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Oryza sativa
cluster # 13817 cluster # 13817       Sequences # 14       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13817#0 length = 924 sequences # 12  
consensus_13817#1 length = 826 sequences # 1  
consensus_13817#2 length = 535 sequences # 1  

consensusID : consensus_13817#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 924
fasta sequence
                              [AACCCCATTCCACCCACCCACGCGCA-NCGCAGCGACGAGAGGAGAAACGAGAGAGAGAAAAAGAAGAAAGAGAAAAATGCTGCGCCACGCCGCCCGCCGCCTGGCCACCACCCGCGCCGCCGCCGCCGCCGGCCGCAGCAGCAGGGCGCTCTCGACGGCGGAGGTGCCGGCCGAGGCGGCCACCGACTCCGCCTTCGCGGAGGCGTGGAAGAAGGTGGCCCCCAACATCGAGGCCCCCGCCACGCCCATGTCGCTCATGCAGCCCCGCCCCCCCACGCCGGCGGCCATCCCCTCCAAGCTCACCGTC-AACTTCGTCCTCCCCTACAAGTCCGAGATCGCCAACAAGGAGGTTGACATGGTAATTGTACCA--GCAACAACTGGTCAGATGGGTGTTTTGCCAGGCCACGTTTCCACAATCGCAGAGCTCAAGCCTGGTGTTCTCTCGGTACACGAGGGAAACGATATCACCAAGTACTTTGTGAGCAGTGGCTTTGCATTTGTCCATGC-AAACTCCATCGCTGATATCGTGGCTGTTGAGGCTGTCCCCCTGGACCAGATCGACCCAG-CCGCGGTC-CAGCAGGGTCTCGCGGAATTCAACGCCAAGCTTGGATCGGCCTCAACTGAACTGGAGAAG-GCCGAAGCTCAGATTGGAGTGGATGTTCACAGTGCGCTCAATGCCGCTTTGGCTGGTTGATCAATACGTTTTTAAGTTGCTGTCCCTCTCTCTCTTTTGCATCTTCATTTTTAGAATGTGAGCTGAAGTTTGCAAACTCATGGATGATGGGATGGAGGGAATGATCTTAAATAAATTATACTCCATCTCAAAGACAGAACCCTGTTTCTTCTTTTAACTTGACTCCTGCATGGATTTTTGTAATAGTGAATATTTTTCTCCGAGCCTACAAAGTCGAAGTTAAAAAAAAA]

