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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13808#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1396 fasta sequence
[CTTCCCGAAGCTTCGCCAATCTCCCCTCCTCTCTCTCTCTCTCTCTCCTCCCCGCGGTCGCCGACGACCTCGCCACCGACCCCGCCGCCGGACGCGAGGAAGAGACGGGGGGAGCCCCGGAGGCAGGAGCGGCGGGAGGGGATGGCGATGCAGACGGGGTTCGCCACCTCCAAGGTCCTCATCCTCGTCGGCGCAGGGTTGACGAGCTCGATCGTGCTGCGGAATGGCCGGCTATCTGACGTGTTGGCGGAGCTTCAGGAGCTTATGAAAGGTGTAAACCAAGGAGAAGGTTCGAGTGCCTATGACATCGCCCTTCTTCAATCTCAGATTCGAAATTTAGCACAAGAAGTTAGAGATTTGACTATATCAAGGCCTATTACCATATTGAGTGGCAACTCCGACTCTGGAGGCAGTTTATCCTCCTACATACTGCCTGCAGCTGCAGTTGGAGCAATGGGTTACTGCTATATGTGGTGGAAGGGATTGTCCTTATCGGATGTCATGTTTGTTACCAAACGCAACATGACCAAAGCTGTTGAGAGTATGTCGAAGCAATTGGATCAAGTGTCTTCAGCTTTAGCTGCAACAAAAAGGCATCTAAGTCAGCGCCTGGAAAATTTAGATGGGAAAATGGATGAGCAAGTGGAGGTCTCCAAAATTATTAGAAACGAGGTGAATGATGTCAAAGATGATCTGTCTCAAATTGGATTTGATATTGCAGCAATCCAACAGATGGTTGCTGGATTGGAAGGGAAGATCGAGTTGCTTGATAATAAACAGGATGCAACTAATGCTGGTGTATGGTACCTCTGCCAAATAGCTGGAGGTCTAAAAGATGGAATAAATGCCAAGTTTTTTCAGGAAGCTAATGAAAAACTCAAGCTCACAGAGTTGGCTCAGTCTGAAAGAAAGGCAGTGAAGGGGCTTGAATCTGTTCTGGAGAGCAGAAAGGAACAAAAGGCAATCGACTCCAAACAAAATACCACCGCGATAATTGACGCCGAAAAGCCCGTGAAAACGGTCGATGGGCCTGTGAAAAGCGGCGCGGTGCACAGGTGTAGCAGAATCTCATTTCGGAAGGAAGGCCTCGCTTTGTGATCAAAGCAAAGCGATCGTAACCAGCCCGCTCTCGCGATGTACATTGTCTGCCTGATTGTTTTGTTCGATTAAAAAAAATATAAAATAAAACCTGTACCTGGAGTTATTTTGAGTAGGCAGGTTGATGCACTATTCTGATTCAAAAGTGTATGTGGTTCAATCCACGTACGCTCTTTTTCTTGGATTTTGATTCATGTGATCTCATTTATTTTTATTTGGTGTGAATGTTTGTACACAGTTGGTTCGAAACATTCCTTGTGCCATTGTGAGAGTTCCCTTCGGCCTGCATGCCCTTGTC]
[+] EMBL AK061852 [CTTCCCGAAGCTTCGCCAATCTCCCCTCCTCTCTCTCTCTCTCTCTCCTCCCCGCGGTCGCCGACGACCTCGCCACCGACCCCGCCGCCGGACGCGAGGAAGAGACGGGGGGAGCCCCGGAGGCAGGAGCGGCGGGAGGGGATGGCGATGCAGACGGGGTTCGCCACCTCCAAGGTCCTCATCCTCGTCGGCGCAGGGTTGACGAGCTCGATCGTGCTGCGGAATGGCCGGCTATCTGACGTGTTGGCGGAGCTTCAGGAGCTTATGAAAGGTGTAAACCAAGGAGAAGGTTCGAGTGCCTATGACATCGCCCTTCTTCAATCTCAGATTCGAAATTTAGCACAAGAAGTTAGAGATTTGACTATATCAAGGCCTATTACCATATTGAGTGGCAACTCCGACTCTGGAGGCAGTTTATCCTCCTACATACTGCCTGCAGCTGCAGTTGGAGCAATGGGTTACTGCTATATGTGGTGGAAGGGATTGTCCTTATCGGATGTCATGTTTGTTACCAAACGCAACATGACCAAAGCTGTTGAGAGTATGTCGAAGCAATTGGATCAAGTGTCTTCAGCTTTAGCTGCAACAAAAAGGCATCTAAGTCAGCGCCTGGAAAATTTAGATGGGAAAATGGATGAGCAAGTGGAGGTCTCCAAAATTATTAGAAACGAGGTGAATGATGTCAAAGATGATCTGTCTCAAATTGGATTTGATATTGCAGCAATCCAACAGATGGTTGCTGGATTGGAAGGGAAGATCGAGTTGCTTGATAATAAACAGGATGCAACTAATGCTGGTGTATGGTACCTCTGCCAAATAGCTGGAGGTCTAAAAGATGGAATAAATGCCAAGTTTTTTCAGGAAGCTAATGAAAAACTCAAGCTCACAGAGTTGGCTCAGTCTGAAAGAAAGGCAGTGAAGGGGCTTGAATCTGTTCTGGAGAGCAGAAAGGAACAAAAGGCAATCGACTCCAAACAAAATACCACCGCGATAATTGACGCCGAAAAGCCCGTGAAAACGGTCGATGGGCCTGTGAAAAGCGGCGCGGTGCACAGGTGTAGCAGAATCTCATTTCGGAAGGAAGGCCTCGCTTTGTGATCAAAGCAAAGCGATCGTAACCAGCCCGCTCTCGCGATGTACATTGTCTGCCTGATTGTTTTGTTCGATTAAAAAAAATATAAAATAAAACCTGTACCTGGAGTTATTTTGAGTAGGCAGGTTGATGCACTATTCTGATTCAAAAGTGTATGTGGTTCAATCCACGTACGCTCTTTTTCTTGGATTTTGATTCATGTGATCTCATTTATTTTTATTTGGTGTGAATGTTTGTACACAGTTGGTTCGAAACATTCCTTGTGCCATTGTGAGAGTTCCCTTCGGCCTGCATGCCCTTGTC]
