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Oryza sativa
cluster # 1378 cluster # 1378       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1378#0 length = 1011 sequences # 1  
consensus_1378#1 length = 838 sequences # 1  

consensusID : consensus_1378#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1011
fasta sequence
                              [CCAAGCCCAACAACACACGGCGCCGCCCACCCATCCACACACCCACCGGCACACGCAACGCCATCATCGTCGCTCGTAGCAGCAGTAGCGTACCACACTTCGCACCGCGATCGTCCGTGTTTGTGTCGTCCACGGGAAGGGACCGAGAGGCTTGGAGGAAAGGAGGGGAGACTCACTCGGCATGGATTTGTACGGCGCGGCGGCGGGCGGGGGACCGGTGGCGAGGCGACCGTGGAGCAAGGTGGAGGACAAGGTGTTCGAGAGCGCGCTGGTGCTGTGCCCGGAGGACGTCCCCGACCGGTGGGCGCTCGTCGCGGCGCAGCTCCCAGGGCGCACGCCGCAGGAGGCCTTGGAGCACTACCAGGTGCTCGTCGCCGACATCGATCTCATCATGCGCGGCGAGGAGCGGCGCCGCGGCGTACCCTGGTCCGAAGACGAGCACAGGTTGTTTCTCGAGGGGTTGGACAGGTACGGGCGGGGAGACTGGAGGAACATCTCGCGGTTCTCGGTGAGGACGCGGACGCCGACGCAGGTGGCGAGCCACGCGCAGAAGTACTTCATCCGGCAGGCCAACGCCGGCGCCCGCGACTCCAAGCGCAAGAGCATCCATGACATCACCACCCCTTGACCAGCGTCGGCGACGGCGACCCACCCCCTTTCTTTGCAACTCTTTGGATTAAGTGAAACAAGCAAGGGGTAGGCGATGACGTGTACATTATATCCTACACCACAACATAGGCAAGTAGTACTGTCAAACCGTTTGTCACTTGGGGCTCTCTGATCCATAACCGTGGACGGCCTACTTGCCGGAAACAGAGGCTGTTGAGAGCTCCGGTCGGCACACGGTTTGGGCTTTAGGTTTTTCAGCATTAATTAGGATTAGCTAAGTCAGGGACTAATGGGGTTTGACGTGGCAACGTCGTGTCTAGGTTTGGTTGATGCAGACGAAGATGTCACTGTTAATATGGGTTTTGTGCTTTTGTTTTGATGAATGATGCTGTCGAAATCATT]

[+] EMBL AK111571             [CCAAGCCCAACAACACACGGCGCCGCCCACCCATCCACACACCCACCGGCACACGCAACGCCATCATCGTCGCTCGTAGCAGCAGTAGCGTACCACACTTCGCACCGCGATCGTCCGTGTTTGTGTCGTCCACGGGAAGGGACCGAGAGGCTTGGAGGAAAGGAGGGGAGACTCACTCGGCATGGATTTGTACGGCGCGGCGGCGGGCGGGGGACCGGTGGCGAGGCGACCGTGGAGCAAGGTGGAGGACAAGGTGTTCGAGAGCGCGCTGGTGCTGTGCCCGGAGGACGTCCCCGACCGGTGGGCGCTCGTCGCGGCGCAGCTCCCAGGGCGCACGCCGCAGGAGGCCTTGGAGCACTACCAGGTGCTCGTCGCCGACATCGATCTCATCATGCGCGGCGAGGAGCGGCGCCGCGGCGTACCCTGGTCCGAAGACGAGCACAGGTTGTTTCTCGAGGGGTTGGACAGGTACGGGCGGGGAGACTGGAGGAACATCTCGCGGTTCTCGGTGAGGACGCGGACGCCGACGCAGGTGGCGAGCCACGCGCAGAAGTACTTCATCCGGCAGGCCAACGCCGGCGCCCGCGACTCCAAGCGCAAGAGCATCCATGACATCACCACCCCTTGACCAGCGTCGGCGACGGCGACCCACCCCCTTTCTTTGCAACTCTTTGGATTAAGTGAAACAAGCAAGGGGTAGGCGATGACGTGTACATTATATCCTACACCACAACATAGGCAAGTAGTACTGTCAAACCGTTTGTCACTTGGGGCTCTCTGATCCATAACCGTGGACGGCCTACTTGCCGGAAACAGAGGCTGTTGAGAGCTCCGGTCGGCACACGGTTTGGGCTTTAGGTTTTTCAGCATTAATTAGGATTAGCTAAGTCAGGGACTAATGGGGTTTGACGTGGCAACGTCGTGTCTAGGTTTGGTTGATGCAGACGAAGATGTCACTGTTAATATGGGTTTTGTGCTTTTGTTTTGATGAATGATGCTGTCGAAATCATT]


