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Oryza sativa
cluster # 13796 cluster # 13796       Sequences # 14       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13796#0 length = 1818 sequences # 13  
consensus_13796#1 length = 262 sequences # 1  

consensusID : consensus_13796#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 1818
fasta sequence
                              [CCCCCGTTCTCTCCTCCCCATCTCCAACGCACGCACGCGCCATCACCACCACCTCGACGCCGGCGGCGACGACCACGGCGACGGCAACGGCGGCGGCGGCAGAGAAGCCCTCCTCATCCCCAAGATGGACAGCCATAACTCAGCACCTCCCCAGATTGCTGAAGTGAGAATGGACATCTCATCATCTACTTCTGTAGCAGCTGGGAACAAAGTTTGCAGAGGTGCTGCTTGTGACTTTTCTGATTCCAGTAATAGCTCAAAAGATGCAAGGGAGAGAATGGCGTCAATGAGGAAGCTCATTATTGCTGTGATCCTTTGCATCATATTCATGGCGGTCGAAGTGGTTGGAGGTATCAAAGCAAACAG-TTTGGCAATCTTGACTGATGCAGCCCATCTCCTTTCGGATGTTGCGGCCTTTGCCATATCTTTGTTCTCTCTTTGGGCAGCTGGATGGGAAGCTACACCACAGCAGTCATATGGGTTTTTCCGTATAGAAATTCTTGGTGCCCTGGTTTCTATTCAGCTCATATGGCTCCTTGCTGGTATTCTTGTCTATGAAGCTATTGTAAGGCTCATTAATGAAAGTGGTGAGGTCCAGGGCTCCCTCATGTTTGCTGTCTCAGCATTTGGCTTATTTGTTAACATCATAATGGCTGTCTTGCTTGGTCATGACCATGGACATGGACACGGACATGGTCATGGGCATGGACATTCCCATGACCATGATCATGGTGGTTCTGACCATGACCATCACCACCATGAAGATCAAGAGCATGGCCATGTACATCACCACGAAGATGGCCATGGTAATTCAATTACCGTCAATCTCCATCACCATCCAGGCACTGGACACCACCACCATGATGCTGAGGAACCATTGCTCAAGAGTGATGCTGGTTGTGACAGCACCCAATCTGGTGCCAAGGATGCCAAGAAGGCTCGTCGTAATATCAATGTACACAGTGCTTATCTGCATGTGCTTGGGGATTCAATCCAGAGCATCGGTGTGATGATTGGAGGGGCTATCATCTGGTACAAGCCCGAGTGGAAGATTATTGATCTCATCTGCACCCTCATCTTCTCCGTGATCGTACTCTTCACCACAATCAAGATGCTGCGCAACATCCTTGAGGTCCTGATGGAGAGCACGCCCCGCGAGATCGATGCCACCAGCCTTGAGAATGGCCTCCGCGACATGGACGGTGTGGTTGCAGTACATGAGCTGCACATCTGGGCCATAACGGTGGGGAAGGTTCTCCTGGCGTGCCATGTGACAATCACTCAGGACGCAGACGCTGATCAAATGCTGGACAAGGTGATTGGGTACATCAAGTCTGAGTACAACATCAGCCATGT-GACCATTCAGATTGAGCGCGAGTAGG-CTTGACCGCTTGAGACAGGTAGGTAGTGTTGATGATAGAACGGATCATCTTCATCTCATCTCATGGGACCAACTTATCAGGAACCTGTTTCACTGGTTTTATGCAGTTACTGTTAGCTCTGCAGTGCAAA-TCA-GATCAGCAGAGTCCAACAATTCCTGCA-GGTTCATCTGAATGTTAGCTTCTGATGCTGTTTATTACTATAAGTACGTGTTATTAGTACTATC-TTAGTCA-ATTAGGTGAGTTGATGTTAA-T-CAGTTTCGTAGTCGGTTGTATTCACATGGGTGCAGTTTTCAGACAAGTTTTCAGGCACCTGTGAGTACGTCAACCTGCCTTCTGCGTCTGTAGTCTAGCGCCCAGCCG-TACTAGTTT-TTATGTAAATCTGCACTGGCATGGGAAATAATAACCAAGTTTCGTTTGGCCTTAAAAAAAAAAAAAA]

[+] EMBL AK100735             [CCCCCGTTCTCTCCTCCCCATCTCCAACGCACGCACGCGCCATCACCACCACCTCGACGCCGGCGGCGACGACCACGGCGACGGCAACGGCGGCGGCGGCAGAGAAGCCCTCCTCATCCCCAAGATGGACAGCCATAACTCAGCACCTCCCCAGATTGCTGAAGTGAGAATGGACATCTCATCATCTACTTCTGTAGCAGCTGGGAACAAAGTTTGCAGAGGTGCTGCTTGTGACTTTTCTGATTCCAGTAATAGCTCAAAAGATGCAAGGGAGAGAATGGCGTCAATGAGGAAGCTCATTATTGCTGTGATCCTTTGCATCATATTCATGGCGGTCGAAGTGGTTGGAGGTATCAAAGCAAACAG