These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13785#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 981 fasta sequence [TGCCGGTCTCCTCCGAACCCTAGCCTGCTTCTCCTCCTCCTCCCCGCCGCCGCCGCCGCGAGCACAGACGACGCAGCCATGTCCGGGAGGAAGAAGACGCGAGAGCCCAAGGAGGAGAACGTGACGCTCGGCCCCACGGTCCGCGAGGGCGAGTACGTCTTCGGCGTCGCGCACATCTTCGCGTCGTTCAACGACACCTTCATCCACGTGACGGATCTGTCCGGCAGGGAGACGCTCGTCCGCATCACCGGTGGCATGAAGGTGAAAGCTGACCGTGATGAGTCATCCCCTTATGCTGCCATGCTTGCATCCCAGGATGTTGCACAGAGATGCAAGGAGCTTGGAATTACTGCTCTGCACATTAAGCTCC-GTGCTACTGGT-GGAAACAAGACAAAAACTCCTGGT-CCTGGTGCTCAATCTGCGCTTAGAGCTCTTGCACGTTCTGGCATGAAGATTGGACGCATTGA-GGATGTTACTCCAGTCCCAACTGACAGTAC-CCG-CAGAAAGGGTGGCAGAAGAGGAAGGAGGCTGTAATTCCGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAAAGCCGATTATCTAAATTTTGGTTGCTGTTA--ACAA--AA-----A--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTGCCCTTTCCTTAGAAGGGGGGAATTTTTTTAAACCCGGGGGGATTTCCCCTTTAGGGGGGGGTAATTTTGGACTGGGGGAAAAAAGGGGCAAAACTTTTTCCGGGGGAAAATTGTTTTCCCTTCAAAATTCCCCCAAAAATTAAAACCGGAAACATAAAGGGGAAAC] [+] EMBL AK121192 [TGCCGGTCTCCTCCGAACCCTAGCCTGCTTCTCCTCCTCCTCCCCGCCGCCGCCGCCGCGAGCACAGACGACGCAGCCATGTCCGGGAGGAAGAAGACGCGAGAGCCCAAGGAGGAGAACGTGACGCTCGGCCCCACGGTCCGCGAGGGCGAGTACGTCTTCGGCGTCGCGCACATCTTCGCGTCGTTCAACGACACCTTCATCCACGTGACGGATCTGTCCGGCAGGGAGACGCTCGTCCGCATCACCGGTGGCATGAAGGTGAAAGCTGACCGTGATGAGTCATCCCCTTATGCTGCCATGCTTGCATCCCAGGATGTTGCACAGAGATGCAAGGAGCTTGGAATTACTGCTCTGCACATTAAGCTCC GTGCTACTGGT GGAAACAAGACAAAAACTCCTGGT CCTGGTGCTCAATCTGCGCTTAGAGCTCTTGCACGTTCTGGCATGAAGATTGGACGCATTGA GGATGTTACTCCAGTCCCAACTGACAGTAC CCG CAGAAAGGGTGGCAGAAGAGGAAGGAGGCTGTAATTCCGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAAAG ] [+] EMBL CF328884 [ CCGGTCTCCTCCGAACCCTAGCCTGCTTCTCCTCCTCCTCCCCGCCGCCGCCGCCGCGAGCACAGACGACGCAGCCATGTCCGGGAGGAAGAAGACGCGAGAGCCCAAGGAGGAGAACGTGACGCTCGGCCCCACGGTCCGCGAGGGCGAGTACGTCTTCGGCGTCGCGCACATCTTCGCGTCGTTCAACGACACCTTCATCCACGTGACGGATCTGTCCGGCAGGGAGACGCTCGTCCGCATCACCGGTGGCATGAAGGTGAAAGCTGACCGTGATGAGTCATCCCCTTATGCTGCCATGCTTGCATCCCAGGATGTTGCACAGAGATGCAAGGAGCTTGGAATTACTGCTCTGCACATTAAGCTCC GTGCTACTGGT GGAAACAAGACAAAAACTCCTGGT CCTGGTGCTCAATCTGCGCTTAGAGCTCTTGCACGTTCTGGCATGAAGATTGGACGCATTGA GGATGTTACTCCAGTCCCAACTGACAGTAC CCG CAGAAAGGGTGGCAGAAGAGGAAGGAGGCTGTAATTCCGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGC ] [+] EMBL AU063345 [ GGCGTCGCGCACATCTTCGCGTCGTTCAACGACACCTTCATCCACGTGACGGATCTGTCCGGCAGGGAGACGCTCGTCCGCATCACCGGTGGCATGAAGGTGAAAGCTGACCGTGATGAGTCATCCCCTTATGCTGCCATGCTTGCATCCCAGGATGTTGCACAGAGATGCAAGGAGCTTGGAATTACTGCTCTGCACATTAAGCTCC GTGCTACTGGT GGAAACAAGACAAAAACTCCTGGT CCTGGTGCTCAATCTGCGCTTAGAGCTCTTGCACGTTCTNGCATGAAGATTNGACGCATTGAGGGATGTTACTCCAGTCCCAACTGACAGTAC CCG CAGAAAGGGTGGCAGAGGAGGAAGGAGGCTTTAATTCCGTGTAGTGCCTNTTATGGGGGGGAAGCAAAGTTATCTATCCTTGTCCTTGNAACTTGTTCTGNACTCTATTA ] [+] EMBL AU063477 [ GGCGTCGCGCACATCTTCGCGTCGTTCAACGACACCTTCATCCACGTGACGGATCTGTCCGGCAGGGAGACGCTCGTCCGCATCACCGGTGGCATGAAGGTGAAAGCTGACCGTGATGAGTCATCCCCTTATGCTGCCATGCTTGCATCCCAGGATGTTGCACAGAGATGCAAGGAGCTTGGAATTACTGCTCTGCACATTAAGCTCC GTGCTACTGGTGGGAAACAAGACAAAAACTCCTGGT CCTGGTGCTCAATCTGCGCTTAGAGCTCTTGCACGTTCTGGCATGAAGATTGGNCGCATTGAGGGATGTTACTCC ] [+] EMBL OSR27291A [ TGGCATGAAGGTGAAANCTGACCGTNATGAGTCATCCCCTTATNCTGCCATNCTTGCATCCCAGGATNTTGCACAGAGATGCAAGGAGCTTGGAATTACTGCTCTGCACATTAAGCTCC GTGNTACTGGT GGAAACAAGNCAAAAAC ] [+] EMBL AU100988 [ CATCCCCTTATGCTGCCATGCTTGCATCCCAGGATGTTGCACAGAGATGCAAGNAGCTTGGAATTACTGCTCTGCACATTAAGCTCCGGTGCTACTGGT GAACCAAGACAAAANCTCCTGGT CCTGGTGCTCAATCTGCGCTTAGAGCTCTTGCACGTTCTGGCATGAAGATTGGACGCATTGA GGATGTTACTCCAGTCCCAACTGACAGTAC CCG CAGAAAGGGTGGCAGAAGAGGAAGGAGGCTGTAATTCCGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAAAGCCGATTATCTAAATTTTGGTTGCTGTTA TCAC AA A AAAAA ] [+] EMBL AU092924 [ GGTCCCTGGTGCTCAATCTGCGCTTAGAGCTCTTGNACGNTCTGGCATGAAGATTGGACGCATTGA GGATGTTACTCCAGTCCCAACTGACAGTAC CCGCCAGAAAGGGTGGCAGANGNGGAAGGAGGCTGTAATTCCGTGTAGTGCCTGTTATGGGGGGAANGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAAAGCCGATTATCTAAATTTTGGTTGCTGTTA TCAC AA A ] [-] EMBL CF328885 [ GGCATGAAGATTGGACGCATTGA GGATGTTACTCCAGTCCCAACTGACAGTACNCCG CAGAAAGGGTGGCAGAAGAGGAAGGAGGCTGTAATTCCGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAAAGCCGATTATCTAAATTTTGGTTGCTGTTA AAAA AA A AA ] [+] EMBL AF522012 [ GGCAGAAGAGGAAGGAGGCTGTAATTCCGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAAAGCCGATTATCTAAATTTTGGTTGCTGTTA AAAA ] [+] EMBL CF320988 [ CGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAAAGCCGATTATCTAAATTTTGGTTGCTGTTATCACAACTAATGTTTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL CF321782 [ CGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAAAGCCGATTATCTAAATTTTGGTTGCTGTTA AAAA AA A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTGTTTGCCCTTTCCTTAGAAGGGGGGAATTTTTTTAAACCCGGGGGGATTTCCCCTTTAGGGGGGGGTAATTTTGGACTGGGGGAAAAAAGGGGCAAAACTTTTTCCGGGGGAAAATTGTTTTCCCTTCAAAATTCCCCCAAAAATTAAAACCGGAAACATAAAGGGGAAAC] consensusID : consensus_13785#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence [TAGGATTTGTTGGGGTTTCATCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTTCCCTTTCCTTACAAAAGGGCAATTTCCCGCCCTTTAAATTAATTCCCCCTTATAGGAATTCTTTTAAAATTCAATTGCCCGTCTTTTAAAAACTTCGAAATTGGAAAACCCTTGCCTTACCCAAATTAAATCCCTTTGAAAAAAATCCCCTTTTCCCCACTTGGCTAAAAACAAAAAAGCCCCCCCCCAATCCCCTTTCCAAAAATTTGCCCACCTTATACTTCCGGAATTTAAAGGTTAACCCCTATAAA] [+] EMBL CF317332 [TAGGATTTGTTGGGGTTTCATCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTTCCCTTTCCTTACAAAAGGGCAATTTCCCGCCCTTTAAATTAATTCCCCCTTATAGGAATTCTTTTAAAATTCAATTGCCCGTCTTTTAAAAACTTCGAAATTGGAAAACCCTTGCCTTACCCAAATTAAATCCCTTTGAAAAAAATCCCCTTTTCCCCACTTGGCTAAAAACAAAAAAGCCCCCCCCCAATCCCCTTTCCAAAAATTTGCCCACCTTATACTTCCGGAATTTAAAGGTTAACCCCTATAAA] consensusID : consensus_13785#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence [CGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAGAGCCGATTATCTAAATTTTGGTTGCTGTTATCACANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF319924 [CGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAGAGCCGATTATCTAAATTTTGGTTGCTGTTATCACANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13785#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 283 fasta sequence [CACTGCCATGGACTGAAGGAGTCTGTAATTCCGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAATTTCTATTATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF322060 [CACTGCCATGGACTGAAGGAGTCTGTAATTCCGTGTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTGTTCTGTACTCTATTATGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGCTATGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTATAATTTCTATTATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13785#0 TGCCGGTCTCCTCCGAACCCTAGCCTGCTTCTCCTCCTCCTCCCCGCCGCCGCCGCCGCG 60 consensus_13785#3 ------------------------------------------------------------ consensus_13785#2 ------------------------------------------------------------ consensus_13785#1 ------------------------------------------------------------ consensus_13785#0 AGCACAGACGACGCAGCCATGTCCGGGAGGAAGAAGACGCGAGAGCCCAAGGAGGAGAAC 120 consensus_13785#3 ------------------------------------------------------------ consensus_13785#2 ------------------------------------------------------------ consensus_13785#1 ------------------------------------------------------------ consensus_13785#0 GTGACGCTCGGCCCCACGGTCCGCGAGGGCGAGTACGTCTTCGGCGTCGCGCACATCTTC 180 consensus_13785#3 ------------------------------------------------------------ consensus_13785#2 ------------------------------------------------------------ consensus_13785#1 ------------------------------------------------------------ consensus_13785#0 GCGTCGTTCAACGACACCTTCATCCACGTGACGGATCTGTCCGGCAGGGAGACGCTCGTC 240 consensus_13785#3 ------------------------------------------------------------ consensus_13785#2 ------------------------------------------------------------ consensus_13785#1 ------------------------------------------------------------ consensus_13785#0 CGCATCACCGGTGGCATGAAGGTGAAAGCTGACCGTGATGAGTCATCCCCTTATGCTGCC 300 consensus_13785#3 ------------------------------------------------------------ consensus_13785#2 ------------------------------------------------------------ consensus_13785#1 ------------------------------------------------------------ consensus_13785#0 ATGCTTGCATCCCAGGATGTTGCACAGAGATGCAAGGAGCTTGGAATTACTGCTCTGCAC 360 consensus_13785#3 ------------------------------------------------------------ consensus_13785#2 ------------------------------------------------------------ consensus_13785#1 ------------------------------------------------------------ consensus_13785#0 ATTAAGCTCCGTGCTACTGGTGGAAACAAGACAAAAACTCCTGGTCCTGGTGCTCAATCT 420 consensus_13785#3 ------------------------------------------------------------ consensus_13785#2 ------------------------------------------------------------ consensus_13785#1 ------------------------------------------------------------ consensus_13785#0 GCGCTTAGAGCTCTTGCACGTTCTGGCATGAAGATTGGACGCATTGAGGATGTTACTCCA 480 consensus_13785#3 ------------------------------------------------------------ consensus_13785#2 ------------------------------------------------------------ consensus_13785#1 --------------------------------------TAGGATTTGTTGGGGTTTCATC 22 consensus_13785#0 GTCCCAACTGACAGTACCCGCAGAAAGGGTGGCAGAAGAGGAAGGAGGCTGTAATTCCGT 540 