[+] EMBL AK070990             [AACCCCATTCCACCCACCCACGCGCAGCCGCAGCGACGAGAGGAGAAACGAGAGAGAGAAAAAGAAGAAAGAGAAAAATGCTGCGCCACGCCGCCCGCCGCCTGGCCACCACCCGCGCCGCCGCCGCCGCCGGCCGCAGCAGCAGGGCGCTCTCGACGGCGGAGGTGCCGGCCGAGGCGGCCACCGACTCCGCCTTCGCGGAGGCGTGGAAGAAGGTGGCCCCCAACATCGAGGCCCCCGCCACGCCCATGTCGCTCATGCAGCCCCGCCCCCCCACGCCGGCGGCCATCCCCTCCAAGCTCACCGTC AACTTCGTCCTCCCCTACAAGTCCGAGATCGCCAACAAGGAGGTTGACATGGTAATTGTACCA  GCAACAACTGGTCAGATGGGTGTTTTGCCAGGCCACGTTTCCACAATCGCAGAGCTCAAGCCTGGTGTTCTCTCGGTACACGAGGGAAACGATATCACCAAGTACTTTGTGAGCAGTGGCTTTGCATTTGTCCATGC AAACTCCATCGCTGATATCGTGGCTGTTGAGGCTGTCCCCCTGGACCAGATCGACCCAG CCGCGGTC CAGCAGGGTCTCGCGGAATTCAACGCCAAGCTTGGATCGGCCTCAACTGAACTGGAGAAG GCCGAAGCTCAGATTGGAGTGGATGTTCACAGTGCGCTCAATGCCGCTTTGGCTGGTTGATCAATACGTTTTTAAGTTGCTGTCCCTCTCTCTCTTTTGCATCTTCATTTTTAGAATGTGAGCTGAAGTTTGCAAACTCATGGATGATGGGATGGAGGGAATGATCTTAAATAAATTATACTCCATCTCAAAGACAGAACCCTGTTTCTTCTTTTAACTTGACTCCTGCATGGATTTTTGTAATAGTGAATATTTTTCTCCGAGCCTACAAAGTCGAAGTT         ]
[+] EMBL AU163686             [               ACCCACGCGCA NCGCAGCGACGAGAGGAGAAACGAGAGAGAGAAAAAGAAGAAAGAGAAAAATGCTGCGCCACGCCGCCCGCCGCCTGGCCACCACCCGCGCCGCCGCCGCCGCCGGCCGCAGCAGCAGGGCGCTCTCGACGGCGGAGGTGCCGGCCGAGGCGGCCACCGACTCCGCCTTCGCGGAGGCGTGGAAGAAGGTGGCCCCCAACATCGAGGNCCCCGCCACGCCCATGTCGCTCATGCAGNCCCGCCCCCNCACGCCGGCGG CATCCCCTCCAAGCTCACCGTC AACTTCGTCCTCCCCTACAAGTCCGAGATCGNCAACAAGGAGGTTGACATGGTAATTGTACCA  GCAACAACTTGTCAGATGGGTGTTTTGCCANGGCACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU164410             [               ACCCACGCGCA NCGCAGCGACGAGAGGAGAAACGAGAGAGAGAAAAAGAAGAAAGAGAAAAATGCTGCGCCACGCCGCCCGCCGCCTGGCCANCACCCGCGCCGCCGCCGCCGCCGGCCGCAGCAGCAGGGCGCTCTCGACGGCGGAGGTGCCGGCCGAGGCGGCCACCGACTCCGCCTTCGCGGAGGCGTGGAAGAAGGTGGCCCCCAACATCGAGGCCCCCGCCACGCCCATGTCGCTCATGCAGCCCCGCCCCCCCACGCCGGCGGCCATTCNCTTCAAAGTTAACGTCAAATTTCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU068811             [                                GCGACGAGAGGAGAAACGAGAGANAGAAAAANAAGAAAGAGAAAANTNCTGCGCCACGCCGCCCGCCGCCTGGCCACCACCCGCNCCGCCGCCGCCGCCGGCCGCAGCAGCAGGGCGCTCTCGACGGCGGAGGTGCCGGCCGAGGCGGTCACCGATTCCGNNTTCGCGGAGGCTTGGAAGAAGGTGGCCCCCAACATCGAGGCCCCCGNCACGNCCATTTGGCTCATGCAGCCCCGGCCCCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU172874             [                                     GAGAGGAGAAACGAGAGAGAGAAAAAGAAGAAAGAGAAAAATGCTGCGCCACGCCGCCCGCCGCCTGGCCACCACCCGCGCCGCCGCCGCCGCCGGCCGCAGCAGCAGGGCGCTCTCGACGGCGGAGGTGCCGGCCGAGGCGGCCACCGACTCCGCCTTCGCGGAGGCGTGGAAGAAGGTGGCCCCCAACATCGAGGCCCCCGCCACGCCCATGTCGCTCATGCAGCCCCGCCCCCCCACGCCGGCGGCCATCCCCTCCAAGCTCACCGTC AACTTCGTCCTCCCCTACAAGTCCGAGATCGCCAACAAGGAGGTTGACATGGTAATTGTACCA  GCAACAACTGGTCAGATGGGTGTTTTGCCAGGCCACGTTTCCACAATCGCAGAGCTCAAGCCTGGTGTTCTnt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CA753627             [                                                 GAGAGAGAGAAAAAGAAGAAAGAGAAAAATGCTGCGCCACGCCGCCCGCCGCCTGGCCACCACCCGCGCCGCCGCCGCCGCCGGCCGCAGCAGCAGGGCGCTCTCGACGGCGGAGGTGCCGGCCGAGGCGGCCACCGACTCCGCCTTCGCGGAGGCGTGGAAGAAGGTGGCCCCCAACATCGAGGCCCCCGCCACGCCCATGTCGCTCATGCAGCCCCGCCCCCCCACGCCGGCGGCCATCCCCTCCAAGCTCACCGTC AACTTCGTCCTCCCCTACAAGTCCGAGATCGCCAACAAGGAGGTTGACCTGGTAATTGTACCA  GCAACAACTGGTCAGATGGGTGTTTTGCCAGGCCACGTTTCCACAATCGCAGAGCTCAAGCCTGGTGTTCTCTCGGTACACGAGGGAAACGATATCACCAAGTACTTTGTGAGCAGTGGCTTTGCATTTGTCCATGC AAACCCCATCGCTGATATCCTGGCTGTTGAAGCTGT CCCCTGGACCAGATTCACCCA  CCGCGGTCTCA CAGGGTC CCCGGAA TCAACCCCCAGCTGGGATC GCC CCACCGACCCGGAAAAGCGCC AACCTCna                                                                                                                                                                                                                                                                                      ]
[+] EMBL BI795636             [                                                                                                                                                                                                                                                                                                                                tCCCTACAAGTCCGAGATC CCAACAAGGAGGTTGACATGGTAATTGTACCAAGGCAACAACTGGTCAGATG   GTTTTTCCA GCCACGTTTCCACAATCGCAGAGCTCAAGCCTGGTGTTCTCTCGGTACACGAGGGAAACGATATCACCAAGTACTTTGTGACCAGTGGCTTTGCATTTGTCCATGCAAAACTCCATCGCTGATATTGTGGCTGTTGAGGCTGTCCCCCTGGACCAGATCGACCCAG CCGCGGTC CAGCAGGGTCTCGCGGAATTCAACGCCAAGCTTGGATCGGCCTCAACTGAACTGGAGAAG GCCGAAGCTCAGATTGGAGTGGATGTTCACAGTGCGCTCAATGCCGCTTTGGCTGGTTGATCAATACGTTTTTAAGTTGCTGTCCCTCTCTCTCTTTTGCATCTTCATTTTTAGAATGTGAGCTGAAGTTTGCAAACTCATGGATGATGGGATGGAGGGAATGATCTTAAATAAATTATACTCCATCTCAAAGACAGAACCCTGTTTCTTCTTTTAACTTGACTCCTGCATGGATTTTTGTAAaaa                                            ]
[+] EMBL AA749536             [                                                                                                                                                                                                                                                                                                                                                                                                                          GTTTCCACAATCGCAGAGCTCAAGCCTGGTGTTCTCTCGGTACACGA GGAAACGATATCACCAAGTACTTTGTGAGCAGTGGCTTTGCATTTGTCCATGC AAACTCCATCGCTGATATTGTGGCTGTTGAGGCTGTCCCCCTGGCACAGATCGACCCAGTCCGCGGTC CAGCAGGGTCTCGC GAATTCAAC NCAAGCTTG                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU172875             [                                                                                                                                                                                                                                                                                                                                                                                                                                 CAATCGCAGAGCTCAAGCCTGGTGTTCTCTCGGTACACGAGGGAAACGATATCACCAAGTACTTTGTGAGCAGTGGCTTTGCATTTGTCCATGC AAACTCCATCGCTGATATCGTGGCTGTTGAGGCTGTCCCCCTGGACCAGATCGACCCAG CCGCGGTC CAGCAGGGTCTCGCGGAATTCAACGCCAAGCTTGGATCGGCCTCAACTGAACTGGAGAAG GCCGAAGCTCAGATTGGAGTGGATGTTCACAGTGCGCTCAATGCCGCTTTGGCTGGTTGANCAATACGTTTTTAAGTTGCTGTCCCTCTCTCTCTTTTGCATCTTCATTTTTAGAATGTGAGCTGAAGTTTGCAAACTCATGGATGATGGGATGGAGGGAATGATCTTAAATAAATTATACTCCATCTCAAAGACAAAAa                                                                                          ]
[+] EMBL CB685403             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 gagtcttATGTTCACAGTGCGCTCAATGCCGCTTTGGCTGGTTGATCAATACGTTTTTAAGTTGCTGTCCCTCTCTCTCTTTTGCATCTTCATTTTTAGAATGTGAGCTGAAGTTTGCAAACTCATGGATGATGGGATGGAGGGAATGATCTTAAATAAATTATACTCCATCTCAAAGACAGAACCCTGTTTCTTCTTTTAACTTGACTCCTGCATGGATTTTTGTAATAGTGAATATTTTTCTCCGAGCCTACAAAGTCGAAGTT         ]
[+] EMBL CF330568             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGGATGGAGGGAATGATCTTAAATAAATTATACTCCATCTCAAAGACAGAACCCTGTTTCTTCTTTTAACTTGACTCCTGCATGGATTTTTGTAATAGTGAATATTTTTCTCCGAGCCTAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF330569             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        aaaaaaaGGAATGTTTTTAAATAAATTATACTCCATCTCAAAGACAGAACCCTGTTTTTTTTTTTAACTTGACTCCGGCATGGATTTTTGTAATAGTGAATATTTTTTTCCGAGCCTAAAA                   ]