[+] EMBL CB672631 [ CTCTCTCTCTCTCCTCCCCGCGGTCGCCGACGACCTCGCCACCGACCCCGCCGCCGGACGCGAGGAAGAGACGGGGGGAGCCCCGGAGGCAGGAGCGGCGGGAGGGGATGGCGATGCAGACGGGGTTCGCCACCTCCAAGGTCCTCATCCTCGTCGGCGCAGGGTTGACGAGCTCGATCGTGCTGCGGAATGGCCGGCTATCTGACGTGTTGGCGGAGCTTCAGGAGCTTATGAAAGGTGTAAACCAAGGAGAAGGTTCGAGTGCCTATGACATCGCCCTTCTTCAATCTCAGATTCGAAATTTAGCACAAGAAGTTAGAGATTTGACTATATCAAGGCCTATTACCATATTGAGTGGCAACTCCGACTCTGGAGGCAGTTTATCCTCCTACATACTGCCTGCAGCTGCAGTTGGAGCAATGGGTTACTGCTATATGTGGTGGAAGGGATTGTCCTTATCGGATGTCATGTTTGTTACCAAACGCAACATGACCAAAGCTGTTGAGAGTATGTCGAAGCAATTGGATCAAGTGTCTTCAGCTTTAGCTGCAACAAAAAGGCATCTAAGTCAGCGCCTGGAAAATTTAGATGGGAAAATGGATGAGCAAGTGGAGGTCTCCAAAATTATTAGAAACGAGGTGAATGATGTCAAAGATGATCTGTCTCAAATTGGATTTGATATTGCAGCAATCCAACAGATGGTTGCTGGATTGGAAGGGAAGATCGAGTTGCTTGATAATAAACAGGATGC ]
[+] EMBL CB673665 [ CGACCTCCCCACCGACCCCGCCGCCGGACGCGAGGAAGAGACGGGGGGAGCCCCGGAGGCAGGAGCGGCGGGAGGGGATGGCGATGCAGACGGGGTTCGCCACCTCCAAGGTCCTCATCCTCGTCGGCGCAGGGTTGACGAGCTCGATCGTGCTGCGGAATGGCCGGCTATCTGACGTGTTGGCGGAGCTTCAGGAGCTTATGAAAGGTGTAAACCAAGGAGAAGGTTCGAGTGCCTATGACATCGCCCTTCTTCAATCTCAGATTCGAAATTTAGCACAAGAAGTTAGAGATTTGACTATATCAAGGCCTATTACCATATTGAGTGGCAACTCCGACTCTGGAGGCAGTTTATCCTCCTACATACTGCCTGCAGCTGCAGTTGGAGCAATGGGTTACTGCTATATGTGGTGGAAGGGATTGTCCTTATCGGATGTCATGTTTGTTACCAAACGCAACATGACCAAAGCTGTTGAGAGTATGTCGAAGCAATTGGATCAAGTGTCTTCAGCTTTAGCTGCAACAAAAAGGCATCTAAGTCAGCGCCTGGAAAATTTATATGGGAAAATGGATGAGCAAGTGGAGGTCTCCAAAATTATTAGAAACGAGGTGAATGATGTCAAAGATGATCTGTCTCAAATTGGATTTGATATTGCAGCAATCCAACAGATGGTTGCTGGATTGGAAGGGAAGATCGAGTTGCTTGATAATAAACAGGATGCAACTAATGCTGGTGTATGGTACCTCTGCCAAATAGCTGGACGTCTAAAAGATGGAATAAA ]
[+] EMBL CF323628 [ GTTCGCCACCTCCAAGGTCCTCATCCTCGTCGGCGCAGGGTTGACGAGCTCGATCGTGCTGCGGAATGGCCGGCTATCTGACGTGTTGGCGGAGCTTCAGGAGCTTATGAAAGGTGTAAACCAAGGAGAAGGTTCGAGTGCCTATGACATCGCCCTTCTTCAATCTCAGATTCGAAATTTAGCACAAGAAGTTAGAGATTTGACTATATCAAGGCCTATTACCATATTGAGTGGCAACTCCGACTCTGGAGGCAGTTTATCCTCCTACATACTGCCTGCAGCTGCAGTTGGAGCAATGGGTTACTGCTATATGTGGTGGAAGGGATTGTCCTTATCGGATGTCATGTTTGTTACCAAACGCAACATGACCAAAGCTGTTGAGAGTATGTCGAAGCAATTGGATCAAGTGTCTTCAGCTTTAGCTGCAACAAAAAGGCATCTAAGTCAGCGCCTGGAAAATTTAGATGGGAAAATGGATGAGCAAGTGGAGGTCTCCAAAATTATTAGAAACGAGGTGAATGATGTCAAAGATGATCTGTCTCAAATTGGATTTGATATTGCAGCAATCCAACAGATGGTTGCTGGATTGGAAGGGAAGATCGAGTTGCTTGATAATAAACAGGATGCAACTAATGCTGGTGTAT ]
[-] EMBL CB672632 [ GCAACAAAAAGGCATCTAAGTCAGCGCCTGGAAAATTTAGATGGGAAAATGGATGAGCAAGTGGAGGTCTCCAAAATTATTAGAAACGAGGTGAATGATGTCAAAGATGATCTGTCTCAAATTGGATTTGATATTGCAGCAATCCAACAGATGGTTGCTGGATTGGAAGGGAAGATCGAGTTGCTTGATAATAAACAGGATGCAACTAATGCTGGTGTATGGTACCTCTGCCAAATAGCTGGAGGTCTAAAAGATGGAATAAATGCCAAGTTTTTTCAGGAAGCTAATGAAAAACTCAAGCTCACAGAGTTGGCTCAGTCTGAAAGAAAGGCAGTGAAGGGGCTTGAATCTGTTCTGGAGAGCAGAAAGGAACAAAAGGCAATCGACTCCAAACAAAATACCACCGCGATAATTGACGCCGAAAAGCCCGTGAAAACGGTCGATGGGCCTGTGAAAAGCGGCGCGGTGCACAGGTGTAGCAGAATCTCATTTCGGAAGGAAGGCCTCGCTTTGTGATCAAAGCAAAGCGATCGTAACCAGCCCGCTCTCGCGATGTACATTGTCTGCCTGATTGTTTTGTTCGATTAAAAAAAATATAAAATAAAACCTGTACCTGGAGTTATTTTGAGTAGGCAGGTTGATGCACTATTCTGATTCAAAAGTGTATGTGGTTCAATCCACGTACGCTCTTTTTCTTGGATTTTGATTCATGTGATCTCATTTATTTTTATTTGGTGTGAATGTTTGTACACAGTTGGTTCGAAACATTCCTTGTACGATTGTGAGAGTTCCCTTCGGC ]
[+] EMBL D43398 [ ctCAACAAAAAGGCATCTAAGTCAGCGCCTGGAAAATTTAGATGGGAAAATGGATGAGCAAGTGGAGGTCTCCAAAATTATTAGAAACGAGGTGAATGATGTCAAAGATGATCTGTCTCAAATTGGATTTGATATTGCAGCAATCCAACAGATGGTTGCTGGATTGGAAGGGAAGATCGAGTTGCTTGATAATAAACAGGNTGCAACTAATGCTGGTGTATGGTACCTCTGCCAAATAGCTGGAGGTC ]
