cluster # 13840

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13840 cluster # 13840 Sequences # 14 consensus # 6

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13840#0 length = 1338 sequences # 1
consensus_13840#1 length = 1124 sequences # 5
consensus_13840#2 length = 631 sequences # 4

consensus_13840#3 length = 553 sequences # 2
consensus_13840#4 length = 428 sequences # 1
consensus_13840#5 length = 289 sequences # 1

consensusID : consensus_13840#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1338
fasta sequence

                              [TTCCTCGAGCACTGTTGGCCTACTGGAACACCCGCACGCACCGCAGTTTAGCCATATCGCCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGTGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGAGATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGTGGGCGGACAAGCTGCGCGGCGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAGCTAGTTAGCAAATGGAAACCAACAACTATAGGCACGCTGAAGAGGACTTACCGAGTTCGTTCAGTAGAAGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGTTCTCTCCGAAGATGACCACTTTGTGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAGAGTGTGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGCTTCCTACCCCTCACCTAGTTCTGGAGATTACAGCTTTCCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGTCTTGCTAAGAAGTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGAAGGTCGCGGCCGCTAGAATAGTCTAGAGAAAAAACTTCCCAAACTCCCTGAACCTGAAAATTAAAGGACTGCAATGTTGTTGTCACCTGGTTATTGGGCTTATAGGGTTCAATAAGAAAGCGTCCCATTACAACTAGACTTTTCACGGCATTAAGGGGGTGGCCACACCCAGATAAGCGGACCGCGGCGGCGAAAATCATAGTACGGCAAAATATGATAAAAGAGGAAGAAA]

[+] EMBL AK109383             [TTCCTCGAGCACTGTTGGCCTACTGGAACACCCGCACGCACCGCAGTTTAGCCATATCGCCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGTGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGAGATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGTGGGCGGACAAGCTGCGCGGCGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAGCTAGTTAGCAAATGGAAACCAACAACTATAGGCACGCTGAAGAGGACTTACCGAGTTCGTTCAGTAGAAGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGTTCTCTCCGAAGATGACCACTTTGTGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAGAGTGTGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGCTTCCTACCCCTCACCTAGTTCTGGAGATTACAGCTTTCCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGTCTTGCTAAGAAGTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGAAGGTCGCGGCCGCTAGAATAGTCTAGAGAAAAAACTTCCCAAACTCCCTGAACCTGAAAATTAAAGGACTGCAATGTTGTTGTCACCTGGTTATTGGGCTTATAGGGTTCAATAAGAAAGCGTCCCATTACAACTAGACTTTTCACGGCATTAAGGGGGTGGCCACACCCAGATAAGCGGACCGCGGCGGCGAAAATCATAGTACGGCAAAATATGATAAAAGAGGAAGAAA]




>consensus_13840#0
TTCCTCGAGCACTGTTGGCCTACTGGAACACCCGCACGCACCGCAGTTTAGCCATATCGC
CGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCGT
GGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCC
CATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGT
GGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTG
CCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGC
CCACGAGATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGTGGGCGGA
CAAGCTGCGCGGCGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAGCTAGTTAG
CAAATGGAAACCAACAACTATAGGCACGCTGAAGAGGACTTACCGAGTTCGTTCAGTAGA
AGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGTTCTCTCCGAAGATGACCACTTTGT
GGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAGAGTGT
GTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGCTTCCTACCCCTCACCTAGTTCTGGA
GATTACAGCTTTCCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCT
CGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCA
GCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGGCTCGAAATGGTGCTGAGGAT
GAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGC
TGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGTCTTGCTAAGAAGTTAAGAACT
ACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATAAAAAAAAAAAAAAAA
AAAAAGGCCACATGTGCTCGAGCTGAAGGTCGCGGCCGCTAGAATAGTCTAGAGAAAAAA
CTTCCCAAACTCCCTGAACCTGAAAATTAAAGGACTGCAATGTTGTTGTCACCTGGTTAT
TGGGCTTATAGGGTTCAATAAGAAAGCGTCCCATTACAACTAGACTTTTCACGGCATTAA
GGGGGTGGCCACACCCAGATAAGCGGACCGCGGCGGCGAAAATCATAGTACGGCAAAATA
TGATAAAAGAGGAAGAAA

consensusID : consensus_13840#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1124
fasta sequence