>consensus_13817#0 AACCCCATTCCACCCACCCACGCGCANCGCAGCGACGAGAGGAGAAACGAGAGAGAGAAA AAGAAGAAAGAGAAAAATGCTGCGCCACGCCGCCCGCCGCCTGGCCACCACCCGCGCCGC CGCCGCCGCCGGCCGCAGCAGCAGGGCGCTCTCGACGGCGGAGGTGCCGGCCGAGGCGGC CACCGACTCCGCCTTCGCGGAGGCGTGGAAGAAGGTGGCCCCCAACATCGAGGCCCCCGC CACGCCCATGTCGCTCATGCAGCCCCGCCCCCCCACGCCGGCGGCCATCCCCTCCAAGCT CACCGTCAACTTCGTCCTCCCCTACAAGTCCGAGATCGCCAACAAGGAGGTTGACATGGT AATTGTACCAGCAACAACTGGTCAGATGGGTGTTTTGCCAGGCCACGTTTCCACAATCGC AGAGCTCAAGCCTGGTGTTCTCTCGGTACACGAGGGAAACGATATCACCAAGTACTTTGT GAGCAGTGGCTTTGCATTTGTCCATGCAAACTCCATCGCTGATATCGTGGCTGTTGAGGC TGTCCCCCTGGACCAGATCGACCCAGCCGCGGTCCAGCAGGGTCTCGCGGAATTCAACGC CAAGCTTGGATCGGCCTCAACTGAACTGGAGAAGGCCGAAGCTCAGATTGGAGTGGATGT TCACAGTGCGCTCAATGCCGCTTTGGCTGGTTGATCAATACGTTTTTAAGTTGCTGTCCC TCTCTCTCTTTTGCATCTTCATTTTTAGAATGTGAGCTGAAGTTTGCAAACTCATGGATG ATGGGATGGAGGGAATGATCTTAAATAAATTATACTCCATCTCAAAGACAGAACCCTGTT TCTTCTTTTAACTTGACTCCTGCATGGATTTTTGTAATAGTGAATATTTTTCTCCGAGCC TACAAAGTCGAAGTTAAAAAAAAA