>consensus_1378#0 CCAAGCCCAACAACACACGGCGCCGCCCACCCATCCACACACCCACCGGCACACGCAACG CCATCATCGTCGCTCGTAGCAGCAGTAGCGTACCACACTTCGCACCGCGATCGTCCGTGT TTGTGTCGTCCACGGGAAGGGACCGAGAGGCTTGGAGGAAAGGAGGGGAGACTCACTCGG CATGGATTTGTACGGCGCGGCGGCGGGCGGGGGACCGGTGGCGAGGCGACCGTGGAGCAA GGTGGAGGACAAGGTGTTCGAGAGCGCGCTGGTGCTGTGCCCGGAGGACGTCCCCGACCG GTGGGCGCTCGTCGCGGCGCAGCTCCCAGGGCGCACGCCGCAGGAGGCCTTGGAGCACTA CCAGGTGCTCGTCGCCGACATCGATCTCATCATGCGCGGCGAGGAGCGGCGCCGCGGCGT ACCCTGGTCCGAAGACGAGCACAGGTTGTTTCTCGAGGGGTTGGACAGGTACGGGCGGGG AGACTGGAGGAACATCTCGCGGTTCTCGGTGAGGACGCGGACGCCGACGCAGGTGGCGAG CCACGCGCAGAAGTACTTCATCCGGCAGGCCAACGCCGGCGCCCGCGACTCCAAGCGCAA GAGCATCCATGACATCACCACCCCTTGACCAGCGTCGGCGACGGCGACCCACCCCCTTTC TTTGCAACTCTTTGGATTAAGTGAAACAAGCAAGGGGTAGGCGATGACGTGTACATTATA TCCTACACCACAACATAGGCAAGTAGTACTGTCAAACCGTTTGTCACTTGGGGCTCTCTG ATCCATAACCGTGGACGGCCTACTTGCCGGAAACAGAGGCTGTTGAGAGCTCCGGTCGGC ACACGGTTTGGGCTTTAGGTTTTTCAGCATTAATTAGGATTAGCTAAGTCAGGGACTAAT GGGGTTTGACGTGGCAACGTCGTGTCTAGGTTTGGTTGATGCAGACGAAGATGTCACTGT TAATATGGGTTTTGTGCTTTTGTTTTGATGAATGATGCTGTCGAAATCATT



