|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13785#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 981 fasta sequence
[TGCCGGTCTCCTCCGAACCCTAGCCTGCTTCTCCTCCTCCTCCCCGCCGCCGCCGCCGCGAGCACAGACGACGCAGCCATGTCCGGGAGGAAGAAGACGCGAGAGCCCAAGGAGGAGAACGTGACGCTCGGCCCCACGGTCCGCGAGGGCGAGTACGTCTTCGGCGTCGCGCACATCTTCGCGTCGTTCAACGACACCTTCATCCACGTGACGGATCTGTCCGGCAGGGAGACGCTCGTCCGCATCACCGGTGGCATGAAGGTGAAAGCTGACCGTGATGAGTCATCCCCTTATGCTGCCATGCTTGCATCCCAGGATGTTGCACAGAGATGCAAGGAGCTTGGAATTACTGCTCTGCACATTAAGCTCC-GTGCTACTGGT-GGAAACAAGACAAAAACTCCTGGT-CCTGGTGCTCAATCTGCGCTTAGAGCTCTTGCACGTTCTGGCATGAAGATTGGACGCATTGA-GGATGTTACTCCAGTCCCAACTGACAGTAC-CCG-CAGAAAGGGTGGCAGAAGAGGAAGGAGGCTGTAATTCCGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAAAGCCGATTATCTAAATTTTGGTTGCTGTTA--ACAA--AA-----A--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTGCCCTTTCCTTAGAAGGGGGGAATTTTTTTAAACCCGGGGGGATTTCCCCTTTAGGGGGGGGTAATTTTGGACTGGGGGAAAAAAGGGGCAAAACTTTTTCCGGGGGAAAATTGTTTTCCCTTCAAAATTCCCCCAAAAATTAAAACCGGAAACATAAAGGGGAAAC]
[+] EMBL AK121192 [TGCCGGTCTCCTCCGAACCCTAGCCTGCTTCTCCTCCTCCTCCCCGCCGCCGCCGCCGCGAGCACAGACGACGCAGCCATGTCCGGGAGGAAGAAGACGCGAGAGCCCAAGGAGGAGAACGTGACGCTCGGCCCCACGGTCCGCGAGGGCGAGTACGTCTTCGGCGTCGCGCACATCTTCGCGTCGTTCAACGACACCTTCATCCACGTGACGGATCTGTCCGGCAGGGAGACGCTCGTCCGCATCACCGGTGGCATGAAGGTGAAAGCTGACCGTGATGAGTCATCCCCTTATGCTGCCATGCTTGCATCCCAGGATGTTGCACAGAGATGCAAGGAGCTTGGAATTACTGCTCTGCACATTAAGCTCC GTGCTACTGGT GGAAACAAGACAAAAACTCCTGGT CCTGGTGCTCAATCTGCGCTTAGAGCTCTTGCACGTTCTGGCATGAAGATTGGACGCATTGA GGATGTTACTCCAGTCCCAACTGACAGTAC CCG CAGAAAGGGTGGCAGAAGAGGAAGGAGGCTGTAATTCCGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAAAG ]
[+] EMBL CF328884 [ CCGGTCTCCTCCGAACCCTAGCCTGCTTCTCCTCCTCCTCCCCGCCGCCGCCGCCGCGAGCACAGACGACGCAGCCATGTCCGGGAGGAAGAAGACGCGAGAGCCCAAGGAGGAGAACGTGACGCTCGGCCCCACGGTCCGCGAGGGCGAGTACGTCTTCGGCGTCGCGCACATCTTCGCGTCGTTCAACGACACCTTCATCCACGTGACGGATCTGTCCGGCAGGGAGACGCTCGTCCGCATCACCGGTGGCATGAAGGTGAAAGCTGACCGTGATGAGTCATCCCCTTATGCTGCCATGCTTGCATCCCAGGATGTTGCACAGAGATGCAAGGAGCTTGGAATTACTGCTCTGCACATTAAGCTCC GTGCTACTGGT GGAAACAAGACAAAAACTCCTGGT CCTGGTGCTCAATCTGCGCTTAGAGCTCTTGCACGTTCTGGCATGAAGATTGGACGCATTGA GGATGTTACTCCAGTCCCAACTGACAGTAC CCG CAGAAAGGGTGGCAGAAGAGGAAGGAGGCTGTAATTCCGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGC ]
[+] EMBL AU063345 [ GGCGTCGCGCACATCTTCGCGTCGTTCAACGACACCTTCATCCACGTGACGGATCTGTCCGGCAGGGAGACGCTCGTCCGCATCACCGGTGGCATGAAGGTGAAAGCTGACCGTGATGAGTCATCCCCTTATGCTGCCATGCTTGCATCCCAGGATGTTGCACAGAGATGCAAGGAGCTTGGAATTACTGCTCTGCACATTAAGCTCC GTGCTACTGGT GGAAACAAGACAAAAACTCCTGGT CCTGGTGCTCAATCTGCGCTTAGAGCTCTTGCACGTTCTNGCATGAAGATTNGACGCATTGAGGGATGTTACTCCAGTCCCAACTGACAGTAC CCG CAGAAAGGGTGGCAGAGGAGGAAGGAGGCTTTAATTCCGTGTAGTGCCTNTTATGGGGGGGAAGCAAAGTTATCTATCCTTGTCCTTGNAACTTGTTCTGNACTCTATTA ]
[+] EMBL AU063477 [ GGCGTCGCGCACATCTTCGCGTCGTTCAACGACACCTTCATCCACGTGACGGATCTGTCCGGCAGGGAGACGCTCGTCCGCATCACCGGTGGCATGAAGGTGAAAGCTGACCGTGATGAGTCATCCCCTTATGCTGCCATGCTTGCATCCCAGGATGTTGCACAGAGATGCAAGGAGCTTGGAATTACTGCTCTGCACATTAAGCTCC GTGCTACTGGTGGGAAACAAGACAAAAACTCCTGGT CCTGGTGCTCAATCTGCGCTTAGAGCTCTTGCACGTTCTGGCATGAAGATTGGNCGCATTGAGGGATGTTACTCC ]