                              [ATCGCCTCAAAACTAACTGAATCACTGAACACCCGCACGCACCGCAGTTTAGCCATATCGCCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGTGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGAGATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGTGGGCGGACAAGCTGCGCGGCGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAGCTAGTTAGCAAATGGAAACCAACAACTAAAGGCACGCTGAAGAGGACTTACCGAGTTCGTTCAGTAGAAGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGTTCTCTCCGAAGATGACCACTTTGTGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAGAGTGTGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGCTTCCTACCCCTCACCTAGTTCTGGAGATTACAGCTTTCCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGTCTTGCTAAGAAGTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATATTTGTGCTCAGTCTTTCTAGAACTCTAATATCAAGAAGTCTTTGTCATAAAAAAAAAA]

[+] EMBL AK068225             [ATCGCCTCAAAACTAACTGAATCACTGAACACCCGCACGCACCGCAGTTTAGCCATATCGCCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGTGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGAGATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGTGGGCGGACAAGCTGCGCGGCGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAGCTAGTTAGCAAATGGAAACCAACAACTAAAGGCACGCTGAAGAGGACTTACCGAGTTCGTTCAGTAGAAGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGTTCTCTCCGAAGATGACCACTTTGTGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAGAGTGTGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGCTTCCTACCCCTCACCTAGTTCTGGAGATTACAGCTTTCCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGTCTTGCTAAGAAGTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATATTTGTGCTCAGTCTTTCTAGAACTCTAATATCAAGAAGTCTTTGT             ]
[+] EMBL AK102811             [                                  GCACGCACCGCAGTTTAGCCATATCGCCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGTGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGAGATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGTGGGCGGACAAGCTGCGCGGCGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAGCTAGTTAGCAAATGGAAACCAACAACTAAAGGCACGCTGAAGAGGACTTACCGAGTTCGTTCAGTAGAAGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGTTCTCTCCGAAGATGACCACTTTGTGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAGAGTGTGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGCTTCCTACCCCTCACCTAGTTCTGGAGATTACAGCTTTCCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGTCTTGCTAAGAAGTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATATTTGTGCTCAGTCTTTCTAGAACTCTAATATCAAGAAGTCTTTGT             ]
[+] EMBL CA754545             [                                              GTTTAGCCATATCGCCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGTGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAA CCCTTCCTCGCCCACGAGATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGTGGGCGGACAAGCTGCGCGGCGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAGCTAGTTAGCANATGGAAACCAACAACTAAAGGCACGCTGAAGAGGACTTACCGAGTTCGTTCAGTAGAAGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGNTCTCTCCGAAGATGACCACTTTGTGGACGCCTCCCGTCACNAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAGAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CB636292             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GAAATTGCTTTGGTTCTTTCCGAAGATGACCACTTTGTGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAAAGTGTGTGCTGCTATAATGTGAGAGCTTTGTTCGATGAGCTTCCTACCCCTCACCTAGTTTTGGAGATTACAGCTTTCCCTGCTGGACCTTTCACTGATAATGACTACCGCAAGGCCGAAAGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGGTTACTTTTGCCCAAGCTGTAAATTTTTTACCGATGGGGCTTGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGGTTACTTTTGCCCAAGCTGTAAATTTTTTACCGATGGGCCTGTAAATTGATTCAGTCTTGGTAAGAAGTTAAGAACTACTTGTAAAACCTGAGTTTTGGTCAATTTTTTTAGAATTTTAATATTTGTGGTCAG                                               ]
[+] EMBL AU166729             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ATGAGCTTCCTACCCCTCACCTAGTTCTGGAGATTACAGCTTTCCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGTCTTGCTAAGAAGTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATATTTGTGCTCAGTCTTTCTAGAACTCTAATATCAAGAAGTCTTTGTCATAAAAAAAAAA]




