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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1378#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1011 fasta sequence
[CCAAGCCCAACAACACACGGCGCCGCCCACCCATCCACACACCCACCGGCACACGCAACGCCATCATCGTCGCTCGTAGCAGCAGTAGCGTACCACACTTCGCACCGCGATCGTCCGTGTTTGTGTCGTCCACGGGAAGGGACCGAGAGGCTTGGAGGAAAGGAGGGGAGACTCACTCGGCATGGATTTGTACGGCGCGGCGGCGGGCGGGGGACCGGTGGCGAGGCGACCGTGGAGCAAGGTGGAGGACAAGGTGTTCGAGAGCGCGCTGGTGCTGTGCCCGGAGGACGTCCCCGACCGGTGGGCGCTCGTCGCGGCGCAGCTCCCAGGGCGCACGCCGCAGGAGGCCTTGGAGCACTACCAGGTGCTCGTCGCCGACATCGATCTCATCATGCGCGGCGAGGAGCGGCGCCGCGGCGTACCCTGGTCCGAAGACGAGCACAGGTTGTTTCTCGAGGGGTTGGACAGGTACGGGCGGGGAGACTGGAGGAACATCTCGCGGTTCTCGGTGAGGACGCGGACGCCGACGCAGGTGGCGAGCCACGCGCAGAAGTACTTCATCCGGCAGGCCAACGCCGGCGCCCGCGACTCCAAGCGCAAGAGCATCCATGACATCACCACCCCTTGACCAGCGTCGGCGACGGCGACCCACCCCCTTTCTTTGCAACTCTTTGGATTAAGTGAAACAAGCAAGGGGTAGGCGATGACGTGTACATTATATCCTACACCACAACATAGGCAAGTAGTACTGTCAAACCGTTTGTCACTTGGGGCTCTCTGATCCATAACCGTGGACGGCCTACTTGCCGGAAACAGAGGCTGTTGAGAGCTCCGGTCGGCACACGGTTTGGGCTTTAGGTTTTTCAGCATTAATTAGGATTAGCTAAGTCAGGGACTAATGGGGTTTGACGTGGCAACGTCGTGTCTAGGTTTGGTTGATGCAGACGAAGATGTCACTGTTAATATGGGTTTTGTGCTTTTGTTTTGATGAATGATGCTGTCGAAATCATT]
[+] EMBL AK111571 [CCAAGCCCAACAACACACGGCGCCGCCCACCCATCCACACACCCACCGGCACACGCAACGCCATCATCGTCGCTCGTAGCAGCAGTAGCGTACCACACTTCGCACCGCGATCGTCCGTGTTTGTGTCGTCCACGGGAAGGGACCGAGAGGCTTGGAGGAAAGGAGGGGAGACTCACTCGGCATGGATTTGTACGGCGCGGCGGCGGGCGGGGGACCGGTGGCGAGGCGACCGTGGAGCAAGGTGGAGGACAAGGTGTTCGAGAGCGCGCTGGTGCTGTGCCCGGAGGACGTCCCCGACCGGTGGGCGCTCGTCGCGGCGCAGCTCCCAGGGCGCACGCCGCAGGAGGCCTTGGAGCACTACCAGGTGCTCGTCGCCGACATCGATCTCATCATGCGCGGCGAGGAGCGGCGCCGCGGCGTACCCTGGTCCGAAGACGAGCACAGGTTGTTTCTCGAGGGGTTGGACAGGTACGGGCGGGGAGACTGGAGGAACATCTCGCGGTTCTCGGTGAGGACGCGGACGCCGACGCAGGTGGCGAGCCACGCGCAGAAGTACTTCATCCGGCAGGCCAACGCCGGCGCCCGCGACTCCAAGCGCAAGAGCATCCATGACATCACCACCCCTTGACCAGCGTCGGCGACGGCGACCCACCCCCTTTCTTTGCAACTCTTTGGATTAAGTGAAACAAGCAAGGGGTAGGCGATGACGTGTACATTATATCCTACACCACAACATAGGCAAGTAGTACTGTCAAACCGTTTGTCACTTGGGGCTCTCTGATCCATAACCGTGGACGGCCTACTTGCCGGAAACAGAGGCTGTTGAGAGCTCCGGTCGGCACACGGTTTGGGCTTTAGGTTTTTCAGCATTAATTAGGATTAGCTAAGTCAGGGACTAATGGGGTTTGACGTGGCAACGTCGTGTCTAGGTTTGGTTGATGCAGACGAAGATGTCACTGTTAATATGGGTTTTGTGCTTTTGTTTTGATGAATGATGCTGTCGAAATCATT]
consensusID : consensus_1378#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 838 fasta sequence