[+] EMBL OSR27291A [ TGGCATGAAGGTGAAANCTGACCGTNATGAGTCATCCCCTTATNCTGCCATNCTTGCATCCCAGGATNTTGCACAGAGATGCAAGGAGCTTGGAATTACTGCTCTGCACATTAAGCTCC GTGNTACTGGT GGAAACAAGNCAAAAAC ]
[+] EMBL AU100988 [ CATCCCCTTATGCTGCCATGCTTGCATCCCAGGATGTTGCACAGAGATGCAAGNAGCTTGGAATTACTGCTCTGCACATTAAGCTCCGGTGCTACTGGT GAACCAAGACAAAANCTCCTGGT CCTGGTGCTCAATCTGCGCTTAGAGCTCTTGCACGTTCTGGCATGAAGATTGGACGCATTGA GGATGTTACTCCAGTCCCAACTGACAGTAC CCG CAGAAAGGGTGGCAGAAGAGGAAGGAGGCTGTAATTCCGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAAAGCCGATTATCTAAATTTTGGTTGCTGTTA TCAC AA A AAAAA ]
[+] EMBL AU092924 [ GGTCCCTGGTGCTCAATCTGCGCTTAGAGCTCTTGNACGNTCTGGCATGAAGATTGGACGCATTGA GGATGTTACTCCAGTCCCAACTGACAGTAC CCGCCAGAAAGGGTGGCAGANGNGGAAGGAGGCTGTAATTCCGTGTAGTGCCTGTTATGGGGGGAANGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAAAGCCGATTATCTAAATTTTGGTTGCTGTTA TCAC AA A ]
[-] EMBL CF328885 [ GGCATGAAGATTGGACGCATTGA GGATGTTACTCCAGTCCCAACTGACAGTACNCCG CAGAAAGGGTGGCAGAAGAGGAAGGAGGCTGTAATTCCGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAAAGCCGATTATCTAAATTTTGGTTGCTGTTA AAAA AA A AA ]
[+] EMBL AF522012 [ GGCAGAAGAGGAAGGAGGCTGTAATTCCGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAAAGCCGATTATCTAAATTTTGGTTGCTGTTA AAAA ]
[+] EMBL CF320988 [ CGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAAAGCCGATTATCTAAATTTTGGTTGCTGTTATCACAACTAATGTTTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL CF321782 [ CGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAAAGCCGATTATCTAAATTTTGGTTGCTGTTA AAAA AA A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTGTTTGCCCTTTCCTTAGAAGGGGGGAATTTTTTTAAACCCGGGGGGATTTCCCCTTTAGGGGGGGGTAATTTTGGACTGGGGGAAAAAAGGGGCAAAACTTTTTCCGGGGGAAAATTGTTTTCCCTTCAAAATTCCCCCAAAAATTAAAACCGGAAACATAAAGGGGAAAC]
consensusID : consensus_13785#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence
[TAGGATTTGTTGGGGTTTCATCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTTCCCTTTCCTTACAAAAGGGCAATTTCCCGCCCTTTAAATTAATTCCCCCTTATAGGAATTCTTTTAAAATTCAATTGCCCGTCTTTTAAAAACTTCGAAATTGGAAAACCCTTGCCTTACCCAAATTAAATCCCTTTGAAAAAAATCCCCTTTTCCCCACTTGGCTAAAAACAAAAAAGCCCCCCCCCAATCCCCTTTCCAAAAATTTGCCCACCTTATACTTCCGGAATTTAAAGGTTAACCCCTATAAA]
[+] EMBL CF317332 [TAGGATTTGTTGGGGTTTCATCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTTCCCTTTCCTTACAAAAGGGCAATTTCCCGCCCTTTAAATTAATTCCCCCTTATAGGAATTCTTTTAAAATTCAATTGCCCGTCTTTTAAAAACTTCGAAATTGGAAAACCCTTGCCTTACCCAAATTAAATCCCTTTGAAAAAAATCCCCTTTTCCCCACTTGGCTAAAAACAAAAAAGCCCCCCCCCAATCCCCTTTCCAAAAATTTGCCCACCTTATACTTCCGGAATTTAAAGGTTAACCCCTATAAA]
consensusID : consensus_13785#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence
[CGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAGAGCCGATTATCTAAATTTTGGTTGCTGTTATCACANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF319924 [CGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAGAGCCGATTATCTAAATTTTGGTTGCTGTTATCACANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13785#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 283 fasta sequence