TTTGGCAATCTTGACTGATGCAGCCCATCTCCTTTCGGATGTTGCGGCCTTTGCCATATCTTTGTTCTCTCTTTGGGCAGCTGGATGGGAAGCTACACCACAGCAGTCATATGGGTTTTTCCGTATAGAAATTCTTGGTGCCCTGGTTTCTATTCAGCTCATATGGCTCCTTGCTGGTATTCTTGTCTATGAAGCTATTGTAAGGCTCATTAATGAAAGTGGTGAGGTCCAGGGCTCCCTCATGTTTGCTGTCTCAGCATTTGGCTTATTTGTTAACATCATAATGGCTGTCTTGCTTGGTCATGACCATGGACATGGACACGGACATGGTCATGGGCATGGACATTCCCATGACCATGATCATGGTGGTTCTGACCATGACCATCACCACCATGAAGATCAAGAGCATGGCCATGTACATCACCACGAAGATGGCCATGGTAATTCAATTACCGTCAATCTCCATCACCATCCAGGCACTGGACACCACCACCATGATGCTGAGGAACCATTGCTCAAGAGTGATGCTGGTTGTGACAGCACCCAATCTGGTGCCAAGGATGCCAAGAAGGCTCGTCGTAATATCAATGTACACAGTGCTTATCTGCATGTGCTTGGGGATTCAATCCAGAGCATCGGTGTGATGATTGGAGGGGCTATCATCTGGTACAAGCCCGAGTGGAAGATTATTGATCTCATCTGCACCCTCATCTTTTCCGTGATCGTACTCTTCACCACAATCAAGATGCTGCGCAACATCCTTGAGGTCCTGATGGAGAGCACGCCCCGCGAGATCGATGCCACCAGCCTTGAGAATGGCCTCCGCGACATGGACGGTGTGGTTGCAGTACATGAGCTGCACATCTGGGCCATAACGGTGGGGAAGGTTCTCCTGGCGTGCCATGTGACAATCACTCAGGACGCAGACGCTGATCAAATGCTGGACAAGGTGATTGGGTACATCAAGTCTGAGTACAACATCAGCCATGT GACCATTCAGATTGAGCGCGAGTAGG CTTGACCGCTTGAGACAGGTAGGTAGTGTTGATGATAGAACGGATCATCTTCATCTCATCTCATGGGACCAACTTATCAGGAACCTGTTTCACTGGTTTTATGCAGTTACTGTTAGCTCTGCAGTGCAAA TCA GATCAGCAGAGTCCAACAATTCCTGCA GGTTCATCTGAATGTTAGCTTCTGATGCTGTTTATTACTATAAGTACGTGTTATTAGTACTATC TTAGTCA ATTAGGTGAGTTGATGTTAA T CAGTTTCGTAGTCGGTTGTATTCACATGGGTGCAGTTTTCAGACAAGTTTTCAGGCACCTGTGAGTACGTCAACCTGCCTTCTGCGTCTGTAGTCTAGCGCCCAGCCG TACTAGTTT TTATGTAAATCTGCACTGGCATGGGAAATAATAACCAAGTTTC                        ]
[+] EMBL CF297375             [ CCCCGTTCTCTCCTCCCCATCTCCAACGCACGCACGCGCCATCACCACCACCTCGACGCCGGCGGCGACGACCACGGCGACGGCAACGGCGGCGGCGGCAGAGAAGCCCTCCTCATCCCCAAGATGGACAGCCATAACTCAGCACCTCCCCAGATTGCTGAAGTGAGAATGGACATCTCATCATCTACTTCTGTAGCAGCTGGGAACAAAGTTTGCAGAGGTGCTGCTTGTGACTTTTCTGATTCCAGTAATAGCTCAAAAGATGCAAGGGAGAGAATGGCGTCAATGAGGAAGCTCATTATTGCTGTGATCCTTTGCATCATATTCATGGCGGTCGAAGTGGTTGGAGGTATCAAAGCAAACAG TTTGGCAATCTTGACTGATGCAGCCCATCTCCTTTCGGATGTTGCGGCCTTTGCCATATCTTTGTTCTCTCTTTGGGCAGCTGGATGGGAAGCTACACCACAGCAGTCATATGGGTTTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB643998             [                   ATCTCCAACGCACGCACGCGCCATCACCACCACCTCGACGCCGGCGGCGACGACCACGGCGACGGCAACGGCGGCGGCGGCAGAGAAGCCCTCCTCATCCCCAAGATGGACAGCCATAACTCAGCACCTCCCCAGATTGCTGAAGTGAGAATGGACATCTCATCATCTACTTCTGTAGCAGCTGGGAACAAAGTTTGCAGAGGTGCTGCTTGTGACTTTTCTGATTCCAGTAATAGCTCAAAAGATGCAAGGGAGAGAATGGCGTCAATGAGGAAGCTCATTATTGCTGTGATCCTTTGCATCATATTCATGGCGGTCGAAGTGGTTGGAGGTATCAAAGCAAACAG TTTGGCAATCTTGACTGATGCAGCCCATCTCCTTTCGGATGTTGCGGCCTTTGCCATATCTTTGTTCTCTCTTTGGGCAGCTGGATGGGAAGCTACACCACAGCAGTCATATGGGTTTTTCCGTATAGAAATTCTTGGTGCCCTGGTTTCTATTCAGCTCATATGGCTCCTTGCTGGTATTCTTGTCTATGAAGCTATTGTAAGGCTCATTAATGAAAGTGGTGAGGTCCAGGGCTCCCTCATGTTTGCTGTCTCAGCATTTGGCTTATTTGTTAACATCATAATGGCTGTCTTGCTTGGTCATGACCATGGACATGGACACGGACATGGTCATGGGCATGGACATTCCCATGACCATGATCATGGTGGTTCTGACCATGACCATCACCACCATGAAGATNCAGAGCATGGCCATGTACATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU070577             [                      TCCAACGCACGCACGCGCCATCACCACCACCTCGACGCCGGCGG GACGACCACNGCGACGGCAACGGCGGCGGCGGCAGAGAANCCCTCNTCATCCCCAAGATGGACAGCCATAACTCAGCACNTCCCCAGATTGCTGAAGTNAGAATNGACATCTCATCATCTACTTCTGTAGCAGCTGGGAACAAAGTTTGCAGAGGTGCTGCTTGTGACTTTTCTGATTCCAGTAATAGCTCAAAAGATGCAAGGGAGAGAATGGCGTCAATGAGGAAGCTCATTATTGCTGTGATNCTTTGCATCATATTCATGGCGGTCGAANTGGTTt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AY266290             [                                                                                                                                   GCCATAACTCAGCACCTCCCCAGATTGCTGAAGTGAGAATGGACATCTCATCATCTACTTCTGTAGCAGCTGGGAACAAAGTTTGCAGAGGTGCTGCTTGTGACTTTTCTGATTCCAGTAATAGCTCAAAAGATGCAAGGGAGAGAATGGCGTCACTGAGGAAGCTCATTATTGCTGTGATCCTTTGCATCATATTCATGGCGGTCGAAGTGGTTGGAGGTATCAAAGCAAACAG TTTGGCAATCTTGACTGATGCAGCCCATCTCCTTTCGGATGTTGCGGCCTTTGCCATATCTTTGTTCTCTCTTTGGGCAGCTGGATGGGAAGCTACACCACAGCAGTCATATGGGTTTTTCCGTATAGAAATTCTTGGTGCCCTGGTTTCTATTCAGCTCATATGGCTCCTTGCTGGTATTCTTGTCTATGAAGCTATTGTAAGGCTCATTAATGAAAGTGGTGAGGTCCAGGGCTCCCTCATGTTTGCTGTCTCAGCATTCGGCTTATTTGTTAACATCATAATGGCTGTCTTGCTTGGTCATGACCATGGACATGGACACGGACATGGTCATGGGCATGGACATTCCCATGACCATGATCATGGTGGTTCCGACCATGACCATCACCACCATGAAGATCAAGAGCATGGCCATGTACATCACCACGAAGATGGCCATGGTAATTCAATTACCGTCAATCTCCATCACCATCCAGGCACTGGACACCACCACCATGATGCTGAGGAACCATTGCTCAAGAGTGATGCTGGTTGTGACAGCACCCAATCTGGTGCCAAGGATGCCAAGAAGGCTCGTCGTAATATCAGTATACACAGTGCTTATCTGCATGTGCTTGGGGATTCAATCCAGAGCATCGGTGTGATGATTGGAGGGGCTATCATCTGGTACAAGCCCGAGTGGAAGATTATTGATCTCATCTGCACCCTCATCTTCTCCGTGATCGTACTCTTCACCACAATCAAGATGCTGCGCAACATCCTTGAGGTCCTGATGGAGAGCACGCCCCGCGAGATCGATGCCACCAGCCTTGAGAATGGCCTCCGCGACATGGACGGTGTGGTTGCAGTACATGAGCTGCACATCTGGGCCATAACGGTGGGGAAGGTTCTCCTGGCGTGCCATGTGACAATCACTCAGGACGCAGACGCTGATCAAATGCTGGACAAGGTGATTGGGTACATCAAGTCTGAGTACAACATCAGCCATGT GACCATTCAGATTGAGCGCGAGTAGG CTTGACCGCTTGAGACAGGTAGGTAGTGTTGATGACAGAACGGATCATCTTCATCTCATCTCATGGGACCAACTTATCAGGAACCTGTTTCACTGGTTTTATGCAGTTACTGTTAGCTCTGCAGTGCAAA TCA GATCAGCAGAGTCCAACAATTCCTGCA GGTTCATCTGAATGTTAGCTTCTGATGCTGTTTATTACTATAAGTACGTGTTATTAGTACTATC TTAGTCA ATTAGGTGAGTTGATGTTAA T CAGTTTCGTAGTCGGTTGTATTCACATGGGTGCAGTTTTCAGACAAGTTTTCAGGCACCTGTGAGTACGTCAACCTGCCTTCTGCGTCTGTAGTCTAGCGCCCAGCCG TACTAGTTT TTATGTAAATCTGCACTGGCATGGGAAATAATAACCAAGTTTCGTT                     ]