>consensus_13840#1
ATCGCCTCAAAACTAACTGAATCACTGAACACCCGCACGCACCGCAGTTTAGCCATATCG
CCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCG
TGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCC
CCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGG
TGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCT
GCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCG
CCCACGAGATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGTGGGCGG
ACAAGCTGCGCGGCGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAGCTAGTTA
GCAAATGGAAACCAACAACTAAAGGCACGCTGAAGAGGACTTACCGAGTTCGTTCAGTAG
AAGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGTTCTCTCCGAAGATGACCACTTTG
TGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAGAGTG
TGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGCTTCCTACCCCTCACCTAGTTCTGG
AGATTACAGCTTTCCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGC
TCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTC
AGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGGCTCGAAATGGTGCTGAGGA
TGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAG
CTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGTCTTGCTAAGAAGTTAAGAAC
TACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATATTTGTGCTCAGTCT
TTCTAGAACTCTAATATCAAGAAGTCTTTGTCATAAAAAAAAAA

consensusID : consensus_13840#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 631
fasta sequence

                              [AAGCTGCGCGCGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAGCTAGTTAGCAAATGGAAACCACAACTAAAGGCACGCTGAAGAGGACTTACCGAGTTCGTTCAGTAGAAGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGTTCTCTCTGAAGATGACCACTTTGTGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAGAGTGTGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGC-TTCCTACCCCTCACCTAGTTCTGGAGATTAC-AGCTTT-CCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGAAATGGTGCTGAGGAT--GAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGT-CTTGCTAAGAAGTTAA-GAA-CTA----CTT---GT----AAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAAAAAAAGTGCTCAGTCTTTCTAGAACTCTAATATCCAAGAAGTCTTTGTCATAGCCCTACATTTTTAGGCCCCCCACTTATTTTTAAAAAAAAA]

[+] EMBL BM419515             [AAGCTGCGCGCGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAGCTAGTTAGCAAATGGAAACCACAACTAAAGGCACGCTGAAGAGGACTTACCGAGTTCGTTCAGTAGAAGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGTTCTCTCTGAAGATGACCACTTTGTGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAGAGTGTGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGC TTCCTACCCCTCACCTAGTTCTGGAGATTAC AGCTTT CCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGAAATGGTGCTGAGGAT  GAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGT CTTGCTAAGAAGTTAA GAA CTA    CTT   GT    AAAACCTGAGTTCTGCTCAAaaaaaaaa                                                                                                      ]
[+] EMBL BI813231             [                                                                                                                         aGTC GCGGATTCTTAAAGAAATT CTTTGGTTCTCTCTGAAGATGACCACTTTGTGGACGCCTCCA TCACAA GGTT TCAAATAAGGAGGGAAAGTGC CACGGCGAGAGTGTGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGCTTTCCTACCCCTCACCTAGTTCTGGAGATTACAAGCTTTCCCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGAAATGGT CTGAGGATTGGAGTGCTTCCA TTAATTTCAG ACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGT CTTGCTAAGAAGTTAA GAA CTA    CTT   GT    AAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAAAAAAA                                                                                        ]
[-] EMBL BM422276             [                                                                                                                                                                                                                                       GAGTGTGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGC TTCCTACCCCTCACCTAGTTCTGGAGATTAC AGCTTT CCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGAAATGGTGCTGAGGAT  GAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGTCCTTGCTAAGAAGTTAAGGAACCTAAACCCTTTTNGTTAAAAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTA                                                                                              ]
[+] EMBL BQ908188             [                                                                                                                                                                                                                                                                 ccgTGTTCGATGAGC TTCCTACCCCTCACCTAGTTCTGGAGATTAC AGCTTT CCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGAAATGGTGCTGAGGAT  GAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGT CTTGCTAAGAAGTTAA GAA CTA    CTT   GT    AAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATATTTGTGCTCAGTCTTTCTAGAACTCTAATATCCAAGAAGTCTTTGTCATAGCCCTACATTTTTAGGCCCCCCACTTATTTTTAAAAAAAAA]