consensus_13785#3 --------------------------CACTGCCATGGACTGAAGGAGTCTGTAATTCCGT 34 consensus_13785#2 ---------------------------------------------------------CGT 3 consensus_13785#1 ATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 82 consensus_13785#0 GTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTG----T 596 consensus_13785#3 GTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTG----T 90 consensus_13785#2 GTAGTGCCTGTTATGGGGGGAAAGCAAAGCTATCTATCCTTGTCCTTGCAACTTG----T 59 consensus_13785#1 AAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTTCCCTTTCCTTACAAAAGGGCAAT 142 * * *** ** ** * * *** * ***** *** * * consensus_13785#0 TCTGTACTCTATTA-TGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGC-----TA 650 consensus_13785#3 TCTGTACTCTATTA-TGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGC-----TA 144 consensus_13785#2 TCTGTACTCTATTA-TGATCTTAGCATCGGATGTGGATTTATAAATTTTGAGC-----TA 113 consensus_13785#1 TTCCCGCCCTTTAAATTAATTCCCCCTTATAGGAATTCTTTTAAAATTCAATTGCCCGTC 202 * * ** * * * * * * * * * ** **** ** * * consensus_13785#0 TGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTAT--AAAGCCGATTATCTAAATTTT 708 consensus_13785#3 TGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTAT--AATTTCTATTATCTAAA---- 198 consensus_13785#2 TGTTATGTTCTTTAGAAGATGAATGACCTCCCCCTAT--AGAGCCGATTATCTAAATTTT 171 consensus_13785#1 TTTTAAAAACTTCGAAATTGGAAAACCCTTGCCTTACCCAAATTAAATCCCTTTGAAAAA 262 * *** *** ** *** *** ** ** * ** * * consensus_13785#0 GGTTGCTGTTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 768 consensus_13785#3 ----------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 248 consensus_13785#2 GGTTGCTGTTATCACANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAA 231 consensus_13785#1 AATCCCCTTTTCCCCACTTGGCTAAAAACAAAAAAGCCCCCCCCCAATCCCCTTTCCAAA 322 * ***** ****** ** ** consensus_13785#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTGCCCTTTCCTTAGA 828 consensus_13785#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------- 283 consensus_13785#2 AAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 291 consensus_13785#1 AATTTGCCCACCTTATACTTCCGGAATTTAAAGGTTAACCCCTATAAA------------ 370 ** * * ** *** consensus_13785#0 AGGGGGGAATTTTTTTAAACCCGGGGGGATTTCCCCTTTAGGGGGGGGTAATTTTGGACT 888 consensus_13785#3 ------------------------------------------------------------ consensus_13785#2 AAAAAAAAAAAAAAAAAAA----------------------------------------- 310 consensus_13785#1 ------------------------------------------------------------ consensus_13785#0 GGGGGAAAAAAGGGGCAAAACTTTTTCCGGGGGAAAATTGTTTTCCCTTCAAAATTCCCC 948 consensus_13785#3 ------------------------------------------------------------ consensus_13785#2 ------------------------------------------------------------ consensus_13785#1 ------------------------------------------------------------ consensus_13785#0 CAAAAATTAAAACCGGAAACATAAAGGGGAAAC 981 consensus_13785#3 --------------------------------- consensus_13785#2 --------------------------------- consensus_13785#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||