consensusID : consensus_13817#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 826
fasta sequence
                              [AGACCCCCGCCACGCCCATGTCGCTCATGCAGCCCCGCCCCCCCACGCTGGCGGCCATCCCCTCCAAGCTCACCGTCAACTTCGTCCTCCCCTACAAGTCCGAGATCGCCAACAAGGAGGCTGATTGCTACGGGTCATGGAGGAGGCAATCCGCTCTGGCCATACATCACCTTCCCATGGGCACGATTGCAGCCAAGATTCTGCCGTGGGAAGTGCCGTCTCGTGAGACCCTACTGAGGACAATCAATGCTGCTCTCGATGACGGCAATGTCGACGACGTGCTGCAAGCATTTGCCAATTACAAGACCCTGCATGGCCTTCCTGAGCCGCGGGTGTTGGACAGGATGATCGTGTCGCTGTCCTATGCGTCTAGCAGGAGATGGCTTCAGAGGGCATTCGACATGGTCTTGTCAGTTTACCAATGCAATGGCAACCTTCTTAATTGTGGCTCGCTGATGAAGCTAGCTCTGGCGCTTGCCAGAGATCAGATGCCGATTCCAGCCTCCACAGTGGTGAGGATCATATTGGAGAGCGGCAAGCTTCCTGATGTTGATATGCTGACCATGGTGTACTTGCATATGGTGAAGTCACAAGTAGGATCCTATCTTGCTGCTGATGTTTTGTGTGAGACCTGCGAGTGTTTCTTGGAGCAGATTGGAGATAGAAGGCAGCTGAAAAAACTGGATCCAATAAAGAGTAATGTTACCTTGTTTAATATGGTTTTGAAGTCATGTGTCGATTTCAAATGCATGATCAAGGCCCAAAGAATAATGGAGCTTATGTCGCTGGTTGGGGTTGTGGCCGATGTAAATACAGTGGCTATCGC]