[-] EMBL CB673666 [ TGGGAAAATGGATGAGCAAGTGGAGGTCTCCAAAATTATTAGAAACGAGGTGAATGATGTCAAAGATGATCTGTCTCAAATTGGATTTGATATTGCAGCAATCCAACAGATGGTTGCTGGATTGGAAGGGAAGATCGAGTTGCTTGATAATAAACAGGATGCAACTAATGCTGGTGTATGGTACCTCTGCCAAATAGCTGGAGGTCTAAAAGATGGAATAAATGCCAAGTTTTTTCAGGAAGCTAATGAAAAACTCAAGCTCACAGAGTTGGCTCAGTCTGAAAGAAAGGCAGTGAAGGGGCTTGAATCTGTTTTGGAGAGCAGAAAGGAACAAAAGGCAATCGACTCCAAACAAAATACCCCCGCGATAATTGACGCCGAAAAGCCCGTGAAAACGGTCGATGGGCCTGTGAAAAGCGGCGCGGTGCACAGGTGTAGCAGAATCTCATTTCGGAAGGAAGGCCTCGCTTTGTGATCAAAGCAAAGCGATCGTAACCAGCCCGCTCTCGCGATGTACATTGTCTGCCTGATTGTTTTGTTCGATTAAAAAAAATATAAAATAAACCCTGTCCCTGGAGTTATTTTGAGTAGGCAGGTTGATGCACTATTTTGATTCAAAAGTGTATGTGGTTCAATCCACGTACGCTCTTTTTCTTGGATTTTGATTCATGTGATCTCATTTATTTTTATTTGGTGTGAATGTTTGTACCCAGTTGGTTGGAAACATTCCTTGTGCCATTGAGGGAGTTCCCT ]
[+] EMBL AA749723 [ GTCTCAAATTGGATTTGATATTGCAGCAATCCAACAGATGGTTGCTGGATTGGAAGGGAAGATCGAGTTGCTTGATAATAAACAGGATGCAACTAATGCTGGTGTATGGTACCTCTGCCAAATAGCTGGAGGTCTAAAAGATGGAATAAATGCCAAGTTTTTTCAGGAA ]
consensusID : consensus_13808#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence
[AACTAATGCTGGTGTATGGTACCTCTCCAATAGCTGGAGTTCTAAAAGATGGAATAAATGCCAAGTTTTTTCAGGAAGCTAATTGAAAACTCAAAGCTCACAGAGTTGGCTCAGTCTGAAAGAAAGGCAGTGAAGGGGCTTGAATCTGTTCTGGAGAGCAGAAAGGAACAAAAGGCAATCGACTCCAACAAATACCACCCGCGATAATTGACGCCGAAAAGCCCGTGAAAACGGTCGATGGGCCTGTGAAAAGCGGCGCGGTGCACAGGTGTAGCAGAATCTCATTTCGGAAGGAAGGCCTCGCTTTGTGATCAAAGCAAAGCGATCGTAACCAGCCCGCTCTCGCGATGTACATTGTCTGCCTGATTGTTTTGTTCGATTAAAAAAAATATAAAATAAAACCTGTACCTGGAGTTATTTTGAGTAGGCAGGTTGATGCACTATTCTGATTCAAAAGTGTATGTGGTTCAATCCACGTACGCTCTTTTTCTTGGATTTTGATTCATGTGATCTCATTTATTTTTATTTGGTGTGAATGTTTGTACACAGTTGGTTCGAAACATTCCTTGTGCCATTGTGAGAGTTCCCTTCGGCCTGCAAAAAAAAAAA]
[+] EMBL BQ908488 [AACTAATGCTGGTGTATGGTACCTCTCCAATAGCTGGAGTTCTAAAAGATGGAATAAATGCCAAGTTTTTTCAGGAAGCTAATTGAAAACTCAAAGCTCACAGAGTTGGCTCAGTCTGAAAGAAAGGCAGTGAAGGGGCTTGAATCTGTTCTGGAGAGCAGAAAGGAACAAAAGGCAATCGACTCCAACAAATACCACCCGCGATAATTGACGCCGAAAAGCCCGTGAAAACGGTCGATGGGCCTGTGAAAAGCGGCGCGGTGCACAGGTGTAGCAGAATCTCATTTCGGAAGGAAGGCCTCGCTTTGTGATCAAAGCAAAGCGATCGTAACCAGCCCGCTCTCGCGATGTACATTGTCTGCCTGATTGTTTTGTTCGATTAAAAAAAATATAAAATAAAACCTGTACCTGGAGTTATTTTGAGTAGGCAGGTTGATGCACTATTCTGATTCAAAAGTGTATGTGGTTCAATCCACGTACGCTCTTTTTCTTGGATTTTGATTCATGTGATCTCATTTATTTTTATTTGGTGTGAATGTTTGTACACAGTTGGTTCGAAACATTCCTTGTGCCATTGTGAGAGTTCCCTTCGGCCTGCAAAAAAAAAAA]
consensusID : consensus_13808#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence
[CGATGCAGACGGGGTTCGCCACCTCCAAGGTCCTCATCCTCGTCGGCGCAGGGTTGACGAGCTCGATCGTGCTGCGGAATGGCCGGCTATCTGACGTGTTGGCGGAGCTTCAGGAGCTTATGAAAGGTGTAAACCAAGGAGAAGGTTCGAGTGCCTATGACATCGCCCTTCTTCAATCTCAGATTCGAAATTTAGCACAAGAAGTTAGAGATTTGACTATATCAAGGCCTATTACCATATTGAGTGGCAACTCCGACTCTGGAGGCAGTTTATCCTCCTACATACTGCCTGCAGCTGCAGTTGGAGCAATGGGTTACTGCTATATGTGGTGGAAGGTAAAATCAGGAATATACAATGCCACTTTGATCTATCAGCTTTTATATTCTGATTTTTCTTCCTTGCTTTCTTTCTCCACAAACACTCCTTACTATCCTTTTCCTTTTATTATACTTACAGCCTTCAATAAATTAGTAACTGAATGAAGAGAGTAATATGATGTTCCCCATTTGCTTGTTTACCTTGTTTCTTGTAGTTATATGTCTTAAGAACTATGCTACCTAAGTCTCCCTGTAAAGTATTTCCATGCAGTCCCAGTGGTT]