>consensus_13840#2
AAGCTGCGCGCGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAGCTAGTTAGCA
AATGGAAACCACAACTAAAGGCACGCTGAAGAGGACTTACCGAGTTCGTTCAGTAGAAGA
AGGTCGGCGGATTCTTAAAGAAATTGCTTTGGTTCTCTCTGAAGATGACCACTTTGTGGA
CGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAGAGTGTGTG
CTGCTATAATGTGAGAGCTCTGTTCGATGAGCTTCCTACCCCTCACCTAGTTCTGGAGAT
TACAGCTTTCCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAGAGGCTCGA
AATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCT
TACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGTCTTGCT
AAGAAGTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAAAA
AAAGTGCTCAGTCTTTCTAGAACTCTAATATCCAAGAAGTCTTTGTCATAGCCCTACATT
TTTAGGCCCCCCACTTATTTTTAAAAAAAAA

consensusID : consensus_13840#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 553
fasta sequence

                              [GCCATATCGCCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGTGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGAGATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGTGGGCGGACAAGCTGCGCGGCGGCGCGCCAGGTTTCGTGCAGTTTCAATTCAAAAATCGATTTATCTCTCCTTCTCAGTTAATTTTATCCATGATTTATTAGAACGCGAAAGGTGTGTGGGATTCTGTAATCGTTAGGAGAATGTGGATCTTGGATAAGATATTCCTCTNTGGGCATCTGGATAGCGAGCT]

[+] EMBL CB639790             [GCCATATCGCCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGTGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGAGATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGTGGGCGGACAAGCTGCGCGGCGGCGCGCCAGGTTTCGTGCAGTTTCAATTCAAAAATCGATTTATCTCTCCTTCTCAGTTAATTTTATCCATGATTTATTAGAACGCGAAAGGTGTGTGGGATTCTGTAATCGTTAGGAGAATGTGGATCTTGGATAAGATATTCCTCTNTGGGCATCTGGATAGCGAGCT]
[+] EMBL CB636291             [                                                                                 CGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGTGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGAGATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGTGGGCGGACAAGCTGCGCGGCGGCGCGCCAGGTTTCGTGCAGTTTCAATTCAAAAATCGATTTATCTCTCCTTCTCAGTTAATTTTATCCATGATTTATTAGAACGCGAAAGGTGTGTGGGATTCTGTAATCGTTAAGAGAA                                                 ]




>consensus_13840#3
GCCATATCGCCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCG
CCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCC
CGACGTCCCCCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCG
CCGCCGCGGTGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCG
GGAGGCTCTGCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACC
CCTTCCTCGCCCACGAGATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGA
AGTGGGCGGACAAGCTGCGCGGCGGCGCGCCAGGTTTCGTGCAGTTTCAATTCAAAAATC
GATTTATCTCTCCTTCTCAGTTAATTTTATCCATGATTTATTAGAACGCGAAAGGTGTGT
GGGATTCTGTAATCGTTAGGAGAATGTGGATCTTGGATAAGATATTCCTCTNTGGGCATC
TGGATAGCGAGCT

consensusID : consensus_13840#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence

                              [CTGAATCACTGAACACCCGCACGCACCGCAGTTTAGCCATATCGCCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGTGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGGTAATCTGCATTAGCCGCGGCTGGTTTCGATTCGGGGGAAAAAAGGCTGGGGGTTCTTGATGCGCCTCGTGTCGTGTT]

[+] EMBL AU166728             [CTGAATCACTGAACACCCGCACGCACCGCAGTTTAGCCATATCGCCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGTGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGGTAATCTGCATTAGCCGCGGCTGGTTTCGATTCGGGGGAAAAAAGGCTGGGGGTTCTTGATGCGCCTCGTGTCGTGTT]




>consensus_13840#4
CTGAATCACTGAACACCCGCACGCACCGCAGTTTAGCCATATCGCCGCCGCCGCCGCCGC
CATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCT
CTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCAC
GCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGGTGGTGCCCATCGCGGC
GTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGCT
CCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGGTAATCTGCA
TTAGCCGCGGCTGGTTTCGATTCGGGGGAAAAAAGGCTGGGGGTTCTTGATGCGCCTCGT
GTCGTGTT

consensusID : consensus_13840#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 289
fasta sequence

