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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13831#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 971 fasta sequence
[CCCATCGCCGCGGCGGCCTATCCATCTCTCTCCCCCGCACACGCTCTCCCTCCCATGGCGCTCTCCCTCACCACCGCCTTCTCCCACCTCTCCCTCCCCTCCACCTCCAAGTTCCACCCGCTCCCCCTCCTCCACCTCCGCTTCCCCTCCTCCTCCTCCTCCCGCCGCGCCGCGCGCC-TCGCGCTCGCCGCCTCCGCCGCCGAGGCCGCCGAGCCTGTCGAGGTGGAGGAGGCGCCCGCCGA-GGACGGGGCGGATGAGGTGGTGGCCGTGGAGGACGAGCTGTCCGGACCGGCGCTGCGAAAGTACGTGAAGCAGCGGCTTCCCGGGGGCTTCGCGGCGCAGCGGATCACCGCCACGGGCCGCCGCAAGACGGCCATCGCCCGCGTCGTGCTCCAGGAGGGCACCGGAAGGGTGTTCATCAACTTCCGCGATGCCAAGGAGTATTTGCAAGGAAATCCAATGTGGATGGAGTACTGCAAGGTACCCCTGGTGACCCTAGGGTTCGAGAACAGCTACGACGTCTTCGTCAAAGTTCACGGGGGTGGTCTCTCGGGCCAAGCCCAGGCCATTTGCCTCGGCGTCGCCCG-TG-CACTGGTGAAGA-TCA-GCACC-GC-AA-ACAAAGTTACTCTGAGGGG-AGAA-GGTTTGCTGACAAGAGACACCCGTATAGTTGAAAGGAAGAAGGCTGGTCTTAAGAAGGCACGCAAGCGCCCGCAGTTCTCAAAGCGTTAGAGTATGCACAACCTTGTTGTTAGACTCATTTAAAAGTTTTACATTCCACAGTTTGTATTGGCCCTTCTCTGTTATTTTCTGTGCAAATTATGTGCTCCTCACCACAGACTTGTAATCTTCGTTCTCTGTAAGCAATTTTATTGAGGTCACAAAAGGCAATTATCTTGAAATCATTCCTGATATCTGATGAGAACAAAAGCTCAACTTTACATCCTCATATAGTCACATAAGACAATTAAAAAAAA]
[+] EMBL AK068283 [CCCATCGCCGCGGCGGCCTATCCATCTCTCTCCCCCGCACACGCTCTCCCTCCCATGGCGCTCTCCCTCACCACCGCCTTCTCCCACCTCTCCCTCCCCTCCACCTCCAAGTTCCACCCGCTCCCCCTCCTCCACCTCCGCTTCCCCTCCTCCTCCTCCTCCCGCCGCGCCGCGCGCC TCGCGCTCGCCGCCTCCGCCGCCGAGGCCGCCGAGCCTGTCGAGGTGGAGGAGGCGCCCGCCGA GGACGGGGCGGATGAGGTGGTGGCCGTGGAGGACGAGCTGTCCGGACCGGCGCTGCGAAAGTACGTGAAGCAGCGGCTTCCCGGGGGCTTCGCGGCGCAGCGGATCACCGCCACGGGCCGCCGCAAGACGGCCATCGCCCGCGTCGTGCTCCAGGAGGGCACCGGAAGGGTGTTCATCAACTTCCGCGATGCCAAGGAGTATTTGCAAGGAAATCCAATGTGGATGGAGTACTGCAAGGTACCCCTGGTGACCCTAGGGTTCGAGAACAGCTACGACGTCTTCGTCAAAGTTCACGGGGGTGGTCTCTCGGGCCAAGCCCAGGCCATTTGCCTCGGCGTCGCCCG TG CACTGGTGAAGA TCA GCACC GC AA ACAAAGTTACTCTGAGGGG AGAA GGTTTGCTGACAAGAGACACCCGTATAGTTGAAAGGAAGAAGGCTGGTCTTAAGAAGGCACGCAAGCGCCCGCAGTTCTCAAAGCGTTAGAGTATGCACAACCTTGTTGTTAGACTCATTTAAAAGTTTTACATTCCACAGTTTGTATTGGCCCTTCTCTGTTATTTTCTGTGCAAATTATGTGCTCCTCACCACAGACTTGTAATCTTCGTTCTCTGTAAGCAATTTTATTGAGGTCACAAAAGGCAATTATCTTGAA ]
