These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13837#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1681 fasta sequence [AATCCTGTTGGCAACAATTAATAGGAAAGAGCTTTTTGTTAAGAGATCAGAAGATGTCATCGACACCTGCAGCTAATTTCTCCAATGAAGACGATGAGCGAAAGGCTCCTACCGGCTTCCACCCCAGCCTCTGGGGCGATTTCTTCATCAGTTACCAGCCACCTACTGCACCTAAGCATGCTTACATGAAAGAAAGGGCTGAAGTGCTAAAAGAAGAAGTTAGAAAGGTAGTAAAGGGCTCAAATGAAGTACCAGAGATATTGGATCTTGTGATCACGCTGCAACGACTTGGATTGGATAGTTACTACAAGGCCGAGATAGATGAGCTTCTCTGCACTGTTTACAGCACCGACTACAACGATAAAGATTTACACCTAGTTTCTCTTCGATTTTATCTTCTACGGAAGAACGGCTATGATGTGTCATCTGACATATTTCAACATTTTAAAGACAAAGAGGGGAGTTTTGTTGTTGATGACACAAGAAGTCTTTTAAGCTTATATAATGCGGCATATATGAGGACTCATGGTGAAACAGTACTTGATGAAGCAGTTGTTTTCACTAGTAACCGCCTAAGATCCGAATTGAAACATTTGAAATCTCCAGTAGCCGATGAAGTGTCTCTCGCTCTTGATACACCACTATTCCGGAGGGTTAGAATAATAGAAACACGAAACTATATTCCTATTTATGAAAGCGCGACTACACGAAATGAAGCCATATTAGAATTTGCAAAGTTGAATTTCAATCTCCTTCAACTTATTTATTGTGAGGAGTTAAAAACTATCACACGATGGTGGAAAGAGCTTAACGTTGAATCCAACTTAAGATTCATTCGGGATAGAATAGTGGAAATGCATTTTTGGATGACAGGAGCATGCTCGGAGCCCCATTATTCTCTTTTACGAATTATACTTACAAAGATGACAGCATTTATCACCATTCTAGATGATATATTTGATACATATGCTACAACCGAGGAGAGCATGATGCTTGCCAAAGCGATATATATGTGCAATGAATCTGCAACAGTTCTACTTCCAAAATACATGAAGGATTTCTACTTATATTATTTAAAGACATTTGATTCATTTGAAGAGGCACTAGGTCCAAACAAAAGTTATCGAGTGCTTTATTTCAAAGAGCTGCGTGAACAAGCAGGGGACCACTATGCTTCCACAATTCAGTGTTACATGCTGCAGCATGGTACAACAATACATGAAGCATGCATTGGGATAAAGGAGTTGATAGAAGATTCGTGGAAGGATATGATGAAAGAATACCTTGCACCAACAAACCTTCAGCCAAAAATCGTGGCAAGAACAGTTATTGATTTTGCACGAACTGGGGATTATATATACAAGCAAGCAGATTCATTCACCTTTTCACATACAATCAAGGATATGATAGCATCACTTTACGTTGAGCCATATAGCATTTAAATCACCACACGCATTTACATTATAAATATTATATTATCAAGTAAGGAGTTTCACAATTGTAACAAATATTAATTAGTTTTCAATAATGTGATGGTGGCTGCTGATCATGAAAC-CATCGTTAGTTAAGCTTCATTAGAAAGTTTCCATGGTTAAAGAATTGTTTTTCCTTATCTCGTTGTCACAGATATTATGTGCAATATTCTCCCCGCCAGTAATAAGATATATACTAATTGCTCAAA] [+] EMBL CB620992 [AATCCTTTAGGCGACAATTAATAGGAAAGAGCTTTTTGTTAAGAGATCAGAAGATGTCATCGACACCTGCAGCTAATTTCTCCAATGAAGACGATGAGCGAAAGGCTCCTACCGGCTTCCACCCCAGCCTCTGGGGCGATTTCTTCATCAGTTACCAGCCACCTACTGCACCTAAGCATGCTTACATGAAAGAAAGGGCTGAAGTGCTAAAAGAAGAAGTTAGAAAGGTAGTAAAGGGCTCAAATGAAGTACCAGAGATATTGGATCTTGTGATCACGCTGCAACGACTTGGATTGGATAGTTACTACAAGGCCGAGATAGATGAGCTTCTCTGCACTGTTTACAGCACCGACTACAACGATAAAGATTTACACCTAGTTTCTCTTCGATTTTATCTTCTACGGAAGAACGGCTATGATGTGTCATCTGACATATTTCAACATTTTAAAGACAAAGAGGGGAGTTTTGTTGTTGATGACACAAGAAGTCTTTTAAGCTTATATAATGCGGCATATATGAGGACTCATGGTGAAACAGTACTTGATGAAGCAGTTGTTTTCACTAGTAACCGCCTAAGATCCGAATTGAAACATTTGAAATCTCCAGTAGCCGATGAAGTGTCTCTCGCTCTTGATACACCACTATTCCGGAGGGTTAGAATAATAGAAACACGAAACTATATTCCTATTTATGAAAGCGCGACTACACGAAATGAAGCCATATTAGAATTTGCAAAGTTGAATTTCAATCTCCTTCAACTTATTTATTGTGAGGAGTT AAAACTATCACACGATGGTGGAAAGAG ] [+] EMBL CB620824 [AATCATGTTGGCAACAATTAATAGGAAAGAGCTTTTTGTTAAGAGATCAGAAGATGTCATCGACACCTGCAGCTAATTTCTCCAATGAAGACGATGAGCGAAAGGCTCCTACCGGCTTCCACCCCAGCCTCTGGGGCGATTTCTTCATCAGTTACCAGCCACCTACTGCACCTAAGCATGCTTACATGAAAGAAAGGGCTGAAGTGCTAAAAGAAGAAGTTAGAAAGGTAGTAAAGGGCTCAAATGAAGTACCAGAGATATTGGATCTTGTGATCACGCTGCAACGACTTGGATTGGATAGTTACTACAAGGCCGAGATAGATGAGCTTCTCTGCACTGTTTACAGCACCGACTACAACGATAAAGATTTACACCTAGTTTCTCTTCGATTTTATCTTCTACGGAAGAACGGCTATGATGTGTCATCTGACATATTTCAACATTTTAAAGACAAAGAGGGGAGTTTTGTTGTTGATGACACAAGAAGTCTTTTAAGCTTATATAATGCGGCATATATGAGGACTCATGGTGAAACAGTACTTGATGAAGCAGTTGTTTTCACTAGTAACCGCCTAAGATCCGAATTGAAACATTTGAAATCTCCAGTAGCCGATGAAGTGTCTCTCGCTCTTGATACACCACTATTCCGGAGGGTTAGAATAATAGAAACACGAAACTATATTCCTATTTATGAAAGCGCGACTACACGAAATGAAGCCATATTAGAATTTGCAAAGTTGAATTTCAATCTCCTTCAACTTATTTATTGTGAGGAGTTAAAAACTATCACACGATGGTGGAAAGAGCTTTACGTTGAAT ] [+] EMBL CB620896 [aactCTGTTGGCAACAATTAATAGGAAAGAGCTTTTTGTTAAGAGATCAGAAGATGTCATCGACACCTGCAGCTAATTTCTCCAATGAAGACGATGAGCGAAAGGCTCCTACCGGGTTCCACCCCAGCCTCTGGGGCGATTTCTTCATCAGTTACCAGCCACCTACTGCACCTAGGCATGCTTACATGAAAGAAAGGGCTGAAGTGCTAAAAGAAGAAGTTAGAAAGGTAGTAAAGGGCTCAAATGAAGTACCAGAGATATTGGATCTTGGGATCACGCTGCAACGACTTGGATTGGATAGTTACTACGAGGCCGAGATAGATGAGCTTCTCTGCACTGTTTACAGCACCGACTACAACGATAGAGATTTACACCTAGTTTCTCTTCGATTTTATCTTCTACGGAAGAACGGCTATGATGTGTCATCTGACATATTTCAACATTTTAAAGACAAAGAGGGGAGTTTTGTTGTTGATGACACAAGAAGTCTTTTAAGCTTATATAATGCGGCATATATGAGGACTCATGGTGAAACAGTACTTGATGAAGCAGTTGTTTTCACTAGTAACCGCCTAAGATCCGAATTGAAACATTTGAAATCTCCAGTAGCCGATGAAGTGTCTCTCGCTCTTGATACACCACTATTCCGGAGGGTTAGAATAATAGAAACACGAAACTATATTCCTATTTATGAAAGCGCGACTACACGAAATGAAGCCATATTAGAATTTGCAAAGTTGAATTTCAATCTCCTTCAACTTATTT ] [+] EMBL CB620713 [aattagGTTGGCAACAATTAATAGGAAAGAGCTTTTTGTTAAGAGATCAGAAGATGTCATCGACACCTGCAGCTAATTTCTCCAATGAAGACGATGAGCGAAAGGCTCCTACCGGCTTCCACCCCAGCCTCTGGGGCGATTTCTTCATCAGTTACCAGCCACCTACTGCACCTAAGCATGCTTACATGAAAGAAAGGGCTGAAGTGCTAAAAGAAGAAGTTAGAAAGGTAGTAAAGGGCTCAAATGAAGTACCAGAGATATTGGATCTTGTGATCACGCTGCAACGACTTGGATTGGATAGTTACTACAAGGCCGAGATAGATGAGCTTCTCTGCACTGTTTACAGCACCGACTACAACGATAAAGATTTACACCTAGTTTCTCTTCGATTTTATCTTCTACGGAAGAACGGCTATGATGTGTCATCTGACATATTTCAACATTTTAAAGACAAAGAGGGGAGTTTTGTTGTTGATGACACAAGAAGTCTTTTAAGCTTATATAATGCGGCATATATGAGGACTCATGGTGAAACAGTACTTGATGAAGCAGTTGTTTTCACTAGTAACCGCCTAAGATCCGAATTGAAACATTTGAAATCTCCAGTAGCCGATGAAGTGTCTCTCGCTCTTGATACACCACTATTCCGGAGGGTTAGAATAATAGAAACACGAAACTATATTCCTATTTATGAAAGCGCGACTACACGAAATGAAGCCATATTAGAATTTGCAAAGTTGAATTTCAATCTCCTTCAACTTATTTATTGTGAGGAGTTAAAAACTATCACACGATGGTGGAAAGAGCTTAACGTTGAATCCAACTTn ] [+] EMBL CB620649 [ AATCAATAGGAAAGAGCTTTTTGTTAAGAGATCAGAAGATGTCATCGACACCTGCAGCTAATTTCTCCAATGAAGACGATGAGCGAAAGGCTCCTACCGGCTTCCACCCCAGCCTCTGGGGCGATTTCTTCATCAGTTACCAGCCACCTACTGCACCTAAGCATGCTTACATGAAAGAAAGGGCTGAAGTGCTAAAAGAAGAAGTTAGAAAGGTAGTAAAGGGCTCAAATGAAGTACCAGAGATATTGGATCTTGTGATCACGCTGCAACGACTTGGATTGGATAGTTACTACAAGGCCGAGATAGATGAGCTTCTCTGCACTGTTTACAGCACCGACTACAACGATAAAGATTTACACCTAGTTTCTCTTCGATTTTATCTTCTACGGAAGAACGGCTATGATGTGTCATCTGACATATTTCAACATTTTAAAGACAAAGAGGGGAGTTTTGTTGTTGATGACACAAGAAGTCTTTTAAGCTTATATAATGCGGCATATATGAGGACTCATGGTGAAACAGTACTTGATGAAGCAGTTGTTTTCACTAGTAACCGCCTAAGATCCGAATTGAAACATTTGAAATCTCCAGTAGCCGATGAAGTGTCTCTCGCTCTTGATACACCACTATTCCGGAGGGTTAGAATAATAGAAACACGAAACTATATTCCTATTTATGAAAGCGCGACTACACGAAATGAAGCCATATTAGAATTTGCAAAGTTGAATTTCAATCTCCTTCAACTTATTTATTGTGAGGAGTTAAAAACTATCACACGATGGTGGAAAGAGCTTAACGTTGAATCCAACTTAAGATTCATTCGGGATAGAATAGTGGAAATGCA ] [+] EMBL AK108761 [ CACAAGAAGTCTTTTAAGCTTATATAATGCGGCATATATGAGGACTCATGGTGAAAAAGTACTTGATGAAGCAGTTGTTTTCACTACTAACCGCCTAAGATCAGAATTGAAACATTTGAAATCTCCGGTAGCCGATGAAGTGTCTCTTGCTCTTGATACACCACTATTCCGGAGGGTTAGAATAATAGAAACACAAAACTATATTCCTATTTATGAAAGCGCGACTACACGAAATGAAGCCATATTAGAATTTGCAAAGTTGAATGTCAATCTCCTTCAACTTATTTATTGTGAGGAGTTAAAAACTATCACACGATGGTGGAAAGAGCTTAACGTTGAATCCAACTTAAGCTTCATTCGGGATAGAATAGTGGAAATGCATTTTTGGATGACAGGAGCATGCTCGGAGCCCCATTATTCTCTTTTACGAATTATACTTACAAAGATGACAGCATTTATCACCATTCTAGATGATATATTTGATACATATGCTACAACCGAGGAGAGCATGATGCTTGCCAAAGCGATATATATGTGCAATGAATCTGCAACAGTTCTACTTCCAAAATACATGAAGGATTTCTACTTATATTATTTAAAGACATTTGATTCATTTGAAGAGGCACTAGGTCCAAACAAAAGTTATCGAGTGCTTTATTTCAAAGAGCTGCGTGAACAAGCAGGGGACCACTATGCTTCCACAATTCAGTGTTACATGCTGCAGCATGGTACAACAATACATGAAGCATGCATTGGGATAAAGGAGTTGATAGAAGATTCGTGGAAGGATATGATGAAAGAATACCTTGCACCAACAAACCTTCAGCCAAAAATCGTGGCAAGAACAGTTATTGATTTTGCACGAACTGGGGATTATATATACAAGCAAGCAGATTCATTCACCTTTTCACATACAATCAAGGATATGATAGCATCACTTTACGTTGAGCCATATAGCATTTAAATCACCACACGCATTTACATTATAAATATTATATTATCAAGTAAGGAGTTTCACAATTGTAACAAATATTAATTAGTTTTCAATAATGTGATGGTGGCTGCTGATCATGAAAC CATCGTTAGTTAAGCTTCATTAGAAAGTTTCCATGGTTAAAGAATTGTTTTTCCTTA ] [-] EMBL CB620897 [ ACCTTTTCTCATACAATCAAGGATATGATAGCATCGCTTTACGTTGAGCCATATAGCATTTAAATCGCCGCGGGCATTTACATTATAAATATTATATTATCAAGTAAGGAGTTTCACAATTGTAACAAATATTAATTAGTTTTCAATAATGTGATGGTGGCTGCTGATCATGAAACTCATCGTTAGTTAAGCTTCATTAGAAAGTTTCCAGGGTTAAAGAATTGTTTTTCCTTATCTCGTTGTCACAGATATTATGTGCAATATTCTCCCCGCCAGTAATAAGATATATACTAATTGCTCAAA] consensusID : consensus_13837#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 816 fasta sequence [TCATTGGAAGAAGCACTATGTCCAAACAAAAGTTATCGAGTGTGTTATCTCAAAGAGTTGTTCAAGAGGTTAGTTCAAGAATTCTCTCAAGAGATAAAATGGCGTGATGATCATTACATTCCAAAAACAATAGAGGAACACCTGGAACATTCAAGAAAGACTGTTGGTGCCTTTGAACTAGCATGTGCTTCTTTTGTTGGGATGGGCGACCTTGTAGCAAAGGAAACTCTTGATTGCCTTTTGACTTATCCAGAACTTCTTAAGTCTTTCACAACATGTGTACGGCTCTCAAATGATATTGCTTCAACAAAGCGTGAACAAGCAGGGGACCACCACCATGCTTCTACAATTCAGAGTTATATGCTCCAACATGGTGCAACAGCGCATGAAGCATGCGTTGGGATAAAGGAGTTGATAGAAGACTCATGGAAGGATATGATGAAAGAATACCTTACACCAACAGACCTGCAACCAAAAATCGTGGCAAGAACGGTTATTGATTTTGCGCGAACGGGTGATTATATGTACAAGCAAGTTGATTCATTCACTATTTCACATACAATCAAGGATATGATAGCATCGCTCTATATGGAGCCGTATAACATTTAAATCAAAACATGTATTTACATTATAAATATTATATTATCCAATATAGAGTTTCAAATTGTAATATATATTCACTAGCTTTCAATAATGTGTTGGTGGCTGTTGATCACCAAATAATCATTACTTTCAGCCTCATTAGAAAGTTTCCATGGTTAAGGTAAGAAATGTTTTCCTTAGCTTGTTGTCACAATATTATGTGCAATATACTAA] [-] EMBL CB619208 [TCATTGGAAGAAGCACTATGTCCAAACAAAAGTTATCGAGTGTGTTATCTCAAAGAGTTGTTCAAGAGGTTAGTTCAAGAATTCTCTCAAGAGATAAAATGGCGTGATGATCATTACATTCCAAAAACAATAGAGGAACACCTGGAACATTCAAGAAAGACTGTTGGTGCCTTTGAACTAGCATGTGCTTCTTTTGTTGGGATGGGCGACCTTGTAGCAAAGGAAACTCTTGATTGCCTTTTGACTTATCCAGAACTTCTTAAGTCTTTCACAACATGTGTACGGCTCTCAAATGATATTGCTTCAACAAAGCGTGAACAAGCAGGGGACCACCACCATGCTTCTACAATTCAGAGTTATATGCTCCAACATGGTGCAACAGCGCATGAAGCATGCGTTGGGATAAAGGAGTTGATAGAAGACTCATGGAAGGATATGATGAAAGAATACCTTACACCAACAGACCTGCAACCAAAAATCGTGGCAAGAACGGTTATTGATTTTGCGCGAACGGGTGATTATATGTACAAGCAAGTTGATTCATTCACTATTTCACATACAATCAAGGATATGATAGCATCGCTCTATATGGAGCCGTATAACATTTAAATCAAAACATGTATTTACATTATAAATATTATATTATCCAATATAGAGTTTCAAATTGTAATATATATTCACTAGCTTTCAATAATGTGTTGGTGGCTGTTGATCACCAAATAATCATTACTTTCAGCCTCATTAGAAAGTTTCCATGGTTAAGGTAAGAAATGTTTTCCTTAGCTTGTTGTCACA ] [-] EMBL CB621159 [ TCAAGAGGTTAGTTCAAGAATTCTCTCAAGAGATAAAATGGCGTGATGATCATTTCATTCCAAAAACAATAGAGGAACGCCTGGAACATTCAAGAAAGACTGTTGGTGCCTTTGAACTAGCATGTGCTTCTTTTGTTGGGATGGGCGACCTTGTAGCAAAGGAAACTCTTGCTTGCCTTTTGACTTATCCAGAACTTCTTAAGTCTTTCCCAACATGTGTACGGCTCTCAAATGATATTGCTTCAACAAAGCGTGAACAAGCAGGGGACCCCCACCATGCTTCTACAATTCAGAGTTATATGCTCCAACATGGTGCAACAGCGCATGAAGCATGCGTTGGGATAAAGGAGTTGATAGAAGACTCATGGAAGGATATGATGAAAGAATTCCTTACACCAACAGACCTGCAACCAAAAATCGTGGCAAGAACGGTTATTGATTTTGCGCGAACGGGTGATTATATGTACAAGCAAGTTGATTCATTCATTATTTCACATACAATCAAGGATATGATAGCATCGCTCTATATGGAGCCGTATAACATTTAAATCCAAACATGTATTTACATTATAAATATTATATTATCCAATATAGAGTTTCAAATTGTAATATATATTCCCTAGCTTTCAATAATGTGTTGGTGGCTGTTGATCACCAAATAATCATTACTTTCACCCTCATTAGAAAGTTTCCATGGTTAAAGTAAGAAATGTTTTCCTTAGCTTGTTGTCACAATATTATGTGCAATATACTAA] consensusID : consensus_13837#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 791 fasta sequence [GCAACCATAGAAGAGAGAATTTTAATTTGCTAAGAGATGTCGTCGCCACCTGCAGCTTTCTCCAATGAAGGCGATGAGCAGCCACAGCGAAGGGCTCCTACAAGCTTCCACCCTAGCCTCTGGGGCAATTTCTTCCTCAGTTACCAGCCACCTACTGCGCTTAAGCATGCTTACATGAAAGAACGGGTTCAAGTTGTGAAAGAAGAAGTTAGGAAGGTAGTAAAGGGCTCGAGTGAAGTACCAGAGATATTGGATCTTGTGATCACGCTGCAACGGCTTGGATTGGATAGTTACTACGAGACTGAGATAAACGACCTTCTCTGCATTGTTTACAACACCGACTACAACGATAAAGATTTACACCTAGTTTCTCTTCGATTTTATCTTCTACGAAAGAACGGCTATGATGTGTCATCTGATATGTTTCAACATTTTAAAGACAAAGAGGGGAGTTTTGTTGCTGATGACGTAAGAAGTCTTTTGAGCTTATATAATGCGGCATTTCTGAGGACTCATGGTGAAAAAGTACTTGATGAAGCAATTGTTTTTACAACTAACCGCCTTAGATCCGAATTGGAACATTTGAAATCTCTGGCAGCTGATGAAGTGTCTCTTGCTCTTAATACACCCCTGTTCCGGAGGGTTAGAATATTAGAAATACGAAACTATATTCCTATTTATGAAAGTGCTACTACACGAAACGAATCCATATTAGAATTTGCAAAGTTGAATTTCAATCTCCCTTC-ACTTATTTATTGTGAGGAGCTANAATCTATCACAGGATGGTGGAA] [+] EMBL CB621158 [GCAACCATAGAAGAGAGAATTTTAATTTGCTAAGAGATGTCGTCGCCACCTGCAGCTTTCTCCAATGAAGGCGATGAGCAGCCACAGCGAAGGGCTCCTACAAGCTTCCACCCTAGCCTCTGGGGCAATTTCTTCCTCAGTTACCAGCCACCTACTGCGCTTAAGCATGCTTACATGAAAGAACGGGTTCAAGTTGTGAAAGAAGAAGTTAGGAAGGTAGTAAAGGGCTCGAGTGAAGTACCAGAGATATTGGATCTTGTGATCACGCTGCAACGGCTTGGATTGGATAGTTACTACGAGACTGAGATAAACGACCTTCTCTGCATTGTTTACAACACCGACTACAACGATAAAGATTTACACCTAGTTTCTCTTCGATTTTATCTTCTACGAAAGAACGGCTATGATGTGTCATCTGATATGTTTCAACATTTTAAAGACAAAGAGGGGAGTTTTGTTGCTGATGACGTAAGAAGTCTTTTGAGCTTATATAATGCGGCATTTCTGAGGACTCATGGTGAAAAAGTACTTGATGAAGCAATTGTTTTTACAACTAACCGCCTTAGATCCGAATTGGAACATTTGAAATCTCTGGCAGCTGATGAAGTGTCTCTTGCTCTTAATACACCCCTGTTCCGGAGGGTTAGAATATTAGAAATACGAAACTATATTCCTATTTATGAAAGTGCTACTACACGAAACGAATCCATATTAGAATTTGCAAAGTTGAATTTCAATCTCCCTTC ACTTATTTATTGTGAGGAGCTANAATCTATCACAGGATGGTGGAA] [+] EMBL CB619207 [GCACCTATAGAAGAGAGAATTTTAATTTGCTAAGAGATGTCGTCGCCACCTGCAGCTTTCTCCAATGAAGGCGATGAGCAGCCACAGCGAAGGGCTCCTACAAGCTTCCACCCTAGCCTCTGGGGCAATTTCTTCCTCAGTTACCAGCCACCTACTGCGCTTAAGCATGCTTACATGAAAGAACGGGTTCAAGTTGTGAAAGAAGAAGTTAGGAAGGTAGTAAAGGGCTCGAGTGAAGTACCAGAGATATTGGATCTTGTGATCACGCTGCAACGGCTTGGATTGGATAGTTACTACGAGACTGAGATAAACGACCTTCTCTGCATTGTTTACAACACCGACTACAACGATAAAGATTTACACCTAGTTTCTCTTCGATTTTATCTTCTACGAAAGAACGGCTATGATGTGTCATCTGATATGTTTCAACATTTTAAAGACAAAGAGGGGAGTTTTGTTGCTGATGACGTAAGAAGTCTTTTGAGCTTATATAATGCGGCATTTCTGAGGACTCATGGTGAAAAAGTACTTGATGAAGCAATTGTTTTTACAACTAACCGCCTTAGATCCGAATTGGAACATTTGAAATCTCTGGCAGCTGATGAAGTGTCTCTTGCTCTTAATACACCCCTGTTCCGGAGGGTTAGAATATTAGAAATACGANACTATATTCCTATTTATGAGAGTGCTACTACACGAAACGAATCCATATTAGAATTTGCAAAGTTGAATTTCAATCT CCTTCAACTTATTTATTGTGAGGAGC ] consensusID : consensus_13837#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 740 fasta sequence [TGGCGTGATGATCATTACATTCCAAAAACAATAGAGGAACACCTGGAACTTTCCAGAACGACTGTTGGTGCCTTTCAACTAGCATGTGCTTCTTTAGTTGGGATGGGTGATTTTATAACAGAGGATACTCTCGATTATCTTTTGACTTATCCAAAACTTCTTAAGTCTTACACAACATGTGTACGGCTCTCAAATGATATTGCTTCAACAAAGCGTGAACAAGCAGGGGACCACTATGCTTCCACAATTCAGTGTTACATGCTGCAGCATGGTACAACAATACATGAAGCATGCATTGGGATAAAGGAGTTGATAGAAGATTCGTGGAAGGATATGATGAAAGAATACCTTACACCAACAGACCTGCAACCAAAAATCGTGGCAAGAACGGTTATTGATTTTGCGCGAACGGGTGATTATATGTACAAGCAAGCAGATTCATTCACCTTTTCACATACAATCAAGGATATGATAGCATCACTTTACGTTGAGCCATATAGCATTTAAATCACCACACGCATTTACATTATAAATATTATATTATCAAGTAAGGAGTTTCACAATTGTAACAAATATTAATTAGTTTTCAATAATGTGATGGTGGCTGCTGATCATGAAACCATCGTTAGTTAAGCTTCATTAGAAAGTTTCCATGGTTAAAGAATTGTTTTTCCTTATCTTGTTGTCACAATATTATGTGCAATATTCTCCC-C-GCCAGTAATAAGATATATACTAATTGC] [-] EMBL CB620714 [TGGCGTGATGATCATTACATTCCAAAAACAATAGAGGAACACCTGGAACTTTCCAGAACGACTGTTGGTGCCTTTCAACTAGCATGTGCTTCTTTAGTTGGGATGGGTGATTTTATAACAGAGGATACTCTCGATTATCTTTTGACTTATCCAAAACTTCTTAAGTCTTACACAACATGTGTACGGCTCTCAAATGATATTGCTTCAACAAAGCGTGAACAAGCAGGGGACCACTATGCTTCCACAATTCAGTGTTACATGCTGCAGCATGGTACAACAATACATGAAGCATGCATTGGGATAAAGGAGTTGATAGAAGATTCGTGGAAGGATATGATGAAAGAATACCTTACACCAACAGACCTGCAACCAAAAATCGTGGCAAGAACGGTTATTGATTTTGCGCGAACGGGTGATTATATGTACAAGCAAGCAGATTCATTCACCTTTTCACATACAATCAAGGATATGATAGCATCACTTTACGTTGAGCCATATAGCATTTAAATCACCACACGCATTTACATTATAAATATTATATTATCAAGTAAGGAGTTTCACAATTGTAACAAATATTAATTAGTTTTCAATAATGTGATGGTGGCTGCTGATCATGAAACCATCGTTAGTTAAGCTTCATTAGAAAGTTTCCATGGTTAAAGAATTGTTTTTCCTTATCTTGTTGTCACAATATTATGTGCAATATTCTCCC CTGCCAGTAATAAGATATATAC ] [-] EMBL CB620993 [ CATTCCAAAAACAATAGAGGAACACCTGGAACTTTCCAGAACGACTGTTGGTGCCTTTCAACTAGCATGTGCTTCTTTAGTTGGGATGGGTGATTTTATAACAGAGGATACTCTCGATTATCTTTTGACTTATCCAAAACTTCTTAAGTCTTACACAACATGTGTACGGCTCTCAAATGATATTGCTTCAACAAAGCGTGAACAAGCAGGGGACCACTATGCTTCCACAATTCAGTGTTACATGCTGCAGCATGGTACAACAATACATGAAGCATGCATTGGGATAAAGGAGTTGATAGAAGATTCGTGGAAGGATATGATGAAAGAATACCTTACACCAACAGACCTGCAACCAAAAATCGTGGCAAGAACGGTTATTGATTTTGCGCGAACGGGTGATTATATGTACAAGCAAGCAGATTCATTCACCTTTTCACATACAATCAAGGATATGATAGCATCACTTTACGTTGAGCCATATAGCATTTAAATCACCACACGCATTTACATTATAAATATTATATTATCAAGTAAGGAGTTTCACAATTGTAACAAATATTAATTAGTTTTCAATAATGTGATGGTGGCTGCTGATCATGAAACCATCGTTAGTTAAGCTTCATTAGAAAGTTTCCATGGTTAAAGAATTGTTTTTCCTTATCTTGTTGTCACAATATTATGTGCAATATTCTCCC C GCCAGTAATAAGATATATACTAATTGC] [-] EMBL CB620825 [ ATAGAGGAACACCTGGAACTTTCCAGAACGACTGTTGGTGCCTTTCAACTAGCATGTGCTTCTTTAGTTGGGATGGGTGATTTTATAACAGAGGATACTCTCGATTATCTTTTGACTTATCCAAAACTTCTTAAGTCTTACACAACATGTGTACGGCTCTCAAATGATATTGCTTCAACAAAGCGTGAACAAGCAGGGGACCACTATGCTTCCACAATTCAGTGTTACATGCTGCAGCATGGTACAACAATACATGAAGCATGCATTGGGATAAAGGAGTTGATAGAAGATTCGTGGAAGGATATGATGAAAGAATACCTTACACCAACAGACCTGCAACCAAAAATCGTGGCAAGAACGGTTATTGATTTTGCGCGAACGGGTGATTATATGTACAAGCAAGCAGATTCATTCACCTTTTCACATACAATCAAGGATATGATAGCATCACTTTACGTTGAGCCATATAGCATTTAAATCACCACACGCATTTACATTATAAATATTATATTATCAAGTAAGGAGTTTCACAATTGTAACAAATATTAATTAGTTTTCAATAATGTGATGGTGGCTGCTGATCATGAAACCATCGTTAGTTAAGCTTCATTAGAAAGTTTCCATGGTTAAAGAATTGTTTTTCCTTATCTTGTTGTCACAATATTATGTGCAATATTCTCCCAG GCCAGTAATAAGATATA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13837#1 ------------------------------------------------------------ consensus_13837#3 ------------------------------------------------------------ consensus_13837#0 AATCCTGTTGGCAACAATTAATAGGAAAGAGCTTTTTGTTAAGAGATCAGAAGATGTCAT 