[+] EMBL CF304185 [CGATGCAGACGGGGTTCGCCACCTCCAAGGTCCTCATCCTCGTCGGCGCAGGGTTGACGAGCTCGATCGTGCTGCGGAATGGCCGGCTATCTGACGTGTTGGCGGAGCTTCAGGAGCTTATGAAAGGTGTAAACCAAGGAGAAGGTTCGAGTGCCTATGACATCGCCCTTCTTCAATCTCAGATTCGAAATTTAGCACAAGAAGTTAGAGATTTGACTATATCAAGGCCTATTACCATATTGAGTGGCAACTCCGACTCTGGAGGCAGTTTATCCTCCTACATACTGCCTGCAGCTGCAGTTGGAGCAATGGGTTACTGCTATATGTGGTGGAAGGTAAAATCAGGAATATACAATGCCACTTTGATCTATCAGCTTTTATATTCTGATTTTTCTTCCTTGCTTTCTTTCTCCACAAACACTCCTTACTATCCTTTTCCTTTTATTATACTTACAGCCTTCAATAAATTAGTAACTGAATGAAGAGAGTAATATGATGTTCCCCATTTGCTTGTTTACCTTGTTTCTTGTAGTTATATGTCTTAAGAACTATGCTACCTAAGTCTCCCTGTAAAGTATTTCCATGCAGTCCCAGTGGTT]
consensusID : consensus_13808#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence
[AGGACGAGACAAGGGGGATGCAACTAATGCTGGTGTATGGTACCTCTGCCAAATAGCTGGAGGTCTAAAAGATGGAATAAATGCCAAGTTTTTTCAGGAAGCTAATGAAAAACTCAAGCTCACAGAGTTGGCTCAGTTTGAAAGAAAGGCAGTGAAGGGGCTTGAATCTGTTCTGGAGAGCAGAAAGGAACAAAAGGCAATCGACTCCAAACAAAATACCACCGCGATAATTACGCCGAAAAGCCCGTGAAAACGGTCGATGGGCCTGTGAAAAACGGCGCGGTGCACAGGTGTAGCAGAATCTCATTTTGGAAGGAAGGCCTCGCTTTGTGATCAAAGCAAAGCGATTGTAACCAGCCCGCTCTCGCGATGTACATTGTCTGCCTGATTGTTTTGTTCGATTAAAAAAAATATAAATAAAACCTGTACCTGGAGTTATTTTGAGTAGGCAGGTTGATGCACTATTTTGATTCAAAAGTGTATGTGGTTCAATCCACGTACGCTCTTTTTCTTGGATTTTGATTCATGTGATCTCATTTATTTTTATTTGGTGTGAATGTTTGTACACAGTTGGTTCGAAAAAAAAAAAAAAA]
[-] EMBL CA762516 [AGGACGAGACAAGGGGGATGCAACTAATGCTGGTGTATGGTACCTCTGCCAAATAGCTGGAGGTCTAAAAGATGGAATAAATGCCAAGTTTTTTCAGGAAGCTAATGAAAAACTCAAGCTCACAGAGTTGGCTCAGTTTGAAAGAAAGGCAGTGAAGGGGCTTGAATCTGTTCTGGAGAGCAGAAAGGAACAAAAGGCAATCGACTCCAAACAAAATACCACCGCGATAATTACGCCGAAAAGCCCGTGAAAACGGTCGATGGGCCTGTGAAAAACGGCGCGGTGCACAGGTGTAGCAGAATCTCATTTTGGAAGGAAGGCCTCGCTTTGTGATCAAAGCAAAGCGATTGTAACCAGCCCGCTCTCGCGATGTACATTGTCTGCCTGATTGTTTTGTTCGATTAAAAAAAATATAAATAAAACCTGTACCTGGAGTTATTTTGAGTAGGCAGGTTGATGCACTATTTTGATTCAAAAGTGTATGTGGTTCAATCCACGTACGCTCTTTTTCTTGGATTTTGATTCATGTGATCTCATTTATTTTTATTTGGTGTGAATGTTTGTACACAGTTGGTTCGAAAAAAAAAAAAAAA]
consensusID : consensus_13808#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 487 fasta sequence
[CACAGAGTTGGCTCAGTCTGAAAGAAAGGCAGTGAAGGGGCTTGAATCTGTTCTGGAGAGCA-GAAAGGAACA-AAGGC-CATCGACTCCCACCAAATACCCCCGCGATAATTGACGCCG-AAAAGCCCGTGAAAACGGTCGATGGGCCTGTGAAAAGCGGCGCGGTGCACACGGTGTAGCAGAATCTCATTTCGGAAGGAAGGCCTCGCTTTGTGATCAAA-GCAAGCGATCGT-AACCAGCCCGCTCTCGCGATGTACATTGTCTGCCTGATTGTTTTGTTCGATTAAAAAAAATATAAAATAAAACCTGTACCTGGAGTTATTTTGAGTAGGCACGGTTGATGCACTATTCTGATTCAAAAGTGTATGTGGTTCAATCCACGTACGCTCTTTTTCTTGGATTTTGATTCATGTGATCTCATTTATTTTTATTTGGTGTGAATGTTTGTACACCCGTTGGTTCGAAACATT-CCTTGTGCCCAAAAAAAAAA]
[+] EMBL BI812210 [CACAGAGTTGGCTCAGTCTGAAAGAAAGGCAGTGAAGGGGCTTGAATCTGTTCTGGAGAGCA GAAAGGAACA AAGGC CATCGACTCCCACCAAATACCCCCGCGATAATTGACGCCG AAAAGCCCGTGAAAACGGTCGATGGGCCTGTGAAAAGCGGCGCGGTGCACACGGTGTAGCAGAATCTCATTTCGGAAGGAAGGCCTCGCTTTGTGATCAAA GCAAGCGATCGT AACCAGCCCGCTCTCGCGATGTACATTGTCTGCCTGATTGTTTTGTTCGATTAAAAAAAATATAAAATAAAACCTGTACCTGGAGTTATTTTGAGTAGGCACGGTTGATGCACTATTCTGATTCAAAAGTGTATGTGGTTCAATCCACGTACGCTCTTTTTCTTGGATTTTGATTCATGTGATCTCATTTATTTTTATTTGGTGTGAATGTTTGTACACCCGTTGGTTCGAAACATT CCTTGTGCCCAAAAAAAAAA]
[+] EMBL BI813142 [ AAGAAAGCCATTGAAGGGGCTTGAATCTGTTCTGGAGACCACGAAAGGAACACAAAGCACATCGACTCC CTGATGACCCCCGCGATAATTGACGCCGAAAAAGCCCGTGAAAACGGTCGATGGGCCTGTGAAAAGCGGCGCGGTGCACA GGTGTA CAGAATCTCATTTCGGAAGGAAGGCCTCGCTTTGTGATCAAACACAAGCGATCGTAAACCAGCCCGCTCTCGCGATGTACATTGTCTGCCTGATTGTTTTGTTCGATTAAAAAAAATATAAAATAAAACCTGTACCTGGAGTTATTTTGAGTAGGCACGGTTGATGCACTATTCTGATTCAAAAGTGTATGTGGTTCAATCCACGTACGCTCTTTTTCTTGGATTTTGATTCATGTGATCTCATTTATTTTTATTTGGTGTGAATGTTTGTAC CCCGTTGGTTCGAAACCTTCCCTTGTGCCCAAAAAAAAAA]