[+] EMBL CB629989             [AGACCCCCGCCACGCCCATGTCGCTCATGCAGCCCCGCCCCCCCACGCTGGCGGCCATCCCCTCCAAGCTCACCGTCAACTTCGTCCTCCCCTACAAGTCCGAGATCGCCAACAAGGAGGCTGATTGCTACGGGTCATGGAGGAGGCAATCCGCTCTGGCCATACATCACCTTCCCATGGGCACGATTGCAGCCAAGATTCTGCCGTGGGAAGTGCCGTCTCGTGAGACCCTACTGAGGACAATCAATGCTGCTCTCGATGACGGCAATGTCGACGACGTGCTGCAAGCATTTGCCAATTACAAGACCCTGCATGGCCTTCCTGAGCCGCGGGTGTTGGACAGGATGATCGTGTCGCTGTCCTATGCGTCTAGCAGGAGATGGCTTCAGAGGGCATTCGACATGGTCTTGTCAGTTTACCAATGCAATGGCAACCTTCTTAATTGTGGCTCGCTGATGAAGCTAGCTCTGGCGCTTGCCAGAGATCAGATGCCGATTCCAGCCTCCACAGTGGTGAGGATCATATTGGAGAGCGGCAAGCTTCCTGATGTTGATATGCTGACCATGGTGTACTTGCATATGGTGAAGTCACAAGTAGGATCCTATCTTGCTGCTGATGTTTTGTGTGAGACCTGCGAGTGTTTCTTGGAGCAGATTGGAGATAGAAGGCAGCTGAAAAAACTGGATCCAATAAAGAGTAATGTTACCTTGTTTAATATGGTTTTGAAGTCATGTGTCGATTTCAAATGCATGATCAAGGCCCAAAGAATAATGGAGCTTATGTCGCTGGTTGGGGTTGTGGCCGATGTAAATACAGTGGCTATCGC]


>consensus_13817#1 AGACCCCCGCCACGCCCATGTCGCTCATGCAGCCCCGCCCCCCCACGCTGGCGGCCATCC CCTCCAAGCTCACCGTCAACTTCGTCCTCCCCTACAAGTCCGAGATCGCCAACAAGGAGG CTGATTGCTACGGGTCATGGAGGAGGCAATCCGCTCTGGCCATACATCACCTTCCCATGG GCACGATTGCAGCCAAGATTCTGCCGTGGGAAGTGCCGTCTCGTGAGACCCTACTGAGGA CAATCAATGCTGCTCTCGATGACGGCAATGTCGACGACGTGCTGCAAGCATTTGCCAATT ACAAGACCCTGCATGGCCTTCCTGAGCCGCGGGTGTTGGACAGGATGATCGTGTCGCTGT CCTATGCGTCTAGCAGGAGATGGCTTCAGAGGGCATTCGACATGGTCTTGTCAGTTTACC AATGCAATGGCAACCTTCTTAATTGTGGCTCGCTGATGAAGCTAGCTCTGGCGCTTGCCA GAGATCAGATGCCGATTCCAGCCTCCACAGTGGTGAGGATCATATTGGAGAGCGGCAAGC TTCCTGATGTTGATATGCTGACCATGGTGTACTTGCATATGGTGAAGTCACAAGTAGGAT CCTATCTTGCTGCTGATGTTTTGTGTGAGACCTGCGAGTGTTTCTTGGAGCAGATTGGAG ATAGAAGGCAGCTGAAAAAACTGGATCCAATAAAGAGTAATGTTACCTTGTTTAATATGG TTTTGAAGTCATGTGTCGATTTCAAATGCATGATCAAGGCCCAAAGAATAATGGAGCTTA TGTCGCTGGTTGGGGTTGTGGCCGATGTAAATACAGTGGCTATCGC