[+] EMBL CB658660             [                                                                                                                                                                                                                                                                                                  GGAACCTCATTATTGCTGAGATCCTTTGCATCATATTCATGGCGGTCCAAGTGGTTGGAGGTATCAAAGCAAACAGATTTGGCAATCTTGACTGATGCAGCCCATCTCCTTTCGGATGTTGCGGCCTTTGCCATATCTTTGTTCTCTCTTTGGGCAGCTGGATGGGAAGCTACACCACAGCAGTCATATGGGTTTTTCCGTATAGAAATTCTTGGTGCCCTGGTTTCTATTCAACTCATATGGCTCCTTGCTGGTATTCTTGTCTATGAAGCTATTGTAAGGCTCATTAATGAAAGTGGTGAGGTCCAAGGCTCCCTCATGTTTGCTGTCTCAGCATTTGGCTTATTTGATAACATCATAATGGCTGTCTTGCTTGGTCATGACCATGGACATGGACACAGACATGGTCATGGGCATGGACATTCCCATGACCATGATCATGGTGGTTCTGACCATGACCATCACCACCATGAATATCAACAGCATGGCCATGTACATCACCACGAACATGGCCATGGTAATTCAATTACCGTCAATCTCCATCACCATCCAGGCACTGGACACCACCACCATGATGCTGAAGAACCATTGCTCAATACTGATGCTGGTTGTGACAGCACCCAATCTGGTGCCAATGATGCCAAGAATGCTCGACGTAATATCAATGTACACAGTGCTTATCTACATGTGCTTGGGGATTCAATCCGGAGCATCTGAGAGATGATTGCATGGGCTATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CB658661             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GAGCATCGGTGTGATGATTGGAGGGGCTATCATCTGGTACAAGCCCGAGTGGAAGATTATTGATCTCATCTGCACCCTCATCTTCTCCGTGATCGTACTCTTCACCACAATCAAGATGCTGCGCAACATCCTTGAGGTCCTGATGGAGAGCACGCCCCGCGAGATCGATGCCACCAGCCTTGAGAATGGCCTCCGCGACATGGACGGTGTGGTTGCAGTACATGAGCTGCACATCTGGGCCATAACGGTGGGGAAGGTTCTCCTGGCGTGCCATGTGACAATCACTCAGGACGCAGACGCTGATCAAATGCTGGACAAGGTGATTGGGTACATCAAGTCTGAGTACAACATCAGCCATGT GACCATTCAGATTGAGCGCGAGTAGG CTTGACCGCTTGAGACAGGTAGGTAGTGTTGATGATAGAACGGATCATCTTCATCTCATCTCATGGGACCAACTTATCAGGAACCTGTTTCACTGGTTTTATGCAGTTACTGTTAGCTCTGCAGTGCAAA TCA GATCAGCAGAGTCCAACAATTCCTGCA GGTTCATCTGAATGTTAGCTTCTGGTGCTGTTTATTACTATAAGTACGTGTTATTAGTACTATC TTAGTCA ATTAGGTGAGTTGATGTTAA T CAGTTTCGTAGTCGGTTGTATTCACATGGGTGCAGTTTTCAGACAAGTTTTCAGGCACCTGTGAGTACGTCAACCTGCCTTCTGCGTCTGTAGTCTAGCGCCCAGCCG TACTAGTTT TTATGTAAATCTGCACTGGCAGGGGAAATAATAACCAAGTTTCGTTTGGCCTTA             ]
[-] EMBL CB643999             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTGATCTCATCTGCACCCTCATCTTCTCCGTGATCGTACTCTTCACCACAATCAAGATGCTGCGCAACATCCTTGAGGTCCTGATGGAGAGCACGCCCCGCGAGATCGATGCCACCAGCCTTGAGAATGGCCTCCGCGACATGGACGGTGTGGTTGCAGTACATGAGCTGCACATCTGGGCCATAACGGTGGGGAAGGTTCTCCTGGCGTGCCATGTGACAATCACTCAGGACGCAGACGCTGATCAAATGCTGGACAAGGTGATTGGGTACATCAAGTCTGAGTACAACATCAGCCATGT GACCATTCAGATTGAGCGCGAGTAGG CTTGACCGCTTGAGACAGGTAGGTAGTGTTGATGATAGAACGGATCATCTTCATCTCATCTCATGGGACCAACTTATCAGGAACCTGTTTCACTGGTTTTATGCAGTTACTGTTAGCTCTGCAGTGCAAA TCA GATCAGCAGAGTCCAACAATTCCTGCA GGTTCATCTGAATGTTAGCTTCTGATGCTGTTTATTACTATAAGTACGTGTTATTAGTACTATC TTAGTCA ATTAGGTGAGTTGATGTTAA T CAGTTTCGTAGTCGGTTGTATTCACATGGGTGCAGTTTTCAGACAAGTTTTCAGGCACCTGTGAGTACGTCAACCTGCCTTCTGCGTCTGTAGTCTAGCGCCCAGCCG TACTAGTTT TTATGTAAATCTGCACTGGCATGGGAAATAATAACCAAGTTTCGTTTGGCCTTAAAAAAAAAAAAAA]
