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Oryza sativa
cluster # 13803 cluster # 13803       Sequences # 14       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13803#0 length = 920 sequences # 2  
consensus_13803#1 length = 718 sequences # 2  
consensus_13803#2 length = 706 sequences # 8  
consensus_13803#3 length = 330 sequences # 1  
consensus_13803#4 length = 146 sequences # 1  

consensusID : consensus_13803#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 920
fasta sequence
                              [TGTTTCATTTCATTTTAGTACACGCATTGGCGGCACCTGCATTCATAATTAAAAATTCGTCCTTCAGCTATAGAAATATAATTGCATCTCCATTTTTCGTCTTGCGAGTGAACCAAACATAAAGATCAAATGGGTAGCTCCAGTGTTCCAGAGCACCGTCGGCAGCTTGTCGCCGCCGTGGCTCTCATCCTCGCCGTCGCGGCC-GCCGTGGCGCCGCTGGGCGAGGCGCGTCGGCAGGCGGTGCGGCTGCGGGTGTACATGCACGACATCGTGGGCGGGGCGGGGCAGACGTCGGTGGTGGTGGTGAAGGGGCCGGGGCCGGCGAACCCGTCCATGTCGCCGGGGAACAACTTCGGGGACACGGTGATCATCGACGACGTGGTGACGGAGGGCCCAAGCCTGGCGTCCAGGGAGGTTGGGCGGGCGCAGGGGACGTACATGCTGGCGTCCATGGCGAGGCCGGTGTTCATCGTCGACATCACGGTGGTACTCACCGACGGGCCATACAACGGGAGCACCATCCTCATCGCCGGCCGCGACGACACCTCCGAGGAGGTCAGGGAGCTGGCGGTGGTCGGCGGCAGCGGGATGCTCCGGCGAGCGTCCGGGCACGTGCTGTGGAGGACGGCCAAGGTGGAGTCCAAGCTGCACGCCGTGCTGGAGCTCGACGTGCACGCCTCGGTGCCTGCTGCTGCTGTTGCTCCTAGTGGTAGTGGTAGCCATGGCCACCCATTTTTGGTGACCTCTGCCTCAGAGTAGACCACTCACAAACTACCAGTTAGGTGTGCAATTATCCTTTTGTCCTTTTTTTTTCTGAAATTATCTGCAATATCTTTTTTTCTGGACAATGAATTGCACACAATAATCAACATCGTTCATATATATACTGTGCCACCACGATCATCAATTTCAATTAATCA]

[-] EMBL AK065027             [TGTTTCATTTCATTTTAGTACACGCATTGGCGGCACCTGCATTCATAATTAAAAATTCGTCCTTCAGCTATAGAAATATAATTGCATCTCCATTTTTCGTCTTGCGAGTGAACCAAACATAAAGATCAAATGGGTAGCTCCAGTGTTCCAGAGCACCGTCGGCAGCTTGTCGCCGCCGTGGCTCTCATCCTCGCCGTCGCGGCC GCCGTGGCGCCGCTGGGCGAGGCGCGTCGGCAGGCGGTGCGGCTGCGGGTGTACATGCACGACATCGTGGGCGGGGCGGGGCAGACGTCGGTGGTGGTGGTGAAGGGGCCGGGGCCGGCGAACCCGTCCATGTCGCCGGGGAACAACTTCGGGGACACGGTGATCATCGACGACGTGGTGACGGAGGGCCCAAGCCTGGCGTCCAGGGAGGTTGGGCGGGCGCAGGGGACGTACATGCTGGCGTCCATGGCGAGGCCGGTGTTCATCGTCGACATCACGGTGGTACTCACCGACGGGCCATACAACGGGAGCACCATCCTCATCGCCGGCCGCGACGACACCTCCGAGGAGGTCAGGGAGCTGGCGGTGGTCGGCGGCAGCGGGATGCTCCGGCGAGCGTCCGGGCACGTGCTGTGGAGGACGGCCAAGGTGGAGTCCAAGCTGCACGCCGTGCTGGAGCTCGACGTGCACGCCTCGGTGCCTGCTGCTGCTGTTGCTCCTAGTGGTAGTGGTAGCCATGGCCACCCATTTTTGGTGACCTCTGCCTCAGAGTAGA                                                                                                                                                                ]
[+] EMBL AK062751             [                                                                                                                      ATAAAGATCAAATGGGTAGCTCCAGTGTTCCAGAGCACCGTCGGCAGCTTGTCGCCGCCGTGGCTCTCATCCTCGCCGTCGCGGCCTGCCGTGGCGCCGCTGGGCGAGGCGCGTCGGCAGGCGGTGCGGCTGCGGGTGTACATGCACGACATCGTGGGCGGGGCGGGGCAGACGTCGGTGGTGGTGGTGAAGGGGCCGGGGCCGGCGAACCCGTCCATGTCGCCGGGGAACAACTTCGGGGACACGGTGATCATCGACGACGTGGTGACGGAGGGCCCAAGCCTGGCGTCCAGGGAGGTTGGGCGGGCGCAGGGGACGTACATGCT TCGTCCATGGCGAGGCCGGTGTTCATCGTCGACATCACGGTGGTACTCACCGACGGGCCATACAACGGGAGCACCATCCTCATCGCCGGCCGCGACGACACCTCCGAGGAGGTCAGGGAGCTGGCGGTGGTCGGCGGCAGCGGGATGCTCCGGCGAGCGTCC GGCACGTGCTGTGGAGGACGGCCAAGGTGGAGTCCAAGCTGCACGCCGTGCTGGAGCTCGACGTGCACGCCTCGGTGCCTGCTGCTGCTGTTGCTCCTAGTGGTAGTGGTAGCCATGGCCACCCATTTTTGGTGACCTCTGCCTCAGAGTAGACCACTCACAAACTACCAGTTAGGTGTGCAATTATCCTTTTGTCCTTTTTTTTTCTGAAATTATCTGCAATATCTTTTTTTCTGGACAATGAATTGCACACAATAATCAACATCGTTCATATATATACTGTGCCACCACGATCATCAATTTCAATTAATCA]