consensusID : consensus_13817#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 535
fasta sequence
                              [CTTGTACCCAGCCAACCAACCTGGTCAGATGGGTGTTTTGCCCAGGCCCACGTTTCCCACAATCCGCCAGAGCCTCCAAGCCTGGTGTTCTCTCCGGTACACACCCGCACGCGGAAACCGAATATCACCCCAAAGGTTACCCTTTTTTGCTGGAGCCCACGTGGCCTTTGCCCACATTGTGGGTCCCACGTGCCCACAGACTCCATTCGCCTGATATTTGTGGCCTGTTGAGGCTGTCCCCCTGGACCCAGATCGACCCAGCCGCCGGTCCAGCCAGGGTCTCGCGGAATTCAACGCCAAGCTTGGATCGGCCTCAACCTGAACCTGGAGAAGGCCGAAGCTCAGATTGGAGTGGATGTTCACCACGTGCGCTCAATGCCCGCCTTTGGCTGGTTGATCAATACGTTTTTAAGTTGCTGTCCCTCTCTCTCTTTTGCATCTTCATTTTTAGAATGTGAGCTGAAGTTTGCAAACTCATGGATGATGGGATGGAGGGAATGATCTTAAATAAATTATACTCCATCTCAAAAAAAAA]

[+] EMBL BI800025             [CTTGTACCCAGCCAACCAACCTGGTCAGATGGGTGTTTTGCCCAGGCCCACGTTTCCCACAATCCGCCAGAGCCTCCAAGCCTGGTGTTCTCTCCGGTACACACCCGCACGCGGAAACCGAATATCACCCCAAAGGTTACCCTTTTTTGCTGGAGCCCACGTGGCCTTTGCCCACATTGTGGGTCCCACGTGCCCACAGACTCCATTCGCCTGATATTTGTGGCCTGTTGAGGCTGTCCCCCTGGACCCAGATCGACCCAGCCGCCGGTCCAGCCAGGGTCTCGCGGAATTCAACGCCAAGCTTGGATCGGCCTCAACCTGAACCTGGAGAAGGCCGAAGCTCAGATTGGAGTGGATGTTCACCACGTGCGCTCAATGCCCGCCTTTGGCTGGTTGATCAATACGTTTTTAAGTTGCTGTCCCTCTCTCTCTTTTGCATCTTCATTTTTAGAATGTGAGCTGAAGTTTGCAAACTCATGGATGATGGGATGGAGGGAATGATCTTAAATAAATTATACTCCATCTCAAAAAAAAA]


>consensus_13817#2 CTTGTACCCAGCCAACCAACCTGGTCAGATGGGTGTTTTGCCCAGGCCCACGTTTCCCAC AATCCGCCAGAGCCTCCAAGCCTGGTGTTCTCTCCGGTACACACCCGCACGCGGAAACCG AATATCACCCCAAAGGTTACCCTTTTTTGCTGGAGCCCACGTGGCCTTTGCCCACATTGT GGGTCCCACGTGCCCACAGACTCCATTCGCCTGATATTTGTGGCCTGTTGAGGCTGTCCC CCTGGACCCAGATCGACCCAGCCGCCGGTCCAGCCAGGGTCTCGCGGAATTCAACGCCAA GCTTGGATCGGCCTCAACCTGAACCTGGAGAAGGCCGAAGCTCAGATTGGAGTGGATGTT CACCACGTGCGCTCAATGCCCGCCTTTGGCTGGTTGATCAATACGTTTTTAAGTTGCTGT CCCTCTCTCTCTTTTGCATCTTCATTTTTAGAATGTGAGCTGAAGTTTGCAAACTCATGG ATGATGGGATGGAGGGAATGATCTTAAATAAATTATACTCCATCTCAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13817#0      AACCCCATTCCACCCACCCACGCGCANCGCAGCGACGAGAGGAGAAACGAGAGAGAGAAA 60
consensus_13817#2      ------------------------------------------------------------
consensus_13817#1      ------------------------------------------------------------
                                                                                   

