These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13815#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1645 fasta sequence [CTTTCCCCTCCAAATAAGCTCGTCCAGTCCAAGCACACAAGCCATTCCACCGCTCGCCGTCGCTGTCTCCCATCCCATCCCATGCATCACTAGCGGATTTGTGGAGTGGTTGCGCCCCCTGCGAGCGAGCTCTGTTCGTACCGCGCGCTCCGGTGCGGAGTGGTTGCTGGCCGGCGAGGCGGGCGGACGGACGCGTCGATGCGCGTGGCAGTAGCTGCGTGCGGGTGACGAAGCAGGGGCACTTGCTATATCCGTCGCCTCTTGGCGGATGTGCGGGATTCTGCGCGCAGTACGCGGCGGCCATGGACGCGTCCTCGCCCTTCAGCTTCCACGAGCTCAGGCGGCAGGCCTCGTCCTACCTCACCGACAAGATCCGCTCCGCGCGGCTCGCGCTCACCGATGTTACCCCGACGCAGCTGATGACGGAGGAGGCGACGAGCGGGGACGCATCGCCGCCGAACGTGAAGACGATGAGCCTCATCGCGCGGCAGGCGTTCGAGATCGACGAGTACGTCAGGATCTCCGACATCCTCCACAAGAGGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCTCGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGTGCGCGCAAGATAGCGCACGAGATCAAGGGATTCGGCAGCTTCAACCTCAGCAGCGCGCATGCGTCGGGGTCGGCGGCGGCAGCCCTCCGCGCGGGGGCGATGGAGCACCAGTGCTACGGCCGGAGCAACTCGCGGTACGAGGGCAGGTGGAGGAGGGAGGCCTGCGTGGACGACGGCGACAAGGAGAACCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGAGCCGCACCACTACCACCACCCGTTCTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCTGCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGG-TTCTTCGTCGATCGCATCGTTCGTTGGTTTGTGATGCGTGAGAAAAAATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGTGATGACCCTTTTGTAATCGTCGTCCTTAATTTCAGTTCTGATTTCTGAAACTCTAA-AAATGCCTGATTCCCTG-AGCTCATAAACACACGAAGAAAGGAAATTTTGAGAAGTTGGAAGCTTCAAGCTGGCAATTNCAGGCAAATACACCTGACATGAATCCGGACAGGTACAAGGATCGTGAAAAGACATGCGAATGGATGAACCGATGCAGTGAAATTCTCTCTGCTATACTCCAGAGTCCAGAATGTGATATGCTGAACTGATCAGAANCAGACCTAGGCCTGGTTTAGGTCGTGTTTGGGAAAAGTTTGGGAAGAAGTTGATAGTTTGGAAAAAAAAAGTTAGGAGTTATATGTGCGTAGGAAAGTTTTGGATGTGATGTGATGTAATGGAAAGTTGGGATTTGGNGGGAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK103342 [CTTTCCCCTCCAAATAAGCTCGTCCAGTCCAAGCACACAAGCCATTCCACCGCTCGCCGTCGCTGTCTCCCATCCCATCCCATGCATCACTAGCGGATTTGTGGAGTGGTTGCGCCCCCTGCGAGCGAGCTCTGTTCGTACCGCGCGCTCCGGTGCGGAGTGGTTGCTGGCCGGCGAGGCGGGCGGACGGACGCGTCGATGCGCGTGGCAGTAGCTGCGTGCGGGTGACGAAGCAGGGGCACTTGCTATATCCGTCGCCTCTTGGCGGATGTGCGGGATTCTGCGCGCAGTACGCGGCGGCCATGGACGCGTCCTCGCCCTTCAGCTTCCACGAGCTCAGGCGGCAGGCCTCGTCCTACCTCACCGACAAGATCCGCTCCGCGCGGCTCGCGCTCACCGATGTTACCCCGACGCAGCTGATGACGGAGGAGGCGACGAGCGGGGACGCATCGCCGCCGAACGTGAAGACGATGAGCCTCATCGCGCGGCAGGCGTTCGAGATCGACGAGTACGTCAGGATCTCCGACATCCTCCACAAGAGGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCTCGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGTGTGAGCGTGCGCGCAAGATAGCGCACGAGATCAAGGGATTCGGCAGCTTCAACCTCAGCAGCGCGCATGCGTCGGGGTCGGCGGCGGCAGCCCTCCGCGCGGGGGCGATGGAGCACCAGTGCTACGGCCGGAGCAACTCGCGGTACGAGGGCAGGTGGAGGAGGGAGGCCTGCGTGGACGACGGCGACAAGGAGAACCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGAGCCGCACCACTACCACCACCCGTTCTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCTGCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGG