTAAA--AAAAAAAAAAGCGGCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGTAACTTGTAAAAGATTAGGAGTATCAAAAAGGCAGGCACGCATCATGCAAGATTCTGAGCCATCATACGATGGAGAAAAGTACAGCAGCTCACTCAGTCGCCAAAAAAAA]

[+] EMBL BI796349             [GGTAACCCCTGCAGGTTACCCGGTTCCGGAAATTCCCCGGGTTCGACCCACGCGTTCCGGATATGATAGACCCAAACGCAAGGAATGGCATTCCAGCTGTTCCAACCGTGGTCTCCTCCTCCTCCTCGCTTCC CCGTCCTCCTCTCCCGGCCTCGCCGCC GCCGCCG CTGGGAGTGGGAGAGTCAGTGCCAGCCGTGGGAGGCCTTCCCGCACAACCCGCTCTCCGGCT GCCGCGGCTAC GTGATCAGCCGC GCCTGCCCGGGCCAC  GGCCGC CCGCCCGGAGATGGCCAAGGCGCGGTG CTG CCGCGAGCTCGCCGCCGTCCAGCCGCG CTGC CGGTGCGAGGCGCTG CGGCTGTTCATGGACGGC GTGGGCGAGCTGCGCGGGTGCCCGAGGGAGGCGCAGAGGGCCGCC GCCGCCGCGC TCATGGCGGCGGGGGAGTGC GA CCTGCGGGGTGGCTCCGGCGAGACGGAGCGGTGCTA CTGGCCA TGGCTCGTCGGCGACGGCGAGGTG CCAGTGTACTGAGAAGAAGTGAAGCTTGTGATATTATATTATTTT CAAAAA                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BI799438             [                                                                       gacAACGCAA GAATGGCA TCCAGCTGTTCCAACCGTGGTCTCCTCCTCCTCCTCGCTTCC CCGTCCTCCTCT CCGGCCTCGCCGCCGGCCGCCG CTGGGAGTGGGAGAGTCAGTGCCAGCCGTGGGAGGCCTTCCCGCACAACCCGCTCTCCGGCT GCCGCGGCTAC GTGATCAGCCGC GCCTGCCCGGGCCACG GGCCGCGCCGCCCGGAGATGGCCAAGGCGCGGTG CTG CCGCGAGCTCGCCGCCGTCCAGCCGCG CTGC CGGTGCGAGGCGCTG CGGCTGTTCATGGACGGC GTGGGCGAGCTGCGCGGGTGCCCGAGGGAGGCGCAGAGGGCCGCC GCCGCCGCGC TCATGGCGGCGGGGGAGTGC GA CCTGCGGGGTGGCTCCGGCGAGACGGAGCGGTGCTA CTGGCCA TGGCTCGTCGGCGACGGCGATGTG CCAGTGTACTGAGAAGAAGTGAAGCTTGTGATATTATATTATTTT CAAAAA                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BI797635             [                                                                                A GAATGGCA TCCAGCTGTTCCAACCGTGGTCTCCTCCTCCTCCTCGCTTCCGCCGTCCTCCTCT CCGGCCTCGCCGCCGGCCGCCG CTGGGAGTGGGAGAGTCAGTGCCAGCCGTGGGAGGCCTTCCCGCACAACCCGCTCTCCGGCT GCCGCGGCTAC GTGATCAGCCGC GCCTGCCCGGGCCACG GGCCGCGCCGCCCGGAGATGGCCAAGGCGCGGTG CTG CCGCGAGCTCGCCGCCGTCCAGCCGCG CTGC CGGTGCGAGGCGCTG CGGCTGTTCATGGACGGC GTGGGCGAGCTGCGCGGGTGCCCGAGGGAGGCGCAGAGGGCCGCC GCCGCCGCGC TCATGGCGGCGGGGGAGTGC GA CCTGCGGGGTGGCTCCGGCGAGACGGAGCGGTGCTA CTGGCCA TGGCTCGTCGGCGACGGCGATGTG CCAGTGTACTGAGAAGAAGTGAAGCTTGTGATATTATATTATTTT CAAAAAAAAAATGTGGAGATTGTGATAaaaaaaaaa                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BI800023             [                                                                                     atGCA TCCAGCTGTTCCAACCGTGGTCTCCTCCTCCTCCTCGCTTCCGCCGTCCTCCTCT CCGGCCTCGCCGCCGGCCGCCG CTGGGAGTGGGAGAGTCAGTGCCAGCCGTGGGAGGCCTTCCCGCACAACCCGCTCTCCGGCT GCCGCGGCTAC GTGATCAGCCGC GCCTGCCCGGGCCACG GGCCGCGCCGCCCGGAGATGGCCAAGGCGCGGTG CTG CCGCGAGCTCGCCGCCGTCCAGCCGCG CTGC CGGTGCGAGGCGCTG CGGCTGTTCATGGACGGC GTGGGCGAGCTGCGCGGGTGCCCGAGGGAGGCGCAGAGGGCCGCC GCCGCCGCGC TCATGGCGGCGGGGGAGTGC GA CCTGCGGGGTGGCTCCGGCGAGACGGAGCGGTGCTATCTGGCCA TGGCTCGTCGGCGACGGCGATGTG CCAGTGTACTGAGAAGAAGTGAAGCTTGTGATATTATATTATTTT CAAAAAAAAAATGTGGAGATTGTGATATGTAAGTTTTCGAATAAAGTGTTGCA TCGGTGGATTGATCTGATAaaaaaa                                                                                                                                                                                                                                                          ]