consensus_13817#0      AAGAAGAAAGAGAAAAATGCTGCGCCACGCCGCCCGCCGCCTGGCCACCACCCGCGCCGC 120
consensus_13817#2      ------------------------------------------------------------
consensus_13817#1      ------------------------------------------------------------
                                                                                   

consensus_13817#0      CGCCGCCGCCGGCCGCAGCAGCAGGGCGCTCTCGACGGCGGAGGTGCCGGCCGAGGCGGC 180
consensus_13817#2      ------------------------------------------------------------
consensus_13817#1      ------------------------------------------------------------
                                                                                   

consensus_13817#0      CACCGACTCCGCCTTCGCGGAGGCGTGGAAGAAGGTGGCCCCCAACATCGAGGCCCCCGC 240
consensus_13817#2      ------------------------------------------------------------
consensus_13817#1      --------------------------------------------------AGACCCCCGC 10
                                                                                   

consensus_13817#0      CACGCCCATGTCGCTCATGCAGCCCCGCCCCCCCACGCCGGCGGCCATCCCCTCCAAGCT 300
consensus_13817#2      ------------------------------------------------------------
consensus_13817#1      CACGCCCATGTCGCTCATGCAGCCCCGCCCCCCCACGCTGGCGGCCATCCCCTCCAAGCT 70
                                                                                   

consensus_13817#0      CACCGTCAACTTCGTCCTCCCCTACAAGTCCGAGATCGCCAACAAGGAGGTTGACATGGT 360
consensus_13817#2      ----CTTGTACCCAGCCAACCAACCTGGTCAGATGGGTGTTTTGCCCAGGCCCACGTT-T 55
consensus_13817#1      CACCGTCAACTTCGTCCTCCCCTACAAGTCCGAGATCGCCAACAAGGAGGCTGAT-TGCT 129
                            *      *  **  **   *  *** **              ***   *  *  *

consensus_13817#0      AATTGTACCAGCAACAACTGGTCAGATGGGTGTTTTGCCAGGCC-ACGTTTCCACAATCG 419
consensus_13817#2      CCCACAATCCGCCAGAGCCTCCAAGCCTGGTGTTCTCTCCGGT--ACACACCCGCA--CG 111
consensus_13817#1      ACGGGTCATGGAGGAGGCAATCCGCTCTGGCCATACATCACCTTCCCATGGGCACGATTG 189
                                 *      *          **   *    *       *     * *    *

consensus_13817#0      CAG----AGCTCAAGCCTGG----TGTTCTCTCGGTACACGAGGGAAACGA-TATCACCA 470
consensus_13817#2      CGG----AAACCGAATATCA----C-CCCAAAGGTTACCCTTTTTTGCTGG-AGCCCACG 161
consensus_13817#1      CAGCCAAGATTCTGCCGTGGGAAGTGCCGTCTCGTGAGACCCTACTGAGGACAATCAATG 249
                       * *        *     *               *  *  *         *     *    

consensus_13817#0      AGTACTTTGTGAGCAGTG-GCTTTGC-ATTTGTC-CATGCAAACTCCATCG--CTGATAT 525
consensus_13817#2      TGGCCTTTGCCCACATTGTGGGTCCC-ACGTGCC-CA--CAGACTCCATTCGCCTGATAT 217
consensus_13817#1      CTGCTCTCGATGACGGCAATGTCGACGACGTGCTGCAAGCATTTGCCAATTACAAGACCC 309
                             * *    *           * *  **   **  **    ***       **   