consensusID : consensus_1378#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 838
fasta sequence
                              [CGCCGCAACCCCCGGCGAGGACCGGCACCCGGCGTACCCTGGTCCGAAGACGAGCACAGTTGTTTCTCGAGGGGTTGGACAGGTACGGGCGGGGAGACTGGAGGAACATCTCGCGGTTCTCGGTGAGGACCGCGGACGCCGACAGCAGGGTGGCAGACGCCAACAGCGCAAGAAGTACTTGCATGCCCGCGCAAGCCAAACGCCCGGCAGCCACAGCAGACTGCACATAGCGCAAAGAGCATCCATGACATCCACCAACCCCCTTGAACCAGGCTGTCGGGCCGGACCGGGCCGAACCACCCCAACCCCCCCCCTGTGTGTCCTGTTGCCCAAAACCTTGCCTTTTTGGGAATTTTATAAAGGTTGGAAAAAACCAAAGCCAAAGGGGGGGTTAAGGCCGGAATTGGAACCGGTTGGTTAACCAATTTTAATAATGCCCTTAACCACCCCACCCAAACCAATTAAGGGCCATAAGTTTAAGGTTAACCTTGTGCCAAAAAACCCGTTTTGTTCCACCTTTGGGGCCTTCCTTCCTGGAATCCCAATTAAACCCGTTGGAACCGGCCCTTAACCTTTGCCCCGGAAAACCAAGGAAGGCCTTGTTTGAAGGAAGCCTTCCCGCTCCGGCCAACCACCGGTTTTTGGCCTTTTAAGTTTTTCCAACCATTAATTAAGAATTAACTTAATTCCCAAGAACTTAATGGGGTTTTAACCGTGGCCAACCTTCCGTTCTTAAGTTTTGTGAATCCAAGGCCGAAGAAGCCCCGGTTAATATGGTTTTTGTGCCTTTGTTTTGGAAGGAATGAAGCCTGTCCGAAACCATTTAACCATAGCCAAA]

[+] EMBL BI800140             [CGCCGCAACCCCCGGCGAGGACCGGCACCCGGCGTACCCTGGTCCGAAGACGAGCACAGTTGTTTCTCGAGGGGTTGGACAGGTACGGGCGGGGAGACTGGAGGAACATCTCGCGGTTCTCGGTGAGGACCGCGGACGCCGACAGCAGGGTGGCAGACGCCAACAGCGCAAGAAGTACTTGCATGCCCGCGCAAGCCAAACGCCCGGCAGCCACAGCAGACTGCACATAGCGCAAAGAGCATCCATGACATCCACCAACCCCCTTGAACCAGGCTGTCGGGCCGGACCGGGCCGAACCACCCCAACCCCCCCCCTGTGTGTCCTGTTGCCCAAAACCTTGCCTTTTTGGGAATTTTATAAAGGTTGGAAAAAACCAAAGCCAAAGGGGGGGTTAAGGCCGGAATTGGAACCGGTTGGTTAACCAATTTTAATAATGCCCTTAACCACCCCACCCAAACCAATTAAGGGCCATAAGTTTAAGGTTAACCTTGTGCCAAAAAACCCGTTTTGTTCCACCTTTGGGGCCTTCCTTCCTGGAATCCCAATTAAACCCGTTGGAACCGGCCCTTAACCTTTGCCCCGGAAAACCAAGGAAGGCCTTGTTTGAAGGAAGCCTTCCCGCTCCGGCCAACCACCGGTTTTTGGCCTTTTAAGTTTTTCCAACCATTAATTAAGAATTAACTTAATTCCCAAGAACTTAATGGGGTTTTAACCGTGGCCAACCTTCCGTTCTTAAGTTTTGTGAATCCAAGGCCGAAGAAGCCCCGGTTAATATGGTTTTTGTGCCTTTGTTTTGGAAGGAATGAAGCCTGTCCGAAACCATTTAACCATAGCCAAA]