[CACTGCCATGGACTGAAGGAGTCTGTAATTCCGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAATTTCTATTATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF322060 [CACTGCCATGGACTGAAGGAGTCTGTAATTCCGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAATTTCTATTATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13785#0 TGCCGGTCTCCTCCGAACCCTAGCCTGCTTCTCCTCCTCCTCCCCGCCGCCGCCGCCGCG 60
consensus_13785#3 ------------------------------------------------------------
consensus_13785#2 ------------------------------------------------------------
consensus_13785#1 ------------------------------------------------------------
consensus_13785#0 AGCACAGACGACGCAGCCATGTCCGGGAGGAAGAAGACGCGAGAGCCCAAGGAGGAGAAC 120
consensus_13785#3 ------------------------------------------------------------
consensus_13785#2 ------------------------------------------------------------
consensus_13785#1 ------------------------------------------------------------
consensus_13785#0 GTGACGCTCGGCCCCACGGTCCGCGAGGGCGAGTACGTCTTCGGCGTCGCGCACATCTTC 180
consensus_13785#3 ------------------------------------------------------------
consensus_13785#2 ------------------------------------------------------------
consensus_13785#1 ------------------------------------------------------------
consensus_13785#0 GCGTCGTTCAACGACACCTTCATCCACGTGACGGATCTGTCCGGCAGGGAGACGCTCGTC 240
consensus_13785#3 ------------------------------------------------------------
consensus_13785#2 ------------------------------------------------------------
consensus_13785#1 ------------------------------------------------------------
consensus_13785#0 CGCATCACCGGTGGCATGAAGGTGAAAGCTGACCGTGATGAGTCATCCCCTTATGCTGCC 300
consensus_13785#3 ------------------------------------------------------------
consensus_13785#2 ------------------------------------------------------------
consensus_13785#1 ------------------------------------------------------------
consensus_13785#0 ATGCTTGCATCCCAGGATGTTGCACAGAGATGCAAGGAGCTTGGAATTACTGCTCTGCAC 360
consensus_13785#3 ------------------------------------------------------------
consensus_13785#2 ------------------------------------------------------------
consensus_13785#1 ------------------------------------------------------------
consensus_13785#0 ATTAAGCTCCGTGCTACTGGTGGAAACAAGACAAAAACTCCTGGTCCTGGTGCTCAATCT 420
consensus_13785#3 ------------------------------------------------------------
consensus_13785#2 ------------------------------------------------------------
consensus_13785#1 ------------------------------------------------------------
consensus_13785#0 GCGCTTAGAGCTCTTGCACGTTCTGGCATGAAGATTGGACGCATTGAGGATGTTACTCCA 480
consensus_13785#3 ------------------------------------------------------------
consensus_13785#2 ------------------------------------------------------------
consensus_13785#1 --------------------------------------TAGGATTTGTTGGGGTTTCATC 22
consensus_13785#0 GTCCCAACTGACAGTACCCGCAGAAAGGGTGGCAGAAGAGGAAGGAGGCTGTAATTCCGT 540
consensus_13785#3 --------------------------CACTGCCATGGACTGAAGGAGTCTGTAATTCCGT 34
