These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13842#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 2418 fasta sequence [AGAAAAAGTGGAGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTCGCTCGCCCTCAAGCCAAGAAAAGGTTCTCCTCTTCGCTCTTGCTGCTTGCGCTCCTCACCCGATCTCGCCATTCGCGTCGGCGGCCGGCCGGTTGCCCCTGCCGCCCCGGTTCTTGGATCCTAGATTTGGCTGTCCGGGGAGCGGAAAGGGTTGGATTTTTCTTTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGGGAGTGTGTTGGGGAGGGGCGATGGGGGCGTCGCCGCCGTCGCCTGATCCGATGAGGCCCCGGGCGGTGGAGTGAGCGGCTGTTCCTGGACCAGGTCTGATTCTCCGTGCTGTGGTTCAAATGATCTGGGCCTCGTGTTGATTGGGTTGGGGGAGGCTGGGTGGTGGATTCCTTCAGGTCTGGAGATCTTTGTGCTGTTGGGTGAGTTGGGAGGGAGCTGTGGGTTTGTAGATCCCTGCTGGTTGCTGCGGCTGATTTGGGTATTGCTAGGGTTTTTGGTTGGCTGTGGTGGGGGG-GGGGGGGGAAGAAGATGATCAAGCAGATCCTTGGCCGGCTGCCGAGGAAGCCAGGGAAGGCCGGCGATAGCCGGGACGCCGCTGGGCCGAACGGCAATGAGCCGTCTAACTCGTACAGCGTCGCCAGGAGCGTGGAGCAAGGGAACAAGAGGAGTGGAAATGGGGATTACGTGGTGCCGGCTGGGCTGACGCCCAATCCGATGATGAATGGGACTGTGGTGTATCACTCCAACGAGCCGCTGCCGGCGTTCAAGGACGTGCCGGCCTCGGAGAAGCAGAATTTGTTTGTCAAGAAGGTGAACCTGTGCTGCGCGGTGTACGATTTCGCGGATCCGACAAAGAATCTGAAGGAAAAGGAGACGAAGCGGCAGACGCTTATGGAACTTGTTGACTATGTCACTTCTGCAAATGGCAAGTTCTCTGAAGTCGTCATGTCGGAGATTACCAAGATGGTGTCGATTAACTTGTTCCGGAGCTCCAGCCCCACCCCTCGAGAGAACAAGGCCATCGAAGGAGTTGATCTGGAGGAGGAGGAGCCTCTCATGGACCCAGCATGGTCACATTTACAGATAGTTTATGAGGTTTTCTTGAGGTTTGTCGCATCACAGGAGACAGATGCAAAGCTGGCTAAGAGATACATAGATCATTCCTTCATCCTTAGGCTACTAGATCTTTTTGATTCGGAAGACCCCAGGGAAAGGGATTATTTGAAGACAATCCTCCATCGCATATATGGTAAATTCATGGTGCACCGCCCCTTCATCAGGAAAGC-AATCAACAATATTTTCTACAGGTTTATATTTGAAACAGAG-AAGCATAATGGTGTTGCAGAGCTGCTGGAGATCTTGGGCAGCATAATTAATGGTTTTGCTCTTCCACTTAAAGAAGAGCACAAATTGTTCCTTGTCCGGGCACTGATCCCACTTCACAAGCCAAAATGTGTATCTATGTACCATCAGCAATTATCATACTGCATCACACAGTTTGTTGAGAAGGACTGCAAACTTGCTGACACTGTTATTAGGGGCTTGCTAAAATATTGGCCTGTGACAAACAGTTCAAAGGAGGTGATGTTCTTGGGTGAACTAGAAGAGGTTCTGGAGGCAACACAGCCTGCAGAATTCCAAAGATGCATGGTTCCACTCTTCCG-TCAGATTG-CCTGTAG-CAT-GAA-TAGCT-CACATTT--CCAGGTGGCAG-AGCGGGCGCTGTTTCTTTGGAACAATGACCA-CATT-GA-GAACTTAATTAAGCAGAATTACAAGGTGATATTA-CCCATTATCTTTCCTG-CGCTTGAGAGGAATGCAAGGGGTCACTGGAA-CCAAGCAGTTCGAAGCCTGACACTGAACGTA-CGCAAGATCTTCTCAGATCATGATTCTGCATTTTTCGGGGAGTGCACACAGAAGTTCAACGACGATGAACTCAAGCAGGAAGAATCTAATTCGAAGCGAGAAGCTTTGT-GGAAGCGCTTAGAGGAAGCGGCTGTCCCCAGATCCGACAATAACAACCCTGT-GGGCACGCCTAATGGCAAATTCAGTCAAGCAGCTGGCTAGAAAATACCATAGCAATTACAGTCTTGCAATCCTTTAACCCCATGTGCGATTCTCTGGAAC-TTGGTTTGTGATTTTAGTGTTGAAAATTTTTTGTTGGTGAGTTGGTTTCCCCCTTGTTCTAGGCGGGTAGGATGTCTTTGGTTTCCTGAGAACTGCATGATGAAAAATGTACACAT-ACAGAAGAATTTCTGCGAGCTTTGCCCTATGTGTAGTCACATTAATCAGAATTATCATATAGTTGAATAAA-CAGTGTTAAGTTTCTGTTGCGGATACATAGTTGTGTTGCTTACTGTAATGGCAGCAATCGTTGTGTTAAAAAAAAGG] [+] EMBL AK103052 [AGAAAAAGTGGAGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTCGCTCGCCCTCAAGCCAAGAAAAGGTTCTCCTCTTCGCTCTTGCTGCTTGCGCTCCTCACCCGATCTCGCCATTCGCGTCGGCGGCCGGCCGGTTGCCCCTGCCGCCCCGGTTCTTGGATCCTAGATTTGGCTGTCCGGGGAGCGGAAAGGGTTGGATTTTTCTTTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGGGAGTGTGTTGGGGAGGGGCGATGGGGGCGTCGCCGCCGTCGCCTGATCCGATGAGGCCCCGGGCGGTGGAGTGAGCGGCTGTTCCTGGACCAGGTCTGATTCTCCGTGCTGTGGTTCAAATGATCTGGGCCTCGTGTTGATTGGGTTGGGGGAGGCTGGGTGGTGGATTCCTTCAGGTCTGGAGATCTTTGTGCTGTTGGGTGAGTTGGGAGGGAGCTGTGGGTTTGTAGATCCCTGCTGGTTGCTGCGGCTGATTTGGGTATTGCTAGGGTTTTTGGTTGGCTGTGGTGGGGGG GGGGGGGGAAGAAGATGATCAAGCAGATCCTTGGCCGGCTGCCGAGGAAGCCAGGGAAGGCCGGCGATAGCCGGGACGCCGCTGGGCCGAACGGCAATGAGCCGTCTAACTCGTACAGCGTCGCCAGGAGCGTGGAGCAAGGGAACAAGAGGAGTGGAAATGGGGATTACGTGGTGCCGGCTGGGCTGACGCCCAATCCGATGATGAATGGGACTGTGGTGTATCACTCCAACGAGCCGCTGCCGGCGTTCAAGGACGTGCCGGCCTCGGAGAAGCAGAATTTGTTTGTCAAGAAGGTGAACCTGTGCTGCGCGGTGTACGATTTCGCGGATCCGACAAAGAATCTGAAGGAAAAGGAGACGAAGCGGCAGACGCTTATGGAACTTGTTGACTATGTCACTTCTGCAAATGGCAAGTTCTCTGAAGTCGTCATGTCGGAGATTACCAAGATGGTGTCGATTAACTTGTTCCGGAGCTCCAGCCCCACCCCTCGAGAGAACAAGGCCATCGAAGGAGTTGATCTGGAGGAGGAGGAGCCTCTCATGGACCCAGCATGGTCACATTTACAGATAGTTTATGAGGTTTTCTTGAGGTTTGTCGCATCACAGGAGACAGATGCAAAGCTGGCTAAGAGATACATAGATCATTCCTTCATCCTTAGGCTACTAGATCTTTTTGATTCGGAAGACCCCAGGGAAAGGGATTATTTGAAGACAATCCTCCATCGCATATATGGTAAATTCATGGTGCACCGCCCCTTCATCAGGAAAGC AATCAACAATATTTTCTACAGGTTTATATTTGAAACAGAG AAGCATAATGGTGTTGCAGAGCTGCTGGAGATCTTGGGCAGCATAATTAATGGTTTTGCTCTTCCACTTAAAGAAGAGCACAAATTGTTCCTTGTCCGGGCACTGATCCCACTTCACAAGCCAAAATGTGTATCTATGTACCATCAGCAATTATCATACTGCATCACACAGTTTGTTGAGAAGGACTGCAAACTTGCTGACACTGTTATTAGGGGCTTGCTAAAATATTGGCCTGTGACAAACAGTTCAAAGGAGGTGATGTTCTTGGGTGAACTAGAAGAGGTTCTGGAGGCAACACAGCCTGCAGAATTCCAAAGATGCATGGTTCCACTCTTCCG TCAGATTG CCTGTAG CAT GAA TAGCT CACATTT CCAGGTGGCAG AGCGGGCGCTGTTTCTTTGGAACAATGACCA CATT GA GAACTTAATTAAGCAGAATTACAAGGTGATATTA CCCATTATCTTTCCTG CGCTTGAGAGGAATGCAAGGGGTCACTGGAA CCAAGCAGTTCGAAGCCTGACACTGAACGTA CGCAAGATCTTCTCAGATCATGATTCTGCATTTTTCGGGGAGTGCACACAGAAGTTCAACGACGATGAACTCAAGCAGGAAGAATCTAATTCGAAGCGAGAAGCTTTGT GGAAGCGCTTAGAGGAAGCGGCTGTCCCCAGATCCGACAATAACAACCCTGT GGGCACGCCTAATGGCAAATTCAGTCAAGCAGCTGGCTAGAAAATACCATAGCAATTACAGTCTTGCAATCCTTTAACCCCATGTGCGATTCTCTGGAAC TTGGTTTGTGATTTTAGTGTTGAAAATTTTTTGTTGGTGAGTTGGTTTCCCCCTTGTTCTAGGCGGGTAGGATGTCTTTGGTTTCCTGAGAACTGCATGATGAAAAATGTACACAT ACAGAAGAATTTCTGCGAGCTTTGCCCTATGTGTAGTCACATTAATCAGAATTATCATATAGTTGAATAAA CAGTGTTAAGTT ] [+] EMBL AK101208 [ TTTGGTTGGCTGTGGTGGGGGGTGGGGGGGGAAGAAGATGATCAAGCAGATCCTTGGCCGGCTGCCGAGGAAGCCAGGGAGGGCCGGCGATAGCCGGGACGCCGCTGGGCCGAACGGCAATGAGCCGTCTAACTCGTACAGCGTCGCCAGGAGCGTGGAGCAAGGGAACAAGAGGAGTGGAAATGGGGATTACGTGGTGCCGGCTGGGCTGACGCCCAATCCGATGATGAATGGGACTGTGGTGTATCACTCCAACGAGCCGCTGCCGGCGTTCAAGGACGTGCCGGCCTCGGAGAAGCAGAATTTGTTTGTCAAGAAGGTGAACCTGTGCTGCGCGGTGTACGATTTCGCGGATCCGACAAAGAATCTGAAGGAAAAGGAGACGAAGCGGCAGACGCTTATGGAACTTGTTGACTATGTCACTTCTGCAAATGGCAAGTTCTCTGAAGTCGTCATGTCGGAGATTACCAAGATGGTGTCGATTAACTTGTTCCGGAGCTCCAGCCCCACCCCTCGAGAGAACAAGGCCATCGAAGGAGTTGATCTGGAGGAGGAGGAGCCTCTCATGGACCCAGCATGGTCACATTTACAGATAGTTTATGAGGTTTTCTTGAGGTTTGTCGCATCACAGGAGACAGATGCAAAGCTGGCTAAGAGATACATAGATCATTCCTTCATCCTTAGGCTACTAGATCTTTTTGATTCGGAAGACCCCAGGGAAAGGGATTATTTGAAGACAATCCTCCATCGCATATATGGTAAATTCATGGTGCACCGCCCCTTCATCAGGAAAGC AATCAACAATATTTTCTACAGGTTTATATTTGAAACAGAG AAGCATAATGGTGTTGCAGAGCTGCTGGAGATCTTGGGCAGCATAATTAATGGTTTTGCTCTTCCACTTAAAGAAGAGCACAAATTGTTCCTTGTCCGGGCACTGATCCCACTTCACAAGCCAAAATGTGTATCTATGTACCATCAGCAATTATCATACTGCATCACACAGTTTGTTGAGAAGGACTGCAAACTTGCTGACACTGTTATTAGGGGCTTGCTAAAATATTGGCCTGTGACAAACAGTTCAAAGGAGGTGATGTTCTTGGGTGAACTAGAAGAGGTTCTGGAGGCAACACAGCCTGCAGAATTCCAAAGATGCATGGTTCCACTCTTCCG TCAGATTG CCTGTAG CAT GAA TAGCT CACATTT CCAGGTGGCAG AGCGGGCGCTGTTTCTTTGGAACAATGACCA CATT GA GAACTTAATTAAGCAGAATTACAAGGTGATATTA CCCATTATCTTTCCTG CGCTTGAGAGGAATGCAAGGGGTCACTGGAA CCAAGCAGTTCGAAGCCTGACACTGAACGTA CGCAAGATCTTCTCAGATCATGATTCTGCATTTTTCGGGGAGTGCACACAGAAGTTCAACGACGATGAACTCAAGCAGGAAGAATCTAATTCGAAGCGAGAAGCTTTGT GGAAGCGCTTAGAGGAAGCGGCTGTCCCCAGATCCGACAATAACAACCCTGT GGGCACGCCTAATGGCAAATTCAGTCAAGCAGCTGGCTAGAAAATACCATAGCAATTACAGTCTTGCAATCCTTTAACCCCATGTGCGATTCTCTGGAAC TTGGTTTGTGATTTTAGTGTTGAAAATTTTTTGTTGGTGAGTTGGTTTCCCCCTTGTTCTAGGCGGGTAGGATGTCTTTGGTTTCCTGAGAACTGCATGATGAAAAATGTACACAT ACAGAAGAATTTCTGCGAGCTTTGCCCTATGTGTAGTCACATTAATCAGAATTATCATATAGTTGAATAAA CAGTGTTAAGTT ] [+] EMBL AU032467 [ TCCTTGGCCGGCTGCCGAGGAAGCCAGGGAAGGCCGGCGATAG GNGNACGCCGCTGGGCCGAACGGCAATGAGCCGTCTAACTCGTACAGCGTCGCCAGGAGCGTGGAGCAAGGGAACAAGAGGAGTGGAAATGGGGATTACGTGGTGCCGGCTGGGCTGACGCCCAATCCGATGATGAATGGGACTGTGGTGTATCACTCCAACGAGCCGCTGCCGGCGTTCAAGGACGTGCCGGCCTCGGAGAAGCAGAATTTGTTTGTCAAGAAGGTGAACCTGTGCTGCGCGGTGTACGATTTCGCGGATCCGACAAAGAATCTGAAGGAAAAGGAGACGAAGCGGCAGACGCTTATGGAACTTGTTGACTATGTCACTTCTGCAAATGGCAAGTTCTCTGAAGTCGTCATGTCGGAGATTACCAAGATGGTGTCGATTAACTTGTTCCGGAGCTCCAGCCCCACCCCTCGAGAGAACAAGGCCATCGAAGGAGTTGATCTGGAGGAGGAGGAG ] [+] EMBL CB625982 [ GGCCGGCTGCCGAGGAAGCCAGGGAAGGCCGGCGATAGCCGGGACGCCGCTGGGCCGAACGGCAATGAGCCGTCTAACTCGTACAGCGTCGCCAGGAGCGTGGAGCAAGGGAACAAGAGGAGTGGAAATGGGGATTACGTGGTGCCGGCTGGGCTGACGCCCAATCCGATGATGAATGGGACTGTGGTGTATCACTCCAACGAGCCGCTGCCGGCGTTCAAGGACGTGCCGGCCTCGGAGAAGCAGAATTTGTTTGTCAAGAAGGTGAACCTGTGCTGCGCGGTGTACGATTTCGCGGATCCGACAAAGAATCTGAAGGAAAAGGAGACGAAGCGGCAGACGCTTATGGAACTTGTTGACTATGTCACTTCTGCAAATGGCAAGTTCTCTGAAGTCGTCATGTCGGAGATTACCAAGATGGTGTCGATTAACTTGTTCCGGAGCTCCAGCCCCACCCCTCGAGAGAACAAGGCCATCGAAGGAGTTGATCTGGAGGAGGAGGAGCCTCTCATGGACCCAGCATGGTCACATTTACAGATAGTTTATGAGGTTTTCTTGAGGTTTGTCGCATCACAGGAGACAGATGCAAAGCTGGCTAAGAGATACATAGATCATTCCTTCATCCTTAGGCTACTAGATCTTTTTGATTCGGAAGACCCCAGGGAAAGGGATTATTTGAAGACAATCCTCCATCGCATATATGGTAAATTCATGGTGCACCGCCCCTTCATCAGGAAAGC AATCAACAATATTTTCTACAGGTTTATATTTGAAACAGAG AAGCATAATGGTGTTGCAGAGCTGCTGGAGATCTTGGGCAGC ] [+] EMBL CB641713 [ GCTGCCGAGGAAGCCAGGGAAGGCCGGCGATAGCCGGGACGCCGCTGGGCCGAACGGCAATGAGCCGTCTAACTCGTACAGCGTCGCCAGGAGCGTGGAGCAAGGGAACAAGAGGAGTGGAAATGGGGATTACGTGGTGCCGGCTGGGCTGACGCCCAATCCGATGATGAATGGGACTGTGGTGTATCACTCCAACGAGCCGCTGCCGGCGTTCAAGGACGTGCCGGCCTCGGAGAAGCAGAATTTGTTTGTCAAGAAGGTGAACCTGTGCTGCGCGGTGTACGATTTCGCGGATCCGACAAAGAATCTGAAGGAAAAGGAGACGAAGCGGCAGACGCTTATGGAACTTGTTGACTATGTCACTTCTGCAAATGGCAAGTTCTCTGAAGTCGTCATGTCGGAGATTACCAAGATGGTGTCGATTAACTTGTTCCGGAGCTCCAGCCCCACCCCTCGAGAGAACAAGGCCATCGAAGGAGTTGATCTGGAGGAGGAGGAGCCTCTCATGGACCCAGCATGGTCACATTTACAGATAGTTTATGAGGTTTTCTTGAGGTTTGTCGCATCACAGGAGACAGATGCAAAGCTGGCTAAGAGATACATAGATCATTCCTTCATCCTTAGGCTACTAGATCTTTTTGATTCGGAAGACCCCAGGGAAAGGGATTATTTGAAGACAATCCTCCATCGCATATATGGTAAATTCATGGTGCACCGCCCCTTCATCAGGAAAGC AATNCACAATATTTTCTACAGGTTTATATTTGAAACAGAGAAAGCAT ATGGTGTTGCAGAGCTGCTGGAGATCTTGGGCAG ] [+] EMBL CB663346 [ AACTCGTACAGCGTCGCCAGGAGCGTGGAGCAAGGGAACAAGAGGAGTGGAAATGGGGATTACGTGGTGCCGGCTGGGCTGACGCCCAATCCGATGATGAATGGGACTGTGGTGTATCACTCCAACGAGCCGCTGCCGGCGTTCAAGGACGTGCCGGCCTCGGAGAAGCAGAATTTGTTTGTCAAGAAGGTGAACCTGTGCTGCGCGGTGTACGATTTCGCGGATCCGACAAAGAATCTGAAGGAAAAGGAGACGAAGCGGCAGACGCTTATGGAACTTGTTGACTATGTCACTTCTGCAAATGGCAAGTTCTCTGAAGTCGTCATGTCGGAGATTACCAAGATGGTGTCGATTAACTTGTTCCGGAGCTCCAGCCCCACCCCTCGAGAGAACAAGGCCATCGAAGGAGTTGATCTGGAGGAGGAGGAGCCTCTCATGGACCCAGCATGGTCACATTTACAGATAGTTTATGAGGTTTTCTTGAGGTTTGTCGCATCACAGGAGACAGATGCAAAGCTGGCTAAGAGATACATAGATCATTCCTTCATCCTTAGGCTACTAGATCTTTTTGATTCGGAAGACCCCAGGGAAAGGGATTATTTGAAGACAATCCTCCATCGCATATATGGTAAATTCATGGTGCACCGCCCCTTCATCANGAAAGCAAATC ACAATATTTTCTACAGGTTTA ] [-] EMBL CB625863 [ CAAACTTGCTGACACTGTTATTAGGGGCTTGCTAAAATATTGGCCTGTGACAAACAGTTCAAAGGAGGTGATGTTCTTGGGTGAACTAGAAGAGGTTCTGGAGGCAACACAGCCTGCAGAATTCCAAAGATGCATGGTTCCACTCTTCCG TCAGATTG CCTGTAG CAT GAA TAGCT CACATTT CCAGGTGGCAG AGCGGGCGCTGTTTCTTTGGAACAATGACCA CATT GA GAACTTAATTAAGCAGAATTACAAGGTGATATTA CCCATTATCTTTCCTG CGCTTGAGAGGAATGCAAGGGGTCACTGGAA CCAAGCAGTTCGAAGCCTGACACTGAACGTA CGCAAGATCTTCTCAGATCATGATTCTGCATTTTTCGGGGAGTGCACACAGAAGTTCAACGACGATGAACTCAAGCAGGAAGAATCTAATTCGAAGCGAGAAGCTTTGT GGAAGCGCTTAGAGGAAGCGGCTGTCCCCAGATCCGACAATAACAACCCTGT GGGCACGCCTAATGGCAAATTCAGTCAAGCAGCTGGCTAGAAAATACCATAGCAATTACAGTCTTGCAATCCTTTAACCCCATGTGCGATTCTCTGGAAC TTGGTTTGTGATTTTAGTGTTGAAAATTTTTTGTTGGTGAGTTGGTTTCCCCCTTGTTCTAGGCGGGTAGGATGTCTTTGGTTTCCTGAGAACTGCATGATGAAAAATGTACACAT ACAGAAGAATTTCTGCGAGCTTTGCCCTATGTGTAGTCACATTAATCAGAATTATCATATAGTTGAATAAA aaaagaga ] [-] EMBL CB625983 [ TGCTAAAATATTGGCCTGTGACAAACAGTTCAAAGGAGGTGATGTTCTTGGGTGAACTAGAAGAGGTTCTGGAGGCAACACAGCCTGCAGAATTCCAAAGATGCATGGTTCCACTCTTCCG TCAGATTG CCTGTAG CAT GAA TAGCT CACATTT CCAGGTGGCAG AGCGGGCGCTGTTTCTTTGGAACAATGACCA CATT GA GAACTTAATTAAGCAGAATTACAAGGTGATATTA CCCATTATCTTTCCTG CGCTTGAGAGGAATGCAAGGGGTCACTGGAA CCAAGCAGTTCGAAGCCTGACACTGAACGTA CGCAAGATCTTCTCAGATCATGATTCTGCATTTTTCGGGGAGTGCACACAGAAGTTCAACGACGATGAACTCAAGCAGGAAGAATCTAATTCGAAGCGAGAAGCTTTGT