cluster # 138

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Oryza sativa
cluster # 138 cluster # 138 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_138#0 length = 758 sequences # 1

consensus_138#1 length = 691 sequences # 1

consensusID : consensus_138#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 758
fasta sequence

                              [TGATGCTAAGTCCCAGTTGGAAGCCGTGTGCTCCGGGGTGGTATCCTGTGCTGATATATTGGCTCTCGCTGCACGCGATGCCGTTGATTTGACCGGTGGGCCAAGCTGGTCAGTCCCACTGGGACGGAGAGATGGAAGAATTTCATCAGCTTCAGATGCCAAAGCCTTGCCGTCTCCGGCTGATCCTGTATCTGTTCAGAGGCAAAAATTTGCAGCTCAAGGCCTGACGGACCGTGAGCTCGTAACACTAGTTGGTGCTCACACCATCGGGCAGACGGACTGCATCTTTTTCCGGTACCGGCTCTACAACTTCACGGCGACGGGGAACGCGGACCCGACGATCAGCCCGTCGGCGCTGCCGCAGCTGCGGGCGCTGTGCCCGCCCGCCGGCGACGGCTCCCGGCGCGTGGCGCTGGACCTGGGCAGCCCGGGGGCGTTCGACGTGAGCTTCTTCAAGAACGTCAGGGACGGCGGCGCCGTGCTGGAGTCCGACCAGCGGCTGTGGGGCGACGCCGCGACGCAGGCCGCCGTGCAGAGCTTCGCCGGCAACGTCAGGGGGCTCTTCGGCCTCCGGTTCAGCTACGAGTTCCCCAAGGCCATGGTCAGGATGAGCAGCATCGCCGTCAAGACCGGCAGCCAGGGCGAGATCAGGAGGAAGTGCTCCAAGTTCAACTAGGTGCAGTAGCCCAGTCGACAGTGAATTTTGTGATCGATCGAGTCACCTGTCCTGAATGATATTGATATATGTACACATGCTG]

[+] EMBL AK058554             [TGATGCTAAGTCCCAGTTGGAAGCCGTGTGCTCCGGGGTGGTATCCTGTGCTGATATATTGGCTCTCGCTGCACGCGATGCCGTTGATTTGACCGGTGGGCCAAGCTGGTCAGTCCCACTGGGACGGAGAGATGGAAGAATTTCATCAGCTTCAGATGCCAAAGCCTTGCCGTCTCCGGCTGATCCTGTATCTGTTCAGAGGCAAAAATTTGCAGCTCAAGGCCTGACGGACCGTGAGCTCGTAACACTAGTTGGTGCTCACACCATCGGGCAGACGGACTGCATCTTTTTCCGGTACCGGCTCTACAACTTCACGGCGACGGGGAACGCGGACCCGACGATCAGCCCGTCGGCGCTGCCGCAGCTGCGGGCGCTGTGCCCGCCCGCCGGCGACGGCTCCCGGCGCGTGGCGCTGGACCTGGGCAGCCCGGGGGCGTTCGACGTGAGCTTCTTCAAGAACGTCAGGGACGGCGGCGCCGTGCTGGAGTCCGACCAGCGGCTGTGGGGCGACGCCGCGACGCAGGCCGCCGTGCAGAGCTTCGCCGGCAACGTCAGGGGGCTCTTCGGCCTCCGGTTCAGCTACGAGTTCCCCAAGGCCATGGTCAGGATGAGCAGCATCGCCGTCAAGACCGGCAGCCAGGGCGAGATCAGGAGGAAGTGCTCCAAGTTCAACTAGGTGCAGTAGCCCAGTCGACAGTGAATTTTGTGATCGATCGAGTCACCTGTCCTGAATGATATTGATATATGTACACATGCTG]




>consensus_138#0
TGATGCTAAGTCCCAGTTGGAAGCCGTGTGCTCCGGGGTGGTATCCTGTGCTGATATATT
GGCTCTCGCTGCACGCGATGCCGTTGATTTGACCGGTGGGCCAAGCTGGTCAGTCCCACT
GGGACGGAGAGATGGAAGAATTTCATCAGCTTCAGATGCCAAAGCCTTGCCGTCTCCGGC
TGATCCTGTATCTGTTCAGAGGCAAAAATTTGCAGCTCAAGGCCTGACGGACCGTGAGCT
CGTAACACTAGTTGGTGCTCACACCATCGGGCAGACGGACTGCATCTTTTTCCGGTACCG
GCTCTACAACTTCACGGCGACGGGGAACGCGGACCCGACGATCAGCCCGTCGGCGCTGCC
GCAGCTGCGGGCGCTGTGCCCGCCCGCCGGCGACGGCTCCCGGCGCGTGGCGCTGGACCT
GGGCAGCCCGGGGGCGTTCGACGTGAGCTTCTTCAAGAACGTCAGGGACGGCGGCGCCGT
GCTGGAGTCCGACCAGCGGCTGTGGGGCGACGCCGCGACGCAGGCCGCCGTGCAGAGCTT
CGCCGGCAACGTCAGGGGGCTCTTCGGCCTCCGGTTCAGCTACGAGTTCCCCAAGGCCAT
GGTCAGGATGAGCAGCATCGCCGTCAAGACCGGCAGCCAGGGCGAGATCAGGAGGAAGTG
CTCCAAGTTCAACTAGGTGCAGTAGCCCAGTCGACAGTGAATTTTGTGATCGATCGAGTC
ACCTGTCCTGAATGATATTGATATATGTACACATGCTG

consensusID : consensus_138#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence

                              [CCAGGCTTGCTCAGGCTACATTTCCATGACTGTTTTGTTCAAGGATGTGATGCGTCAGTTTTGATTTCAGGTGCATCCTCTGACTGGACTGCACCACAGAATTTTGGTATCAGGGGGTTTGAAGTGATAGATGATGCTAAGTCCCAGTTGGAAGCCGTATGCTCCGGGGTGGTATCCTGTGCTGATATATTGGCTCTCGCTGCACGCGATGCCGTTGATTTGACCGGTGGGCCAAGCTGGTCAGTCCCACTGGGACGGAGAGATGGAAGAATTTCATCAGCTTCAGATGCCAAAGCCTTGCCGTCTCCGGCTGATCCTGTATCTGTTCAGAGGCAAAAATTTGCAGCTCAAGGCCTGACGGACCGTGAGCTCGTAACACTAGTTGGTGCTCACACCATCGGGCAGACGGACTGTATCTTTTTTCGGTACCCGGTCTACAACTTTACGGCGACGGTGAACGCGGTCCCCGACCGATCATTTCGTTGGCGCTGCCGCATTTGCGGTCGTTGTGCCTCTCCCATGGTTACCGTTTCTCGTGCGTGGTGCTGCACCTGTGTCTTCCGTGGTCGTTTTCTTTTACTTCTTTATTATCTTTTTGTCCGTCGTTCTTTGTTTCAATTTCTTTTTTTCGTTTTTGGGTTCAATTTATTCACTTATTCTCCTGTTTTACATTATCCCTCGCCCTTCTTTT]

[+] EMBL BE041104             [CCAGGCTTGCTCAGGCTACATTTCCATGACTGTTTTGTTCAAGGATGTGATGCGTCAGTTTTGATTTCAGGTGCATCCTCTGACTGGACTGCACCACAGAATTTTGGTATCAGGGGGTTTGAAGTGATAGATGATGCTAAGTCCCAGTTGGAAGCCGTATGCTCCGGGGTGGTATCCTGTGCTGATATATTGGCTCTCGCTGCACGCGATGCCGTTGATTTGACCGGTGGGCCAAGCTGGTCAGTCCCACTGGGACGGAGAGATGGAAGAATTTCATCAGCTTCAGATGCCAAAGCCTTGCCGTCTCCGGCTGATCCTGTATCTGTTCAGAGGCAAAAATTTGCAGCTCAAGGCCTGACGGACCGTGAGCTCGTAACACTAGTTGGTGCTCACACCATCGGGCAGACGGACTGTATCTTTTTTCGGTACCCGGTCTACAACTTTACGGCGACGGTGAACGCGGTCCCCGACCGATCATTTCGTTGGCGCTGCCGCATTTGCGGTCGTTGTGCCTCTCCCATGGTTACCGTTTCTCGTGCGTGGTGCTGCACCTGTGTCTTCCGTGGTCGTTTTCTTTTACTTCTTTATTATCTTTTTGTCCGTCGTTCTTTGTTTCAATTTCTTTTTTTCGTTTTTGGGTTCAATTTATTCACTTATTCTCCTGTTTTACATTATCCCTCGCCCTTCTTTT]




>consensus_138#1
CCAGGCTTGCTCAGGCTACATTTCCATGACTGTTTTGTTCAAGGATGTGATGCGTCAGTT
TTGATTTCAGGTGCATCCTCTGACTGGACTGCACCACAGAATTTTGGTATCAGGGGGTTT
GAAGTGATAGATGATGCTAAGTCCCAGTTGGAAGCCGTATGCTCCGGGGTGGTATCCTGT
GCTGATATATTGGCTCTCGCTGCACGCGATGCCGTTGATTTGACCGGTGGGCCAAGCTGG
TCAGTCCCACTGGGACGGAGAGATGGAAGAATTTCATCAGCTTCAGATGCCAAAGCCTTG
CCGTCTCCGGCTGATCCTGTATCTGTTCAGAGGCAAAAATTTGCAGCTCAAGGCCTGACG
GACCGTGAGCTCGTAACACTAGTTGGTGCTCACACCATCGGGCAGACGGACTGTATCTTT
TTTCGGTACCCGGTCTACAACTTTACGGCGACGGTGAACGCGGTCCCCGACCGATCATTT
CGTTGGCGCTGCCGCATTTGCGGTCGTTGTGCCTCTCCCATGGTTACCGTTTCTCGTGCG
TGGTGCTGCACCTGTGTCTTCCGTGGTCGTTTTCTTTTACTTCTTTATTATCTTTTTGTC
CGTCGTTCTTTGTTTCAATTTCTTTTTTTCGTTTTTGGGTTCAATTTATTCACTTATTCT
CCTGTTTTACATTATCCCTCGCCCTTCTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_138#0      ------------------------------------------------------------
consensus_138#1      CCAGGCTTGCTCAGGCTACATTTCCATGACTGTTTTGTTCAAGGATGTGATGCGTCAGTT 60
                                                                                 