[+] EMBL AU097415             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GAGACCACGCCCCGCGAGATCGATGCCACCAGCCTTGAGAATGGCCTCCGCGACATGGACGGTGTGGTTGCAGTACATGAGCTGCACATCTGGGCCATAACGGTGGGGAAGGTTCTCCTGGCGTGCCATGTGACAATCACTCAGGACGCAGACGCTGATCAAATGCTGGACAAGGTGATTGGGTACATCAAGTCTGAGTACAACATCAGCCATGT GACCATTCAGATTGAGCGCGAGTAGG CTTGACCGCTTGAGACAGGTAGGTAGTGTTGATGATAGAACGGATCATCTTCATCTCATCTCATGGGACCAACTTATCAGGAACCTGTTTCACTGGTTTTATGCAGTTACTGTTAGCTCTGCAGTGCAAA TCA GATCAGCAGAGTCCAACAATTCCTGCA GGTTCATCTGAATGTTAGCTTCTGATGCTGTTTATTACTATAAGTACGTGTTATTAGTACTATC TTAGTCA ATTAGGTGAGTTGATGTTAA T CAGTTTCGTAGTCGGTTGTATTCACATGGGTGCAGTTTTCAGACAAGTTTTCAGGCACCTGTGAGTACGTCAACCTGCCTTCTGCGTCTGTAGTCTAGCGCCCAGCCG TACTAGTTT TTATGTAAATCTGCACTGGCATGGGAAATAATAACCAAGTTTCGTTTGGCCTTATAAAAAAA     ]
[-] EMBL CF297376             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GACAAGGTGATTGGGTACATCAAGTCTGAGTACAACATCAGCCATGT  ACCATTCAGATTGAGCGCGAGTAGG CTTGACCGCTTGAGACAGGTAGGTAGTGTTGATGATAGAACGGATCATCTTCATCTCATCTCATGGGACCAACTTATCAGGAACCTGTTTCACTGGTTTTATGCAGTTACTGTTAGCTCTGCAGTGCAAA TCA GATCAGCAGAGTCCAACAATTCCTGCA GGTTCATCTGAATGTTAGCTTCTGATGCTGTTTATTACTATAAGTACGTGTTATTAGTACTATC TTAGTCA ATTAGGTGAGTTGATGTTAA T CAGTTTCGTAGTCGGTTGTATTCACGTGGGTGCAGTTTTCAGACAAGTTTTCAGGCACCTGTGAGTACGTCAACCTGCCTTCTGCGTCTGTAGTCTAGCGCCCAGCCG TACTAGTTT TTATGTAAATCTGCACTGGCATGGGAAATAATAACCAAGTTTCGTTTGGCCTTAAAAAAA       ]
[+] EMBL AU030725             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     cGATTGGGTACATCAAGTCTGAGTACAACATCAGCCATGT GACCATTCAGATTGAGCGCGAGTAGG CTTGACCGCTTGAGACAGGTAGGTAGTGTTGATGATAGAACGGATCATCTTCATCTCATCTCATGGGACCAACTTATCAGGAACCTGTTTCACTGGTTTTATGCAGTTACTGTTAGCTCTGCAGTGCAAA TCA GATCAGCAGAGTCCAACAATTCCTGCA GGTTCATCTGAATGTTAGCTTCTGATGCTGTTTATTACTATAAGTACGTGTTATTAGTACTATC TTAGTCA ATTAGGTGAGTTGATGTTAA T CAGTTTCGTAGTCGGTTGTATTCACATGGGTGCAGTTTTCAGACAAGTTTTCAGGCACCTGTGAGTACGTCAACCTGCCTTCTGCGTCTGTAGTCTAGCGCCCAGCCG TACTAGTTT TTATGTAAATCTGCACTGGCATGGGAAATAATAACCAAGTTTCGTTTGGCCTTAAAAAAAA      ]
[+] EMBL BI809084             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTACATCAAGTCTGAGGACAACATCAGCCATGT GACCATTCAGATTGAGCGCGAGTAGG CTTGACCGCTTGAGACAGGTAGGTAGTGTTGATGATAGAACGGATCATCTTCATCTCATCTCATGGGACCAACTTATCAGGAACCTGTTTCACTGGTTTTA CCAGTTACTGTTAGCTCTGCAGTGCAAA TCA GATCAGCAGAGTCCAACAATTCCTGCA GGTTCATCTGAATGTTAGCTTCTGATGCTGTTTATTACTATAAGTACGTGTTATTAGTACTATC TTAGTCA ATTAGGTGAGTTGATGTTAACT CAGTTTCGTAGTCGGTTGTATTCACATGGGTGCAGTTTTCAGACAAGTTTTCAGGCACCTGTGAGTACGTCAACCTGCCTTCTGCGTCTGTAGTCTAGCGCCCAGCCG TACTAGTTT TTATGTAAATCTGCACTGGCATGGGAAATAATAACGAAGTTTCGTTTGGCCTTTATAAAAAAAA   ]