[+] EMBL BI796170             [                                                                                       GCA TCCA CTGTTCCAACCGTGGTCTCCTCCTCCTCCTCGCTTCC CCGTCCTCCTCT CCGGCCTCGCCGCCGGCC CCG CTGGGAGTGGGAGAGTCAGTGCCAGCCGTGGGAGGCCTTCCCGCACAACCCGCTCTCCGGCTGGCCGCGGCTAC GTGATCAGCCGC GCCTGCCCGGGCCAC  GGCCGCGCCGCCCGGAGATGGCCAAGGCGCGGTG CTGTCCGCGAGCTCGCCGCCGTCCAGCCGCGTCTGC CGGTGCGAGGCGCTGTCGGCTGTTCATGGACGGC GTGGGCGAGCTGCGCGGGTGCCCGAGGGAGGCGCAGAGGGCCGCC GCCGCCGCGC TCATGGCGGCGGGGGAGTGC GA CCTGCGGGGTGGCTCCGGCGAGACGGAGCGGTGCTA CTGGCCA TGGCTCGTCGGCGACGGCGATGTG CCAGTGTACTGAGAAGAAGTGAAGCTTGTGATATTATATTATTTT CAAAAA                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BI796780             [                                                                                    tccGCA TCCA CTGTTCCAACCGTGGTCTCCTCCTCCTCCTCGCTTCCGCCGTCCTCCTCT CCGGCCTCGCCGCC GCCGCCG CTGGGAGTGGGAGAGTCAGTGCCA CC TGGGA GCCTTCCCGCACAACCCGCTCTCCGGCT GCCGCGGCTAC GTGATCAGCCGC GCCTGCCCGGGCCAC  GGCCGCGCCGCCCGGAGATGGCCAAGGC CGGTGTCT  CCGCGAGCTCTCC CCGTCCA CCGCGTCTGC CGGTGCGAGGCGCTG CGGCTGTTCATGGACGGC GTGGGCGAGCTGCGCGGGTGCCCGAGGGAGGCGCAGAGGGCCGCC GCCGCCGCGC TCATGGCGGCGGGGGAGTGC GA CCTGCGGGGTGGCTCCGGCGAGACGGA CGGTGCTA CTGGCCA TGGCTCGTCGGCGACGGCGATGTG CCAGTGTACTGAGAAGAAGTGAAGCTTGTGATATTATATTATTTT CAAAAA                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BI799951             [                                                                                                               TCTCCTCCTCCTCCTCGCTTCCGCCGTCCTCCTCT CC GCCTCGCCGCC GCCGCCGTCTGGGAGTGGGAGAGTCAGTCCCACCCGTGGGAGCCCTTCCCGCACAACCCGCTCTCCGGCT  CCGCGGCTAC GTGATCAGCCGC GCCTGCCCGGGCCACCGGGCCGC CCGCCCGGAGATGGCCAAGGCGCGGTG CTC CCGCGAGCTCGCCGCCGTCCAGCCGCG CTGC CGGTGCGAGGCGCTG CGGCTGTTCATGGACGGC GTGGGCGAGCTGCGCGGGTGCCCGAGGGAGGCGCAGAGGGCCGCC GCCGCCGCGC TCATGGCGGCGGGGGAGTGC GACCCTGCGGGGTGGCTCCGGCGAGACGGAGCGGTGCTA CTGGCCACTGGCTCGTCGGCGACGGCGATGTG CCAGTGTACTGAGAAGAAGTGAAGCTTGTGATATTATATTATTTT CAAAAAAAAAATGTGGAGATTGTGATATGTAAGTTTTCGAATAAAGTGTTGCA TCGGTGGATTGATCTGATATATTCAGATCGTCTCATTCAAATG  CTTGCGAACTGAATTAATA TTAA ACGAATAATTGAATTAATATTAAACGAAAAAAAAAA                                                                                                                                                                         ]
[+] EMBL BI794980             [                                                                                                                                                                                                       GGGAGGCCTTCCCGCACAACCCGCTCTCCGGCT  CCGCGGCTACTGTGATCA CCGCGGCCTGCCCGGGCCAC  GGCCGCGCCGCCCGGAGATGGCCAAGGCGCGGTG CT  CCGCGAGCTCTCC CCGTCCATCCGCGTCTGCGCGGTGCGAGGCGCTG CGGCTGTTCATGGACGGC GTGGGCGA CTGCGC GGTGCCCGAGGGAGGC CAGA GGCC CC  CC CCGCGC TCAT GC GCGGGGGAGTGCAGA CCTGCGGGGTGGCTCCGGCGAGACGGA CGGTGCTA CT GCCA TGGCTCGTCGGCGACGGCGATGTG CCAGTGTACTGAGAAGAAGTGAAGCTTGTGATATTATATTATTTT CAAAAAAAAAATGTGGAGATTGTGATATGTAAGTTTTCGAATAAAGTGTTGCA TCGGTGGATTGATCTGATATATTCAGATCGTCTCATTC AAT   CTTGCGAACTGAATTAATA TTAA ACGAATAATTGAATTAATATTAAA  AAAAAA                                                                                                                                                                             ]
[+] EMBL BI798623             [                                                                                                                                                                                                                                                                                                                                                                   GGC CTC CGCCTGTTCAT GACGGCTGT GGCGA CTGCCCGGGTGCCCGAGGGAGGCCCAGAGGGCCCCCTGCCGCCGCGCTTCATGGCGCCGGGGGAGTGC GA CCTGCGGGGTGGCTCCGGCGAGACGGAGCGGTGCTA CTGGCCC TGGCTCGTCGGCGACGGCGATGTGCCCAGTGTACTGAGAAGAAGTGAAGCTTGTGATATTATATTATTTTCCAAAAAAAAAATGTGGAGATTGTGATATGTAAGTTTTCGAATAAAGTGTTGCACTCGGTGGATTGATCTGATATATTCAGATCGTCTCATTCAAATGCCCTTGCGAACTGAATTAATATTTAACACGAATAATTGAATTAAAA  AAA  AAAAAAAAGGGCGGCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGTAACTTGTAAAAGATTAGGAGTATCAAAAAGGCAGGCACGCATCATGCAAGATTCTGAGCCATCATACGATGGAGAAAAGTACAGCAGCTCACTCAGTCGCCAAAAAAAA]