consensus_13785#2 ---------------------------------------------------------CGT 3
consensus_13785#1 ATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 82
consensus_13785#0 GTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTG----T 596
consensus_13785#3 GTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTG----T 90
consensus_13785#2 GTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTG----T 59
consensus_13785#1 AAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTTCCCTTTCCTTACAAAAGGGCAAT 142
* * *** ** ** * * *** * ***** *** * *
consensus_13785#0 TCTGTACTCTATTA-TGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGC-----TA 650
consensus_13785#3 TCTGTACTCTATTA-TGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGC-----TA 144
consensus_13785#2 TCTGTACTCTATTA-TGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGC-----TA 113
consensus_13785#1 TTCCCGCCCTTTAAATTAATTCCCCCTTATAGGAATTCTTTTAAAATTCAATTGCCCGTC 202
* * ** * * * * * * * * * ** **** ** * *
consensus_13785#0 TGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTAT--AAAGCCGATTATCTAAATTTT 708
consensus_13785#3 TGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTAT--AATTTCTATTATCTAAA---- 198
consensus_13785#2 TGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTAT--AGAGCCGATTATCTAAATTTT 171
consensus_13785#1 TTTTAAAAACTTCGAAATTGGAAAACCCTTGCCTTACCCAAATTAAATCCCTTTGAAAAA 262
* *** *** ** *** *** ** ** * ** * *
consensus_13785#0 GGTTGCTGTTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 768
consensus_13785#3 ----------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 248
consensus_13785#2 GGTTGCTGTTATCACANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAA 231
consensus_13785#1 AATCCCCTTTTCCCCACTTGGCTAAAAACAAAAAAGCCCCCCCCCAATCCCCTTTCCAAA 322
* ***** ****** ** **
consensus_13785#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTGCCCTTTCCTTAGA 828
consensus_13785#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------- 283
consensus_13785#2 AAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 291
consensus_13785#1 AATTTGCCCACCTTATACTTCCGGAATTTAAAGGTTAACCCCTATAAA------------ 370
** * * ** ***
consensus_13785#0 AGGGGGGAATTTTTTTAAACCCGGGGGGATTTCCCCTTTAGGGGGGGGTAATTTTGGACT 888
consensus_13785#3 ------------------------------------------------------------
consensus_13785#2 AAAAAAAAAAAAAAAAAAA----------------------------------------- 310
consensus_13785#1 ------------------------------------------------------------
consensus_13785#0 GGGGGAAAAAAGGGGCAAAACTTTTTCCGGGGGAAAATTGTTTTCCCTTCAAAATTCCCC 948
consensus_13785#3 ------------------------------------------------------------
consensus_13785#2 ------------------------------------------------------------
consensus_13785#1 ------------------------------------------------------------
consensus_13785#0 CAAAAATTAAAACCGGAAACATAAAGGGGAAAC 981
consensus_13785#3 ---------------------------------
consensus_13785#2 ---------------------------------
consensus_13785#1 ---------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||