consensusID : consensus_13808#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence
[TTGGGCGGGGGATTAAATTGCTTTCTTAGTCATGTAATAACACCTCTCTGATTCTGTGACCAATATTCTATCAAGAATCACAGTTTCGGGTTGAGAGACTCTTTTCATGATCCCTAGGCCCTAGTATTTAAGTAAAACCATCAAATCTGTCTTGTCCTAATGCTGTTGTAGACTAAATTACTAGTACAATGATGAACTGTATGTGTTAAACTTTTCTTACATTATAGTATCTTCCTGCAGGGATTGTCCTTATCGGATGTCATGTTTGTTACCAAACGCAACATGACCAAAACTGTTGAGAGTAT]
[+] EMBL AU078000 [TTGGGCGGGGGATTAAATTGCTTTCTTAGTCATGTAATAACACCTCTCTGATTCTGTGACCAATATTCTATCAAGAATCACAGTTTCGGGTTGAGAGACTCTTTTCATGATCCCTAGGCCCTAGTATTTAAGTAAAACCATCAAATCTGTCTTGTCCTAATGCTGTTGTAGACTAAATTACTAGTACAATGATGAACTGTATGTGTTAAACTTTTCTTACATTATAGTATCTTCCTGCAGGGATTGTCCTTATCGGATGTCATGTTTGTTACCAAACGCAACATGACCAAAACTGTTGAGAGTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13808#1 ------------------------------------------------------------
consensus_13808#4 ------------------------------------------------------------
consensus_13808#3 ------------------------------------------------------------
consensus_13808#0 CTTCCCGAAGCTTCGCCAATCTCCCCTCCTCTCTCTCTCTCTCTCTCCTCCCCGCGGTCG 60
consensus_13808#2 ------------------------------------------------------------
consensus_13808#5 ------------------------------------------------------------
consensus_13808#1 ------------------------------------------------------------
consensus_13808#4 ------------------------------------------------------------
consensus_13808#3 ------------------------------------------------------------
consensus_13808#0 CCGACGACCTCGCCACCGACCCCGCCGCCGGACGCGAGGAAGAGACGGGGGGAGCCCCGG 120
consensus_13808#2 ------------------------------------------------------------
consensus_13808#5 ------------------------------------------------------------
consensus_13808#1 ------------------------------------------------------------
consensus_13808#4 ------------------------------------------------------------
consensus_13808#3 ------------------------------------------------------------
consensus_13808#0 AGGCAGGAGCGGCGGGAGGGGATGGCGATGCAGACGGGGTTCGCCACCTCCAAGGTCCTC 180
consensus_13808#2 ------------------------------------------------------------
consensus_13808#5 ------------------------------------------------------------
consensus_13808#1 ------------------------------------------------------------
consensus_13808#4 ------------------------------------------------------------
consensus_13808#3 ------------------------------------------------------------
consensus_13808#0 ATCCTCGTCGGCGCAGGGTTGACGAGCTCGATCGTGCTGCGGAATGGCCGGCTATCTGAC 240
consensus_13808#2 ------------------------------------------------------------
consensus_13808#5 ------------------------------------------------------------
consensus_13808#1 ------------------------------------------------------------
consensus_13808#4 ------------------------------------------------------------
consensus_13808#3 ------------------------------------------------------------
consensus_13808#0 GTGTTGGCGGAGCTTCAGGAGCTTATGAAAGGTGTAAACCAAGGAGAAGGTTCGAGTGCC 300