TTCTTCGTCGATCGCATCGTTCGTTGGTTTGTGATGCGTGAGAAAAAATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGTGATGACCCTTTTGTAGTCGTCGTCCTTAATTTCAGTTC ] [+] EMBL AK059601 [ CTCGCCGTCGCTGTCTCCCATCCCATCCCATGCATCACTAGCGGATTTGTGGAGTGGTTGCGCCCCCTGCGAGCGAGCTCTGTTCGTACCGCGCGCTCCGGTGCGGAGTGGTTGCTGGCCGGCGAGGCGGGCGGACGGACGCGTCGATGCGCGTGGCAGTAGCTGCGTGCGGGTGACGAAGCAGGGGCACTTGCTATATCCGTCGCCTCTTGGCGGATGTGCGGGATTCTGCGCGCAGTACGCGGCGGCCATGGACGCGTCCTCGCCCTTCAGCTTCCACGAGCTCAGGCGGCAGGCCTCGTCCTACCTCACCGACAAGATCCGCTCCGCGCGGCTCGCGCTCACCGATGTTACCCCGACGCAGCTGATGACGGAGGAGGCGACGAGCGGGGACGCATCGCCGCCGAACGTGAAGACGATGAGCCTCATCGCGCGGCAGGCGTTCGAGATCGACGAGTACGTCAGGATCTCCGACATCCTCCACAAGAGGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCTCGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGTGCGCGCAAGATAGCGCACGAGATCAAGGGATTCGGCAGCTTCAACCTCAGCAGCGCGCATGCGTCGGGGTCGGCGGCGGCAGCCCTCCGCGCGGGGGCGATGGAGCACCAGTGCTACGGCCGGAGCAACTCGCGGTACGAGGGCAGGTGGAGGAGGGAGGCCTGCGTGGACGACGGCGACAAGGAGAACCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGAGCCGCACCACTACCACCACCCGTTCTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCTGCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGG TTCTTCGTCGATCGCATCGTTCGTTGGTTTGTGATGCGTGAGAAAAAATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGTAATGACCCTTTTGTAATCGTCGTCCTTAATTTCAGTTCTGATTTCTGAAACTCTAA AAATGCCTGATTCCCTG AGCTCATAAACACACGAAGAAAGG ] [+] EMBL C91759 [ TGTCTCCCATCCCATCCCATGCATCACTAGCGGATTTGTGGAGTGGTTGCGCCCCCTGCGAGCGAGCTCTGTTCGTACCGCGCGCTCCGGTGCGGAGTGGTTGCTGGCCGGCGAGGCGGGCGGACGGACGCGTCGATGCGCGTGGCAGTAGCTGCGTGCGGGTGACGAAGCAGGGGCACTTGCTATATCCGTCGCCTCTTGGCGGATGTGCGGGATTCTGCGCGCAGTACGCGGCGGCCATGGACGCGTCCTCG CCTTCAGCTTCCACGAGCTCAGGCGGCAGGCCTCGTCCTACCTCANCG ] [+] EMBL CB666531 [ CATCCCATGCATCACTAGCGGATTTGTGGAGTGGTTGCGCCCCCTGCGAGCGAGCTCTGTTCGTACCGCGCGCTCCGGTGCGGAGTGGTTGCTGGCCGGCGAGGCGGGCGGACGGACGCGTCGATGCGCGTGGCAGTAGCTGCGTGCGGGTGACGAAGCAGGGGCACTTGCTATATCCGTCGCCTCTTGGCGGATGTGCGGGATTCTGCGCGCAGTACGCGGCGGCCATGGACGCGTCCTCGCCCTTCAGCTTCCACGAGCTCAGGCGGCAGGCCTCGTCCTACCTCACCGACAAGATCCGCTCCGCGCGGCTCGCGCTCACCGATGTTACCCCGACGCAGCTGATGACGGAGGAGGCGACGAGCGGGGACGCATCGCCGCCGAACGTGAAGACGATGAGCCTCATCGCGCGGCAGGCGTTCGAGATCGACGAGTACGTCAGGATCTCCGACATCCTCCACAAGAGGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCTCGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGTGCGCGCAAGATAGCGCACGAGATCAAGGGATTCGGCAGCTTCAACCTCAGCAGCGCGCATGCGTCGGGGTCGGCGGCGGCA ] [+] EMBL CB668403 [ CATCCCATGCATCACTAGCGGATTTGTGGAGTGGTTGCGCCCCCTGCGAGCGAGCTCTGTTCGTACCGCGCGCTCCGGTGCGGAGTGGTTGCTGGCCGGCGAGGCGGGCGGACGGACGCGTCGATGCGCGTGGCAGTAGCTGCGTGCGGGTGACGAAGCAGGGGCACTTGCTATATCCGTCGCCTCTTGGCGGATGTGCGGGATTCTGCGCGCAGTACGCGGCGGCCATGGACGCGTCCTCGCCCTTCAGCTTCCACGAGCTCAGGCGGCAGGCCTCGTCCTACCTCACCGACAAGATCCGCTCCGCGCGGCTCGCGCTCACCGATGTTACCCCGACGCAGCTGATGACGGAGGAGGCGACGAGCGGGGACGCATCGCCGCCGAACGTGAAGACGATGAGCCTCATCGCGCGGCAGGCGTTCGAGATCGACGAGTACGTCAGGATCTCCGACATCCTCCACAAGAGGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCTCGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGTGCGCGCAAGATAGCGCACGAGATCAAGGGATTCGGCAGCTTCAACCTCAGCAGCGCGCATGCGTCGGGGTCGGCGGCGGCA ] [-] EMBL CB668404 [ ACAAGAGGTTCGCGAGGTTCGCCAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCTCGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGTGCGCGCAAGATAGCGCACGAGATCAAGGGATTCGGCAGCTTCAACCTCAGCAGCGCGCATGCGTCGGGGTCGGCGGCGGCAGCCCTCCGCGCGGGGGCGATGGAGCACCAGTGCTACGGCCGGAGCAACTCGCGGTACGAGGGCAGGTGGAGGAGGGAGGCCTGCGTGGACGACGGCGACAAGGAGAACCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGAGCCGCACCACTACCACCACCCGTTTTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCTGCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGG TTCTTCGTCGATCGCATCGTTCGTTGGTTTGTGATGCGTGAGAAAAAATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGTGATGACCCTTTTGGAATCGTCGTCCTTAATTTCAGTTCTGATTTCT ] [-] EMBL CB666532 [ CCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATGGGCGAGAAAGGTTTCAACTGGGGGATGCCGGTGAAGAGCAAGTCGGAGCGCGTGATGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGTGCGCGCAAGATAGCGCACGAGATCAAGGGATTGGGCAGCTTCAACCTCAGCAGCGCGCATGCGTCGGGGTCGGCGGCGGCAGCCCTCCGCGCGGGGGCGATGGAGCACCAGTGCTACGGCCGGAGCAACTCGCGGTACGAGGGCAGGTGGAGGAGGGAGGCCTGCGTGGACGACGGCGACAAGGAGAACCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGAGCCGCACCACTACCACCACCCGTTTTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCTGCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGG TTCTTCGTCGATCGCATCGTTCGTTGGTTTGTGATGCGTGAGAAAAAATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGTGATGACCCTTTTGTAATCGTCGTCCTTAATTTCAGTTC ] [+] EMBL AU173074 [ AGGATGAGCGTGAGCGTGCGCGCAAGATAGCGCACGAGATCAAGGGATTCGGCAGCTTCAACCTCAGCAGCGCGCATGCGTCGGGGTCGGCGGCGGCAGCCCTCCGCGCGGGGGCGATGGAGCACCAGTGCTACGGCCGGAGCAACTCGCGGTACGAGGGCAGGTGGAGGAGGGAGGCCTGCGTGGACGACGGCGACAAGGAGAACCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGAGCCGCACCACTACCACCACCCGTTCTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCTGCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGGTTTCTTCGTCNATCGCATCGTTCGTNGGTTTGTGATGCGNGAGAAAAAATNCT ] [+] EMBL AU173075 [ GCGCATGCGTCGGGGTCGGCGGCGGCAGCCCTCCGCGCGGGGGCGATGGAGCACCAGTGCTACGGCCGGAGCAACTCGCGGTACGAGGGCAGGTGGAGGAGGGAGGCCTGCGTGGACGACGGCGACAAGGAGAACCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGANCCGCACCACTACCACCACCCGTTNTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCTGCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGG TTCTTCGTCGATCGCATCGTTCGTTGGTTTGTGATGCGTGAGAAAAAATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGTGATGACCCTTTTGTAATCGTCGTCCTTAATTTCAGTTCTGATTTCTGAAAaaaaaaa ] [+] EMBL AU029770 [ ATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGTGATGACCCTTTTGTAATCGTCGTCCTTAATTTCAGTTCTGATTTCTGAAACTCTAACAAATGCNTGANTCCCTGAAGCTCATAAACACACGNAGAAAGGAAATTTTGAGAAGTTGGAAGCTTCAAGCTGGCAATTNCAGGCAAATACACCTGACATGAATCCGGACAGGTACAAGGATCGTGAAAAGACATGCGAATGGATGAACCGATGCAGTGAAATTCTCTCTGCTATACTCCAGAGTCCAGAATGTGATATGCTGAACTGATCAGAANCAGACCTAGGCCTGGTTTAGGTCGTGTTTGGGAAAAGTTTGGGAAGAAGTTGATAGTTTGGAAAAAAAAAGTTAGGAGTTATATGTGCGTAGGAAAGTTTTGGATGTGATGTGATGTAATGGAAAGTTGGGATTTGGNGGGAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13815#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1137 fasta sequence [GAGGTTTTTGTTGGTATGGTCCAGGATGACGGAGGAGGCGACGAGCGGGGACGCATCGCCGCCGAACGTGAAGACGATGAGCCTCATCGCGCGGCAGGCGTTCGAGATCGACGAGTACGTCAGGATCTCCGACATCCTCCACAAGAGGTGAGCGATGGACGTGCCTAGCTTGCCTCTCTTAACGAAGCCACCCACACGCACGCTGCGTTTGTGATCTGCTCGTTTGTTGGCTGATCGATTGATTCGGGGGCGGGAAATCTTACAGGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCTCGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGGTCCGTTTCAATTCTTCGTCCCGACTCGATCATATCTTCTCCTGATGTTCTCTCGCCCTTCTTTCTCATCACCGATGGTTTCTTCTTGAATCCGAGTTGCAGTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGANCGGGGCCCCTTCCTGGAGGATGAGCGTGAACTTGGCGCGCAAGATAGCGCACGAAGATCAAGGGATTCGGGCAACTTCAAACTCAGCAGCGCGCATGCGTCGGGGTCGGCGGCGGCAGCCCTCCGCGCGGGGGCGATGGAGCACCAGTGCTACGGCCGGAGCAACTCGCGGTACGAGGGCAGNTGGAGGAGGGAGGCCTGCGTGGACGACGGCGACAAGGAGANCCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGAGCCGCACCACTACCACCACCCGTTCTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCTGCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGGTTCTTCGTCGATCGCATCGTTCGTTGGTTTGTGATGCGTGAGAAAAAATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGTGATGACCCTTTTGTAATCGTCGTCCTTAATTTCAGTTCTGATTTCTGAAACTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU068647 [GAGGTTTTTGTTGGTATGGTCCAGGATGACGGAGGAGGCGACGAGCGGGGACGCATCGCCGCCGAACGTGAAGACGATGAGCCTCATCGCGCGGCAGGCGTTCGAGATCGACGAGTACGTCAGGATCTCCGACATCCTCCACAAGAGGTGAGCGATGGACGTGCCTAGCTTGCCTCTCTTAACGAAGCCACCCACACGCACGCTGCGTTTGTGATCTGCTCGTTTGTTGGCTGATCGATTGATTCGGGGGCGGGAAATCTTACAGGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCTCGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGGTCCGTTTCAATTCTTCGTCCCGACTCGATCATATCTTCTCCTGATGTTCTCTCGCCCTTCTTTCTCATCACCGATGGTTTCTTCTTGAATCCGAGTTGCAGTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGANCGGGGCCCCTTCCTGGAGGATGAGCGTGAACTTGGCGCGCAAGATAGCGCACGAAGATCAAGGGATTCGGGCAACTTCAAACTCAGCAGCGC ] [+] EMBL AU068646 [ TCGACGAGAAAGGNTCCGTTTCAATTCTTCGTCCCGACTCGATCATATCTTCTCCTGATGTTCTCTCGCCCTTCTTTCTCATCACCGATGGTTTCTTCTTGAATCCGAGTTGCAGTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGT GCGCGCAAGATAGCGCACG AGATCAAGGGATTC GGCAGCTTCAACCTCAGCAGCGCGCATGCGTCGGGGTCGGCGGCGGCAGCCCTCCGCGCGGGGGCGATGGAGCACCAGTGCTACGGCCGGAGCAACTCGCGGTACGAGGGCAGNTGGAGGAGGGAGGCCTGCGTGGACGACGGCGACAAGGAGANCCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGAGCCGCACCACTACCACCACCCGTTCTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCTGCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGGTTCTTCGTCGATCGCATCGTTCGTTGGTTTGTGATGCGTGAGAAAAAATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGTGATGACCCTTTTGTAATCGTCGTCCTTAATTTCAGTTCTGATTTCTGAAACTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL AU101244 [ GGACGACGGCGACAAGGAGAACCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGAGCCGCACCACTACCACCACCCGTTCTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCTGCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGGTTCTTCGTCGATCGCATCGTTCGTTGGTTTGTGATGCGTGAGAAAAAATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGTGATGACCCTTTTGTAATCGTCGTCCTTAATTTCAGTTCTGATTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13815#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [CTCGCCCTTCAGCTTCCACGAGCTCAGGCGGCAGGCCTCGTCCTACCTCACCGACNAGATCCGCTCCGCGCGGCTCGCGCTCACCGATGTTACCCCGACGCANCTGATGACGGAGGAGGCGACGAGCGGGGACGCATCGCCGCCGAACGTGAAGACGATGAGCCTCATCGCGCGGCAGGCGTTCGAGATCGACGAGTACGTCAGGATCTCCGACATCCTCCACAAGAGGTGAGCGATGGACGTGCCTAGCTTGCCTCTCTTAACGAAGCCACCCACACGCACGCTGCGTTTGTGATCTGCTCGTTTGTTGGCTGATCGATTGATTCGGGGGCGGGAAATCTTACAGGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCTCGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACAAGAAAGGTTTCAACTGGGGGATGACGGTNAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGTGCGCGCAAGATAGCGCACGAGAATCA] [+] EMBL CA755003 [CTCGCCCTTCAGCTTCCACGAGCTCAGGCGGCAGGCCTCGTCCTACCTCACCGACNAGATCCGCTCCGCGCGGCTCGCGCTCACCGATGTTACCCCGACGCANCTGATGACGGAGGAGGCGACGAGCGGGGACGCATCGCCGCCGAACGTGAAGACGATGAGCCTCATCGCGCGGCAGGCGTTCGAGATCGACGAGTACGTCAGGATCTCCGACATCCTCCACAAGAGGTGAGCGATGGACGTGCCTAGCTTGCCTCTCTTAACGAAGCCACCCACACGCACGCTGCGTTTGTGATCTGCTCGTTTGTTGGCTGATCGATTGATTCGGGGGCGGGAAATCTTACAGGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCTCGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACAAGAAAGGTTTCAACTGGGGGATGACGGTNAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGTGCGCGCAAGATAGCGCACGAGAATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13815#1 ------------------------------------------------------------ consensus_13815#2 ------------------------------------------------------------ consensus_13815#0 CTTTCCCCTCCAAATAAGCTCGTCCAGTCCAAGCACACAAGCCATTCCACCGCTCGCCGT 60 consensus_13815#1 ------------------------------------------------------------ consensus_13815#2 ------------------------------------------------------------ consensus_13815#0 CGCTGTCTCCCATCCCATCCCATGCATCACTAGCGGATTTGTGGAGTGGTTGCGCCCCCT 120 consensus_13815#1 ------------------------------------------------------------ consensus_13815#2 ------------------------------------------------CTCGCCCTTCAG 12 consensus_13815#0 GCGAGCGAGCTCTGTTCGTACCGCGCGCTCCGGTGCGGAGTGGTTGCTGGCCGGCGAGGC 180 consensus_13815#1 ------------------------------------------------------------ consensus_13815#2 CTTCCACGAGCTCAGGCGGCAGGCCTCGTCCTACCTCACCGACNAGATCCGCTCCGCGCG 72 consensus_13815#0 GGGCGGACGGACGCGTCGATGCGCGTGGCAGTAGCTGCGTGCGGGTGACGAAGCAGGGGC 240 consensus_13815#1 ----GAGGTTTTTGTTGGTAT------GGTCCAG--GATG----ACGGAGGAGGCGACGA 44 consensus_13815#2 GCTCGCGCTCACCGATGTTACC---CCGACGCANCTGATG----ACGGAGGAGGCGACGA 125 consensus_13815#0 ACTTGCTATATCCGTCGCCTCTTGGCGGATGTGCGGGATTCTGCGCGCAGTACGCGGCGG 300 * * * * * *** ** ** * *** ** consensus_13815#1 GCGGGGACGCATCGCCGCCGAAC-----------GTGAAGACGATGAGCCTCATCGCGCG 93 consensus_13815#2 GCGGGGACGCATCGCCGCCGAAC-----------GTGAAGACGATGAGCCTCATCGCGCG 174 consensus_13815#0 CCATGGACGCGTCCTCGCCCTTCAGCTTCCACGAGCTCAGGCGGCAGGCCTCGTCCTACC 360 * ****** ** **** * * ** ** ***** ** * consensus_13815#1 GCAGGCGTTCGAGATCGAC---GAGTACGTCAGGATCTCCGACATCCTCCACAAGAGGTG 150 consensus_13815#2 GCAGGCGTTCGAGATCGAC---GAGTACGTCAGGATCTCCGACATCCTCCACAAGAGGTG 231 consensus_13815#0 TCA--CCGACAAGATCCGCTCCGCGCGGCTCGCGCTCACCGATGTTACCCCGACGCAGCT 418 ** * * ***** * * * ** * ** **** * ** * * * consensus_13815#1 AGCGATGGACGTGCCTAGCTTGCCTCTCTTAACGAAGCCACCCACACGCACGCTGCGTTT 210 consensus_13815#2 AGCGATGGACGTGCCTAGCTTGCCTCTCTTAACGAAGCCACCCACACGCACGCTGCGTTT 291 consensus_13815#0 GATGACGGAGGAGGCGACGAGCGGGGACGCATCGCCGCCGAACGTGAAGACGATGAGCCT 478 ** *** * * * * * * ** *** * *** ** * * consensus_13815#1 G--TGATCTGCTCGTTTGTTGGCTGATCGATTGATTCGGGGGCGG-GAAATCTTACA--- 264 consensus_13815#2 G--TGATCTGCTCGTTTGTTGGCTGATCGATTGATTCGGGGGCGG-GAAATCTTACA--- 345 consensus_13815#0 CATCGCGCGGCAGGCGTTCGAGATCGACGAGTACGTCAGGATCTCCGACATCCTCCACAA 538 * * ** * * * * *** * ** ** * ** *** * ** consensus_13815#1 --GGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCT 322 consensus_13815#2 --GGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCT 403 consensus_13815#0 