>consensus_13777#0 GGTAACCCCTGCAGGTTACCCGGTTCCGGAAATTCCCCGGGTTCGACCCACGCGTTCCGG ATATGATAGACCCAAACGCAAGAATGGCATCCAGCTGTTCCAACCGTGGTCTCCTCCTCC TCCTCGCTTCCGCCGTCCTCCTCTCCGGCCTCGCCGCCGGCCGCCGCTGGGAGTGGGAGA GTCAGTGCCAGCCGTGGGAGGCCTTCCCGCACAACCCGCTCTCCGGCTGCCGCGGCTACG TGATCAGCCGCGCCTGCCCGGGCCACGGCCGCGCCGCCCGGAGATGGCCAAGGCGCGGTG CTGCCGCGAGCTCGCCGCCGTCCAGCCGCGCTGCCGGTGCGAGGCGCTGCGGCTGTTCAT GGACGGCGTGGGCGAGCTGCGCGGGTGCCCGAGGGAGGCGCAGAGGGCCGCCGCCGCCGC GCTCATGGCGGCGGGGGAGTGCGACCTGCGGGGTGGCTCCGGCGAGACGGAGCGGTGCTA CTGGCCATGGCTCGTCGGCGACGGCGATGTGCCAGTGTACTGAGAAGAAGTGAAGCTTGT GATATTATATTATTTTCAAAAAAAAAATGTGGAGATTGTGATATGTAAGTTTTCGAATAA AGTGTTGCATCGGTGGATTGATCTGATATATTCAGATCGTCTCATTCAAATGCTTGCGAA CTGAATTAATATTAAACGAATAATTGAATTAATATTAAAAAAAAAAAAAGCGGCCCCCCC TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGTAACTTGTAAAA GATTAGGAGTATCAAAAAGGCAGGCACGCATCATGCAAGATTCTGAGCCATCATACGATG GAGAAAAGTACAGCAGCTCACTCAGTCGCCAAAAAAAA



consensusID : consensus_13777#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 590
fasta sequence
                              [CGTCCTCCTCTCCAGGCCTTCAGCCAGCCGGCACGCCGCTGGGAGTGGGAGAGTCAGTGCCAGCCGTGGGAGCCTTTCTCCAGCACAACCCAGCTTCATCCAGGCATGCCAGCAGGCATACAGTGATCAAGCCAGCAGCACATGCACCAGGGCACACAGGGCCAGCAGCACAGCACACAGGAGATGGCACAAGGCAGCGGTGCATGCCAGCAGAGCATCAGCACAGCACAGTCCAAGCCAGCAGCATGCACAGGTGCGAGGCAGCATGCAGGCATGTTCAATGGACAGGCGTGGGCGAAGCATGCAGCAGGGTGCCACAGAGGGAGGCAGCAGAGGGCACAGCACAGCACAGCACAGCAGCTCATGGCAGGCGGGGGAGTGCAGACCATGCCGGGGTGGCATCACAGGCGAGACAGGAGCAGGTGCTACATGGCCATTGGCATCGTCAGGCGACAGGCAGATGTGCCAAGTGTACTGAGAAGAAGTGAAGCTTGTGATATTATATTATTTTCAAAAAAAAAATGTGGAGATTGTGATATGTAAGTTTTCGAATAAAGTGTTGCATCGGTGGATTGATCTGATAAAAAAAA]

[+] EMBL BI797759             [CGTCCTCCTCTCCAGGCCTTCAGCCAGCCGGCACGCCGCTGGGAGTGGGAGAGTCAGTGCCAGCCGTGGGAGCCTTTCTCCAGCACAACCCAGCTTCATCCAGGCATGCCAGCAGGCATACAGTGATCAAGCCAGCAGCACATGCACCAGGGCACACAGGGCCAGCAGCACAGCACACAGGAGATGGCACAAGGCAGCGGTGCATGCCAGCAGAGCATCAGCACAGCACAGTCCAAGCCAGCAGCATGCACAGGTGCGAGGCAGCATGCAGGCATGTTCAATGGACAGGCGTGGGCGAAGCATGCAGCAGGGTGCCACAGAGGGAGGCAGCAGAGGGCACAGCACAGCACAGCACAGCAGCTCATGGCAGGCGGGGGAGTGCAGACCATGCCGGGGTGGCATCACAGGCGAGACAGGAGCAGGTGCTACATGGCCATTGGCATCGTCAGGCGACAGGCAGATGTGCCAAGTGTACTGAGAAGAAGTGAAGCTTGTGATATTATATTATTTTCAAAAAAAAAATGTGGAGATTGTGATATGTAAGTTTTCGAATAAAGTGTTGCATCGGTGGATTGATCTGATAAAAAAAA]