consensus_13808#2 ------------------------------------------------------------
consensus_13808#5 ------------------------------------------------------------
consensus_13808#1 ------------------------------------------------------------
consensus_13808#4 ------------------------------------------------------------
consensus_13808#3 ------------------------------------------------------------
consensus_13808#0 TATGACATCGCCCTTCTTCAATCTCAGATTCGAAATTTAGCACAAGAAGTTAGAGATTTG 360
consensus_13808#2 ------------------------------------------------------------
consensus_13808#5 ------------------------------------------------------------
consensus_13808#1 ------------------------------------------------------------
consensus_13808#4 ------------------------------------------------------------
consensus_13808#3 ------------------------------------------------------------
consensus_13808#0 ACTATATCAAGGCCTATTACCATATTGAGTGGCAACTCCGACTCTGGAGGCAGTTTATCC 420
consensus_13808#2 ------------------------------------------------------------
consensus_13808#5 ------------------------------------------------------------
consensus_13808#1 ------------------------------------------------------------
consensus_13808#4 ------------------------------------------------------------
consensus_13808#3 ------------------------------------------------------------
consensus_13808#0 TCCTACATACTGCCTGCAGCTGCAGTTGGAGCAATGGGTTACTGCTATATGTGGTGGAAG 480
consensus_13808#2 ------------------------------------------------------------
consensus_13808#5 ------------------------------------------------------------
consensus_13808#1 ------------------------------------------------------------
consensus_13808#4 ------------------------------------------------------------
consensus_13808#3 ------------------------------------------------------------
consensus_13808#0 GGATTGTCCTTATCGGATGTCATGTTTGTTACCAAACGCAACATGACCAAAGCTGTTGAG 540
consensus_13808#2 ------------------------------------------------------------
consensus_13808#5 ------------------------------------------------------------
consensus_13808#1 ------------------------------------------------------------
consensus_13808#4 ------------------------------------------------------------
consensus_13808#3 ------------------------------------------------------------
consensus_13808#0 AGTATGTCGAAGCAATTGGATCAAGTGTCTTCAGCTTTAGCTGCAACAAAAAGGCATCTA 600
consensus_13808#2 ------------------------------------------------------------
consensus_13808#5 ------------------------------------------------------------
consensus_13808#1 ------------------------------------------------------------
consensus_13808#4 ------------------------------------------------------------
consensus_13808#3 ------------------------------------------------------------
consensus_13808#0 AGTCAGCGCCTGGAAAATTTAGATGGGAAAATGGATGAGCAAGTGGAGGTCTCCAAAATT 660
consensus_13808#2 ------------------------------------------------------------
consensus_13808#5 ------------------------------------------------------------
consensus_13808#1 ------------------------------------------------------------