[+] EMBL AK104434 [ CCGCGGCGGCCTATCCATCTCTCTCCCCCGCACACGCTCTCCCTCCCATGGCGCTCTCCCTCACCACCGCCTTCTCCCACCTCTCCCTCCCCTCCACCTCCAAGTTCCACCCGCTCCCCCTCCTCCACCTCCGCTTCCCCTCCTCCTCCTCCTCCCGCCGCGCCGCGCGCC TCGCGCTCGCCGCCTCCGCCGCCGAGGCCGCCGAGCCTGTCGAGGTGGAGGAGGCGCCCGCCGA GGACGGGGCGGATGAGGTGGTGGCCGTGGAGGACGAGCTGTCCGGACCGGCGCTGCGAAAGTACGTGAAGCAGCGGCTTCCCGGGGGCTTCGCGGCGCAGCGGATCACCGCCACGGGCCGCCGCAAGACGGCCATCGCCCGCGTCGTGCTCCAGGAGGGCACCGGAAGGGTGTTCATCAACTTCCGCGATGCCAAGGAGTATTTGCAAGGAAATCCAATGTGGATGGAGTACTGCAAGGTACCCCTGGTGACCCTAGGGTTCGAGAACAGCTACGACGTCTTCGTCAAAGTTCACGGGGGTGGTCTCTCGGGCCAAGCCCAGGCCATTTGCCTCGGCGTCGCCCG TG CACTGGTGAAGA TCA GCACC GC AA ACAAAGTTACTCTGAGGGG AGAA GGTTTGCTGACAAGAGACACCCGTATAGTTGAAAGGAAGAAGGCTGGTCTTAAGAAGGCACGCAAGCGCCCGCAGTTCTCAAAGCGTTAGAGTATGCACAACCTTGTTGTTAGACTCATTTAAAAGTTTTACATTCCACAGTTTGTATTGGCCCTTCTCTGTTATTTTCTGTGCAAATTATGTGCTCCTCACCACAGACTTGTAATCTTCGTTCTCTGTAAGCAATTTTATTGAGGTCACAAAAGGC ]
[+] EMBL CF325025 [ ggcacgaggCTCCCCCGCACACGCTCTCCCTCCCATGGCGCTCTCCCTCACCACCGCCTTCTCCCACCTCTCCCTCCCCTCCACCTCCAAGTTCCACCCGCTCCCCCTCCTCCACCTCCGCTTCCCCTCCTCCTCCTCCTCCCGCCGCGCCGCGCGCC TCGCGCTCGCCGCCTCCGCCGCCGAGGCCGCCGAGCCTGTCGAGGTGGAGGAGGCGCCCGCCGA GGACGGGGCGGATGAGGTGGTGGCCGTGGAGGACGAGCTGTCCGGACCGGCGCTGCGAAAGTACGTGAAGCAGCGGCTTCCCGGGGGCTTCGCGGCGCAGCGGATCACCGCCACGGGCCGCCGCAAGACGGCCATCGCCCGCGTCGTGCTCCAGGAGGGCACCGGAAGGGTGTTCATCAACTTCCGCGATGCCAAGGAGTATTTGCAAGGAAATCCAATGTGGATGGAGTACTGCAAGGTACCCCTGGTGACCCTAGGGTTCGAGAACAGCTACGACGT ]
[+] EMBL AB022675 [ GGCGCTCTCCCTCACCACCGCCTTCTCCCACCTCTCCCTCCCCTCCACCTCCAAGTTCCACCCGCTCCCCCTCCTCCACCTCCGCTTCCCCTCCTCCTCCTCCTCCCGCCGCGCCGCGCGCC TCGCGCTCGCCGCCTCCGCCGCCGAGGCCGCCGAGCCTGTCGAGGTGGAGGAGGCGCCCGCCGA GGACGGGGCGGATGAGGTGGTGGCCGTGGAGGACGAGCTGTCCGGACCGGCGCTGCGAAAGTACGTGAAGCAGCGGCTTCCCGGGGGCTTCGCGGCGCAGCGGATCACCGCCACGGGCCGCCGCAAGACGGCCATCGCCCGCGTCGTGCTCCAGGAGGGCACCGGAAGGGTGTTCATCAACTTCCGCGATGCCAAGGAGTATTTGCAAGGAAATCCAATGTGGATGGAGTACTGCAAGGTACCCCTGGTGACCCTAGGGTTCGAGAACAGCTACGACGTCTTCGTCAAAGTTCACGGGGGTGGTCTCTCGGGCCAAGCCCAGGCCATTTGCCTCGGCGTCGCCCG TG CACTGGTGAAGA TCA GCACC GC AA ACAAAGTTACTCTGAGGGG AGAA GGTTTGCTGACAAGAGACACCCGTATAGTTGAAAGGAAGAAGGCTGGTCTTAAGAAGGCACGCAAGCGCCCGCAGTTCTCAAAGCGTTAGAGTATGCACAACCTTGTTGTTAGACTCATTTAAAAGTTTTACATTCCACAGTTTGTATTGGCCCTTCTCTGTTATTTTCTGTGCAAATTATGTGCTCCTCACCACAGACTTGTAATCTTCGTTCTCTGTAAGCAATTTTATTGAGGTCACAAAAGGCAATTATCTTGAAAT ]