>consensus_13777#1 CGTCCTCCTCTCCAGGCCTTCAGCCAGCCGGCACGCCGCTGGGAGTGGGAGAGTCAGTGC CAGCCGTGGGAGCCTTTCTCCAGCACAACCCAGCTTCATCCAGGCATGCCAGCAGGCATA CAGTGATCAAGCCAGCAGCACATGCACCAGGGCACACAGGGCCAGCAGCACAGCACACAG GAGATGGCACAAGGCAGCGGTGCATGCCAGCAGAGCATCAGCACAGCACAGTCCAAGCCA GCAGCATGCACAGGTGCGAGGCAGCATGCAGGCATGTTCAATGGACAGGCGTGGGCGAAG CATGCAGCAGGGTGCCACAGAGGGAGGCAGCAGAGGGCACAGCACAGCACAGCACAGCAG CTCATGGCAGGCGGGGGAGTGCAGACCATGCCGGGGTGGCATCACAGGCGAGACAGGAGC AGGTGCTACATGGCCATTGGCATCGTCAGGCGACAGGCAGATGTGCCAAGTGTACTGAGA AGAAGTGAAGCTTGTGATATTATATTATTTTCAAAAAAAAAATGTGGAGATTGTGATATG TAAGTTTTCGAATAAAGTGTTGCATCGGTGGATTGATCTGATAAAAAAAA



consensusID : consensus_13777#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 525
fasta sequence
                              [CCAGCGCAAGAATGGCATCCAGCTGTTCCAACCGTGTCTCCTCCTCCATCCTCGCTTCCGCCGTCCTCCTCTCCGCCTCCCACCAGCCACCGCTGGGAGTGGGAGAGTCAGTGCCAGCCGTGGGAGGCCTTCCCGCACAACCCGCTCTCCAGGCTGCACGCGGCTACGTGATCAGCCAGCAGCCTGCCCAGGGCCACAGGCCAGCACCGCCCAGGAGATGGCACAAGGCGCAGGTGCATGCCAGCAGAGCTCGCCAGCCAGTCCAGCCAGCGCTGCCAGGTGCGAGGCAGCATGCAGGCATGTTCATGGACAGGCAGTGGGCAGAGCATGCAGCGGGTGCCACGAGGGAGGCAGCAGAGGGCACAGCACAGCACAGCCAGCAGCTCATGGCAGGCGGGGGAGTGCGACCTGCGGGGTGGCTCCGGCGAGACGGAGCGGTGCTACTGGCCATGGCTCGTCGGCGACGGCGATGTGCCAGTGTACTGAGAAGAAGTGAAGCTTGTGATATTATATTATTTTCAAAAA]

[+] EMBL BI795680             [CCAGCGCAAGAATGGCATCCAGCTGTTCCAACCGTGTCTCCTCCTCCATCCTCGCTTCCGCCGTCCTCCTCTCCGCCTCCCACCAGCCACCGCTGGGAGTGGGAGAGTCAGTGCCAGCCGTGGGAGGCCTTCCCGCACAACCCGCTCTCCAGGCTGCACGCGGCTACGTGATCAGCCAGCAGCCTGCCCAGGGCCACAGGCCAGCACCGCCCAGGAGATGGCACAAGGCGCAGGTGCATGCCAGCAGAGCTCGCCAGCCAGTCCAGCCAGCGCTGCCAGGTGCGAGGCAGCATGCAGGCATGTTCATGGACAGGCAGTGGGCAGAGCATGCAGCGGGTGCCACGAGGGAGGCAGCAGAGGGCACAGCACAGCACAGCCAGCAGCTCATGGCAGGCGGGGGAGTGCGACCTGCGGGGTGGCTCCGGCGAGACGGAGCGGTGCTACTGGCCATGGCTCGTCGGCGACGGCGATGTGCCAGTGTACTGAGAAGAAGTGAAGCTTGTGATATTATATTATTTTCAAAAA]