[CGCCGCAACCCCCGGCGAGGACCGGCACCCGGCGTACCCTGGTCCGAAGACGAGCACAGTTGTTTCTCGAGGGGTTGGACAGGTACGGGCGGGGAGACTGGAGGAACATCTCGCGGTTCTCGGTGAGGACCGCGGACGCCGACAGCAGGGTGGCAGACGCCAACAGCGCAAGAAGTACTTGCATGCCCGCGCAAGCCAAACGCCCGGCAGCCACAGCAGACTGCACATAGCGCAAAGAGCATCCATGACATCCACCAACCCCCTTGAACCAGGCTGTCGGGCCGGACCGGGCCGAACCACCCCAACCCCCCCCCTGTGTGTCCTGTTGCCCAAAACCTTGCCTTTTTGGGAATTTTATAAAGGTTGGAAAAAACCAAAGCCAAAGGGGGGGTTAAGGCCGGAATTGGAACCGGTTGGTTAACCAATTTTAATAATGCCCTTAACCACCCCACCCAAACCAATTAAGGGCCATAAGTTTAAGGTTAACCTTGTGCCAAAAAACCCGTTTTGTTCCACCTTTGGGGCCTTCCTTCCTGGAATCCCAATTAAACCCGTTGGAACCGGCCCTTAACCTTTGCCCCGGAAAACCAAGGAAGGCCTTGTTTGAAGGAAGCCTTCCCGCTCCGGCCAACCACCGGTTTTTGGCCTTTTAAGTTTTTCCAACCATTAATTAAGAATTAACTTAATTCCCAAGAACTTAATGGGGTTTTAACCGTGGCCAACCTTCCGTTCTTAAGTTTTGTGAATCCAAGGCCGAAGAAGCCCCGGTTAATATGGTTTTTGTGCCTTTGTTTTGGAAGGAATGAAGCCTGTCCGAAACCATTTAACCATAGCCAAA]
[+] EMBL BI800140 [CGCCGCAACCCCCGGCGAGGACCGGCACCCGGCGTACCCTGGTCCGAAGACGAGCACAGTTGTTTCTCGAGGGGTTGGACAGGTACGGGCGGGGAGACTGGAGGAACATCTCGCGGTTCTCGGTGAGGACCGCGGACGCCGACAGCAGGGTGGCAGACGCCAACAGCGCAAGAAGTACTTGCATGCCCGCGCAAGCCAAACGCCCGGCAGCCACAGCAGACTGCACATAGCGCAAAGAGCATCCATGACATCCACCAACCCCCTTGAACCAGGCTGTCGGGCCGGACCGGGCCGAACCACCCCAACCCCCCCCCTGTGTGTCCTGTTGCCCAAAACCTTGCCTTTTTGGGAATTTTATAAAGGTTGGAAAAAACCAAAGCCAAAGGGGGGGTTAAGGCCGGAATTGGAACCGGTTGGTTAACCAATTTTAATAATGCCCTTAACCACCCCACCCAAACCAATTAAGGGCCATAAGTTTAAGGTTAACCTTGTGCCAAAAAACCCGTTTTGTTCCACCTTTGGGGCCTTCCTTCCTGGAATCCCAATTAAACCCGTTGGAACCGGCCCTTAACCTTTGCCCCGGAAAACCAAGGAAGGCCTTGTTTGAAGGAAGCCTTCCCGCTCCGGCCAACCACCGGTTTTTGGCCTTTTAAGTTTTTCCAACCATTAATTAAGAATTAACTTAATTCCCAAGAACTTAATGGGGTTTTAACCGTGGCCAACCTTCCGTTCTTAAGTTTTGTGAATCCAAGGCCGAAGAAGCCCCGGTTAATATGGTTTTTGTGCCTTTGTTTTGGAAGGAATGAAGCCTGTCCGAAACCATTTAACCATAGCCAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1378#0 CCAAGCCCAACAACACACGGCGCCGCCCACCCATCCACACACCCACCGGCACACGCAACG 60
consensus_1378#1 ------------------------------------------------------------
consensus_1378#0 CCATCATCGTCGCTCGTAGCAGCAGTAGCGTACCACACTTCGCACCGCGATCGTCCGTGT 120
consensus_1378#1 ------------------------------------------------------------
consensus_1378#0 TTGTGTCGTCCACGGGAAGGGACCGAGAGGCTTGGAGGAAAGGAGGGGAGACTCACTCGG 180
consensus_1378#1 ---------------------------------------------CGCCGCAACCCCCGG 15
* * * * ***
consensus_1378#0 CATGGATTTGTACGGCGCGGCGGCGGGCGGGGGACCGGTGGCGAG-GCGACCGTGGAGCA 239
consensus_1378#1 CGAGGACCGGCACC------CGGCGTACCCTGGTCCGAAGACGAGCACAGTTGTTTCTCG 69
* *** * ** ***** * ** *** * **** * ** *
consensus_1378#0 AGGTGGAGGACAAGGTGTTCGAGAGCGCGCTGGTGCTGTGCCCGGAGGACGTCCCCGACC 299
consensus_1378#1 AGGGGTTGGACA-GGTACGGGCGGGGAGACTGGAGGAACATCTCGCGGTTCTCGGTGA-- 126
*** * ***** *** * * * **** * * * ** ** **
consensus_1378#0 GGTGGGCGCTCGTCG-CGGCGCAGCTCCCAGGGCGCACGCCGCAGGAGGCCTTGGAGCAC 358
consensus_1378#1 GGACCGCGGACGCCGACAGCAGGGTGGCAGACGCCAACAGCGCAAGAAGTACTTGCATGC 186