[+] EMBL OSS2771A [ CCCTCCCCTCCACCTCCAAGTTCCACCCTCTCCCCCTCCTCCACCTCCGCTTCCCCTCCTCCTCCTCCTCCCGCCGCGCCGCGCGCC TCGCGTNCGCNGNCTCCGCCGCCGAGGCCGCCGAGCCTGTNGAGGTGGAGGAGGCGCCCGCCGA GGACGGGGCGGATGAGGTGGTGGCCGTGGAGGACGAGCTGTCCGGACCGGTGCTGCGAAAGTACGTAAAGCAGCGGCTTCCCGGGGGCTTCGCGGCGCA NGGATCACCGCCACGGGCCGCCGCAAGACGGCCATCG CCGTTTCGTGCTCCAGGAGGG ]
[+] EMBL OSS2865A [ CCCTCCCCTCCACCTCCAAGTTCCACCCTCTCCCCCTCCTCCACCTCCGCTTCCCCTCCTCCTCCTCCTCCCGNCGCGTCGCGCNNC TCGCNNTCGNCGCCTCCGCCGCCGAGGTCGCCGAGCCTGTCGAGGTGGAGGAGGCGCCCGCCGA GGACGGGGCGGATGAGGTGGTGGCCGTGGAGGACGAGCTGTCCGGACCGGCGCTGCGAAAGTACGTGAAGCAGCGGCTTCCCGGGGNCT ]
[+] EMBL OSS3132A [ CCCTCCCCTCCACCTCCAAGTTCCACCCTCTCCCCCTCCTCCACCTCCGCTTCCCCTCCTCCTCCTCCTCCCGCCGCGCCGCGCGCCTTCGCGGTCGCGGNCTCCGCCGCCGAGGCCGCCGAGCCTGTNGAGGTGGAGGAGGCGCCCGCCGA GGACGGGGCGGATNAGGTGGTGGCCGTGGAGGACGAGCTGTCCGGACCGGGGCTGC ]
[+] EMBL BE230766 [ taCAAGTTCCACCCGCTCCCCCTCCTACACCTCCGCTTCCCCTCCTCCTCCTCCTCCCGNCGCGCCGCGCGTC TCGYGTTCGCCGTCTCCGCCGCCGAGGCCGCCGAGCCTCTCGAGGTGGAGGAGGCGNCCGCCGAGGGACGGSGCGSATGAGGTGGTGGCCGTAGAGGACGAGCTSTCCGGACCGGCGCTGCGAAAGTACGTGAAGaa ]
[-] EMBL CB650466 [ CGCGCGCC TCGCGCTCGCCGCCTCCGCCGCCGAGGCCGCCGAGCCTGTCGAGGTGGAGGAGGCGCCCGCCGA GGACGGGGCGGATGAGGTGGTGGCCGTGGAGGACGAGCTGTCCGGACCGGCGCTGCGAAAGTACGTGAAGCAGCGGCTTCCCGGGGGCTTCGCGGCGCAGCGGATCACCGCCACGGGCCGCCGCAAGACGGCCATCGCCCGCGTCGTGCTCCAGGAGGGCACCGGAAGGGTGTTCATCAACTTCCGCGATGCCAAGGAGTATTTGCAAGGAAATCCAATGTGGATGGAGTACTGCAAGGTACCCCTGGTGACCCTAGGGTTCGAGAACAGCTACGACGTCTTCGTCAAAGTTCACGGGGGTGGTCTCTCGGGCCAAGCCCAGGCCATTTGCCTCGGCGTCGCCCG TG CACTGGTGAAGA TCA GCACC GC AA ACAAAGTTACTCTGAGGGG AGAA GGTTTGCTGACAAGAGACACCCGTATAGTTGAAAGGAAGAAGGCTGGTCTTAAGAAGGCACGCAAGCGCCCGCAGTTCTCAAAGCGTTAGAGTATGCACAACCTTGTTGTTAGACTCATTTAAAAGTTTTACATTCCACAGTTTGTATTGGCCCTTCTCTGTTATTTTCTGTGCAAATTATGTGCTCCTCACCACAGACTTGTAATCTTCGTTCTCTGTAAGCAAGTTTATTGAGGTCACAAAAGGCAATTATC TGAAAaaaaaaga ]
[+] EMBL AU101965 [ ATCCAATGTGGATGGAGTACTGCAAGGTACCCCTGGTGACCCTAGGGTTCGAGAACAGCTACGACGTCTTCGTCAAAGTTCACGGGGGTGGTCTCTC GGCCAAGCCCAGGCCATTTGCCTC GCGTCGCCCGTTGCCACTGGTGAAGATTCA GCACC GC AA ACAAAGTTACTCTGAGGGGTAGAA GGTTTGCTGACAAGAGACACCCGTATAGTTGAAAGGAAGAAGGCTGGTCTTAAGAAGGCACGCAAGCGCCCGCAGTTCTCAAAGCGTTAGAGTATGCACAACCTTGTTGTTAGACTCATTTAAAAGTTTTACATTCCACAGTTTGTATTGGCCCTTCTCTGTTATTTTCTGTGCAAATTATGTGCTCCTCACCACAGACTTGTAATCTTCGTTCTCTGTAAGCAATTTTATTGAGGTCACAAAAGGCAATTATCTTGAAATCATTCCTGATATCTGATGAGAACAAAA ]
