These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13830#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 886 fasta sequence [GCAGCAAAAAAAAGAGAAAAAAATCAGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGCGCGACGCCGGCGGCGTCGCCGTCGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG-TTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGGCCGCGGCGGCCGCGGAGGAGGCGAAGGAGGACGGCGACGCGCCGGCGAACTCCCCGGCGTACGGGGTGGCGGTGTACAACGTGACGACGGGGGAGTGGAGGCGGGAGAAGGCGGCGCCGCCGGTGCCCATGTTCGCGCAGTGCGCCGCGGTGGGGACGCGCCTGGCGGTGCTCGGCGGGTGGGACCCCGAGACGTTCGAGCCCGTGGCGGACGTCCACGTGCTCGACGCCTCCACCGGCGTGTGGCGGAGCGCGCCGCCGATGCGGTCGGCGAGGTCCTTC-TTCGCGTGCGCGGAGGCCGGCGGGAGGATCTACGTGGCGGGCGGGCACGACAAGCACAAGAACGCGCTCAAGACGGCGGAGGCGTACGACGCCGTGGCGGACGCGTGGGACCCGCTCCCGGACATGTCGGAGGAGCGGGACGAGTGCGACGGGATGGCGACCGTCGCCGGCGACAGGTTCCTCGCCGTGAGCGGGTACCGCACGGCGAGGCAGGGCGGGTTCGAGCGCGACGCCGAGTGGTTCGACCCGGCGGCGCGCGCGTGGCGCCGCCTCGACCGCGTCCGCGCCCCTCCCTCCGCCGCCCAC] [+] EMBL OSC897 [GCAGCAAAAAAAAGAGAAAAAAATCAGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGCGCGACGCCGGCGG GNCNGNTNCGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACG CCGCGTTTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGC ] [+] EMBL CB644684 [ aAAAAACATTAGAAAAAAATCAGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGCGCGACGCCGGCGGCGTCGCCGTCGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG TTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGGCCGCGGCGGCCGCGGAGGAGGCGAAGGAGGACGGCGACGCGCCGGCGAACTCCCCGGCGTACGGGGTGGCGGTGTACAACGTGACGACGGGGGAGTGGAGGCGGGAGAAGGCGGCGCCGCCGGTGCCCATGTTCGCGCAGTGCGCCGCGGTGGGGACGCGCCTGGCGGTGCTCGGCGGGTGGGACCCCGAGACGTTCGAGCCCGTGGCGGACGTCCACGTGCTCGACGCCTCCACCGGCGTGTGGCGGAGCGCGCCGCCGATGCGGTCGGCGAGGTCCTTC TTCGCGTGCGCGGAGGCCGGCGGGAGGATCTACGTGGCGGGCGGGCACGACAAGCACAAGAACGCGCTCAAGACGGCGGAGGCGTACGACGCCGTGGCGGAC ] [+] EMBL AU162763 [ AAAAAAAGAGAAAAAAATCAGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGC CNACGCCGGCGGCGTCGCCGTCGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG TTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCC ] [+] EMBL CB667566 [ AGAACCTATTCCCAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGCGCGACGCCGGCGGCGTCGCCGTCCAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG TTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGGCCGCGGCGGCCGCGGAGGAGGCGAAGGAGGACGGCGACGCGCCGGCGAACTCCCCGGCGTACGGGGTGGCGGTGTACAACGTG ] [+] EMBL CB645994 [ AAAACCCTCTGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGCGCGACGCCGGCGGCGTCGCCGTCGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG TTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGGCCGCGGCGGCCGCGGAGGAGGCGAAGGAGGACGGCGACGCGCCGGCGAACTCCCCGGCGTACGGGGTGGCGGTGTACAACGTGACGACGGGGGAGTGGAGGCGGGAGAAGGCGGCGCCGCCGGTGCCCATGTTCGCGCAGTGCGCCGCGGTGGGGACGCGCCTGGCGGTGCTCGGCGGGTGGGACCCCGAGACGTTCGAGCCCGTGGCGGACGTCCACGTGCTCGACGCCTCCACCGGCGTGTGGCGGAGCGCGCCGCCGATGCGGTCGGCGAGGTCCTTC TTCGCGTGCGCGGAGGCCGGCGGGAGGATCTACGTGGCGGGCGGGCACGACAAGCACAAGAACGCGCTCAAGACGGCGGAGGCGTACGACGCCGTGGCGGACGCGTGGGACCCGCTC ] [+] EMBL CB660640 [ AAAAAATCAGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGCGCGACGCCGGCGGCGTCGCCGTCGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG TTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGGCCGCGGCGGCCGCGGAGGAGGCGAAGGAGGACGGCGACGCGCCGGCGAACTCCCCGGCGTACGGGGTGGCGGTGTACAACGTGACGACGGGGGAGTGGAGGCGGGAGAAGGCGGCGCCGCCGGTGCCCATGTTCGCGCAGTGCGCCGCGGTGGGGACGCGCCTGGCGGTGCTCGGCGGGTGGGACCCCGAGACGTTCGAGCCCGTGGTGGACGTCCACGTGCTCGACGCCTCCACCGGCGTGTGGCGGAGCGCGCCGCCGATGCGGTCGGCGAGGTCCTTC TTCGCGTGCGCGGAGGCCGGCGGGAGGATCTACGTGGCGGGCGGGCACGACAAGCACAAGAACGCGCTCAAGACGGCG ] [+] EMBL CB636745 [ gAAAAAATCAGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGCGCGACGCCGGCGGCGTCGCCGTCGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCTCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG TTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGGCCGCGGCGG ] [+] EMBL CA755528 [ AAAAATCAGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGCGCGACGCCGGCGGCGTCGCCGTCGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG TTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGGACGCGGCGGCCGCGGAGGAGGCGAAGGAGGACGGCGACGCGCCGGCGAACTCCCCGGCGTACGGGGTGGCGGTGTACAACGTGACGACGGGGGAGTGGAGGCGGGAGAAGGCGGCGCCGCCGGTGCCCATGTTCGCGCAGTGCGCCGCGGTGGGGACGCGCCTGGCGGTGCTCGGCGGGTGGTACCCCGATACGTTCGAGCCCGTGGCGGACGTCCACGTGCTCGACGCCTCCACCGGCGTTTGCCGGAGCGCGCCGTCGATGCGGTTGGCGAGGTCCTTCTTTCGC TGCGCGGAGGTC GCGGGAGGATCTACGGGCCGGGg ] [+] EMBL CB647074 [ agattccccTCAGAGAAAAACAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGCGCGACGCCGGCGGCGTCGCCGTCGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG TTCGCCATGGCGCGCGCCGAGGCGGGCGCCTACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGGCCGCGGCGGCCGCGGAGGAGGCGAAGGAGGACGGCGACGCGCCGGCGAACTCCCCGGCGTACGGGGTGGCGGTGTACCACGTGACGACGGGGGAGTGGAGGCGGGA ] [+] EMBL CB669593 [ tAGAAAAAAGAATGAGGAGCCCGAGGAGCCGAGCGCTAGAGCGCGACGCCGGCGGCGACGCCGACGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG TTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGGCCGCGGCGGCCGCGGAGGAGGCGAAGGAGGACGGCGACGCGCCGGCGAACTCCCCGGCGTACGGGGTGGCGGTGTACAACGTGACGACGGGGGAGTGGAGGCGGGAGAAGGCGGCGCCGCCGGTGCCCATGTTCGCGCAGTGCGCCGCGGTGGGGACGCGCCTGGCGGTGCTCGGCGGGTGGGACCCCGAGACGTTCGAGCCCGTGGCGGACGTCCACGTGCTCGACGCCTCCACCGGCGTGTGGCGGAGCGCGCCGCCGATGCGGTCGGCGAGGTCCTTC