** *** ** ** * ** * * ** ** **** ** * * * *
consensus_1378#0 TACCAGGTGCTCGTCGCC-GACATCGATCTCATCATGCGCG--GCGAGGAGCGGCGCCGC 415
consensus_1378#1 CCGCGCAAGCCAAACGCCCGGCAGCCACAGCAGACTGCACATAGCGCAAAGAGCATCCAT 246
* ** **** * ** * * ** *** * *** ** * **
consensus_1378#0 GGCGTACCCTGGTCCGAAGACGAGCACAGGTTGTTTCTCGAGGGGTTGGACAGGTACGGG 475
consensus_1378#1 GACATCCACCAACCCCCT--TGAAC-CAGGCTGTC-------GGGCCGGAC-----CGGG 291
* * * * * ** ** * **** *** *** **** ****
consensus_1378#0 CGGGGAGACTGGAGGAACATCTCGCGGTTCTCGGTGAGGACGCGGACGCCGACGCAGGTG 535
consensus_1378#1 CCGAACCACCCCAACCCCCCCCCTGTGTGTCCTGTTG---CCCAAAACCTTGCCTTTTTG 348
* * ** * * * * ** * ** * * * * * **
consensus_1378#0 GCGAGCCACGCGCAGAAGTACTTCATCCGGCAGGCCAACGCCGGCGCCCGCGACTCCAAG 595
consensus_1378#1 GGAATTT---TATAAAGGT------TGGAAAAAACCAAAGCCAAAGGGGG-GGTTAAGGC 398
* * * * ** * * **** *** * * * *
consensus_1378#0 CGCAAGAGCATCCATGACATCACCACCCCTTGACCAGCGTCGGCGACGGCGACCCACCCC 655
consensus_1378#1 CGGAATTGGAACCGGTTGGTTAAC-CAATTTTAATAATGCCCTTAAC--CACCCCACCCA 455
** ** * * ** * * * * ** * * * * ** * *******
consensus_1378#0 CTTTCTTTGCAACTCTTTGGATTAAG-TGAAACAAGCAAGGGGTAGGCGATGACGTGTA- 713
consensus_1378#1 AACCAATTAAGGGCCATAAGTTTAAGGTTAACCTTGTGCCAAAAAACCCGTTTTGTTCCA 515
** * * * ***** * ** * * * * * **
consensus_1378#0 -CATTATATCCTACACCACAACATAGGCAAGTAGTACTGTCAAACCGTTTGTCACTTGGG 772
consensus_1378#1 CCTTTGGGGCCTTCCTTCCTGGAATCCCAATTAAACCCGTTGGAAC---CGGCCCTTAA- 571
* ** *** * * * *** ** * ** * * * * ***
consensus_1378#0 GCTCTCTGATCC--ATAACCGTGGACGGCCTACTTGCCGGAAACAGAGGCTGTTGAGAGC 830
consensus_1378#1 --CCTTTGCCCCGGAAAACCAAGGAAGGCCT---TGTTTGAAG--GAAGCCTTCCC--GC 622
** ** ** * **** *** ***** ** *** ** ** * **
consensus_1378#0 TCCGGTCGGCACACGGTTTGGG---CTTTAGGTTTTTC--AGCATTAATTAGGA-TTAGC 884
consensus_1378#1 TCCGGCCAACCACCGGTTTTTGGCCTTTTAAGTTTTTCCAACCATTAATTAAGAATTAAC 682
***** * * ****** * **** ******* * ********* ** *** *
consensus_1378#0 TAAGT---CAGGGACT-AATGGGGTTTGA--CGTGGC-AACGT--CGTGTCTAGGTTTGG 935
consensus_1378#1 TTAATTCCCAAGAACTTAATGGGGTTTTAACCGTGGCCAACCTTCCGTTCTTAAGTTTTG 742
* * * ** * *** ********** * ****** *** * *** ** **** *
consensus_1378#0 TTGATGCAGA--CGAAGATGTCACTGTTAATATGGGTTTTGTGCTTTTGTTTTG--ATGA 991
consensus_1378#1 TGAATCCAAGGCCGAAGAAGCCCCGGTTAATATGGTTTTTGTGCCTTTGTTTTGGAAGGA 802
* ** ** ****** * * * ********** ******** ********* * **
consensus_1378#0 ATGATGC-TGTC-GAAATCATT-------------- 1011
consensus_1378#1 ATGAAGCCTGTCCGAAACCATTTAACCATAGCCAAA 838
**** ** **** **** ****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||