                              [NTGNNTTTTNTNNGNTNGGCCTTTNNNAANNATGCTTTCCCNGCNGGACCTCNCACTGATNATGACTACCGCAAGGNCGANAGGCTCGAAATGGTGCTGAGGATGANTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCCCTCTTGCTAAGAAGTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATATTTGTGCTCAAAAAAAAAAA]

[+] EMBL AA751578             [NTGNNTTTTNTNNGNTNGGCCTTTNNNAANNATGCTTTCCCNGCNGGACCTCNCACTGATNATGACTACCGCAAGGNCGANAGGCTCGAAATGGTGCTGAGGATGANTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCCCTCTTGCTAAGAAGTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATATTTGTGCTCAAAAAAAAAAA]




>consensus_13840#5
NTGNNTTTTNTNNGNTNGGCCTTTNNNAANNATGCTTTCCCNGCNGGACCTCNCACTGAT
NATGACTACCGCAAGGNCGANAGGCTCGAAATGGTGCTGAGGATGANTGCTTCCATTTAA
TTTCAGAACACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCG
ATGGGCCTGTAAATTGATTCCCTCTTGCTAAGAAGTTAAGAACTACTTGTAAAACCTGAG
TTCTGCTCAATCTTTCTAGAATTCTAATATTTGTGCTCAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13840#3      ------------------------------------------------------------
consensus_13840#4      ------------------------------------------------------------
consensus_13840#0      ------------------------------------------------------------
consensus_13840#2      ------------------------------------------------------------
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      ATCGCCTCAAAACTAACTGAATCACTGAACACCCGCACGCACCGCAGTTTAGCCATATCG 60
                                                                                   

consensus_13840#3      ------------------------------------------------------------
consensus_13840#4      ------------------------------------------------------------
consensus_13840#0      ------------------------------------------------------------
consensus_13840#2      ------------------------------------------------------------
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      CCGCCGCCGCCGCCGCCATGCTCGCCTACCTCCTCCACGCCCCCGCCGCCGCCGCCGCCG 120
                                                                                   

consensus_13840#3      ------------------------------------------------------------
consensus_13840#4      ------------------------------------------------------------
consensus_13840#0      ------------------------------------------------------------
consensus_13840#2      ------------------------------------------------------------
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      TGGTGCCCAGCCCGCTCTCCCTCCGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCC 180
                                                                                   

consensus_13840#3      ------------------------------------------------------------
consensus_13840#4      ------------------------------------------------------------
consensus_13840#0      ------------------------------------------------------------
consensus_13840#2      ------------------------------------------------------------
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      CCATCCGCGTGCCCACGCCGAGGCGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGCGG 240
                                                                                   

consensus_13840#3      ------------------------------------------------------------
consensus_13840#4      ------------------------------------------------------------
consensus_13840#0      ------------------------------------------------------------
consensus_13840#2      ------------------------------------------------------------
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      TGGTGCCCATCGCGGCGTCGCTGCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCT 300
                                                                                   

consensus_13840#3      ------------------------------------------------------------
consensus_13840#4      ------------------------------------------------------------
consensus_13840#0      ------------------------------------------------------------
consensus_13840#2      ------------------------------------------------------------
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      GCCTCTACTACGCGCTCCTCCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCG 360
                                                                                   

consensus_13840#3      ------------------------------------------------------------
consensus_13840#4      ------------------------------------------------------------
consensus_13840#0      ------------------------------------------------------------
consensus_13840#2      ------------------------------------------------------------
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      CCCACGAGATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGTGGGCGG 420
                                                                                   

consensus_13840#3      ------------------------------------------------------------
consensus_13840#4      ------------------------------------------------------------
consensus_13840#0      ------------------------------------------------------------
consensus_13840#2      --AAGCTGCGCG-CGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAGCTAGTTA 57
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      ACAAGCTGCGCGGCGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAGCTAGTTA 480
                                                                                   