TTCGCGTGCGCGGAGGCCGGCGGGAGGATCTACGTGGCGGGCGGGCACCACAAGCACAAGAACGCGCTCAAGACGGCGGAGGCGTACGACGCCGTGGCGGACGCGTGGGACCCGC ] [+] EMBL CB662102 [ CGACGCCCGCGGCGTCGCCGTCGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG TTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGGCCGCGGCGGCCGCGGAGGAGGCGAAGGAGGACGGCGACGCGCCGGCGAACTCCCCGGCGTACGGGGTGGCGGTGTACAACGTGACGACGGGGGAGTGGAGGCGGGAGAAGGCGGCGCCGCCGGTGCCCATGTTCGCGCAGTGCGCCGCGGTGGGGACGCGCCTGGCGGTGCTCGGCGGGTGGGACCCCGAGACGTTCGAGCCCGTGGCGGACGTCCACGTGCTCGACGCCTCCACCGGCGTGTGGCGGAGCGCGCCGCCGATGCGGTCGGCGAGGTCCTTC TTCGCGTGCGCGGAGGCCGGCGGGAGGATCTACGTGGCGGGCGGGCACGACAAGCACAAGAACGCGCTCAAGACGGCGGAGGCGTACGACGCCGTGGCGGACGCGTGGGACCCGCTCCCGGACATGTCGGAGGAGCGGGACGAGTGCGACGGGATGGCGACCGTCGCCGGCGACAGGTTCCTCGCC ] [+] EMBL CB675674 [ GTCTAGCTCTTCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTGGAGGAGCGCGGCGGCGACGCCCGCG TTCGCCATGGCGCGCGCCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGGCCGCGGCGGCCGCGGAGGAGGCGAAGGAGGACGGCGACGCGCCGGCGAACTCCCCGGCGTACGGGGTGGCGGTGTACAACGTGACGACTGGGGAGTGGAGGCGGGAGAAGGCGGCGCCGCCGGTGCCCATGTTCGCGCAGTGCGCCGCGGTGGGGACGCGCCTGGCGGTGCTCGGCGGGTGGGACCCCGAGACGTTCGAGCCCGTGGCGGACGTCCACGTGCTCGACGCCTCCACCGGCGTGTGGCGGAGCGCGCCGCCGATGCGGTCGGCAAGGTCCTTC TTCGCGTGCGCGGAGGCCGGCGGGAGGATCTACGTGGCGGGCGGGCACCACTAGCACAACAACGCGCTCAAGACGGCGGAGGCGTACGACGCCGTGGCGGACGCGTGGGACCCGCTCCCGGACATGTCAGATGAGCGGGACGAGTGCGACCGG ] [+] EMBL AU163663 [ CGTGCGCGGAGGCCGGCGGGAGGATCTACGTGGCGGGCGGGCACGACAAGCACAAGAACGCGCTCAAGACGGCGGAGGCGTACGACGCCGTGGCGGACGCGTGGGACCCGCTCCCGGACATGTCGGAGGAGCGGGACGAGTGCGACGGGATGGCGACCGTCGCCGGCGACAGGTTCCTCGCCGTGAGCGGGTACCGCACGGCGAGGCAGGGCGGGTTCGAGCGCGACGCCGAGTGGTTCGACCCGGCGGCGCGCGCGTGGCGCCGCCTCGACCGCGTCCGCGCCCCTCCCTCCGCCGCCCAC] consensusID : consensus_13830#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence [AAAAAAAGAGAAAAAAATCAGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGCGCGACGCCGGCGGNTCCGTTCGGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTTGGAGGAGCGCGGCGGCGACGCCGCGTTTCGCCATGGNGCGCGCCGAGGCGGGCGCCAACGAGATTTTGGTTTACTTCTCCANTTCGCGAACCCCGCGGCGGCCGCCACCGCGGTTGGACTCCANTTTTTGT] [+] EMBL C99083 [AAAAAAAGAGAAAAAAATCAGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGCGCTAGAGCGCGACGCCGGCGGNTCCGTTCGGAGCACGTCGAGCTCATCCCGGGGATGCCCGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCGGCGCGTGTGCCGCGGGTTGGAGGAGCGCGGCGGCGACGCCGCGTTTCGCCATGGNGCGCGCCGAGGCGGGCGCCAACGAGATTTTGGTTTACTTCTCCANTTCGCGAACCCCGCGGCGGCCGCCACCGCGGTTGGACTCCANTTTTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13830#0 GCAGCAAAAAAAAGAGAAAAAAATCAGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGC 60 consensus_13830#1 ------AAAAAAAGAGAAAAAAATCAGAGAAAAAAAAATGAGGAGCCCGAGGAGCCGTGC 54 ****************************************************** consensus_13830#0 GCTAGAGCGCGACGCCGGCGGCGTCGCCGTCGAGCACGTCGAGCTCATCCCGGGGATGCC 120 consensus_13830#1 GCTAGAGCGCGACGCCGGCGGNTCCGTT-CGGAGCACGTCGAGCTCATCCCGGGGATGCC 113 ********************* ** ***************************** consensus_13830#0 CGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCG 180 consensus_13830#1 CGACGACGTCGCCGTCGACTGCCTGGCGCGCGTCCCGCACGGGGCTCACCGGGCGATGCG 173 ************************************************************ consensus_13830#0 GCGCGTGTGCCGCGGGT-GGAGGAGCGCGGCGGCGACGCCCGCGTTCGCCATGGCGCGCG 239 consensus_13830#1 GCGCGTGTGCCGCGGGTTGGAGGAGCGCGGCGGCGACGCCGCGTTTCGCCATGGNGCGCG 233 ***************** ********************** ********** ***** consensus_13830#0 CCGAGGCGGGCGCCAACGAGGATTTGGTTTACCTGCTCCAGTTCGCGAACCCCGCGGCGG 299 consensus_13830#1 CCGAGGCGGGCGCCAACGAGATTTTGGTTTACTT-CTCCANTTCGCGAACCCCGCGGCGG 292 ******************** ********** * ***** ******************* consensus_13830#0 CCGCGGCGGCCGCGGAGGAGGCGAAGGAGGACGGCGACGCGCCGGCGAACTCCCCGGCGT 359 consensus_13830#1 CCGCCACCGCGGTTG--GACTCCANTTTTTGT---------------------------- 322 **** * ** * * ** * * consensus_13830#0 ACGGGGTGGCGGTGTACAACGTGACGACGGGGGAGTGGAGGCGGGAGAAGGCGGCGCCGC 419 consensus_13830#1 ------------------------------------------------------------ consensus_13830#0 CGGTGCCCATGTTCGCGCAGTGCGCCGCGGTGGGGACGCGCCTGGCGGTGCTCGGCGGGT 479 consensus_13830#1 ------------------------------------------------------------ consensus_13830#0 GGGACCCCGAGACGTTCGAGCCCGTGGCGGACGTCCACGTGCTCGACGCCTCCACCGGCG 539 consensus_13830#1 ------------------------------------------------------------ consensus_13830#0 TGTGGCGGAGCGCGCCGCCGATGCGGTCGGCGAGGTCCTTCTTCGCGTGCGCGGAGGCCG 599 consensus_13830#1 ------------------------------------------------------------ consensus_13830#0 GCGGGAGGATCTACGTGGCGGGCGGGCACGACAAGCACAAGAACGCGCTCAAGACGGCGG 659 consensus_13830#1 ------------------------------------------------------------ consensus_13830#0 AGGCGTACGACGCCGTGGCGGACGCGTGGGACCCGCTCCCGGACATGTCGGAGGAGCGGG 719 consensus_13830#1 ------------------------------------------------------------ consensus_13830#0 ACGAGTGCGACGGGATGGCGACCGTCGCCGGCGACAGGTTCCTCGCCGTGAGCGGGTACC 779 consensus_13830#1 ------------------------------------------------------------ consensus_13830#0 GCACGGCGAGGCAGGGCGGGTTCGAGCGCGACGCCGAGTGGTTCGACCCGGCGGCGCGCG 839 consensus_13830#1 ------------------------------------------------------------ consensus_13830#0 CGTGGCGCCGCCTCGACCGCGTCCGCGCCCCTCCCTCCGCCGCCCAC 886 consensus_13830#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||