>consensus_13777#2 CCAGCGCAAGAATGGCATCCAGCTGTTCCAACCGTGTCTCCTCCTCCATCCTCGCTTCCG CCGTCCTCCTCTCCGCCTCCCACCAGCCACCGCTGGGAGTGGGAGAGTCAGTGCCAGCCG TGGGAGGCCTTCCCGCACAACCCGCTCTCCAGGCTGCACGCGGCTACGTGATCAGCCAGC AGCCTGCCCAGGGCCACAGGCCAGCACCGCCCAGGAGATGGCACAAGGCGCAGGTGCATG CCAGCAGAGCTCGCCAGCCAGTCCAGCCAGCGCTGCCAGGTGCGAGGCAGCATGCAGGCA TGTTCATGGACAGGCAGTGGGCAGAGCATGCAGCGGGTGCCACGAGGGAGGCAGCAGAGG GCACAGCACAGCACAGCCAGCAGCTCATGGCAGGCGGGGGAGTGCGACCTGCGGGGTGGC TCCGGCGAGACGGAGCGGTGCTACTGGCCATGGCTCGTCGGCGACGGCGATGTGCCAGTG TACTGAGAAGAAGTGAAGCTTGTGATATTATATTATTTTCAAAAA



consensusID : consensus_13777#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 496
fasta sequence
                              [GGCTCCCTGCAGGCTTAACGTGGATCTACCGCGCCCTTGCACCAGGGCCACAGGGCCCGCGCCGCCCCGGTAGATTGGCCACATAGGCACGGTTGCTTCCGCCGATGCTTTTCCTCCATGTCCAGGCCAGCTGCTGCCACGGTGCGAGGCAGCTTCAGGCATGTTCATGGACAGGCAGTGGGCAGAGCTGCACGCAGGGTGCCACAGAGGGAGGCCGCAAGAGGGCCACGCACATGCACACGCCAGCAGCTTCATGGCGGGCAGGGGGAGTGCAGACCTTGCAGGGGTGGCTCCGGCGAGACGGACAGGTGCTACTGGCCACTGGCTCGTCGGCAGACAGGCGATGTGCCAGTGTACTGAGAAGAAGTGAAGCATTGTGATATTATATTATTTTCAAAAAAAAAAATGTGGAGATTGTGATATGTAAGTTTTCAGAATAAATTTGCATCGGTGGATTGATCTGATATATTCAGATCGTCTCATTCCAAAAAAAAAA]

[+] EMBL BI795039             [GGCTCCCTGCAGGCTTAACGTGGATCTACCGCGCCCTTGCACCAGGGCCACAGGGCCCGCGCCGCCCCGGTAGATTGGCCACATAGGCACGGTTGCTTCCGCCGATGCTTTTCCTCCATGTCCAGGCCAGCTGCTGCCACGGTGCGAGGCAGCTTCAGGCATGTTCATGGACAGGCAGTGGGCAGAGCTGCACGCAGGGTGCCACAGAGGGAGGCCGCAAGAGGGCCACGCACATGCACACGCCAGCAGCTTCATGGCGGGCAGGGGGAGTGCAGACCTTGCAGGGGTGGCTCCGGCGAGACGGACAGGTGCTACTGGCCACTGGCTCGTCGGCAGACAGGCGATGTGCCAGTGTACTGAGAAGAAGTGAAGCATTGTGATATTATATTATTTTCAAAAAAAAAAATGTGGAGATTGTGATATGTAAGTTTTCAGAATAAATTTGCATCGGTGGATTGATCTGATATATTCAGATCGTCTCATTCCAAAAAAAAAA]


>consensus_13777#3 GGCTCCCTGCAGGCTTAACGTGGATCTACCGCGCCCTTGCACCAGGGCCACAGGGCCCGC GCCGCCCCGGTAGATTGGCCACATAGGCACGGTTGCTTCCGCCGATGCTTTTCCTCCATG TCCAGGCCAGCTGCTGCCACGGTGCGAGGCAGCTTCAGGCATGTTCATGGACAGGCAGTG GGCAGAGCTGCACGCAGGGTGCCACAGAGGGAGGCCGCAAGAGGGCCACGCACATGCACA CGCCAGCAGCTTCATGGCGGGCAGGGGGAGTGCAGACCTTGCAGGGGTGGCTCCGGCGAG ACGGACAGGTGCTACTGGCCACTGGCTCGTCGGCAGACAGGCGATGTGCCAGTGTACTGA GAAGAAGTGAAGCATTGTGATATTATATTATTTTCAAAAAAAAAAATGTGGAGATTGTGA TATGTAAGTTTTCAGAATAAATTTGCATCGGTGGATTGATCTGATATATTCAGATCGTCT CATTCCAAAAAAAAAA



consensusID : consensus_13777#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence
                              [CTACGTGATCAGCCTGCAGCCTGCCCAGGGCACACGGTCCAGCATCACAGCCACGGAGATGGCCAAGGCAGCGGTGCTGCCGCGAGCTCGCCAGCCAGTCCAGCCAGCAGCTGCCAGAGTGCAGAGGCAGCTGCGGCATGTTCATGGACAGGCGTGGGCAGAGCATGCGCAGGGTGCCACAGAGGGAGGCGCAGAGGGCCAGCCAGCCAGCACAGCGCTCATGGCGGCAGGGGGAGTGCGACCTGTCGGGGTGGCTCCGACGAGACGGAGCGGGTGCTACTGGCCATGGCTCGTCGGCGACGGCGATGTGCCAGTGTACTGAGAAGAAGTGAAGCTTGTGATATTATATTATTTTCAAAAAA]