consensus_13840#3      ------------------------------------------------------------
consensus_13840#4      ----------------------------------------------------CTGAATCA 8
consensus_13840#0      -------------------------------------TTCCTCGAGCACTGTTGGCCTAC 23
consensus_13840#2      GCAAATGGAAACCA-CAACTAAAGGCACGCTGAAGAGGACTTACCGAGTTCGTTCAGTAG 116
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      GCAAATGGAAACCAACAACTAAAGGCACGCTGAAGAGGACTTACCGAGTTCGTTCAGTAG 540
                                                                                   

consensus_13840#3      ---------------------------GCCATATCGCCGCCGCCGCCGCCGCCATGCTCG 33
consensus_13840#4      CTGAACACCCGCACGCACCGCAGTTTAGCCATATCGCCGCCGCCGCCGCCGCCATGCTCG 68
consensus_13840#0      TGGAACACCCGCACGCACCGCAGTTTAGCCATATCGCCGCCGCCGCCGCCGCCATGCTCG 83
consensus_13840#2      AAGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGTTCTCTCTGAAGATGACCACTTTG 176
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      AAGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGTTCTCTCCGAAGATGACCACTTTG 600
                                                                                   

consensus_13840#3      CCTACCTCCTCCA-CGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTC 92
consensus_13840#4      CCTACCTCCTCCA-CGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTC 127
consensus_13840#0      CCTACCTCCTCCA-CGCCCCCGCCGCCGCCGCCGCCGTGGTGCCCAGCCCGCTCTCCCTC 142
consensus_13840#2      TGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAGAGTG 236
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      TGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGTGCGCACGGCGAGAGTG 660
                                                                                   

consensus_13840#3      CGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGG 152
consensus_13840#4      CGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGG 187
consensus_13840#0      CGCTCGCCGCCGAAGACGCCCTTCCTCCCGACGTCCCCCATCCGCGTGCCCACGCCGAGG 202
consensus_13840#2      TGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGCTTCCTACCCCTCACCTAGTTCTGG 296
consensus_13840#5      ------------------------------NTGNNTTTTNTNNGNTNGGCCT----TTNN 26
consensus_13840#1      TGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGCTTCCTACCCCTCACCTAGTTCTGG 720
                                                       *       *        **         

consensus_13840#3      CGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGC-GGTGGTGCCCATCGCGGCGTCGCT 211
consensus_13840#4      CGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGC-GGTGGTGCCCATCGCGGCGTCGCT 246
consensus_13840#0      CGGCGCCCCGCCGCGTTCTCCTCCGCCGCCGCCGC-GGTGGTGCCCATCGCGGCGTCGCT 261
consensus_13840#2      AGAT----TACAGCTTTCCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAG 352
consensus_13840#5      NAAN----NAT-GCTTTCCCNGCNGGACCTCNCACTGATNATGACTACCGCAAGGNCGAN 81
consensus_13840#1      AGAT----TACAGCTTTCCCTGCTGGACCTCTCACTGATAATGACTACCGCAAGGCCGAG 776
                                   ** *** *  * *   *   * * * *  ** * * ***   * **  

consensus_13840#3      --GCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGC-TCCT 268
consensus_13840#4      --GCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGC-TCCT 303
consensus_13840#0      --GCTCGAGGGCCCCGTGCTGGTCTGGGCCGGGAGGCTCTGCCTCTACTACGCGC-TCCT 318
consensus_13840#2      AGGCTCGAAA---TGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTT 409
consensus_13840#5      AGGCTCGAAA---TGGTGCTGAGGATGANTGCTTCCATTTAATTTCAGAACACCCATTTT 138
consensus_13840#1      AGGCTCGAAA---TGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTT 833
                         ******       ******     *   *      * *   *  *  ** * * *  *