GAGGTTCGCGAGGTTCGACAGGCGGCAGTGGCGTGAGGCGTACAAGGCCCTCCTCCTCCT 598 ********************************************************** consensus_13815#1 CGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGA 382 consensus_13815#2 CGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGA 463 consensus_13815#0 CGAGCACCTCCTGACGCACGGCCCCCGTAGCGTCGCGTTGGAGTTCCAGAGGGATCGGGA 658 ************************************************************ consensus_13815#1 GGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGGTCCGTTTCAATTCT 442 consensus_13815#2 GGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACAAGAAAGG--------------- 508 consensus_13815#0 GGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGG--------------- 703 ************************************* ******* consensus_13815#1 TCGTCCCGACTCGATCATATCTTCTCCTGATGTTCTCTCGCCCTTCTTTCTCATCACCGA 502 consensus_13815#2 ------------------------------------------------------------ consensus_13815#0 ------------------------------------------------------------ consensus_13815#1 TGGTTTCTTCTTGAATCCGAGTTGCAGTTTCAACTGGGGGATGACGGTGAAGAGCAAGTC 562 consensus_13815#2 ---------------------------TTTCAACTGGGGGATGACGGTNAAGAGCAAGTC 541 consensus_13815#0 ---------------------------TTTCAACTGGGGGATGACGGTGAAGAGCAAGTC 736 ********************* *********** consensus_13815#1 GGAGCGCGTGCTGAGGCTGCTGGANCGGGGCCCCTTCCTGGAGGATGAGCGTGAACTTGG 622 consensus_13815#2 GGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGTG- 600 consensus_13815#0 GGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGTG- 795 ************************ ***************************** * ** consensus_13815#1 CGCGCAAGATAGCGCACGAAGATCAAGGGATTCGGGCAACTTCAAACTCAGCAGCGCGCA 682 consensus_13815#2 CGCGCAAGATAGCGCACGAGAATCA----------------------------------- 625 consensus_13815#0 CGCGCAAGATAGCGCACGA-GATCAAGGGATTCGG-CAGCTTCAACCTCAGCAGCGCGCA 853 ******************* **** consensus_13815#1 TGCGTCGGGGTCGGCGGCGGCAGCCCTCCGCGCGGGGGCGATGGAGCACCAGTGCTACGG 742 consensus_13815#2 ------------------------------------------------------------ consensus_13815#0 TGCGTCGGGGTCGGCGGCGGCAGCCCTCCGCGCGGGGGCGATGGAGCACCAGTGCTACGG 913 consensus_13815#1 CCGGAGCAACTCGCGGTACGAGGGCAGNTGGAGGAGGGAGGCCTGCGTGGACGACGGCGA 802 consensus_13815#2 ------------------------------------------------------------ consensus_13815#0 CCGGAGCAACTCGCGGTACGAGGGCAGGTGGAGGAGGGAGGCCTGCGTGGACGACGGCGA 973 consensus_13815#1 CAAGGAGANCCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGA 862 consensus_13815#2 ------------------------------------------------------------ consensus_13815#0 CAAGGAGAACCTGCTGGTGGTGTCGATGGCCGAGGCGAAGGCCGAGGCGGCGGCGGAGGA 1033 consensus_13815#1 GCCGCACCACTACCACCACCCGTTCTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCT 922 consensus_13815#2 ------------------------------------------------------------ consensus_13815#0 GCCGCACCACTACCACCACCCGTTCTACGGCTTCGGGCAGCAGCGGCCGGAGGCGATGCT 1093 consensus_13815#1 GCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGGTTCTTCGTCGATCGCATCGTTCGTT 982 consensus_13815#2 ------------------------------------------------------------ consensus_13815#0 GCTCCTGAGCCAGTAGTGATCGTTTGGGTGGATGGTTCTTCGTCGATCGCATCGTTCGTT 1153 consensus_13815#1 GGTTTGTGATGCGTGAGAAAAAATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGT 1042 consensus_13815#2 ------------------------------------------------------------ consensus_13815#0 GGTTTGTGATGCGTGAGAAAAAATCCTGTAAAGTCAGTGGCTTGCTGGCATCCTCTTTGT 1213 consensus_13815#1 GATGACCCTTTTGTAATCGTCGTCCTTAATTTCAGTTCTGATTTCTGAAACTCTAAAAAA 1102 consensus_13815#2 ------------------------------------------------------------ consensus_13815#0 GATGACCCTTTTGTAATCGTCGTCCTTAATTTCAGTTCTGATTTCTGAAACTCTAAAAAT 1273 consensus_13815#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------- 1137 consensus_13815#2 ------------------------------------------------------------ consensus_13815#0 GCCTGATTCCCTGAGCTCATAAACACACGAAGAAAGGAAATTTTGAGAAGTTGGAAGCTT 1333 consensus_13815#1 ------------------------------------------------------------ consensus_13815#2 ------------------------------------------------------------ consensus_13815#0 CAAGCTGGCAATTNCAGGCAAATACACCTGACATGAATCCGGACAGGTACAAGGATCGTG 1393 consensus_13815#1 ------------------------------------------------------------ consensus_13815#2 ------------------------------------------------------------ consensus_13815#0 AAAAGACATGCGAATGGATGAACCGATGCAGTGAAATTCTCTCTGCTATACTCCAGAGTC 1453 consensus_13815#1 ------------------------------------------------------------ consensus_13815#2 ------------------------------------------------------------ consensus_13815#0 CAGAATGTGATATGCTGAACTGATCAGAANCAGACCTAGGCCTGGTTTAGGTCGTGTTTG 1513 consensus_13815#1 ------------------------------------------------------------ consensus_13815#2 ------------------------------------------------------------ consensus_13815#0 GGAAAAGTTTGGGAAGAAGTTGATAGTTTGGAAAAAAAAAGTTAGGAGTTATATGTGCGT 1573 consensus_13815#1 ------------------------------------------------------------ consensus_13815#2 ------------------------------------------------------------ consensus_13815#0 AGGAAAGTTTTGGATGTGATGTGATGTAATGGAAAGTTGGGATTTGGNGGGAAAAAAAAA 1633 consensus_13815#1 ------------ consensus_13815#2 ------------ consensus_13815#0 AAAAAAAAAAAA 1645 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||