GGAAGCGCTTAGAGGAAGCGGCTGTCCCCAGATCCGACAATAACAACCCTGT GGGCACGCCTAATGGCAAATTCAGTCAAGCAGCTGGCTAGAAAATACCATAGCAATTACAGTCTTGCAATCCTTTAACCCCATGTGCGATTCTCTGGAAC TTGGTTTGTGATTTTAGTGTTGAAAATTTTTTGTTGGTGAGTTGGTTTCCCCCTTGTTCTAGGCGGGTAGGATGTCTTTGGTTTCCTGAGAACTGCATGATGAAAAATGTACACAT ACAGAAGAATTTCTGCGAGCTTTGCCCTATGTGTAGTCACATTAATCAGAATTATCATATAGTTGAATAAA aaaaaga ] [+] EMBL AU057747 [ CAAACAGTTCAAAGGAGGTGATGTTCTTGGGTGAACTAGAAGAGGTTCTGGAGGCAACACAGCCTGCAGAATTCCAAAGATGCATGGTTCCACTCTTCCG TCAGATTG CCTGTAG CAT GAA TAGCT CACATTT CCAGGTGGCAG AGCGGGCGCTGTTTCTTTGGAACAATGACCA CATT GA GAACTTAATTAAGCAGAATTACAAGGTGATATTA CCCATTATCTTTCCTG CGCTTGAGAGGAATGCAAGGGGTCACTGGAA CCAAGCAGTTCGAAGCCTGACACTGAACGTA CGCAAGATCTTCTCAGATCATGATTCTGCATTTTTCGGGGAGTGCACACAGAAGTTCAACGACGATGAACTCAAGCAGGAAGAATCTAATTCGAAGCGAGAAGCTTTGTGGGAAGCGCTTAGAGGAAGCGGCTGTCCCCAGATCCGACAATAACAACCCTGTGGGGCACGCCTAATGGCAAATTCAGTCAAGCAGCTGGCTAGAAAATACCATAGCAATTACAGTCTTGCAATCCTTTAACCCCATGTGCGATTCTCTGGAACTTTGGTTTGTGATTTTAGTGTTGAAAATTTTTTGGTGGTGAGTTGGGTTCCCCCTTGTTCTAGGCGGGTAGGATGTCNTTGGGTTCCTGAGAACTGCATGATGGAAAATGTACACATNCCAGAAGAATT ] [-] EMBL CB641714 [ CAAAGGAGGTGATGTTCTTGGGTGAACTAGAAGAGGTTCTGGAGGCAACACAGCCTGCAGAATTCCAAAGATGCATGGTTCCACTCTTCCG TCAGATTG CCTGTAG CAT GAA TAGCT CACATTT CCAGGTGGCAG AGCGGGCGCTGTTTCTTTGGAACAATGACCA CATT GA GAACTTAATTAAGCAGAATTACAAGGTGATATTA CCCATTATCTTTCCTG CGCTTGAGAGGAATGCAAGGGGTCACTGGAA CCAAGCAGTTCGAAGCCTGACACTGAACGTA CGCAAGATCTTCTCAGATCATGATTCTGCATTTTTCGGGGAGTGCACACAGAAGTTCAACGACGATGAACTCAAGCAGGAAGAATCTAATTCGAAGCGAGAAGCTTTGT GGAAGCGCTTAGAGGAAGCGGCTGTCCCCAGATCCGACAATAACAACCCTGT GGGCACGCCTAATGGCAAATTCAGTCAAGCAGCTGGCTAGAAAATACCATAGCAATTACAGTCTTGCAATCCTTTAACCCCATGTGCGATTCTCTGGAAC TTGGTTTGTGATTTTAGTGTTGAAAATTTTTTGTTGGTGAGTTGGTTTCCCCCTTGTTCTAGGCGGGTAGGATGTCTTTGGTTTCCTGAGAACTGCATGATGAAAAATGTACACAT ACAGAAGAATTTCTGCGAGCTTTGCCCTATGTGTAGTCACATTAATCAGAATTATCATATAGTTGAATAAA