consensus_13808#4 ------------------------------------------------------------
consensus_13808#3 ------------------------------------------------------------
consensus_13808#0 ATTAGAAACGAGGTGAATGATGTCAAAGATGATCTGTCTCAAATTGGATTTGATATTGCA 720
consensus_13808#2 ------------------------------------------------------------
consensus_13808#5 ------------------------------------------------------------
consensus_13808#1 ------------------------------------------------------------
consensus_13808#4 ------------------------------------------------------------
consensus_13808#3 --------------------------------------------AGGACGAGACAAGGGG 16
consensus_13808#0 GCAATCCAACAGATGGTTGCTGGATTGGAAGGGAAGATCGAGTTGCTTGATAATAAACAG 780
consensus_13808#2 ------------------------------------------------CGATGCAGACGG 12
consensus_13808#5 ------------------------------------------------------------
consensus_13808#1 -----AACTAATGCTGGTGTATGGTACCTCT-CC--AATAGCTGGAGTTCTAAAAGATGG 52
consensus_13808#4 ------------------------------------------------------------
consensus_13808#3 GATGCAACTAATGCTGGTGTATGGTACCTCT-GCCAAATAGCTGGAGGTCTAAAAGATGG 75
consensus_13808#0 GATGCAACTAATGCTGGTGTATGGTACCTCT-GCCAAATAGCTGGAGGTCTAAAAGATGG 839
consensus_13808#2 GGTTCGCCACCTCCAAGGTCCTCATCCTCGTCGGCGCAGGGTTGACGAGCTCGATCGTGC 72
consensus_13808#5 ------------------------------------------------------------
consensus_13808#1 AATAAATGCCAAGTTTTTTCAGGAAGCTAATTGAAAACTCAAAGCTCACAGAGTTGGCTC 112
consensus_13808#4 ----------------------------------------------CACAGAGTTGGCTC 14
consensus_13808#3 AATAAATGCCAAGTTTTTTCAGGAAGCTAATGAAAAACTCAA-GCTCACAGAGTTGGCTC 134
consensus_13808#0 AATAAATGCCAAGTTTTTTCAGGAAGCTAATGAAAAACTCAA-GCTCACAGAGTTGGCTC 898
consensus_13808#2 TGCGGAATGGCCGGCTATCTGACGTGTTGGCGGAGCTTCAGGAGCTTATGAAA--GGTGT 130
consensus_13808#5 ------------------------------------------------------------
consensus_13808#1 AGTCTGAAAGAAAGGC---AGTGAAGG-GGCTTGAATCTGTTCTGG----AGAGCAGAAA 164
consensus_13808#4 AGTCTGAAAGAAAGGC---AGTGAAGG-GGCTTGAATCTGTTCTGG----AGAGCAGAAA 66
consensus_13808#3 AGTTTGAAAGAAAGGC---AGTGAAGG-GGCTTGAATCTGTTCTGG----AGAGCAGAAA 186
consensus_13808#0 AGTCTGAAAGAAAGGC---AGTGAAGG-GGCTTGAATCTGTTCTGG----AGAGCAGAAA 950
consensus_13808#2 AAACCAAGGAGAAGGTTCGAGTGCCTATGACATCGCCCTTCTTCAATCTCAGATTCGAAA 190
consensus_13808#5 ------------------------------------------------------------
consensus_13808#1 ---GGAACAAAAGGCAATCGACTC--CAA-C-AAATACCACCCGCGATAATTGACGCCGA 217
consensus_13808#4 ---GGAACAAA-GGCCATCGACTC--CCA-CCAAATACC-CCCGCGATAATTGACGCCGA 118
consensus_13808#3 ---GGAACAAAAGGCAATCGACTC--CAAACAAAATACC-ACCGCGATAATT-ACGCCGA 239
consensus_13808#0 ---GGAACAAAAGGCAATCGACTC--CAAACAAAATACC-ACCGCGATAATTGACGCCGA 1004
consensus_13808#2 TTTAGCACAAGAAGTTAGAGATTTGACTATATCAAGGCCTATTACCATATTGAGTGGCAA 250
consensus_13808#5 ------------------------------------------------------------
consensus_13808#1 AAA-GCCCGTGAAAACGGTCGATGGGCCTGTGAAAAGCGGCGCGGTGCACA-GGTGTAGC 275
consensus_13808#4 AAA-GCCCGTGAAAACGGTCGATGGGCCTGTGAAAAGCGGCGCGGTGCACACGGTGTAGC 177
consensus_13808#3 AAA-GCCCGTGAAAACGGTCGATGGGCCTGTGAAAAACGGCGCGGTGCACA-GGTGTAGC 297
consensus_13808#0 AAA-GCCCGTGAAAACGGTCGATGGGCCTGTGAAAAGCGGCGCGGTGCACA-GGTGTAGC 1062