[+] EMBL BI797040             [CTACGTGATCAGCCTGCAGCCTGCCCAGGGCACACGGTCCAGCATCACAGCCACGGAGATGGCCAAGGCAGCGGTGCTGCCGCGAGCTCGCCAGCCAGTCCAGCCAGCAGCTGCCAGAGTGCAGAGGCAGCTGCGGCATGTTCATGGACAGGCGTGGGCAGAGCATGCGCAGGGTGCCACAGAGGGAGGCGCAGAGGGCCAGCCAGCCAGCACAGCGCTCATGGCGGCAGGGGGAGTGCGACCTGTCGGGGTGGCTCCGACGAGACGGAGCGGGTGCTACTGGCCATGGCTCGTCGGCGACGGCGATGTGCCAGTGTACTGAGAAGAAGTGAAGCTTGTGATATTATATTATTTTCAAAAAA]


>consensus_13777#4 CTACGTGATCAGCCTGCAGCCTGCCCAGGGCACACGGTCCAGCATCACAGCCACGGAGAT GGCCAAGGCAGCGGTGCTGCCGCGAGCTCGCCAGCCAGTCCAGCCAGCAGCTGCCAGAGT GCAGAGGCAGCTGCGGCATGTTCATGGACAGGCGTGGGCAGAGCATGCGCAGGGTGCCAC AGAGGGAGGCGCAGAGGGCCAGCCAGCCAGCACAGCGCTCATGGCGGCAGGGGGAGTGCG ACCTGTCGGGGTGGCTCCGACGAGACGGAGCGGGTGCTACTGGCCATGGCTCGTCGGCGA CGGCGATGTGCCAGTGTACTGAGAAGAAGTGAAGCTTGTGATATTATATTATTTTCAAAA AA



consensusID : consensus_13777#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 315
fasta sequence
                              [TCCCCCCCGTCCACCCGCGCCCGGTGCGAGGCGCTGCGCCTGTTCATGGACGGCGTGGGCGAGCTGCGCGGGTGCCCGAGGGAGGCCCAGAGGCCCCCCCCGCGCTCATGCGCGGGGGAGTGCGACCCTGCCGGGGTGGCTCCGGCGAGACGGAGCGGTGCTACTGCCATGCTCGTCGGCGACGGCGATGTCCAGTGTACTGAGAAGAAGTGAAGCTTGTGATATTATATTATTTAAAAAAAAATGTGGAGATTGTGATATGTAAGTTTTCGAATAAGTGTGCATCGTGATGATCTGATATATTCAGATCTTCTC]

[+] EMBL BI797515             [TCCCCCCCGTCCACCCGCGCCCGGTGCGAGGCGCTGCGCCTGTTCATGGACGGCGTGGGCGAGCTGCGCGGGTGCCCGAGGGAGGCCCAGAGGCCCCCCCCGCGCTCATGCGCGGGGGAGTGCGACCCTGCCGGGGTGGCTCCGGCGAGACGGAGCGGTGCTACTGCCATGCTCGTCGGCGACGGCGATGTCCAGTGTACTGAGAAGAAGTGAAGCTTGTGATATTATATTATTTAAAAAAAAATGTGGAGATTGTGATATGTAAGTTTTCGAATAAGTGTGCATCGTGATGATCTGATATATTCAGATCTTCTC]


>consensus_13777#5 TCCCCCCCGTCCACCCGCGCCCGGTGCGAGGCGCTGCGCCTGTTCATGGACGGCGTGGGC GAGCTGCGCGGGTGCCCGAGGGAGGCCCAGAGGCCCCCCCCGCGCTCATGCGCGGGGGAG TGCGACCCTGCCGGGGTGGCTCCGGCGAGACGGAGCGGTGCTACTGCCATGCTCGTCGGC GACGGCGATGTCCAGTGTACTGAGAAGAAGTGAAGCTTGTGATATTATATTATTTAAAAA AAAATGTGGAGATTGTGATATGTAAGTTTTCGAATAAGTGTGCATCGTGATGATCTGATA TATTCAGATCTTCTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13777#2      ------------------------------------------------------------
consensus_13777#4      ------------------------------------------------------------
consensus_13777#1      ------------------------------------------------------------
consensus_13777#0      GGTAACCCCTGCAGGTTACCCGGTTCCGGAAATTCCCCGGGTTCGACCCACGCGTTCCGG 60
consensus_13777#3      ------------------------------------------------------------
consensus_13777#5      ------------------------------------------------------------
                                                                                   

consensus_13777#2      ------------CCAGCGCAAGAATGGCATCCAGCTGTTCCAACCGTGTCTCCTCCTCCA 48
consensus_13777#4      ------------------------------------------------------------
consensus_13777#1      ------------------------------------------------------------
consensus_13777#0      ATATGATAGACCCAAACGCAAGAATGGCATCCAGCTGTTCCAACCGTGGTCTCCTCCTCC 120
consensus_13777#3      ------------------------------------------------------------
consensus_13777#5      ------------------------------------------------------------
                                                                                   

consensus_13777#2      TCCTCGCTTCCGCCGTCCTCCTCTCCG--CCTCCCACCAGCCACCGCTGGGAGTGGGAGA 106
consensus_13777#4      ------------------------------------------------------------
consensus_13777#1      ----CGTCCTCCTCTCCAGGCCTTCAG--CCAGCCGGCA--CGCCGCTGGGAGTGGGAGA 52
consensus_13777#0      TCCTCGCTTCCGCCGTCCTCCTCTCCGGCCTCGCCGCCGGCCGCCGCTGGGAGTGGGAGA 180
consensus_13777#3      ------------------------------------------------------------
consensus_13777#5      ------------------------------------------------------------
                                                                                   