>consensus_13803#0 TGTTTCATTTCATTTTAGTACACGCATTGGCGGCACCTGCATTCATAATTAAAAATTCGT CCTTCAGCTATAGAAATATAATTGCATCTCCATTTTTCGTCTTGCGAGTGAACCAAACAT AAAGATCAAATGGGTAGCTCCAGTGTTCCAGAGCACCGTCGGCAGCTTGTCGCCGCCGTG GCTCTCATCCTCGCCGTCGCGGCCGCCGTGGCGCCGCTGGGCGAGGCGCGTCGGCAGGCG GTGCGGCTGCGGGTGTACATGCACGACATCGTGGGCGGGGCGGGGCAGACGTCGGTGGTG GTGGTGAAGGGGCCGGGGCCGGCGAACCCGTCCATGTCGCCGGGGAACAACTTCGGGGAC ACGGTGATCATCGACGACGTGGTGACGGAGGGCCCAAGCCTGGCGTCCAGGGAGGTTGGG CGGGCGCAGGGGACGTACATGCTGGCGTCCATGGCGAGGCCGGTGTTCATCGTCGACATC ACGGTGGTACTCACCGACGGGCCATACAACGGGAGCACCATCCTCATCGCCGGCCGCGAC GACACCTCCGAGGAGGTCAGGGAGCTGGCGGTGGTCGGCGGCAGCGGGATGCTCCGGCGA GCGTCCGGGCACGTGCTGTGGAGGACGGCCAAGGTGGAGTCCAAGCTGCACGCCGTGCTG GAGCTCGACGTGCACGCCTCGGTGCCTGCTGCTGCTGTTGCTCCTAGTGGTAGTGGTAGC CATGGCCACCCATTTTTGGTGACCTCTGCCTCAGAGTAGACCACTCACAAACTACCAGTT AGGTGTGCAATTATCCTTTTGTCCTTTTTTTTTCTGAAATTATCTGCAATATCTTTTTTT CTGGACAATGAATTGCACACAATAATCAACATCGTTCATATATATACTGTGCCACCACGA TCATCAATTTCAATTAATCA



consensusID : consensus_13803#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 718
fasta sequence
                              [GGCCATCATCTCCATTGCCGGCCATCTCCTTGCTCTCATCCTCGCGGTGGCGGTGCCGGCCTCGGCCGGTGGGCTCCCGGTGCGGCTGCGGTTGTACATGCACGACATCACCGGCGGGCCGGGGCAGACGGCCGTGCAGGTGGTGAACGGCACCGGGCCGCTGCACCCGGCCATGCCGCCGGGCAGCCACTTCGGCGACACCATGGTGGTGGACGACCTCCTCACCGACGTCGACGACTCCAAGCCCGTCGGCCGCGCGCAGGGCTCCTACACGCTGGCGTGCCTGCGCGCCCCCGTGTTTGTGGTCTCCATCACCCTCGTCCTCACCGACGGGCCCTACAAGGGGAGCACCATCCTCATCGCCGGCCGCGACGACATCTCCGAGGAGGTCAGGGAGCTGGCGGTGGTGGGCGGGACGGGCAAGCTCCGGCGAGCCACCGGGCACGTGCTGTGGACGACGGCGAGGCGGGAGTCTCCGGTGCACATGGTGCTGGAGCTCGACGTGTACGCGTGGGTGCCCGCGTCATCTTCTCCGGCTCGCCGTTGGTCGTCACTGCTGCGTGGCACAAACGTCGTCACGGCTGATGTTGACGACGCTGATTCTTATTTCTAATTACTATACTTTACTACTCGAGTTGGTTGTGCATTTGTCGCAACCGCAACAAACATTTTCCTTCAATAATAAGAAAAAGGACAAATGATTGATCGATAAAAAAAA]