consensus_13817#0      C--GTGGC-TGTTGAGGCTGTCCCCCTGGACC-AGATCGACCCAGCCGC-GGTCCAGC-A 579
consensus_13817#2      TT-GTGGCCTGTTGAGGCTGTCCCCCTGGACCCAGATCGACCCAGCCGCCGGTCCAGCCA 276
consensus_13817#1      TGCATGGCCTTCCTGAGCCGCGGGTGTTGGAC-AGGATGATCGTGTCGCTGTCCTAT--- 365
                           **** *      ** *      * *  * **   ** *  * *** *  * *    

consensus_13817#0      GGGTCTCGCGGAATTCAACGCCAAG-----CTTGGATCGGCCTCAAC--TGAAC-TGGAG 631
consensus_13817#2      GGGTCTCGCGGAATTCAACGCCAAG-----CTTGGATCGGCCTCAACC-TGAACCTGGAG 330
consensus_13817#1      GCGTCTAGCAGGAGATGGCTTCAGAGGGCATTCGACATGGTCTTGTCAGTTTACCAATGC 425
                       * **** ** * *     *  **        * *    ** **   *  *  **      

consensus_13817#0      AAGGCCGAAGCTCAGATTGGAGTGGATGTTCACA--GTGCGCTC-AATGCCG--CTTTGG 686
consensus_13817#2      AAGGCCGAAGCTCAGATTGGAGTGGATGTTCACCACGTGCGCTC-AATGCCCGCCTTTGG 389
consensus_13817#1      AATGGCAACCTTCTTAATTGTG-GCTCGCTGATGAAGCTAGCTCTGGCGCTTGCCAGAGA 484
                       ** * * *   **  * * * * *   * * *    *   ****    **    *   * 

consensus_13817#0      CTGGTTGATCAATAC-GTTTTTAAGTTGCTGTCCCTCTCTCTCTTTTGCATCTTCATTTT 745
consensus_13817#2      CTGGTTGATCAATAC-GTTTTTAAGTTGCTGTCCCTCTCTCTCTTTTGCATCTTCATTTT 448
consensus_13817#1      TCAGATGCCGATTCCAGCCTCCACAGTGGTGAGGATCATATTGGAGAGCGGCAAGCTTCC 544
                          * **   * * * *  *  *   ** **    **    *     **  *    **  

consensus_13817#0      TAGAAT--GTGAGCTGAAGTTTGCAAACTCATGGATGATGGGATGGAGGGAATGATCTTA 803
consensus_13817#2      TAGAAT--GTGAGCTGAAGTTTGCAAACTCATGGATGATGGGATGGAGGGAATGATCTTA 506
consensus_13817#1      TGATGTTGATATGCTGACCATGGTGTACTTGCATATGGTGAAGTCACAAGTAGGATCCTA 604
                       *    *   *  *****   * *   ***     *** **   *     * * **** **

consensus_13817#0      AATAAATT---ATACTCCATCTCAAA-----GACAGAACCCTGTTTCTTCTTTTAACTTG 855
consensus_13817#2      AATAAATT---ATACTCCATCTCAAA-----AAAAAA----------------------- 535
consensus_13817#1      TCTTGCTGCTGATGTTTTGTGTGAGACCTGCGAGTGTTTCTTGGAGCAGATTGGAGATAG 664
                         *   *    **  *   * * * *      *                           

consensus_13817#0      ACTCCTGCATGGATTTTTG----TAATAGTGAATATTTTTCTCCGAGCCTACAAAGTC-- 909
consensus_13817#2      ------------------------------------------------------------
consensus_13817#1      AAGGCAGCTGAAAAAACTGGATCCAATAAAGAGTAATGTTACCTTGTTTAATATGGTTTT 724
                                                                                   

consensus_13817#0      GAAGTTAAAAAAAAA--------------------------------------------- 924
consensus_13817#2      ------------------------------------------------------------
consensus_13817#1      GAAGTCATGTGTCGATTTCAAATGCATGATCAAGGCCCAAAGAATAATGGAGCTTATGTC 784
                                                                                   

consensus_13817#0      ------------------------------------------
consensus_13817#2      ------------------------------------------
consensus_13817#1      GCTGGTTGGGGTTGTGGCCGATGTAAATACAGTGGCTATCGC 826
                                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)