consensus_13808#2 CTCCGACTCTGGAGGCAGTTTATCCTCCTACATACTGCCTGCAGCTGCAGTTGGAGCAAT 310
consensus_13808#5 ------TTGGGCGGGGGATTAAATTGCTTTCTTAGT-CATGTAATAACACCTCTCTGATT 53
* * * * * * * ** *
consensus_13808#1 AGAATCTCATT-TCGGAAGGAAGGCCTCGCTTTGTGATCAAAGCAAAGCGATCGTAACCA 334
consensus_13808#4 AGAATCTCATT-TCGGAAGGAAGGCCTCGCTTTGTGATCAAAGCAA-GCGATCGTAACCA 235
consensus_13808#3 AGAATCTCATT-TTGGAAGGAAGGCCTCGCTTTGTGATCAAAGCAAAGCGATTGTAACCA 356
consensus_13808#0 AGAATCTCATT-TCGGAAGGAAGGCCTCGCTTTGTGATCAAAGCAAAGCGATCGTAACCA 1121
consensus_13808#2 GGGTTACTGCT-ATATGTGGTGGAAGGTAAAATCAGGAATATACAATGCCACTTTGATCT 369
consensus_13808#5 CTGTGACCAATATTCTATCAAGAATCACAGTTTCGGGTTGAGAGACTCTTTTCATGATCC 113
* * * * * * * *
consensus_13808#1 GCCCGCTCTCGCGATGTACATTGTCTGCCTGATTGTTTTGTTCGATTAAAAAAAATATAA 394
consensus_13808#4 GCCCGCTCTCGCGATGTACATTGTCTGCCTGATTGTTTTGTTCGATTAAAAAAAATATAA 295
consensus_13808#3 GCCCGCTCTCGCGATGTACATTGTCTGCCTGATTGTTTTGTTCGATTAAAAAAAATATAA 416
consensus_13808#0 GCCCGCTCTCGCGATGTACATTGTCTGCCTGATTGTTTTGTTCGATTAAAAAAAATATAA 1181
consensus_13808#2 ATCAGCTTTTATATTCTGATTTTTCTTCC---TTGCTTTCTTTCTCCACAAACACTCCTT 426
consensus_13808#5 CTAGGCCCTAGTATTTAAGTAAAACCATCAAAT--CTGTCTTGTCCTAATGCTGTTGTAG 171
** * * * * * * * ** * *
consensus_13808#1 AATAAAACCTGTACCTGGAGTTATTTTGAGTAGGCA-GGTTGATGCACTATT--CTGATT 451
consensus_13808#4 AATAAAACCTGTACCTGGAGTTATTTTGAGTAGGCACGGTTGATGCACTATT--CTGATT 353
consensus_13808#3 A-TAAAACCTGTACCTGGAGTTATTTTGAGTAGGCA-GGTTGATGCACTATT--TTGATT 472
consensus_13808#0 AATAAAACCTGTACCTGGAGTTATTTTGAGTAGGCA-GGTTGATGCACTATT--CTGATT 1238
consensus_13808#2 ACTAT--CCTTTTCCTTTTATTATACTTA-CAGCCT---TCAATAAATTAGTAACTGAAT 480
consensus_13808#5 ACTAA-----ATTACTAGTACAATGATGAACTGTAT---GTGTTAAACTTTT--CTTACA 221
* ** * ** ** * * * * * * * * *
consensus_13808#1 CAAAAGTGTA-TGTGGTTCAATCCACGTACGCTCTTTTTCTTGGATTTTGATTCATGTGA 510
consensus_13808#4 CAAAAGTGTA-TGTGGTTCAATCCACGTACGCTCTTTTTCTTGGATTTTGATTCATGTGA 412
consensus_13808#3 CAAAAGTGTA-TGTGGTTCAATCCACGTACGCTCTTTTTCTTGGATTTTGATTCATGTGA 531
consensus_13808#0 CAAAAGTGTA-TGTGGTTCAATCCACGTACGCTCTTTTTCTTGGATTTTGATTCATGTGA 1297
consensus_13808#2 GAAGAGAGTAATATGATGT--TCCCCATTTGCTTGTTTACCTTGTTTCTTGTAGTTAT-A 537
consensus_13808#5 TTATAGTATCTTCCTGCAGGGATTGTCCTTATCGGATGTCATGTTTGTTACCAAACGCAA 281
* ** * * * * * * * *
consensus_13808#1 TCTCATTTATTTTTATTTGGTGTGAATGTTTGTACACA-GTTGGTTCGAAACATTCCTTG 569
consensus_13808#4 TCTCATTTATTTTTATTTGGTGTGAATGTTTGTACACCCGTTGGTTCGAAACATTCCTTG 472
consensus_13808#3 TCTCATTTATTTTTATTTGGTGTGAATGTTTGTACACA-GTTGGTTCGAAAAA------- 583
consensus_13808#0 TCTCATTTATTTTTATTTGGTGTGAATGTTTGTACACA-GTTGGTTCGAAACATTCCTTG 1356
consensus_13808#2 TGTC-TTAAGAACTATGCTACCTAAGTCTCCCTGTAAA--GTATTTCCATGCAGTCCCAG 594
consensus_13808#5 CATGACCAA-AACTGTTGAGAGTAT----------------------------------- 305
* * * * *
consensus_13808#1 TGCCATTGTGAGAGTTCCCTTCGGCCTGCAAAAAAAAAAA 609
consensus_13808#4 TGCCCAAAAAAAAAA------------------------- 487
consensus_13808#3 ----AAAAAAAAAA-------------------------- 593
consensus_13808#0 TGCCATTGTGAGAGTTCCCTTCGGCCTGCATGCCCTTGTC 1396
consensus_13808#2 TGGTT----------------------------------- 599
consensus_13808#5 ----------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||