[+] EMBL AK108101             [GGCCATCATCTCCATTGCCGGCCATCTCCTTGCTCTCATCCTCGCGGTGGCGGTGCCGGCCTCGGCCGGTGGGCTCCCGGTGCGGCTGCGGTTGTACATGCACGACATCACCGGCGGGCCGGGGCAGACGGCCGTGCAGGTGGTGAACGGCACCGGGCCGCTGCACCCGGCCATGCCGCCGGGCAGCCACTTCGGCGACACCATGGTGGTGGACGACCTCCTCACCGACGTCGACGACTCCAAGCCCGTCGGCCGCGCGCAGGGCTCCTACACGCTGGCGTGCCTGCGCGCCCCCGTGTTTGTGGTCTCCATCACCCTCGTCCTCACCGACGGGCCCTACAAGGGGAGCACCATCCTCATCGCCGGCCGCGACGACATCTCCGAGGAGGTCAGGGAGCTGGCGGTGGTGGGCGGGACGGGCAAGCTCCGGCGAGCCACCGGGCACGTGCTGTGGACGACGGCGAGGCGGGAGTCTCCGGTGCACATGGTGCTGGAGCTCGACGTGTACGCGTGGGTGCCCGCGTCATCTTCTCCGGCTCGCCGTTGGTCGTCACTGCTGCGTGGCACAAACGTCGTCACGGCTGATGTTGACGACGCTGATTCTTATTTCTAATTACTATACTTTACTACTCGAGTTGGTTGTGCATTTGTCGCAACCGCAACAAACATTTTCCTTCAATAATAAGAAAAAGGACAAA                    ]
[+] EMBL BI803623             [                                                                                                                                                                                                                      GACCTCCTCACCGACGTCGACGACTCCAAGCCCGTC GCCGCGCCCAGGGCTCCTACACGCTGGCGTGCCTGCGCGCCCCCGTGTTTGTGGTCTCCATCACCCTCGTCCTCACCGACGGGCCCTACAAGGGGAGCACCATCCTCATCGCC GCCGCGACGACATCTCCGAGGAGGTCAGGGAGCT GCGGTGGTGGGCGGGACGGCCAAGCTCCGGCGAGCCACCGGGCACGTGCTGTGGACGACGGCGAGGCGGGAGTCTCCGGTGCACATGGTGCTGGAGCTCGACGTGTACGCGTGGGTGCCCGCGTCATCTTCTCCGGCTCGCCGTTGGTCGTCACTGCTGCGTGGCACAAACGTCGTCACGGCTGATGTTGACGACGCTGATTCTTATTTCTAATTATTATACTTTACTACTCGAGTTGGTTGCGCATTTGTCGCAACCGCAAC AACATTTTCCTTCAATAATAAGAAAAAGGACAAATGATTGATCGATAAAAAAAA]


>consensus_13803#1 GGCCATCATCTCCATTGCCGGCCATCTCCTTGCTCTCATCCTCGCGGTGGCGGTGCCGGC CTCGGCCGGTGGGCTCCCGGTGCGGCTGCGGTTGTACATGCACGACATCACCGGCGGGCC GGGGCAGACGGCCGTGCAGGTGGTGAACGGCACCGGGCCGCTGCACCCGGCCATGCCGCC GGGCAGCCACTTCGGCGACACCATGGTGGTGGACGACCTCCTCACCGACGTCGACGACTC CAAGCCCGTCGGCCGCGCGCAGGGCTCCTACACGCTGGCGTGCCTGCGCGCCCCCGTGTT TGTGGTCTCCATCACCCTCGTCCTCACCGACGGGCCCTACAAGGGGAGCACCATCCTCAT CGCCGGCCGCGACGACATCTCCGAGGAGGTCAGGGAGCTGGCGGTGGTGGGCGGGACGGG CAAGCTCCGGCGAGCCACCGGGCACGTGCTGTGGACGACGGCGAGGCGGGAGTCTCCGGT GCACATGGTGCTGGAGCTCGACGTGTACGCGTGGGTGCCCGCGTCATCTTCTCCGGCTCG CCGTTGGTCGTCACTGCTGCGTGGCACAAACGTCGTCACGGCTGATGTTGACGACGCTGA TTCTTATTTCTAATTACTATACTTTACTACTCGAGTTGGTTGTGCATTTGTCGCAACCGC AACAAACATTTTCCTTCAATAATAAGAAAAAGGACAAATGATTGATCGATAAAAAAAA



consensusID : consensus_13803#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 706
fasta sequence
                              [GATTAGCCTGCGGGTAGTGGCGCCG-G-CGCGGCGCGTCGGCAGGCGGTGCGGCTGCG-GGTGTACATGCACGACATCGTGGGCGGGGCGGGGCAGACGTCGGTGGTGGTGGTGAAGGGGCCGGGGCCGGCGAACCCGTCCATGTCGCCGGGGAACAACTTCGGCGACACGGTGATCATCGACGACGTGGTGACGGAGGGCCCAAGCCTGGCGTCCAGGGAGGTTGGAGCGGACG-CAGGGGACGTACATGCTGGCGTCCA-TGGCGAG-GCCGGTGTTCATCGTCGACATCACGCTGGTGCTCACCGACGGGCCATACAACGGGAGCACCATCGTCGTCGCCGGCCGCGACGACACCTCCGAGGAGGTCAGGGAGCTGGCGGTGGTCGGCGGCAGCGGGATGCTCCGGCGAGCGTCCGGG-CACGTGCTGTGGAGGACGGCCAAGGTGGAGTCCAAGCTGCACGCCGTGCTGGAGCTCGACGTGCACGCCTCGGTGCCTGCTGCTGCTGTTGCTCCCAGTGGTAGCCATGGCCATCCATTGTTGGTGACC-TCTGCCTCAGAGTAGACCACTCACAAGCTAACTAATAATGCAGCAC-AACCACCTTTAAGGTGTGCATTTATCCTTTTGT-CCTTTTTTTTTTTAAAATTATCTGCAATATCCTTTTTTTT-GGACAAT-GAATTGCACACAATAATCAACCATAGTTCATATATA]