consensus_13840#3      CCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGA------------ 316
consensus_13840#4      CCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGGT----------- 352
consensus_13840#0      CCACATCGGCCTCGCCGGCTCCCCGCGCAACCCCTTCCTCGCCCACGA------------ 366
consensus_13840#2      CCATTTCAGCTTACTT--TTGCCCAAGCTGTAAATTTTCTACCGATGGG----------- 456
consensus_13840#5      CCATTTCAGCTTACTT--TTGCCCAAGCTGTAAATTTTCTACCGATGGG----------- 185
consensus_13840#1      CCATTTCAGCTTACTT--TTGCCCAAGCTGTAAATTTTCTACCGATGGGGCTCGAAATGG 891
                       ***  ** ** *       * ***  **      **     ** * *             

consensus_13840#3      ------------------------------------------------------------
consensus_13840#4      ------------------------------------------------------------
consensus_13840#0      ------------------------------------------------------------
consensus_13840#2      ------------------------------------------------------------
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      TGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAGCTTACTT 951
                                                                                   

consensus_13840#3      -------------GATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGT 363
consensus_13840#4      -------------AATCTGCATTAGCCGCGGCTGG--TTTCGATTCGGGGG---AAAAAA 394
consensus_13840#0      -------------GATTGGCGATGATGGCGCCGGGGACAGCGACCTAGGGTTCTCGAAGT 413
consensus_13840#2      -------------------------------CCTGTAAATTGATTCAGTCTTGCTAAGAA 485
consensus_13840#5      -------------------------------CCTGTAAATTGATTCCCTCTTGCTAAGAA 214
consensus_13840#1      TTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGTCTTGCTAAGAA 1011
                                                      *  *      **             *   

consensus_13840#3      GGGCGGACAAGCTGCGCGGCGGCGCGCCAGGTTTCGTGCAGTTTCAATTCAAAAATCGAT 423
consensus_13840#4      GGCTGGGGGTTCT------TGATGCGCCTCGTGTCGTGTT-------------------- 428
consensus_13840#0      GGGCGGACAAGCTGCGCGGCGGCGCGCCAGGAGAAAACGAAGCCCAGGATAAGAGGAAG- 472
consensus_13840#2      GTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAAAAAAAGT 545
consensus_13840#5      GTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATATTTGT 274
consensus_13840#1      GTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAATATTTGT 1071
                       *    *     **          * *    *                             

consensus_13840#3      TTATCTCTCCTTCTCAGTTAATTTTATCCATGATTTATTAGAACGCGAAAGGTGTGTGGG 483
consensus_13840#4      ------------------------------------------------------------
consensus_13840#0      ---------CTAGTTAGCAAATGGAAACCAACAACTATAGGCACGCTGAAGAGGACTTAC 523
consensus_13840#2      GCTCAGTCTTTCTAGAACTCTAATATCCAAGAAGTCTTTGTCATAGCCCTACATTTTTAG 605
consensus_13840#5      GCTCAAAAAAAAAAA--------------------------------------------- 289
consensus_13840#1      GCTCAGTCTTTCTAGAACTCTAATATC-AAGAAGTCTTTGTCATAAAAAAAAAA------ 1124
                                                                                   

consensus_13840#3      ATTCTGTAATCGTTAGGAGAATGTGGATCTTGGATAAGATATTCCTCTNTGGGCATCTGG 543
consensus_13840#4      ------------------------------------------------------------
consensus_13840#0      CGAGTTCGTTCAGTAGAAGAAGGTCGGCGGATTCTTAAAGAAATTGCTTTGGTTCTCTCC 583
consensus_13840#2      GCCCCCCACTTATTTTTAAAAAAAAA---------------------------------- 631
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      ------------------------------------------------------------
                                                                                   

consensus_13840#3      ATAGCGAGCT-------------------------------------------------- 553
consensus_13840#4      ------------------------------------------------------------
consensus_13840#0      GAAGATGACCACTTTGTGGACGCCTCCAGTCACAAGGGTTGTCAAATAAGGAGGGAAAGT 643
consensus_13840#2      ------------------------------------------------------------
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      ------------------------------------------------------------
                                                                                   

consensus_13840#3      ------------------------------------------------------------
consensus_13840#4      ------------------------------------------------------------
consensus_13840#0      GCGCACGGCGAGAGTGTGTGCTGCTATAATGTGAGAGCTCTGTTCGATGAGCTTCCTACC 703
consensus_13840#2      ------------------------------------------------------------
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      ------------------------------------------------------------
                                                                                   