>consensus_1378#1 CGCCGCAACCCCCGGCGAGGACCGGCACCCGGCGTACCCTGGTCCGAAGACGAGCACAGT TGTTTCTCGAGGGGTTGGACAGGTACGGGCGGGGAGACTGGAGGAACATCTCGCGGTTCT CGGTGAGGACCGCGGACGCCGACAGCAGGGTGGCAGACGCCAACAGCGCAAGAAGTACTT GCATGCCCGCGCAAGCCAAACGCCCGGCAGCCACAGCAGACTGCACATAGCGCAAAGAGC ATCCATGACATCCACCAACCCCCTTGAACCAGGCTGTCGGGCCGGACCGGGCCGAACCAC CCCAACCCCCCCCCTGTGTGTCCTGTTGCCCAAAACCTTGCCTTTTTGGGAATTTTATAA AGGTTGGAAAAAACCAAAGCCAAAGGGGGGGTTAAGGCCGGAATTGGAACCGGTTGGTTA ACCAATTTTAATAATGCCCTTAACCACCCCACCCAAACCAATTAAGGGCCATAAGTTTAA GGTTAACCTTGTGCCAAAAAACCCGTTTTGTTCCACCTTTGGGGCCTTCCTTCCTGGAAT CCCAATTAAACCCGTTGGAACCGGCCCTTAACCTTTGCCCCGGAAAACCAAGGAAGGCCT TGTTTGAAGGAAGCCTTCCCGCTCCGGCCAACCACCGGTTTTTGGCCTTTTAAGTTTTTC CAACCATTAATTAAGAATTAACTTAATTCCCAAGAACTTAATGGGGTTTTAACCGTGGCC AACCTTCCGTTCTTAAGTTTTGTGAATCCAAGGCCGAAGAAGCCCCGGTTAATATGGTTT TTGTGCCTTTGTTTTGGAAGGAATGAAGCCTGTCCGAAACCATTTAACCATAGCCAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1378#0      CCAAGCCCAACAACACACGGCGCCGCCCACCCATCCACACACCCACCGGCACACGCAACG 60
consensus_1378#1      ------------------------------------------------------------
                                                                                  

consensus_1378#0      CCATCATCGTCGCTCGTAGCAGCAGTAGCGTACCACACTTCGCACCGCGATCGTCCGTGT 120
consensus_1378#1      ------------------------------------------------------------
                                                                                  

consensus_1378#0      TTGTGTCGTCCACGGGAAGGGACCGAGAGGCTTGGAGGAAAGGAGGGGAGACTCACTCGG 180
consensus_1378#1      ---------------------------------------------CGCCGCAACCCCCGG 15
                                                                    *  *   * * ***

consensus_1378#0      CATGGATTTGTACGGCGCGGCGGCGGGCGGGGGACCGGTGGCGAG-GCGACCGTGGAGCA 239
consensus_1378#1      CGAGGACCGGCACC------CGGCGTACCCTGGTCCGAAGACGAGCACAGTTGTTTCTCG 69
                      *  ***   * **       *****  *   ** ***  * ****  *    **    * 

consensus_1378#0      AGGTGGAGGACAAGGTGTTCGAGAGCGCGCTGGTGCTGTGCCCGGAGGACGTCCCCGACC 299
consensus_1378#1      AGGGGTTGGACA-GGTACGGGCGGGGAGACTGGAGGAACATCTCGCGGTTCTCGGTGA-- 126
                      *** *  ***** ***    * * *    **** *      *  * **   **   **  

consensus_1378#0      GGTGGGCGCTCGTCG-CGGCGCAGCTCCCAGGGCGCACGCCGCAGGAGGCCTTGGAGCAC 358
consensus_1378#1      GGACCGCGGACGCCGACAGCAGGGTGGCAGACGCCAACAGCGCAAGAAGTACTTGCATGC 186
                      **   ***  ** ** * **   *   *    **  **  **** ** *   * *    *

consensus_1378#0      TACCAGGTGCTCGTCGCC-GACATCGATCTCATCATGCGCG--GCGAGGAGCGGCGCCGC 415
consensus_1378#1      CCGCGCAAGCCAAACGCCCGGCAGCCACAGCAGACTGCACATAGCGCAAAGAGCATCCAT 246
                         *    **    **** * ** * *   **   *** *   ***   ** *   **  

consensus_1378#0      GGCGTACCCTGGTCCGAAGACGAGCACAGGTTGTTTCTCGAGGGGTTGGACAGGTACGGG 475
consensus_1378#1      GACATCCACCAACCCCCT--TGAAC-CAGGCTGTC-------GGGCCGGAC-----CGGG 291
                      * * * * *    **      ** * **** ***        ***  ****     ****