60 consensus_13837#2 ------------------------------------------------------------ consensus_13837#1 ------------------------------------------------------------ consensus_13837#3 ------------------------------------------------------------ consensus_13837#0 CGACACCTGCAGCTAATTTCTCCAATGAAGACGATGAGCGAAAGGCTCCTACCGGCTTCC 120 consensus_13837#2 ------------------------------------------------------------ consensus_13837#1 ------------------------------------------------------------ consensus_13837#3 ------------------------------------------------------------ consensus_13837#0 ACCCCAGCCTCTGGGGCGATTTCTTCATCAGTTACCAGCCACCTACTGCACCTAAGCATG 180 consensus_13837#2 ------------------------------------------------------------ consensus_13837#1 ------------------------------------------------------------ consensus_13837#3 ------------------------------------------------------------ consensus_13837#0 CTTACATGAAAGAAAGGGCTGAAGTGCTAAAAGAAGAAGTTAGAAAGGTAGTAAAGGGCT 240 consensus_13837#2 ------------------------------------------------------------ consensus_13837#1 ------------------------------------------------------------ consensus_13837#3 ------------------------------------------------------------ consensus_13837#0 CAAATGAAGTACCAGAGATATTGGATCTTGTGATCACGCTGCAACGACTTGGATTGGATA 300 consensus_13837#2 ------------------------------------------------------------ consensus_13837#1 ------------------------------------------------------------ consensus_13837#3 ------------------------------------------------------------ consensus_13837#0 GTTACTACAAGGCCGAGATAGATGAGCTTCTCTGCACTGTTTACAGCACCGACTACAACG 360 consensus_13837#2 ------------------------------------------------------------ consensus_13837#1 ------------------------------------------------------------ consensus_13837#3 ------------------------------------------------------------ consensus_13837#0 ATAAAGATTTACACCTAGTTTCTCTTCGATTTTATCTTCTACGGAAGAACGGCTATGATG 420 consensus_13837#2 ------------------------------------------------------------ consensus_13837#1 ------------------------------------------------------------ consensus_13837#3 ------------------------------------------------------------ consensus_13837#0 TGTCATCTGACATATTTCAACATTTTAAAGACAAAGAGGGGAGTTTTGTTGTTGATGACA 480 consensus_13837#2 ------------------------------------------------------------ consensus_13837#1 ------------------------------------------------------------ consensus_13837#3 ------------------------------------------------------------ consensus_13837#0 CAAGAAGTCTTTTAAGCTTATATAATGCGGCATATATGAGGACTCATGGTGAAACAGTAC 540 consensus_13837#2 ------------------------------------------------------------ consensus_13837#1 ------------------------------------------------------------ consensus_13837#3 ------------------------------------------------------------ consensus_13837#0 TTGATGAAGCAGTTGTTTTCACTAGTAACCGCCTAAGATCCGAATTGAAACATTTGAAAT 600 consensus_13837#2 ------------------------------------------------------------ consensus_13837#1 ------------------------------------------------------------ consensus_13837#3 ------------------------------------------------------------ consensus_13837#0 