These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1378#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1011 fasta sequence [CCAAGCCCAACAACACACGGCGCCGCCCACCCATCCACACACCCACCGGCACACGCAACGCCATCATCGTCGCTCGTAGCAGCAGTAGCGTACCACACTTCGCACCGCGATCGTCCGTGTTTGTGTCGTCCACGGGAAGGGACCGAGAGGCTTGGAGGAAAGGAGGGGAGACTCACTCGGCATGGATTTGTACGGCGCGGCGGCGGGCGGGGGACCGGTGGCGAGGCGACCGTGGAGCAAGGTGGAGGACAAGGTGTTCGAGAGCGCGCTGGTGCTGTGCCCGGAGGACGTCCCCGACCGGTGGGCGCTCGTCGCGGCGCAGCTCCCAGGGCGCACGCCGCAGGAGGCCTTGGAGCACTACCAGGTGCTCGTCGCCGACATCGATCTCATCATGCGCGGCGAGGAGCGGCGCCGCGGCGTACCCTGGTCCGAAGACGAGCACAGGTTGTTTCTCGAGGGGTTGGACAGGTACGGGCGGGGAGACTGGAGGAACATCTCGCGGTTCTCGGTGAGGACGCGGACGCCGACGCAGGTGGCGAGCCACGCGCAGAAGTACTTCATCCGGCAGGCCAACGCCGGCGCCCGCGACTCCAAGCGCAAGAGCATCCATGACATCACCACCCCTTGACCAGCGTCGGCGACGGCGACCCACCCCCTTTCTTTGCAACTCTTTGGATTAAGTGAAACAAGCAAGGGGTAGGCGATGACGTGTACATTATATCCTACACCACAACATAGGCAAGTAGTACTGTCAAACCGTTTGTCACTTGGGGCTCTCTGATCCATAACCGTGGACGGCCTACTTGCCGGAAACAGAGGCTGTTGAGAGCTCCGGTCGGCACACGGTTTGGGCTTTAGGTTTTTCAGCATTAATTAGGATTAGCTAAGTCAGGGACTAATGGGGTTTGACGTGGCAACGTCGTGTCTAGGTTTGGTTGATGCAGACGAAGATGTCACTGTTAATATGGGTTTTGTGCTTTTGTTTTGATGAATGATGCTGTCGAAATCATT] [+] EMBL AK111571 [CCAAGCCCAACAACACACGGCGCCGCCCACCCATCCACACACCCACCGGCACACGCAACGCCATCATCGTCGCTCGTAGCAGCAGTAGCGTACCACACTTCGCACCGCGATCGTCCGTGTTTGTGTCGTCCACGGGAAGGGACCGAGAGGCTTGGAGGAAAGGAGGGGAGACTCACTCGGCATGGATTTGTACGGCGCGGCGGCGGGCGGGGGACCGGTGGCGAGGCGACCGTGGAGCAAGGTGGAGGACAAGGTGTTCGAGAGCGCGCTGGTGCTGTGCCCGGAGGACGTCCCCGACCGGTGGGCGCTCGTCGCGGCGCAGCTCCCAGGGCGCACGCCGCAGGAGGCCTTGGAGCACTACCAGGTGCTCGTCGCCGACATCGATCTCATCATGCGCGGCGAGGAGCGGCGCCGCGGCGTACCCTGGTCCGAAGACGAGCACAGGTTGTTTCTCGAGGGGTTGGACAGGTACGGGCGGGGAGACTGGAGGAACATCTCGCGGTTCTCGGTGAGGACGCGGACGCCGACGCAGGTGGCGAGCCACGCGCAGAAGTACTTCATCCGGCAGGCCAACGCCGGCGCCCGCGACTCCAAGCGCAAGAGCATCCATGACATCACCACCCCTTGACCAGCGTCGGCGACGGCGACCCACCCCCTTTCTTTGCAACTCTTTGGATTAAGTGAAACAAGCAAGGGGTAGGCGATGACGTGTACATTATATCCTACACCACAACATAGGCAAGTAGTACTGTCAAACCGTTTGTCACTTGGGGCTCTCTGATCCATAACCGTGGACGGCCTACTTGCCGGAAACAGAGGCTGTTGAGAGCTCCGGTCGGCACACGGTTTGGGCTTTAGGTTTTTCAGCATTAATTAGGATTAGCTAAGTCAGGGACTAATGGGGTTTGACGTGGCAACGTCGTGTCTAGGTTTGGTTGATGCAGACGAAGATGTCACTGTTAATATGGGTTTTGTGCTTTTGTTTTGATGAATGATGCTGTCGAAATCATT] consensusID : consensus_1378#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 838 fasta sequence [CGCCGCAACCCCCGGCGAGGACCGGCACCCGGCGTACCCTGGTCCGAAGACGAGCACAGTTGTTTCTCGAGGGGTTGGACAGGTACGGGCGGGGAGACTGGAGGAACATCTCGCGGTTCTCGGTGAGGACCGCGGACGCCGACAGCAGGGTGGCAGACGCCAACAGCGCAAGAAGTACTTGCATGCCCGCGCAAGCCAAACGCCCGGCAGCCACAGCAGACTGCACATAGCGCAAAGAGCATCCATGACATCCACCAACCCCCTTGAACCAGGCTGTCGGGCCGGACCGGGCCGAACCACCCCAACCCCCCCCCTGTGTGTCCTGTTGCCCAAAACCTTGCCTTTTTGGGAATTTTATAAAGGTTGGAAAAAACCAAAGCCAAAGGGGGGGTTAAGGCCGGAATTGGAACCGGTTGGTTAACCAATTTTAATAATGCCCTTAACCACCCCACCCAAACCAATTAAGGGCCATAAGTTTAAGGTTAACCTTGTGCCAAAAAACCCGTTTTGTTCCACCTTTGGGGCCTTCCTTCCTGGAATCCCAATTAAACCCGTTGGAACCGGCCCTTAACCTTTGCCCCGGAAAACCAAGGAAGGCCTTGTTTGAAGGAAGCCTTCCCGCTCCGGCCAACCACCGGTTTTTGGCCTTTTAAGTTTTTCCAACCATTAATTAAGAATTAACTTAATTCCCAAGAACTTAATGGGGTTTTAACCGTGGCCAACCTTCCGTTCTTAAGTTTTGTGAATCCAAGGCCGAAGAAGCCCCGGTTAATATGGTTTTTGTGCCTTTGTTTTGGAAGGAATGAAGCCTGTCCGAAACCATTTAACCATAGCCAAA] [+] EMBL BI800140 [CGCCGCAACCCCCGGCGAGGACCGGCACCCGGCGTACCCTGGTCCGAAGACGAGCACAGTTGTTTCTCGAGGGGTTGGACAGGTACGGGCGGGGAGACTGGAGGAACATCTCGCGGTTCTCGGTGAGGACCGCGGACGCCGACAGCAGGGTGGCAGACGCCAACAGCGCAAGAAGTACTTGCATGCCCGCGCAAGCCAAACGCCCGGCAGCCACAGCAGACTGCACATAGCGCAAAGAGCATCCATGACATCCACCAACCCCCTTGAACCAGGCTGTCGGGCCGGACCGGGCCGAACCACCCCAACCCCCCCCCTGTGTGTCCTGTTGCCCAAAACCTTGCCTTTTTGGGAATTTTATAAAGGTTGGAAAAAACCAAAGCCAAAGGGGGGGTTAAGGCCGGAATTGGAACCGGTTGGTTAACCAATTTTAATAATGCCCTTAACCACCCCACCCAAACCAATTAAGGGCCATAAGTTTAAGGTTAACCTTGTGCCAAAAAACCCGTTTTGTTCCACCTTTGGGGCCTTCCTTCCTGGAATCCCAATTAAACCCGTTGGAACCGGCCCTTAACCTTTGCCCCGGAAAACCAAGGAAGGCCTTGTTTGAAGGAAGCCTTCCCGCTCCGGCCAACCACCGGTTTTTGGCCTTTTAAGTTTTTCCAACCATTAATTAAGAATTAACTTAATTCCCAAGAACTTAATGGGGTTTTAACCGTGGCCAACCTTCCGTTCTTAAGTTTTGTGAATCCAAGGCCGAAGAAGCCCCGGTTAATATGGTTTTTGTGCCTTTGTTTTGGAAGGAATGAAGCCTGTCCGAAACCATTTAACCATAGCCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1378#0 CCAAGCCCAACAACACACGGCGCCGCCCACCCATCCACACACCCACCGGCACACGCAACG 60 consensus_1378#1 ------------------------------------------------------------ consensus_1378#0 CCATCATCGTCGCTCGTAGCAGCAGTAGCGTACCACACTTCGCACCGCGATCGTCCGTGT 120 consensus_1378#1 ------------------------------------------------------------ consensus_1378#0 TTGTGTCGTCCACGGGAAGGGACCGAGAGGCTTGGAGGAAAGGAGGGGAGACTCACTCGG 180 consensus_1378#1 ---------------------------------------------CGCCGCAACCCCCGG 15 * * * * *** consensus_1378#0 CATGGATTTGTACGGCGCGGCGGCGGGCGGGGGACCGGTGGCGAG-GCGACCGTGGAGCA 239 consensus_1378#1 CGAGGACCGGCACC------CGGCGTACCCTGGTCCGAAGACGAGCACAGTTGTTTCTCG 69 * *** * ** ***** * ** *** * **** * ** * consensus_1378#0 AGGTGGAGGACAAGGTGTTCGAGAGCGCGCTGGTGCTGTGCCCGGAGGACGTCCCCGACC 299 consensus_1378#1 AGGGGTTGGACA-GGTACGGGCGGGGAGACTGGAGGAACATCTCGCGGTTCTCGGTGA-- 126 *** * ***** *** * * * **** * * * ** ** ** consensus_1378#0 GGTGGGCGCTCGTCG-CGGCGCAGCTCCCAGGGCGCACGCCGCAGGAGGCCTTGGAGCAC 358 consensus_1378#1 GGACCGCGGACGCCGACAGCAGGGTGGCAGACGCCAACAGCGCAAGAAGTACTTGCATGC 