[+] EMBL CF196069 [ TG CACTGGTGAAGA TCA GCACC GC AA ACAAAGTTACTCTGAGGGG AGAA GGTTTGCTGACAAGAGACACCCGTATAGTCGAAAGGAAGAAGGCTGGTCTTAAGAAGGCACGCAAGCGCCCGCACTTCTCAAAGCGTTAGAGTATGCACAACCTTGTTGTTAGACTCATTTAAATGTTTTACATTCCACAGTTTGTATTGGCCCTTCTCTGTCATTTTCTGTGCAAATTATGTGCTCCTCACCACAGACTTGTAATCTTCGTTCTCTGTAAGCAATTTTATTGAGGTCACAAAAGGCAATTATCTTGAAATCATTCCTGATATCTGATGAGAACAGCTGCTCAACTTTACATCCTCATATAGTCACATAAGACAATTAAAAAAAA]
[+] EMBL AU097189 [ CTGGTGAAGA TCATGCACCTGCTAANACAAAGTTACTCTGAGGGG AGAANGGTTTGCTGACAAGAGACACCCGTATAGTTGAAAGGAAGAAGGCTGGTCTTAAGAAGGCACGCAAGCGCCCGCAGTTCTCAAAGCGTTAGAGTATGCACAACCTTGTTGTTAGACTCATTTAAAAGTTTTACATTCCACAGTTTGTATTGGCCCTTCTCTGTTATTTTCTGTGCAAATTATGTGCTCCTCACCACAGACTTGTAATCTTCGTTCTCTGTAAGCAATTTTATTGAGGTCACAAAAGGCAATTATCTTGAAATCATTCCTGATATCTGATGAGAACAAAAa ]
[+] EMBL AK060503 [ AGAGTATGCACAACCTTGTTGTTAGACTCATTTAAAAGTTTTACATTCCACAGTTTGTATTGGCCCTTCTCTGTTATTTTCTGTGCAAATTATGTGCTCCTCACCACAGACTTGTAATCTTCGTTCTCTGTAAGCAATTTTATTGAGGTCACAAAAGGCAATTATCTTGAAAT ]
consensusID : consensus_13831#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence
[CCATCCCCTCCACCTCCAAGTTCCACCCTNNCCCCCTCCTCCACCTCCGNTTCCCCTCCTCCTCCTCCTCCCGNCGCGCCGCGCGAATCGNGTACGACGCCTCCGCCGCCGAGGACGACGAGCCTGTCGAGGTGGAGGAGGCGCCCGCCGAGGACGAGGCGGATGAGGTGNTGGCCGTGGAGGACGAGCTGTCCGGACCGNCGNTGCGAAAGTACGTGAAGCAGCGGNTTCCCGGGGGCTTCGCGNCGCAGGGAATC]
[+] EMBL OSS3411A [CCATCCCCTCCACCTCCAAGTTCCACCCTNNCCCCCTCCTCCACCTCCGNTTCCCCTCCTCCTCCTCCTCCCGNCGCGCCGCGCGAATCGNGTACGACGCCTCCGCCGCCGAGGACGACGAGCCTGTCGAGGTGGAGGAGGCGCCCGCCGAGGACGAGGCGGATGAGGTGNTGGCCGTGGAGGACGAGCTGTCCGGACCGNCGNTGCGAAAGTACGTGAAGCAGCGGNTTCCCGGGGGCTTCGCGNCGCAGGGAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13831#0 CCCATCGCCGCGGCGGCCTATCCATCTCTCTCCCCCGCACACGCTCTCCCTCCCATGGCG 60
consensus_13831#1 ------------------------------------------------------------
consensus_13831#0 CTCTCCCTCACCACCGCCTTCTCCCACCTCTCCCTCCCCTCCACCTCCAAGTTCCACCCG 120
consensus_13831#1 -------------------------------CCATCCCCTCCACCTCCAAGTTCCACCCT 29
** *************************
consensus_13831#0 CTCCCCCTCCTCCACCTCCGCTTCCCCTCCTCCTCCTCCTCCCGCCGCGCCGCGCGCCTC 180
consensus_13831#1 NNCCCCCTCCTCCACCTCCGNTTCCCCTCCTCCTCCTCCTCCCGNCGCGCCGCGCGAATC 89
****************** *********************** *********** **
consensus_13831#0 GCGCTCGCCGCCTCCGCCGCCGAGGCCGCCGAGCCTGTCGAGGTGGAGGAGGCGCCCGCC 240
consensus_13831#1 GNGTACGACGCCTCCGCCGCCGAGGACGACGAGCCTGTCGAGGTGGAGGAGGCGCCCGCC 149