consensus_1378#0      CGGGGAGACTGGAGGAACATCTCGCGGTTCTCGGTGAGGACGCGGACGCCGACGCAGGTG 535
consensus_1378#1      CCGAACCACCCCAACCCCCCCCCTGTGTGTCCTGTTG---CCCAAAACCTTGCCTTTTTG 348
                      * *    **   *    *  * *   **   * **     * *  *  *   *     **

consensus_1378#0      GCGAGCCACGCGCAGAAGTACTTCATCCGGCAGGCCAACGCCGGCGCCCGCGACTCCAAG 595
consensus_1378#1      GGAATTT---TATAAAGGT------TGGAAAAAACCAAAGCCAAAGGGGG-GGTTAAGGC 398
                      *  *         * * **      *     *  **** ***   *   * *  *     

consensus_1378#0      CGCAAGAGCATCCATGACATCACCACCCCTTGACCAGCGTCGGCGACGGCGACCCACCCC 655
consensus_1378#1      CGGAATTGGAACCGGTTGGTTAAC-CAATTTTAATAATGCCCTTAAC--CACCCCACCCA 455
                      ** **  * * **      * * * *   ** *  *  * *    **  *  ******* 

consensus_1378#0      CTTTCTTTGCAACTCTTTGGATTAAG-TGAAACAAGCAAGGGGTAGGCGATGACGTGTA- 713
consensus_1378#1      AACCAATTAAGGGCCATAAGTTTAAGGTTAACCTTGTGCCAAAAAACCCGTTTTGTTCCA 515
                            **      * *  * ***** * ** *  *        *  *  *   **    

consensus_1378#0      -CATTATATCCTACACCACAACATAGGCAAGTAGTACTGTCAAACCGTTTGTCACTTGGG 772
consensus_1378#1      CCTTTGGGGCCTTCCTTCCTGGAATCCCAATTAAACCCGTTGGAAC---CGGCCCTTAA- 571
                       * **    *** *    *   *    *** **   * **   * *    * * ***   

consensus_1378#0      GCTCTCTGATCC--ATAACCGTGGACGGCCTACTTGCCGGAAACAGAGGCTGTTGAGAGC 830
consensus_1378#1      --CCTTTGCCCCGGAAAACCAAGGAAGGCCT---TGTTTGAAG--GAAGCCTTCCC--GC 622
                         ** **  **  * ****  *** *****   **   ***   ** **  *     **

consensus_1378#0      TCCGGTCGGCACACGGTTTGGG---CTTTAGGTTTTTC--AGCATTAATTAGGA-TTAGC 884
consensus_1378#1      TCCGGCCAACCACCGGTTTTTGGCCTTTTAAGTTTTTCCAACCATTAATTAAGAATTAAC 682
                      ***** *  *   ******  *    **** *******  * ********* ** *** *

consensus_1378#0      TAAGT---CAGGGACT-AATGGGGTTTGA--CGTGGC-AACGT--CGTGTCTAGGTTTGG 935
consensus_1378#1      TTAATTCCCAAGAACTTAATGGGGTTTTAACCGTGGCCAACCTTCCGTTCTTAAGTTTTG 742
                      * * *   ** * *** ********** *  ****** *** *  ***   ** **** *

consensus_1378#0      TTGATGCAGA--CGAAGATGTCACTGTTAATATGGGTTTTGTGCTTTTGTTTTG--ATGA 991
consensus_1378#1      TGAATCCAAGGCCGAAGAAGCCCCGGTTAATATGGTTTTTGTGCCTTTGTTTTGGAAGGA 802
                      *  ** **    ****** * * * ********** ******** *********  * **

consensus_1378#0      ATGATGC-TGTC-GAAATCATT-------------- 1011
consensus_1378#1      ATGAAGCCTGTCCGAAACCATTTAACCATAGCCAAA 838
                      **** ** **** **** ****              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)