CTCCAGTAGCCGATGAAGTGTCTCTCGCTCTTGATACACCACTATTCCGGAGGGTTAGAA 660 consensus_13837#2 ------------------------------------------------------------ consensus_13837#1 ------------------------------------------------------------ consensus_13837#3 ------------------------------------------------------------ consensus_13837#0 TAATAGAAACACGAAACTATATTCCTATTTATGAAAGCGCGACTACACGAAATGAAGCCA 720 consensus_13837#2 ------------------------------------------------------------ consensus_13837#1 ------------------------------------------------------------ consensus_13837#3 ------------------------------------------------------------ consensus_13837#0 TATTAGAATTTGCAAAGTTGAATTTCAATCTCCTTCAACTTATTTATTGTGAGGAGTTAA 780 consensus_13837#2 ------------------------------------------------------------ consensus_13837#1 ----------------------------------TCATTGGAAGAAGCACTATGTCCAAA 26 consensus_13837#3 ------------------------------------------------------------ consensus_13837#0 AAACTATCACACGATGGTGGAAAGAGCTTAACGTTGAATCCAACTTAAGATTCATTCGGG 840 consensus_13837#2 ------------------------------------------------------------ consensus_13837#1 CAAAAGTTATCGAGTGTGTTATCTCAAAGAGTTGTTCAAGAGGTTAGTTCAAGAATTCTC 86 consensus_13837#3 ------------------------------------------------------------ consensus_13837#0 ATAGAATAGTGGAAATGCATTTTTGGATGACAGGAGCATGCTCGGAGCCCCATTATTCTC 900 consensus_13837#2 ------------------------------GCAACCATAGAAGAGAGAATTTTAATTTGC 30 consensus_13837#1 TC--AAGAGATAAAATGGCGT-GATGA------TCATTAC-ATTCCAAA-AACAATAGAG 135 consensus_13837#3 ---------------TGGCGT-GATGA------TCATTAC-ATTCCAAA-AACAATAGAG 36 consensus_13837#0 TTTTACGAATTATACTTACAAAGATGACAGCATTTATCACCATTCTAGA-TGATATATTT 959 consensus_13837#2 TAAGAGATGTCGTCGCCACCT-GCAGCTTTCTCCAATGAAGGCGATGAGCAGCCACAGCG 89 * * * ** * * * consensus_13837#1 GA--ACACCTGGAACATTCAAGAAAGACTGTTGGTGCCTTTGAACTAGCATGTGCT--TC 191 consensus_13837#3 GA--ACACCTGGAACTTTCCAGAACGACTGTTGGTGCCTTTCAACTAGCATGTGCT--TC 92 consensus_13837#0 GAT-ACATATGCTACAACCGAGGAGAGCA--TGATGCTTGCCAAAGCG-ATATATA--TG 1013 consensus_13837#2 AAGGGCTCCTACAAGCTTCCACCCTAGCCTCTGGGGCAATTTCTTCCTCAGTTACCAGCC 149 * * * * * * * ** ** * * consensus_13837#1 TTTTGTTGGGATG-GGCGACCTTG-TAGCAAAGGAAACTCTTGATTGCCTTTTGACTTAT 249 consensus_13837#3 TTTAGTTGGGATG-GGTGATTTTA-TAACAGAGGATACTCTCGATTATCTTTTGACTTAT 150 consensus_13837#0 TGCAATGAATCTGCAACAGTTCTACTTCCAAAATACATGAAGGATTTCTACTTATATTAT 1073 consensus_13837#2 ACCTACTGCGCTTAAGCATGCTTA-CATGAAAGAACGGGTTCAAGTTGTGAAAGAAGAAG 208 * * * * * * * * consensus_13837#1 CCAG--AACTTCTTAAGTCTTT--------CACAACATGTGTACG---GCTCTCAAATGA 296 consensus_13837#3 CCAA--AACTTCTTAAGTCTTA--------CACAACATGTGTACG---GCTCTCAAATGA 197 consensus_13837#0 TTAA--AGACATTTGATTCATTTGAAGAGGCACTAGGTCCAAACAAAAGTTATCGAGTGC 1131 consensus_13837#2 TTAGGAAGGTAGTAAAGGGCTCGAGTGAAGTACCAGAGATATTGG---ATCTTGTGATCA 265 * * * * * ** * * * consensus_13837#1 TATTGCTTCAACAAA--GCGTGAACAAGCAGGGGACCACCACCATGCTTCTACAATTCAG 354 consensus_13837#3 TATTGCTTCAACAAA--GCGTGAACAAGCAGGGGACCACTA---TGCTTCCACAATTCAG 252 consensus_13837#0 T-TTATTTCAAAGAGCTGCGTGAACAAGCAGGGGACCACTA---TGCTTCCACAATTCAG 1187 consensus_13837#2 CGCTGCAACGGCTTG--GATTGGATAGTTACTACGAGACTGAGATAAACGACCTTCTCTG 323 * * * ** * * * ** * * ** * consensus_13837#1 