[-] EMBL BU672916             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTACATCAAGTCTGAGTACAACATCAGCCATGTCGACCATTCAGATTGAGCGCGAGTAGGTCTTGCCCGCTTGAGACAGGTAGGTACTGTTGATGATAGAACGGATCATCGTCATCTCATCTCATGGGACCAACTTATCAGGTACCTGTTTCACGGGTTTTAAGCCGTTCCTGTTAGCTCTGCAGTGCAAACTCACGATCAGCAGAGTCCAACAATTCCTGCACGGTTCATCTGAATGTTAGCTTCTGATGCTGTTTCTTACTATAAGTACGTGTTACTAGTACGATCGTTAGTCATATTAGGTGAGTTGATGTTAA TACACTTTCGTAGTCGGTTGTATTCACATGGGTGCAGTTTTCAGACAAGTTTTCAGGCACCTGTGAGTACGTCAACCTGCCTTGTGCGTCTGTAGTCTAGCGCCCAGCCGCTAGTAGTTTATTATGTAAATCTGCACTGGCATGGGAAATAATAACGAAGTTTCGTTTGCCATTATAAA         ]


>consensus_13796#0 CCCCCGTTCTCTCCTCCCCATCTCCAACGCACGCACGCGCCATCACCACCACCTCGACGC CGGCGGCGACGACCACGGCGACGGCAACGGCGGCGGCGGCAGAGAAGCCCTCCTCATCCC CAAGATGGACAGCCATAACTCAGCACCTCCCCAGATTGCTGAAGTGAGAATGGACATCTC ATCATCTACTTCTGTAGCAGCTGGGAACAAAGTTTGCAGAGGTGCTGCTTGTGACTTTTC TGATTCCAGTAATAGCTCAAAAGATGCAAGGGAGAGAATGGCGTCAATGAGGAAGCTCAT TATTGCTGTGATCCTTTGCATCATATTCATGGCGGTCGAAGTGGTTGGAGGTATCAAAGC AAACAGTTTGGCAATCTTGACTGATGCAGCCCATCTCCTTTCGGATGTTGCGGCCTTTGC CATATCTTTGTTCTCTCTTTGGGCAGCTGGATGGGAAGCTACACCACAGCAGTCATATGG GTTTTTCCGTATAGAAATTCTTGGTGCCCTGGTTTCTATTCAGCTCATATGGCTCCTTGC TGGTATTCTTGTCTATGAAGCTATTGTAAGGCTCATTAATGAAAGTGGTGAGGTCCAGGG CTCCCTCATGTTTGCTGTCTCAGCATTTGGCTTATTTGTTAACATCATAATGGCTGTCTT GCTTGGTCATGACCATGGACATGGACACGGACATGGTCATGGGCATGGACATTCCCATGA CCATGATCATGGTGGTTCTGACCATGACCATCACCACCATGAAGATCAAGAGCATGGCCA TGTACATCACCACGAAGATGGCCATGGTAATTCAATTACCGTCAATCTCCATCACCATCC AGGCACTGGACACCACCACCATGATGCTGAGGAACCATTGCTCAAGAGTGATGCTGGTTG TGACAGCACCCAATCTGGTGCCAAGGATGCCAAGAAGGCTCGTCGTAATATCAATGTACA CAGTGCTTATCTGCATGTGCTTGGGGATTCAATCCAGAGCATCGGTGTGATGATTGGAGG GGCTATCATCTGGTACAAGCCCGAGTGGAAGATTATTGATCTCATCTGCACCCTCATCTT CTCCGTGATCGTACTCTTCACCACAATCAAGATGCTGCGCAACATCCTTGAGGTCCTGAT GGAGAGCACGCCCCGCGAGATCGATGCCACCAGCCTTGAGAATGGCCTCCGCGACATGGA CGGTGTGGTTGCAGTACATGAGCTGCACATCTGGGCCATAACGGTGGGGAAGGTTCTCCT GGCGTGCCATGTGACAATCACTCAGGACGCAGACGCTGATCAAATGCTGGACAAGGTGAT TGGGTACATCAAGTCTGAGTACAACATCAGCCATGTGACCATTCAGATTGAGCGCGAGTA GGCTTGACCGCTTGAGACAGGTAGGTAGTGTTGATGATAGAACGGATCATCTTCATCTCA TCTCATGGGACCAACTTATCAGGAACCTGTTTCACTGGTTTTATGCAGTTACTGTTAGCT CTGCAGTGCAAATCAGATCAGCAGAGTCCAACAATTCCTGCAGGTTCATCTGAATGTTAG CTTCTGATGCTGTTTATTACTATAAGTACGTGTTATTAGTACTATCTTAGTCAATTAGGT GAGTTGATGTTAATCAGTTTCGTAGTCGGTTGTATTCACATGGGTGCAGTTTTCAGACAA GTTTTCAGGCACCTGTGAGTACGTCAACCTGCCTTCTGCGTCTGTAGTCTAGCGCCCAGC CGTACTAGTTTTTATGTAAATCTGCACTGGCATGGGAAATAATAACCAAGTTTCGTTTGG CCTTAAAAAAAAAAAAAA



consensusID : consensus_13796#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 262
fasta sequence
                              [GTGCATCAGAAGAATAGCAGCTGATGACTGCTGATTATCAACTATAAGTACGTGATTAATAGTACTATCATACTCAATTAGGTGAGTAGATGTTAACCAGTTTCGATAGTCGGTGGAATTAACCATGGGTGCAGTTTTCAGACAAGTTTTCAGGCACCTGTGAGTACGTCAACCTGCCTTCTGCGTCTGTAGTCTAGCGCCCAGCCGTACTAGTTTTTATGTAAATCTGCACTGGCATGGGAAATAATAACGAAGTTTCGTT]