[+] EMBL CB966080             [GATTAGCCTGCGGGTAGTGGCGCCG G CGCGGCGCGTCGGCAGGCGGTGCGGCTGCG GGTGTACATGCACGACATCGTGGGCGGGGCGGGGCAGACGTCGGTGGTGGTGGTGAAGGGGCCGGGGCCGGCGAACCCGTCCATGTCGCCGGGGAACAACTTCGGCGACACGGTGATCATCGACGACGTGGTGACGGAGGGCCCAAGCCTGGCGTCCAGGGAGGTTGGAGCGGACG CAGGGGACGTACATGCTGGCGTCCA TGGCGAG GCCGGTGTTCATCGTCGACATCACGCTGGTGCTCACCGACGGGCCATACAACGGGAGCACCATCGTCGTCGCCGGCCGCGACGACACCTCCGAGGAGGTCAGGGAGCTGGCGGTGGTCGGCGGCAGCGGGATGCTCCGGCGAGCGTCCGGG CACGTGCTGTGGAGGACGGCCAAGGTGGAGTCCAAGCTGCACGCCGTGCTGGAGCTCGACGTGCACGCCTCGGTGCCTGCTGCTGCTGTTGCTCCCAGTGGTAGCCATGGCCATCCATTGTTGGTGACC TCTGCCTCAGAGTAGACCACTCACAAGCTAACTAATAATGCAGCACAAACCACCTTTTAGGTGTGCATTTATCCTTTTGT CCTTTTTTTTTTTAAAATTATCTGCAATATCTTTTTTTTTGGGACAAT GAATTGCACACAATAATCAACCATAGTTCATATATA]
[+] EMBL CB966742             [          cggcgcGTGGCGCCG G CGCGGCGCGTCGGCAGGCGGTGCGGCTGCG GGTGTACATGCACGACATCGTGGGCGGGGCGGGGCAGACGTCGGTGGTGGTGGTGAAGGGGCCGGGGCCGGCGAACCCGTCCATGTCGCCGGGGAACAACTTCGGCGACACGGTGATCATCGACGACGTGGTGACGGAGGGCCCAAGCCTGGCGTCCACGGAGGTTGGAGCGGACG CAGGGGACGTACATGCTGGCGTCCA TGGCGAG GCCGGTGTTCATCGTCGACATCACGCTGGTGCTCACCGACGGGCCATACAACGGGAGCACCATCGTCGTCGCCGGCCGCGACGACACCTCCGAGGAGGTCAGGGAGCTGGCGGTGGTCGGCGGCAGCGGGATGCTCCGGCGAGCGTCCGGG CACGTGCTGTGGAGGACGGCCAAGGTGGAGTCCAAGCTGCACGCCGTGCTGGAGCTCGA                                                                                                                                                                                                                                             ]
[+] EMBL CB964636             [                 TGGCGCCGTG CGCGGCGCGTCGGCAGGCGGTGCGGCTGCGTGGTGTACATGCACGACATCGTGGGCGGGGCGGGGCAGACGTCGGTGGTGGTGGTGAAGGGGCCGGGGCCGGCGAACCCGTCCATGTCGCCGGGGAACAACTTCGGCGACACGGTGATCATCGACGACGTGGTGACGGAGGGCCCAAGCCTGGCGTCCAGGNAGGTTGG GCGGGCGCCAGGGGACGTACATGCTGGCGTCCA TGGCGAG GCCGGTGTTCATCGTCGACATCACGCTGGTGCTCACCGACGGGCCATACAACGGGAGCACCATCGTCGTCGCCGGCCGCGACGACACCTCCGAGGAGGTCAGGGAGCTGGCGGTGGTCGGCGGCAGCGGGATGCTCCGGCGAGCGTCCGGG CACGTGCTGTGGAGGACGGCCAAGGTGGAGTCCAAGCTGCACGCCGTGCTGGAGCTCGACGTGCACGCCTCGGTGCCTGCTGCTGCTGTTGCTCCCAGTGGTAGCCATGGCCATCCATTGTTGGTGACC TCTGCCTCAGAGTAGACCACTCACAAGCTAACTAATAATGCAGCAC AACCACCTTTAAGGTGTGCATTTATCCTTTTGT CCTTTTTTTTTCTAAAATTATCTGCAATATCCTTTTTTTT GGAC                                        ]
[+] EMBL CB964700             [                  GGCGCCG G CGCGGCGCGT GGCAGGCGGTGCGGCTGCG GGTGTACATGCACGACATCGTGGGCGGGGCGGGGCAGACGTCGGTGGTGGTGGTGAAGGGGCCGGGGCCGGCGAACCCGTCCATGTCGCCGGGGAACAACTTCGGCGACACGGTGATCATCGACGACGTGGTGACGGAGGGCCCAAGCCTGGCGTCCCGGACGGTTGG GCGGGCG CCGGGGCCGTACCTGCTGGCGTCCACTGGCGCG GCCGGTGTTCCTCGTCGCCCTCACGCTGGTGCTCACCGACGGGCCATACACCGGGAGCACCCTCGTCGTCGCCGGCCGCGACGCCACCTCCGCGGCGGTCCGGTCGCTGGCGGTGGTCGGCGGCAGCGGGATGCTCCGGCGCGCGTCCGGG CACGTGCTGTGGAGGACGGCCAAGGTGGAGTCCAAGCTGCACGCCGTGCTGGAGCTCGACGTGCACGCCTCGGAGCCTGCTGATGCTGTTGCTCCCAGTGGTAGGCATGGGCATCCATTGTTGGTGACCATCTGa                                                                                                                                                                 ]
[+] EMBL BU672976             [                     GCCG G CGCGGCGCGTCGGCAGGCGGTGCGGCTGCG GGTGTACATGCACGACATCGTGGGCGGGGCGGGGCAGACGTCGGTGGTGGTGGTGAAGGGGCCGGGGCCGGCGAACCCGTCCATGTCGCCGGGGAACAACTTCGGCGACACGGTGATCATCGACGACGTGGTGACGGAGGGCCCAAGCCTGGCGTCCAGTGAGGTTGG GCGGGCGCCAGGGGACGTACATGCTGGCGTCCA TGGCGAG GCCGGTGTTCATCGTCGACATCACGCTGGTGCTCACCGACGGGCCATACAACGGGAGCACCATCGTCGTCGCCGGCCGCGACGACACCTCCGAGGAGGTCAGGGAGCTGGCGGTGGTCGGCGGCAGCGGGATGCTCCGG GAGCGT CGGG C CGTGCTG GGAGGACGGCagt                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB966759             [                      CCG GCCGCGGCGCGTCGGCAGGCGGTGCGGCTGCG GGTGTACATGCACGACATCGTGGGCGGGGCGGGGCAGACGTCGGTGGTGGTGGTGAAGGGGCCGGGGCCGGCGAACCCGTCCATGTCGCCGGGGAACAACTTCGGCGACACGGTGATCATCGACGACGTGGTGACGGAGGGCCCAAGCCTGGCGTCCANGGAGGTTGGAGCGGACG CAGGGGACGTACATGCTGGCGTCCA TGGCGAG GCCGGTGTTCATCGTCGACATCACGCTGGTGCTCACCGACGGGCCATACAACGGGAGCACCATCGTCGTCGCCGGCCGCGACGACACCTCCGAGGAGGTCAGGGAGCTGGCGGTGGTCGGCGGCAGCGGGATGCTCCGGCGAGCGTCCGGG CACGTGCTGTGGAGGACGGCCAAGGTGGAGTCCAAGCTGCACGCCGTGCTGGAGCTCGACGTGCACGCCTCGGTGCCTGCTGCTGCTGTTGCTCCCAGTGGTAGCCATGGCCATCCATTGTTGGTGACC TCTGCCTCAGAGTAGACCACTCACAAGCTAACTAATAATGCAGCAC AACCACCTTTAAGGTGTGCATTTATCCTTTTGTCCCTTTTTTTTTTTAAAATTATCTGCAATATCCTTTTTTTT GGACAATGGAATTGCCCA                          ]
[+] EMBL CB965278             [                        G G CGCGGCGCGTCGGCAGGCGGTGCGGCTGCG GGTGTACATGCACGACATCGTGGGCGGGGCGGGGCAGACGTCGGTGGTGGTGGTGAAGGGGCCGGGGCCGGCGAACCCGTCCATGTCGCCGGGGAACAACTTCGGCGACACGGTGATCATCGACGACGTGGTGACGGAGGGCCCAAGCCTGGCGTCCAGAGAGGTTGGAGCGGACG CAGGGGACGTACATGCTGGCGTCCA TGGCGAG GCCGGTGTTCATCGTCGACATCACGCTGGTGCTCACCGACGGGCCATACAACGGGAGCACCATCGTCGTCGCCGGCCGCGACGACACCTCCGAGGAGGTCAGGGAGCTGGCGGTGGTCGGAGGCAGCGGGATGCTCCGGAGAGAGTCCGGGACACGTGCTGAGGAGGAag                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB965533             [                                                                                                                                                                                                                                                                      TGGCGAGTGCCGGTGTTCATCGTCGACATCACGCTGGTGCTCACCGACGGGCCATACAACGGGAGCACCATCGTCGTCGCCGGCCGCGACGACACCTCCGAGGAGGTCAGGGAGCTGGCGGTGGTCGGCGGCAGCGGGATGCTCCGGCGAGCGTCCGGG CACGTGCTGTGGAGGACGGCCAAGGTGGAGTCCAAGCTGCACGCCGTGCTGGAGCTCGACGTGCACGCCTCGGTGCCTGCTGC                                                                                                                                                                                                                     ]