186 ** *** ** ** * ** * * ** ** **** ** * * * * consensus_1378#0 TACCAGGTGCTCGTCGCC-GACATCGATCTCATCATGCGCG--GCGAGGAGCGGCGCCGC 415 consensus_1378#1 CCGCGCAAGCCAAACGCCCGGCAGCCACAGCAGACTGCACATAGCGCAAAGAGCATCCAT 246 * ** **** * ** * * ** *** * *** ** * ** consensus_1378#0 GGCGTACCCTGGTCCGAAGACGAGCACAGGTTGTTTCTCGAGGGGTTGGACAGGTACGGG 475 consensus_1378#1 GACATCCACCAACCCCCT--TGAAC-CAGGCTGTC-------GGGCCGGAC-----CGGG 291 * * * * * ** ** * **** *** *** **** **** consensus_1378#0 CGGGGAGACTGGAGGAACATCTCGCGGTTCTCGGTGAGGACGCGGACGCCGACGCAGGTG 535 consensus_1378#1 CCGAACCACCCCAACCCCCCCCCTGTGTGTCCTGTTG---CCCAAAACCTTGCCTTTTTG 348 * * ** * * * * ** * ** * * * * * ** consensus_1378#0 GCGAGCCACGCGCAGAAGTACTTCATCCGGCAGGCCAACGCCGGCGCCCGCGACTCCAAG 595 consensus_1378#1 GGAATTT---TATAAAGGT------TGGAAAAAACCAAAGCCAAAGGGGG-GGTTAAGGC 398 * * * * ** * * **** *** * * * * consensus_1378#0 CGCAAGAGCATCCATGACATCACCACCCCTTGACCAGCGTCGGCGACGGCGACCCACCCC 655 consensus_1378#1 CGGAATTGGAACCGGTTGGTTAAC-CAATTTTAATAATGCCCTTAAC--CACCCCACCCA 455 ** ** * * ** * * * * ** * * * * ** * ******* consensus_1378#0 CTTTCTTTGCAACTCTTTGGATTAAG-TGAAACAAGCAAGGGGTAGGCGATGACGTGTA- 713 consensus_1378#1 AACCAATTAAGGGCCATAAGTTTAAGGTTAACCTTGTGCCAAAAAACCCGTTTTGTTCCA 515 ** * * * ***** * ** * * * * * ** consensus_1378#0 -CATTATATCCTACACCACAACATAGGCAAGTAGTACTGTCAAACCGTTTGTCACTTGGG 772 consensus_1378#1 CCTTTGGGGCCTTCCTTCCTGGAATCCCAATTAAACCCGTTGGAAC---CGGCCCTTAA- 571 * ** *** * * * *** ** * ** * * * * *** consensus_1378#0 GCTCTCTGATCC--ATAACCGTGGACGGCCTACTTGCCGGAAACAGAGGCTGTTGAGAGC 830 consensus_1378#1 --CCTTTGCCCCGGAAAACCAAGGAAGGCCT---TGTTTGAAG--GAAGCCTTCCC--GC 622 ** ** ** * **** *** ***** ** *** ** ** * ** consensus_1378#0 TCCGGTCGGCACACGGTTTGGG---CTTTAGGTTTTTC--AGCATTAATTAGGA-TTAGC 884 consensus_1378#1 TCCGGCCAACCACCGGTTTTTGGCCTTTTAAGTTTTTCCAACCATTAATTAAGAATTAAC 682 ***** * * ****** * **** ******* * ********* ** *** * consensus_1378#0 TAAGT---CAGGGACT-AATGGGGTTTGA--CGTGGC-AACGT--CGTGTCTAGGTTTGG 935 consensus_1378#1 TTAATTCCCAAGAACTTAATGGGGTTTTAACCGTGGCCAACCTTCCGTTCTTAAGTTTTG 742 * * * ** * *** ********** * ****** *** * *** ** **** * consensus_1378#0 TTGATGCAGA--CGAAGATGTCACTGTTAATATGGGTTTTGTGCTTTTGTTTTG--ATGA 991 consensus_1378#1 TGAATCCAAGGCCGAAGAAGCCCCGGTTAATATGGTTTTTGTGCCTTTGTTTTGGAAGGA 802 * ** ** ****** * * * ********** ******** ********* * ** consensus_1378#0 ATGATGC-TGTC-GAAATCATT-------------- 1011 consensus_1378#1 ATGAAGCCTGTCCGAAACCATTTAACCATAGCCAAA 838 **** ** **** **** **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||