[-] EMBL BU672995             [GTGCATCAGAAGAATAGCAGCTGATGACTGCTGATTATCAACTATAAGTACGTGATTAATAGTACTATCATACTCAATTAGGTGAGTAGATGTTAACCAGTTTCGATAGTCGGTGGAATTAACCATGGGTGCAGTTTTCAGACAAGTTTTCAGGCACCTGTGAGTACGTCAACCTGCCTTCTGCGTCTGTAGTCTAGCGCCCAGCCGTACTAGTTTTTATGTAAATCTGCACTGGCATGGGAAATAATAACGAAGTTTCGTT]


>consensus_13796#1 GTGCATCAGAAGAATAGCAGCTGATGACTGCTGATTATCAACTATAAGTACGTGATTAAT AGTACTATCATACTCAATTAGGTGAGTAGATGTTAACCAGTTTCGATAGTCGGTGGAATT AACCATGGGTGCAGTTTTCAGACAAGTTTTCAGGCACCTGTGAGTACGTCAACCTGCCTT CTGCGTCTGTAGTCTAGCGCCCAGCCGTACTAGTTTTTATGTAAATCTGCACTGGCATGG GAAATAATAACGAAGTTTCGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13796#0      CCCCCGTTCTCTCCTCCCCATCTCCAACGCACGCACGCGCCATCACCACCACCTCGACGC 60
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      CGGCGGCGACGACCACGGCGACGGCAACGGCGGCGGCGGCAGAGAAGCCCTCCTCATCCC 120
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      CAAGATGGACAGCCATAACTCAGCACCTCCCCAGATTGCTGAAGTGAGAATGGACATCTC 180
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      ATCATCTACTTCTGTAGCAGCTGGGAACAAAGTTTGCAGAGGTGCTGCTTGTGACTTTTC 240
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      TGATTCCAGTAATAGCTCAAAAGATGCAAGGGAGAGAATGGCGTCAATGAGGAAGCTCAT 300
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      TATTGCTGTGATCCTTTGCATCATATTCATGGCGGTCGAAGTGGTTGGAGGTATCAAAGC 360
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      AAACAGTTTGGCAATCTTGACTGATGCAGCCCATCTCCTTTCGGATGTTGCGGCCTTTGC 420
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      CATATCTTTGTTCTCTCTTTGGGCAGCTGGATGGGAAGCTACACCACAGCAGTCATATGG 480
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      GTTTTTCCGTATAGAAATTCTTGGTGCCCTGGTTTCTATTCAGCTCATATGGCTCCTTGC 540
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      TGGTATTCTTGTCTATGAAGCTATTGTAAGGCTCATTAATGAAAGTGGTGAGGTCCAGGG 600
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      CTCCCTCATGTTTGCTGTCTCAGCATTTGGCTTATTTGTTAACATCATAATGGCTGTCTT 660
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      GCTTGGTCATGACCATGGACATGGACACGGACATGGTCATGGGCATGGACATTCCCATGA 720
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      CCATGATCATGGTGGTTCTGACCATGACCATCACCACCATGAAGATCAAGAGCATGGCCA 780
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      TGTACATCACCACGAAGATGGCCATGGTAATTCAATTACCGTCAATCTCCATCACCATCC 840
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      AGGCACTGGACACCACCACCATGATGCTGAGGAACCATTGCTCAAGAGTGATGCTGGTTG 900
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      TGACAGCACCCAATCTGGTGCCAAGGATGCCAAGAAGGCTCGTCGTAATATCAATGTACA 960
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      CAGTGCTTATCTGCATGTGCTTGGGGATTCAATCCAGAGCATCGGTGTGATGATTGGAGG 1020