consensus_13777#2      GTCAGTGCCAGCCGTGGGAGGCCTTCCC--GCACAACCCGCTCTC---CAGGC-TGCACG 160
consensus_13777#4      ------------------------------------------------------------
consensus_13777#1      GTCAGTGCCAGCCGTGGGAGCCTTTCTCCAGCACAACCCAGCTTCATCCAGGCATGCCAG 112
consensus_13777#0      GTCAGTGCCAGCCGTGGGAGGCCTTCCC--GCACAACCCGCTCTC----CGGC-TGC-CG 232
consensus_13777#3      ---------------------------------------------------GGCTCCCTG 9
consensus_13777#5      ------------------------------------------------------------
                                                                                   

consensus_13777#2      CGGCTAC---GTGATCA-GCCAGCAGCCTGC---CCAGGGC-CACAGG-CCAGCACC--- 208
consensus_13777#4      ---CTAC---GTGATCA-GCCTGCAGCCTGC---CCAGGGCACACGGT-CCAGCATCACA 49
consensus_13777#1      CAGGCATACAGTGATCAAGCCAGCAGCACATGCACCAGGGCACACAGGGCCAGCAGCACA 172
consensus_13777#0      CGGCTAC---GTGATCA-GCC-GC-GCCTGC----CCGGGC-CACGG---CCGCGCC--- 275
consensus_13777#3      CAGGCTTAACGTGGATCTACCGCGCCCTTGC--ACCAGGGC-CACAGGGCCCGCGCCG-- 64
consensus_13777#5      ------------------------------------------------------------
                                                                                   

consensus_13777#2      GCCCA--GGAGATGGCACAAGGCGCAGGTGCATGCCAGCAGAGC-TCGCCA--GC-CAGT 262
consensus_13777#4      GCCAC--GGAGATGGC-CAAGGCAGCGGTGC-TGCCGC--GAGC-TCGCCA--GC-CAGT 99
consensus_13777#1      GCACACAGGAGATGGCACAAGGCAGCGGTGCATGCCAGCAGAGCATCAGCACAGCACAGT 232
consensus_13777#0      GCCC---GGAGATGGC-CAAGGCG-CGGTGC-TGCCGC--GAGC-TCGCCG-----CCGT 321
consensus_13777#3      CCCCGGTAGATTGGCCACATAGGCACGGTTGCTTCCGCCGATGCTTTTCCT---CCATGT 121
consensus_13777#5      -----------------------------------------------TCCC---CCCCGT 10
                                                                        *        **

consensus_13777#2      CCA-GCCAGC-GC-TGCCAG-GTGC-GAGGCAGCATGCAGGCATGTTCA-TGGACAGGCA 316
consensus_13777#4      CCA-GCCAGCAGC-TGCCAGAGTGCAGAGGCAGC-TGC-GGCATGTTCA-TGGACAGGC- 153
consensus_13777#1      CCAAGCCAGCAGCATGCACAGGTGC-GAGGCAGCATGCAGGCATGTTCAATGGACAGGC- 290
consensus_13777#0      CCA-GCC-GC-GC-TGCCGG--TGC-GAGGC-GC-TGC-GGC-TGTTCA-TGGAC-GGC- 367
consensus_13777#3      CCAGGCCAGCTGC-TGCCACGGTGC-GAGGCAGC-TTCAGGCATGTTCA-TGGACAGGCA 177
consensus_13777#5      CCA--CCCGC-----GCC-CGGTGC-GAGGC-GC-TGC--GCCTGTTCA-TGGACGGC-- 54
                       ***  ** **     **     *** ***** ** * *  ** ****** ***** *   

consensus_13777#2      GTGGGCAGAGCATGCAGC--GGGTGCCAC-GAGGGAGGCAGCAGAGGGCACA-GCACA-G 371
consensus_13777#4      GTGGGCAGAGCATGCGCA--GGGTGCCAC-AGAGGGAGGCGCAGAGGGC-CA-GC-CA-G 206
consensus_13777#1      GTGGGCGAAGCATGCAGCA-GGGTGCCACAGAGGGAGGCAGCAGAGGGCACA-GCACA-G 347
consensus_13777#0      GTGGGCGAGCTGCGC-----GGGTGCCC--GAGGGAGGC-GCAGAGGGC-CG-CCGCC-G 416
consensus_13777#3      GTGGGCAGAGC-TGCACGCAGGGTGCCACAGAGGGAGGCCGCAAGAGGGCCACGCACATG 236
consensus_13777#5      GTGGGC-GAGC-TGCGC---GGGTGCCC--GAGGGAGGCC-CAGAGGCCCCCCCCGCGCT 106
                       ******       **     *******      **  *   **   *   *   * *   

consensus_13777#2      CACAGC-CAGCAGCT-CATGGCAGGC-GGGGGAGTGC-GACC-TG-CGGGGTGGCTCC-- 423
consensus_13777#4      CCAGCA-CAGC-GCT-CATGGCGGCA-GGGGGAGTGC-GACC-TGTCGGGGTGGCTCC-- 258
consensus_13777#1      CACAGCACAGCAGCT-CATGGCAGGC-GGGGGAGTGCAGACCATGCCGGGGTGGCATCAC 405
consensus_13777#0      CC-------GC-GCT-CATGGC-GGC-GGGGGAGTGC-GACC-TG-CGGGGTGGCTCC-- 460
consensus_13777#3      CACACGCCAGCAGCTTCATGGCGGGCAGGGGGAGTGCAGACCTTGCAGGGGTGGCTCC-- 294
consensus_13777#5      CATGCGC--------------------GGGGGAGTGC-GACCCTGCCGGGGTGGCTCC-- 143
                       *                          ********** **** **  ********  *  