>consensus_13803#2 GATTAGCCTGCGGGTAGTGGCGCCGGCGCGGCGCGTCGGCAGGCGGTGCGGCTGCGGGTG TACATGCACGACATCGTGGGCGGGGCGGGGCAGACGTCGGTGGTGGTGGTGAAGGGGCCG GGGCCGGCGAACCCGTCCATGTCGCCGGGGAACAACTTCGGCGACACGGTGATCATCGAC GACGTGGTGACGGAGGGCCCAAGCCTGGCGTCCAGGGAGGTTGGAGCGGACGCAGGGGAC GTACATGCTGGCGTCCATGGCGAGGCCGGTGTTCATCGTCGACATCACGCTGGTGCTCAC CGACGGGCCATACAACGGGAGCACCATCGTCGTCGCCGGCCGCGACGACACCTCCGAGGA GGTCAGGGAGCTGGCGGTGGTCGGCGGCAGCGGGATGCTCCGGCGAGCGTCCGGGCACGT GCTGTGGAGGACGGCCAAGGTGGAGTCCAAGCTGCACGCCGTGCTGGAGCTCGACGTGCA CGCCTCGGTGCCTGCTGCTGCTGTTGCTCCCAGTGGTAGCCATGGCCATCCATTGTTGGT GACCTCTGCCTCAGAGTAGACCACTCACAAGCTAACTAATAATGCAGCACAACCACCTTT AAGGTGTGCATTTATCCTTTTGTCCTTTTTTTTTTTAAAATTATCTGCAATATCCTTTTT TTTGGACAATGAATTGCACACAATAATCAACCATAGTTCATATATA