AGTTATATGCTCCAACATGGTGCAACAGCGCATGAAGCATGCGTTGGGA-TAAAGGAGTT 413 consensus_13837#3 TGTTACATGCTGCAGCATGGTACAACAATACATGAAGCATGCATTGGGA-TAAAGGAGTT 311 consensus_13837#0 TGTTACATGCTGCAGCATGGTACAACAATACATGAAGCATGCATTGGGA-TAAAGGAGTT 1246 consensus_13837#2 CATTGTTTACAACACCG-ACTACAACGATA-AAGATTTACACCTAGTTTCTCTTCGATTT 381 ** * * ** * * **** * ** * * * * * ** ** consensus_13837#1 GATAGAAGACTCATGGAAGGATATGATGAAAGAA-TACCTTACACCAACAGACCTGCAAC 472 consensus_13837#3 GATAGAAGATTCGTGGAAGGATATGATGAAAGAA-TACCTTACACCAACAGACCTGCAAC 370 consensus_13837#0 GATAGAAGATTCGTGGAAGGATATGATGAAAGAA-TACCTTGCACCAACAAACCTTCAGC 1305 consensus_13837#2 TATCTTCTACGAAAGAACGGCTATGATGTGTCATCTGATATGTTTCAACAT-TTTAAAGA 440 ** * * * ** ******* * * * ***** * * consensus_13837#1 CAAAAATCGTGGCAAGAACGGTTATTGATTTTGCGCGAACGGGTGATTATATGTACAAGC 532 consensus_13837#3 CAAAAATCGTGGCAAGAACGGTTATTGATTTTGCGCGAACGGGTGATTATATGTACAAGC 430 consensus_13837#0 CAAAAATCGTGGCAAGAACAGTTATTGATTTTGCACGAACTGGGGATTATATATACAAGC 1365 consensus_13837#2 CAAAGA----GGGGAGTTTTGTTGCTGATGACGTAAGAAGTCTTTTGAGCTTATATAATG 496 **** * ** ** *** **** * *** * ** ** consensus_13837#1 AAGTTGATTCATTCACTATTTCACATACAATCAAGGATATGATAGCATCGCTCTATATGG 592 consensus_13837#3 AAGCAGATTCATTCACCTTTTCACATACAATCAAGGATATGATAGCATCACTTTACGTTG 490 consensus_13837#0 AAGCAGATTCATTCACCTTTTCACATACAATCAAGGATATGATAGCATCACTTTACGTTG 1425 consensus_13837#2 CGGCATTTCTGAGGACTCATGGTGAAAAAGTACTTGATGAAGCAAT-TGTTTTTACAACT 555 * * ** * * * * * *** * * * ** consensus_13837#1 AGCCGTATAACATTTAAATCAAAACATGT-ATTTACATTATAAATATTATATTATCCAAT 651 consensus_13837#3 AGCCATATAGCATTTAAATCACCACACGC-ATTTACATTATAAATATTATATTATCAAGT 549 consensus_13837#0 AGCCATATAGCATTTAAATCACCACACGC-ATTTACATTATAAATATTATATTATCAAGT 1484 consensus_13837#2 AACCGCCTTAGATCCGAATTGGAACATTTGAAATCTCTGGCAGCTGATGAAGTGTCTCTT 615 * ** * ** *** *** * * * * * * * * ** * consensus_13837#1 A-TAGAGTTTCA-AATTGTAATATATATTCACTAGCTTTCAATAATGTGTTGGTGGCTGT 709 consensus_13837#3 A-AGGAGTTTCACAATTGTAACAAATATTAATTAGTTTTCAATAATGTGATGGTGGCTGC 608 consensus_13837#0 A-AGGAGTTTCACAATTGTAACAAATATTAATTAGTTTTCAATAATGTGATGGTGGCTGC 1543 consensus_13837#2 GCTCTTAATACACCCCTGTTCCGGAGGGTTAGAATATTAGAAATACGAAACTATA-TTCC 674 * ** *** * * * * ** ** * * * * consensus_13837#1 TGATCACCAAATAATCATTACTTTCAGC---CTCATTAGAAAGTTTCCATGGTTAAGGTA 766 consensus_13837#3 TGATCATGAAACCATCGTTAGTTA-AGC---TTCATTAGAAAGTTTCCATGGTTAA---- 660 consensus_13837#0 TGATCATGAAACCATCGTTAGTTA-AGC---TTCATTAGAAAGTTTCCATGGTTAA---- 1595 consensus_13837#2 TATTTATGAAAGTGCTACTACACGAAACGAATCCATATTAGAATTTGCAAAGTTGAATTT 734 * * * *** ** * * *** * * *** ** *** * consensus_13837#1 AGAAATGTTTT-CCTTAGCTTGTTGTCACA--ATATTATGTGCAATATACTAA------- 816 consensus_13837#3 AGAATTGTTTTTCCTTATCTTGTTGTCACA--ATATTATGTGCAATATTCTCCCCGCCAG 718 consensus_13837#0 AGAATTGTTTTTCCTTATCTCGTTGTCACAG-ATATTATGTGCAATATTCTCCCCGCCAG 1654 consensus_13837#2 CAATCTCCCTTCACTTA-TTTATTGTGAGGAGCTANAATCTATCACAGGATGGTGGAA-- 791 * * ** **** * **** * ** ** * * * * consensus_13837#1 --------------------------- consensus_13837#3 TAATAAGATATATACTAATTGC----- 740 consensus_13837#0 TAATAAGATATATACTAATTGCTCAAA 1681 consensus_13837#2 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||