consensus_138#0      ------------------------------------------------------------
consensus_138#1      TTGATTTCAGGTGCATCCTCTGACTGGACTGCACCACAGAATTTTGGTATCAGGGGGTTT 120
                                                                                 

consensus_138#0      -----------TGATGCTAAGTCCCAGTTGGAAGCCGTGTGCTCCGGGGTGGTATCCTGT 49
consensus_138#1      GAAGTGATAGATGATGCTAAGTCCCAGTTGGAAGCCGTATGCTCCGGGGTGGTATCCTGT 180
                                *************************** *********************

consensus_138#0      GCTGATATATTGGCTCTCGCTGCACGCGATGCCGTTGATTTGACCGGTGGGCCAAGCTGG 109
consensus_138#1      GCTGATATATTGGCTCTCGCTGCACGCGATGCCGTTGATTTGACCGGTGGGCCAAGCTGG 240
                     ************************************************************

consensus_138#0      TCAGTCCCACTGGGACGGAGAGATGGAAGAATTTCATCAGCTTCAGATGCCAAAGCCTTG 169
consensus_138#1      TCAGTCCCACTGGGACGGAGAGATGGAAGAATTTCATCAGCTTCAGATGCCAAAGCCTTG 300
                     ************************************************************

consensus_138#0      CCGTCTCCGGCTGATCCTGTATCTGTTCAGAGGCAAAAATTTGCAGCTCAAGGCCTGACG 229
consensus_138#1      CCGTCTCCGGCTGATCCTGTATCTGTTCAGAGGCAAAAATTTGCAGCTCAAGGCCTGACG 360
                     ************************************************************

consensus_138#0      GACCGTGAGCTCGTAACACTAGTTGGTGCTCACACCATCGGGCAGACGGACTGCATCTTT 289
consensus_138#1      GACCGTGAGCTCGTAACACTAGTTGGTGCTCACACCATCGGGCAGACGGACTGTATCTTT 420
                     ***************************************************** ******

consensus_138#0      TTCCGGTACCGGCTCTACAACTTCACGGCGACGGGGAACGCGGACCCGA--CGATCAGCC 347
consensus_138#1      TTTCGGTACCCGGTCTACAACTTTACGGCGACGGTGAACGCGGTCCCCGACCGATCATTT 480
                     ** ******* * ********** ********** ******** ***    ******   

consensus_138#0      CGTCGGCGCTGCCGCAGCTGCGGGCGCTGTGCCCGCCCGCCGGCGACGGCTCCCGGCGCG 407
consensus_138#1      CGTTGGCGCTGCCGCATTTGCGGTCGTTGTGCCTCTCCCATGGTTACCGTTTCTCGTGCG 540
                     *** ************  ***** ** ******   **   **  ** * * *  * ***

consensus_138#0      TGGCGCTGGACCTGGGCAGCCCGGGGGCGTTCGACGTGAGCTTCTTCAAGAACGTCAGGG 467
consensus_138#1      TGGTGCTGCACCTGTGTCTTCCGTGGTCGTTTT-CTTTTACTTCTTTATTATCTTTTTGT 599
                     *** **** ***** *    *** ** ****   * *   ****** *  * * *   * 

consensus_138#0      ACGGCGGCGCCGTGCTGGAGTCCGACCAGCGGCTGTGGGGCGACGCCGCGACGCAGGCCG 527
consensus_138#1      CCGTCGTTCTTTGTTTCAATTTCTTTTTTTCGTTTTTGGGTTCAATTTATTCACTTATTC 659
                      ** **         *  * * *        * * * ***           * *      

consensus_138#0      CCGTGCAGAGCTTCGCCGGCAACGTCAGGGGGCTCTTCGGCCTCCGGTTCAGCTACGAGT 587
consensus_138#1      TCCTGTTTTACATTATC-----CCTCGCCCTTCTTTT----------------------- 691
                      * **     * *   *     * **      ** **                       

consensus_138#0      TCCCCAAGGCCATGGTCAGGATGAGCAGCATCGCCGTCAAGACCGGCAGCCAGGGCGAGA 647
consensus_138#1      ------------------------------------------------------------
                                                                                 

consensus_138#0      TCAGGAGGAAGTGCTCCAAGTTCAACTAGGTGCAGTAGCCCAGTCGACAGTGAATTTTGT 707
consensus_138#1      ------------------------------------------------------------
                                                                                 

consensus_138#0      GATCGATCGAGTCACCTGTCCTGAATGATATTGATATATGTACACATGCTG 758
consensus_138#1      ---------------------------------------------------