consensusID : consensus_13803#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence
                              [GGGACACTAGCTTGCGGCGCGTGGCGCCGGCCGCGGCGCGTTGGCAGGCGGTGCGGCTGCGGGTGTACATGCACGACATCTGTGGGCGGGGCTGGGGCAGACGTCTGGTGGTGGTGGTGAAGGGTGCCTGTGGGCCTGGCTGCACACCCGTCCCATGTCTGCCGTGTGTGCACACAACTTCGTGCTGCACCACGGTGCATCCATCGCACGCACGTTGTGTGCACTGTGCAGTGTGCCCCAAGCCGTGGCTGTCCCAGTGCAGTGTTTGGCAGCGGACGCCAGTGGTGCACGTACCATTGCTGGCTGTCCCATGTGCGCAGGCCTGTGTGT]

[+] EMBL CB965919             [GGGACACTAGCTTGCGGCGCGTGGCGCCGGCCGCGGCGCGTTGGCAGGCGGTGCGGCTGCGGGTGTACATGCACGACATCTGTGGGCGGGGCTGGGGCAGACGTCTGGTGGTGGTGGTGAAGGGTGCCTGTGGGCCTGGCTGCACACCCGTCCCATGTCTGCCGTGTGTGCACACAACTTCGTGCTGCACCACGGTGCATCCATCGCACGCACGTTGTGTGCACTGTGCAGTGTGCCCCAAGCCGTGGCTGTCCCAGTGCAGTGTTTGGCAGCGGACGCCAGTGGTGCACGTACCATTGCTGGCTGTCCCATGTGCGCAGGCCTGTGTGT]


>consensus_13803#3 GGGACACTAGCTTGCGGCGCGTGGCGCCGGCCGCGGCGCGTTGGCAGGCGGTGCGGCTGC GGGTGTACATGCACGACATCTGTGGGCGGGGCTGGGGCAGACGTCTGGTGGTGGTGGTGA AGGGTGCCTGTGGGCCTGGCTGCACACCCGTCCCATGTCTGCCGTGTGTGCACACAACTT CGTGCTGCACCACGGTGCATCCATCGCACGCACGTTGTGTGCACTGTGCAGTGTGCCCCA AGCCGTGGCTGTCCCAGTGCAGTGTTTGGCAGCGGACGCCAGTGGTGCACGTACCATTGC TGGCTGTCCCATGTGCGCAGGCCTGTGTGT



consensusID : consensus_13803#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 146
fasta sequence
                              [GGGAATAGCGCGGCCGCCGCTGGCGCCGGCCGCGGCGCGTCGCGCAGGCGGTGCGGCTGCGGGTGTACATGCACGACATCGTGGGCGGGGCGGGGCAGACGTCGGCTGGTGGTGGTGACAGGGGCCTGGGGCCTGGCGAACCCTGT]

[+] EMBL CB966903             [GGGAATAGCGCGGCCGCCGCTGGCGCCGGCCGCGGCGCGTCGCGCAGGCGGTGCGGCTGCGGGTGTACATGCACGACATCGTGGGCGGGGCGGGGCAGACGTCGGCTGGTGGTGGTGACAGGGGCCTGGGGCCTGGCGAACCCTGT]