consensus_13777#2      -GGCGAGAC-GGAGCGG-TGCTAC-TGGCCAT-GGC-TCGTC-GGCGACGGC--GATGTG 474
consensus_13777#4      -GACGAGAC-GGAGCGGGTGCTAC-TGGCCAT-GGC-TCGTC-GGCGACGGC--GATGTG 310
consensus_13777#1      AGGCGAGACAGGAGCAGGTGCTACATGGCCATTGGCATCGTCAGGCGACAGGCAGATGTG 465
consensus_13777#0      -GGCGAGAC-GGAGCGG-TGCTAC-TGGCCAT-GGC-TCGTC-GGCGACGGC--GATGTG 511
consensus_13777#3      -GGCGAGAC-GGACAGG-TGCTAC-TGGCCACTGGC-TCGTCGGCAGACAGGC-GATGTG 348
consensus_13777#5      -GGCGAGAC-GGAGCGG-TGCTAC-TG-CCAT--GC-TCGTCGGC-GAC-GGC-GATGT- 191
                        * ****** ***   * ****** ** ***   ** ***** *  *** *   ***** 

consensus_13777#2      CCA-GTGTACTGAGAAGAAGTGAAGC-TTGTGATATTATATTATTTTCA-AAAA------ 525
consensus_13777#4      CCA-GTGTACTGAGAAGAAGTGAAGC-TTGTGATATTATATTATTTTCA-AAAAA----- 362
consensus_13777#1      CCAAGTGTACTGAGAAGAAGTGAAGC-TTGTGATATTATATTATTTTCA-AAAAAAAAAT 523
consensus_13777#0      CCA-GTGTACTGAGAAGAAGTGAAGC-TTGTGATATTATATTATTTTCA-AAAAAAAAAT 568
consensus_13777#3      CCA-GTGTACTGAGAAGAAGTGAAGCATTGTGATATTATATTATTTTCAAAAAAAAAAAT 407
consensus_13777#5      CCA-GTGTACTGAGAAGAAGTGAAGC-TTGTGATATTATATTATTT----AAAAAAAAAT 245
                       *** ********************** *******************    ****      

consensus_13777#2      ------------------------------------------------------------
consensus_13777#4      ------------------------------------------------------------
consensus_13777#1      GTGGAGATTGTGATATGTAAGTTTTCGAATAAAGTGTTGCATCGGTGGATTGATCTGATA 583
consensus_13777#0      GTGGAGATTGTGATATGTAAGTTTTCGAATAAAGTGTTGCATCGGTGGATTGATCTGATA 628
consensus_13777#3      GTGGAGATTGTGATATGTAAGTTTTCAGAATAAAT-TTGCATCGGTGGATTGATCTGATA 466
consensus_13777#5      GTGGAGATTGTGATATGTAAGTTTTC-GAATAAGT-GTGCATCG-TGA--TGATCTGATA 300
                                                                                   

consensus_13777#2      ------------------------------------------------------------
consensus_13777#4      ------------------------------------------------------------
consensus_13777#1      AAAAAAA----------------------------------------------------- 590
consensus_13777#0      TATTCAGATCGTCTCATTCAAATGCTTGCGAACTGAATTAATATTAAACGAATAATTGAA 688
consensus_13777#3      TATTCAGATCGTCTCATTCCAAAAAAAAAA------------------------------ 496
consensus_13777#5      TATTCAGATCTTCTC--------------------------------------------- 315
                                                                                   

consensus_13777#2      ------------------------------------------------------------
consensus_13777#4      ------------------------------------------------------------
consensus_13777#1      ------------------------------------------------------------
consensus_13777#0      TTAATATTAAAAAAAAAAAAAGCGGCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTT 748
consensus_13777#3      ------------------------------------------------------------
consensus_13777#5      ------------------------------------------------------------
                                                                                   

consensus_13777#2      ------------------------------------------------------------
consensus_13777#4      ------------------------------------------------------------
consensus_13777#1      ------------------------------------------------------------
consensus_13777#0      TTTTTTTTTTTTTTTTATAGTAACTTGTAAAAGATTAGGAGTATCAAAAAGGCAGGCACG 808
consensus_13777#3      ------------------------------------------------------------
consensus_13777#5      ------------------------------------------------------------
                                                                                   

consensus_13777#2      ------------------------------------------------------------
consensus_13777#4      ------------------------------------------------------------
consensus_13777#1      ------------------------------------------------------------
consensus_13777#0      CATCATGCAAGATTCTGAGCCATCATACGATGGAGAAAAGTACAGCAGCTCACTCAGTCG 868
consensus_13777#3      ------------------------------------------------------------
consensus_13777#5      ------------------------------------------------------------
                                                                                   

consensus_13777#2      ----------
consensus_13777#4      ----------
consensus_13777#1      ----------
consensus_13777#0      CCAAAAAAAA 878
consensus_13777#3      ----------
consensus_13777#5      ----------
                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)