* * ** ***************** ** *******************************
consensus_13831#0 GAGGACGGGGCGGATGAGGTGGTGGCCGTGGAGGACGAGCTGTCCGGACCGGCGCTGCGA 300
consensus_13831#1 GAGGACGAGGCGGATGAGGTGNTGGCCGTGGAGGACGAGCTGTCCGGACCGNCGNTGCGA 209
******* ************* ***************************** ** *****
consensus_13831#0 AAGTACGTGAAGCAGCGGCTTCCCGGGGGCTTCGCGGCGCAGCGGATCACCGCCACGGGC 360
consensus_13831#1 AAGTACGTGAAGCAGCGGNTTCCCGGGGGCTTCGCGNCGCAGGGAATC------------ 257
****************** ***************** ***** * ***
consensus_13831#0 CGCCGCAAGACGGCCATCGCCCGCGTCGTGCTCCAGGAGGGCACCGGAAGGGTGTTCATC 420
consensus_13831#1 ------------------------------------------------------------
consensus_13831#0 AACTTCCGCGATGCCAAGGAGTATTTGCAAGGAAATCCAATGTGGATGGAGTACTGCAAG 480
consensus_13831#1 ------------------------------------------------------------
consensus_13831#0 GTACCCCTGGTGACCCTAGGGTTCGAGAACAGCTACGACGTCTTCGTCAAAGTTCACGGG 540
consensus_13831#1 ------------------------------------------------------------
consensus_13831#0 GGTGGTCTCTCGGGCCAAGCCCAGGCCATTTGCCTCGGCGTCGCCCGTGCACTGGTGAAG 600
consensus_13831#1 ------------------------------------------------------------
consensus_13831#0 ATCAGCACCGCAAACAAAGTTACTCTGAGGGGAGAAGGTTTGCTGACAAGAGACACCCGT 660
consensus_13831#1 ------------------------------------------------------------
consensus_13831#0 ATAGTTGAAAGGAAGAAGGCTGGTCTTAAGAAGGCACGCAAGCGCCCGCAGTTCTCAAAG 720
consensus_13831#1 ------------------------------------------------------------
consensus_13831#0 CGTTAGAGTATGCACAACCTTGTTGTTAGACTCATTTAAAAGTTTTACATTCCACAGTTT 780
consensus_13831#1 ------------------------------------------------------------
consensus_13831#0 GTATTGGCCCTTCTCTGTTATTTTCTGTGCAAATTATGTGCTCCTCACCACAGACTTGTA 840
consensus_13831#1 ------------------------------------------------------------
consensus_13831#0 ATCTTCGTTCTCTGTAAGCAATTTTATTGAGGTCACAAAAGGCAATTATCTTGAAATCAT 900
consensus_13831#1 ------------------------------------------------------------
consensus_13831#0 TCCTGATATCTGATGAGAACAAAAGCTCAACTTTACATCCTCATATAGTCACATAAGACA 960
consensus_13831#1 ------------------------------------------------------------
consensus_13831#0 ATTAAAAAAAA 971
consensus_13831#1 -----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||