>consensus_13803#4 GGGAATAGCGCGGCCGCCGCTGGCGCCGGCCGCGGCGCGTCGCGCAGGCGGTGCGGCTGC GGGTGTACATGCACGACATCGTGGGCGGGGCGGGGCAGACGTCGGCTGGTGGTGGTGACA GGGGCCTGGGGCCTGGCGAACCCTGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13803#0      TGTTTCATTTCATTTTAGTACACGCATTGGCGGCACCTGCATTCATAATTAAAAATTCGT 60
consensus_13803#2      ------------------------------------------------------------
consensus_13803#3      ------------------------------------------------------------
consensus_13803#4      ------------------------------------------------------------
consensus_13803#1      ------------------------------------------------------------
                                                                                   

consensus_13803#0      CCTTCAGCTATAGAAATATAATTGCATCTCCATTTTTCGTCTTGCGAGTGAACCAAACAT 120
consensus_13803#2      ------------------------------------------------------------
consensus_13803#3      ------------------------------------------------------------
consensus_13803#4      ------------------------------------------------------------
consensus_13803#1      ------------------------------------------------------------
                                                                                   

consensus_13803#0      AAAGATCAAATGGGTAGCTCCAGTGTTCCAGAGCACCGTCGGCAGCTTGTCGCCGCCGTG 180
consensus_13803#2      ------------------------------------------------------------
consensus_13803#3      ------------------------------------------------------------
consensus_13803#4      ------------------------------------------------------------
consensus_13803#1      -----------------------------------------GGCCATCATCTCCATTGCC 19
                                                                                   

consensus_13803#0      GCTCTCATCCTCGCCGTCGCGGCCGCCGTGGCGCCGCTGGGCGAGGCGCGTCG-GCAGGC 239
consensus_13803#2      -----------GATTAGCCTGCGGGTAGTGGCGCCG----GCGCGGCGCGTCG-GCAGGC 44
consensus_13803#3      -------GGGACACTAGCTTGCGGCGCGTGGCGCCG---GCCGCGGCGCGTTG-GCAGGC 49
consensus_13803#4      -------GGGAATAGCGCGGCCGCCGC-TGGCGCCG---GCCGCGGCGCGTCGCGCAGGC 49
consensus_13803#1      GGCCATCTCCTTGCTCTCATCCTCGCGGTGGCGGTGCCGGCCTCGGCCGGTGG-GCTCCC 78
                                        *          *****  *     *  ***  ** * **   *

consensus_13803#0      GGTGCGGCTGCGGGTGTACATGCACGACATC-GTGGGCGGGGC-GGGGCAGACGTC-GGT 296
consensus_13803#2      GGTGCGGCTGCGGGTGTACATGCACGACATC-GTGGGCGGGGC-GGGGCAGACGTC-GGT 101
consensus_13803#3      GGTGCGGCTGCGGGTGTACATGCACGACATCTGTGGGCGGGGCTGGGGCAGACGTCTGGT 109
consensus_13803#4      GGTGCGGCTGCGGGTGTACATGCACGACATC-GTGGGCGGGGC-GGGGCAGACGTCGGCT 107
consensus_13803#1      GGTGCGGCTGCGGTTGTACATGCACGACATC-ACCGGCGGGCC-GGGGCAGACGGC-CGT 135
                       ************* *****************    ****** * ********** *   *

consensus_13803#0      GGTGGTGGTGAAGGGGCCGGGGCCGGCGAACCCGTCCATGTCGCCGGGGAACAACTTCGG 356
consensus_13803#2      GGTGGTGGTGAAGGGGCCGGGGCCGGCGAACCCGTCCATGTCGCCGGGGAACAACTTCGG 161
consensus_13803#3      GGTGGTGGTGAAGG-----GTGCCTGTGGGCCTGGCTGCACACCCGTCCCATGTCTGCCG 164
consensus_13803#4      GGTGGTGGTGACAG-----GGGCCTG-GGGCCTGGC-GAAC-CCTGT------------- 146
consensus_13803#1      GCAGGTGGTGAACGGCACCGGGCCGCTGCACCCGGCCATGCCGCCGGGCAGCCACTTCGG 195
                       *  ********  *     * ***   *  ** * *       * *              

consensus_13803#0      GGACACGGTGATCATCGACGACGTGGTGACGGAGGGCCCAAGCCTGGCGTCCAGGGAGGT 416
consensus_13803#2      CGACACGGTGATCATCGACGACGTGGTGACGGAGGGCCCAAGCCTGGCGTCCAGGGAGGT 221
consensus_13803#3      TGT----GTGCACA-CAACTTCGTGCTGCACCACGGTGCATCCATCGCACGCACGTTGTG 219
consensus_13803#4      ------------------------------------------------------------
consensus_13803#1      CGACACCATGGTGGTGGACGACCTCCTCACCGACGTCGACGACTCCAAGCCC-------G 248
                                                                                   