consensus_13840#3      ------------------------------------------------------------
consensus_13840#4      ------------------------------------------------------------
consensus_13840#0      CCTCACCTAGTTCTGGAGATTACAGCTTTCCCTGCTGGACCTCTCACTGATAATGACTAC 763
consensus_13840#2      ------------------------------------------------------------
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      ------------------------------------------------------------
                                                                                   

consensus_13840#3      ------------------------------------------------------------
consensus_13840#4      ------------------------------------------------------------
consensus_13840#0      CGCAAGGCCGAGAGGCTCGAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAAC 823
consensus_13840#2      ------------------------------------------------------------
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      ------------------------------------------------------------
                                                                                   

consensus_13840#3      ------------------------------------------------------------
consensus_13840#4      ------------------------------------------------------------
consensus_13840#0      ACCCATTTTCCATTTCAGCTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGGCTC 883
consensus_13840#2      ------------------------------------------------------------
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      ------------------------------------------------------------
                                                                                   

consensus_13840#3      ------------------------------------------------------------
consensus_13840#4      ------------------------------------------------------------
consensus_13840#0      GAAATGGTGCTGAGGATGAGTGCTTCCATTTAATTTCAGAACACCCATTTTCCATTTCAG 943
consensus_13840#2      ------------------------------------------------------------
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      ------------------------------------------------------------
                                                                                   

consensus_13840#3      ------------------------------------------------------------
consensus_13840#4      ------------------------------------------------------------
consensus_13840#0      CTTACTTTTGCCCAAGCTGTAAATTTTCTACCGATGGGCCTGTAAATTGATTCAGTCTTG 1003
consensus_13840#2      ------------------------------------------------------------
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      ------------------------------------------------------------
                                                                                   

consensus_13840#3      ------------------------------------------------------------
consensus_13840#4      ------------------------------------------------------------
consensus_13840#0      CTAAGAAGTTAAGAACTACTTGTAAAACCTGAGTTCTGCTCAATCTTTCTAGAATTCTAA 1063
consensus_13840#2      ------------------------------------------------------------
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      ------------------------------------------------------------
                                                                                   

consensus_13840#3      ------------------------------------------------------------
consensus_13840#4      ------------------------------------------------------------
consensus_13840#0      TAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGAAGGTCGCGGCCGCTAGA 1123
consensus_13840#2      ------------------------------------------------------------
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      ------------------------------------------------------------
                                                                                   

consensus_13840#3      ------------------------------------------------------------
consensus_13840#4      ------------------------------------------------------------
consensus_13840#0      ATAGTCTAGAGAAAAAACTTCCCAAACTCCCTGAACCTGAAAATTAAAGGACTGCAATGT 1183
consensus_13840#2      ------------------------------------------------------------
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      ------------------------------------------------------------
                                                                                   

consensus_13840#3      ------------------------------------------------------------
consensus_13840#4      ------------------------------------------------------------
consensus_13840#0      TGTTGTCACCTGGTTATTGGGCTTATAGGGTTCAATAAGAAAGCGTCCCATTACAACTAG 1243
consensus_13840#2      ------------------------------------------------------------
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      ------------------------------------------------------------
                                                                                   

consensus_13840#3      ------------------------------------------------------------
consensus_13840#4      ------------------------------------------------------------
consensus_13840#0      ACTTTTCACGGCATTAAGGGGGTGGCCACACCCAGATAAGCGGACCGCGGCGGCGAAAAT 1303
consensus_13840#2      ------------------------------------------------------------
consensus_13840#5      ------------------------------------------------------------
consensus_13840#1      ------------------------------------------------------------
                                                                                   

consensus_13840#3      -----------------------------------
consensus_13840#4      -----------------------------------
consensus_13840#0      CATAGTACGGCAAAATATGATAAAAGAGGAAGAAA 1338
consensus_13840#2      -----------------------------------
consensus_13840#5      -----------------------------------
consensus_13840#1      -----------------------------------