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      GGCTATCATCTGGTACAAGCCCGAGTGGAAGATTATTGATCTCATCTGCACCCTCATCTT 1080
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      CTCCGTGATCGTACTCTTCACCACAATCAAGATGCTGCGCAACATCCTTGAGGTCCTGAT 1140
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      GGAGAGCACGCCCCGCGAGATCGATGCCACCAGCCTTGAGAATGGCCTCCGCGACATGGA 1200
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      CGGTGTGGTTGCAGTACATGAGCTGCACATCTGGGCCATAACGGTGGGGAAGGTTCTCCT 1260
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      GGCGTGCCATGTGACAATCACTCAGGACGCAGACGCTGATCAAATGCTGGACAAGGTGAT 1320
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      TGGGTACATCAAGTCTGAGTACAACATCAGCCATGTGACCATTCAGATTGAGCGCGAGTA 1380
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      GGCTTGACCGCTTGAGACAGGTAGGTAGTGTTGATGATAGAACGGATCATCTTCATCTCA 1440
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      TCTCATGGGACCAACTTATCAGGAACCTGTTTCACTGGTTTTATGCAGTTACTGTTAGCT 1500
consensus_13796#1      ------------------------------------------------------------
                                                                                   

consensus_13796#0      CTGCAGTGCAAATCAGATCAGCAGAGTCCAACAATTCCTGCAGGTTCATCTGAATGTTAG 1560
consensus_13796#1      -------------------------------------------GTGCATCAGAAGAATAG 17
                                                                  ** **** ***   ***

consensus_13796#0      CTTCTGATG-CTGTTTATTA----CTATAAGTACGTG-TTATTAGTACTATCTTAGTCAA 1614
consensus_13796#1      CAGCTGATGACTGCTGATTATCAACTATAAGTACGTGATTAATAGTACTATCATACTCAA 77
                       *  ****** *** * ****    ************* *** ********** ** ****

consensus_13796#0      TTAGGTGAGTTGATGTTAATCAGTTTCG-TAGTCGGTTGTATTCAC-ATGGGTGCAGTTT 1672
consensus_13796#1      TTAGGTGAGTAGATGTTAACCAGTTTCGATAGTCGGTGGAATTAACCATGGGTGCAGTTT 137
                       ********** ******** ******** ******** * *** ** *************

consensus_13796#0      TCAGACAAGTTTTCAGGCACCTGTGAGTACGTCAACCTGCCTTCTGCGTCTGTAGTCTAG 1732
consensus_13796#1      TCAGACAAGTTTTCAGGCACCTGTGAGTACGTCAACCTGCCTTCTGCGTCTGTAGTCTAG 197
                       ************************************************************

consensus_13796#0      CGCCCAGCCGTACTAGTTTTTATGTAAATCTGCACTGGCATGGGAAATAATAACCAAGTT 1792
consensus_13796#1      CGCCCAGCCGTACTAGTTTTTATGTAAATCTGCACTGGCATGGGAAATAATAACGAAGTT 257
                       ****************************************************** *****

consensus_13796#0      TCGTTTGGCCTTAAAAAAAAAAAAAA 1818
consensus_13796#1      TCGTT--------------------- 262
                       *****                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)