consensus_13803#0      TGG-GCGGGCGCAGGGGACGTACATGCTGGCGTCCATGGCGAGGCCGGTGTTCATCGTCG 475
consensus_13803#2      TGGAGCGGACGCAGGGGACGTACATGCTGGCGTCCATGGCGAGGCCGGTGTTCATCGTCG 281
consensus_13803#3      TGCACTGTGCAGTGTGCCCCAAGCCGTGGCTGTCC----CAGTGCAGTGTTTGGCAGCGG 275
consensus_13803#4      ------------------------------------------------------------
consensus_13803#1      TCGGCCGCGCGCAGGGCTCCTACACGCTGGCGTGCCTGCGCGCCCCCGTGTTTGTGGTCT 308
                                                                                   

consensus_13803#0      ACATCACGGTGGTACTCACCGACGGGCCATACAACGGGAGCACCATCCTCATCGCCGGCC 535
consensus_13803#2      ACATCACGCTGGTGCTCACCGACGGGCCATACAACGGGAGCACCATCGTCGTCGCCGGCC 341
consensus_13803#3      ACGCCAGTGGTGCACGTACCATTGCTGGCTGTCCCATGTGCGCAGGCCTGTGTGT----- 330
consensus_13803#4      ------------------------------------------------------------
consensus_13803#1      CCATCACCCTCGTCCTCACCGACGGGCCCTACAAGGGGAGCACCATCCTCATCGCCGGCC 368
                                                                                   

consensus_13803#0      GCGACGACACCTCCGAGGAGGTCAGGGAGCTGGCGGTGGTCGGCGGCAGCGGGATGCTCC 595
consensus_13803#2      GCGACGACACCTCCGAGGAGGTCAGGGAGCTGGCGGTGGTCGGCGGCAGCGGGATGCTCC 401
consensus_13803#3      ------------------------------------------------------------
consensus_13803#4      ------------------------------------------------------------
consensus_13803#1      GCGACGACATCTCCGAGGAGGTCAGGGAGCTGGCGGTGGTGGGCGGGACGGGCAAGCTCC 428
                                                                                   

consensus_13803#0      GGCGAGCGTCCGGGCACGTGCTGTGGAGGACGGCCAAGGTGGAGTCCAAGCTGCACGCCG 655
consensus_13803#2      GGCGAGCGTCCGGGCACGTGCTGTGGAGGACGGCCAAGGTGGAGTCCAAGCTGCACGCCG 461
consensus_13803#3      ------------------------------------------------------------
consensus_13803#4      ------------------------------------------------------------
consensus_13803#1      GGCGAGCCACCGGGCACGTGCTGTGGACGACGGCGAGGCGGGAGTCTCCGGTGCACATGG 488
                                                                                   

consensus_13803#0      TGCTGGAGCTCGACGTGCACGCCTCGGTGCCTGCTGCTGCTGTTGCTCCTAGTGGTAGTG 715
consensus_13803#2      TGCTGGAGCTCGACGTGCACGCCTCGGTGCCTGCTGCTGCTGTTGCTCCCAGTGGTA--- 518
consensus_13803#3      ------------------------------------------------------------
consensus_13803#4      ------------------------------------------------------------
consensus_13803#1      TGCTGGAGCTCGACGTGTACGCGTGGGTGCCCGCGTCATCTTCTCCGGCTCGCCGTTG-- 546
                                                                                   

consensus_13803#0      GTAGCCATGGCCACCCATTTTTGGTGACCTCTGCCTCAGAGTAGACCACTCACAAACTA- 774
consensus_13803#2      ---GCCATGGCCATCCATTGTTGGTGACCTCTGCCTCAGAGTAGACCACTCACAAGCTAA 575
consensus_13803#3      ------------------------------------------------------------
consensus_13803#4      ------------------------------------------------------------
consensus_13803#1      GTCGTCACTGCTGCGTGGCACAAACGTCGTCACGGCTGATGTTGACGACGCTGATTCTTA 606
                                                                                   

consensus_13803#0      --------------------CCAGTTAGGTGTGCAATTATCCTTTTGTCCTTTTTTTTTC 814
consensus_13803#2      CTAATAATGCAGCACAACCACCTTTAAGGTGTGCATTTATCCTTTTGTCCTTTTTTTTTT 635
consensus_13803#3      ------------------------------------------------------------
consensus_13803#4      ------------------------------------------------------------
consensus_13803#1      TTTCTAATTACTATACTTTACTACTCGAGT---TGGTTGTGCATTTGTCGCAACCGCAAC 663
                                                                                   

consensus_13803#0      TGAAATTATCTGCAATATCTTTTTTTCTGGACAATGAATTGCACACAATAATCAAC-ATC 873
consensus_13803#2      TAAAATTATCTGCAATATCCTTTTTTTTGGACAATGAATTGCACACAATAATCAACCATA 695
consensus_13803#3      ------------------------------------------------------------
consensus_13803#4      ------------------------------------------------------------
consensus_13803#1      AAACATTTTCCTTCAATAATAAGAAAAAGGACAAATGATTGATCGATAAAAAAAA----- 718
                                                                                   

consensus_13803#0      GTTCATATATATACTGTGCCACCACGATCATCAATTTCAATTAATCA 920
consensus_13803#2      GTTCATATATA------------------------------------ 706
consensus_13803#3      -----------------------------------------------
consensus_13803#4      -----------------------------------------------
consensus_13803#1      -----------------------------------------------
                                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)