CAGTGTTAAGTTTCTGTTGCGGATACATAGTTGTGTTGCTTACTGTAATGGCAGCAATCGTTGTGTTAAAAAAAAGG] [-] EMBL CB663347 [ GATGCATGGTTCCACTCTTCCG TCAGATTG CCTGTAG CAT GAA TAGCT CACATTT CCAGGTGGCAG AGCGGGCGCTGTTTCTTTGGAACAATGCCCC CATT GA GAACTTAATTAAGCAGAATTCCAAGGTGATATTC CCCATTATCTTTCCTG CGCTTGAGAGGAATGCAAGGGGTCACTGGAA CCAAGCAGTTGGAAGCCTGACACTGAACGTA CGCAAGATCTTCTCAGATCATGATTCTGCATTTTTCGGGGAGTGCCCCCAGAAGTTCAACGACGATGAACTCAAGCAGGAAGAATTTAATTCGAAGCGAGAAGCTTTGT GGAAGCGCTTAGAGGAAGCGGCTGTCCCCAGATCCGACAATAACAACCCTGT GGGCACGCCTAATGGCAAATTCAGTCAAGCAGCTGGCTAGAAAATCCCATAGCAATTCCAGTCTTGCAATCCTTTAACCCCATGTGGGATTTTCTGGAAC TTGGTTTGTGATTTTAGTGTTGAAAATTTTTTGTTGGTGAGTTGGTTTCCCCCTTGTTCTAGGCGGGTAGGATGTCTTTGGTTTCCTGAGAACTGCATGATGAAAAATGTCCCCAT CCAGAAGAATTTCTGCGAGCTTTGCCCTATGTGTAGTCCCATTAATCAGAATTATCATATAGTTGAATAAACCAGTG ] [+] EMBL AU057748 [ CACTCTTCCGTTCAGATTGCCCTGTAGCCATGGAATTAGCTCCACATTTTCCCAGGTGGCAGAACCGGCCGCTGTTTCTTTGGAAC ATGNCCACCATTGGAGGAACTTAATTANGCAGAATTACAAGGTGATATTACCCCATTATCTTTCCTGCCGCTTGAGAGGAATGCAAGGGGTCACTGGAACCCAAGCAGTTCGAAGCNTGACACTGAACGTACCGCAAGATCTTCTCAGATCATGATTCTGCATTTTTCGGGGAGTGCACACAGAAGTTCAACGACGATGAACTCAANCAGGAAGAATCTAATTCGAAGCGAGAAGCTTTGT GGAAGCGCTTAGAGGAAGCGGCTGTCCCCAGATCCGACAATAACAACCCTGT GGGCACGCCTAATGGCAAATTCAGTCAAGCAGCTGGCTAGAAAATACCATAGCAATTACAGTCTTGCAATCCTTTAACCCCATGTGCGATTCTCTGGAAC TTGGTTTGTGATTTTAGTGTTGAAAATTTTTTGTTGGTGAGTTGGTTTCCCCCTTGTTCTAGGCGGGTAGGATGTCTTTGGTTTCCTGAGAACTGCATGATGAAAAATGTACACAT ACAGAAGAATTTCTGCGAGCTTTGCCCTATGTGTAGTCACATTAATCAGAATTATCATATAGTTGAATAAA CAGTGTTAAGTTTCTGTTGCGGATAaaaa ] consensusID : consensus_13842#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 975 fasta sequence [TGCTATGTAAATACCATTTATCTTGCAAGCTGCTACTCATCTATCTAGCAAAATAATGCAGTGCCTTGGTACCATCTGTTGTCTTGGAATGGTATTTTATGTCTATCATGTTGGTCCAGTGGTTCTGCCTAGTTATATGTGATTTGCTGAAGCATTTTTGTAGTTTATTAAACATTTCCTGTAGATGGATGCCTAGATACTTGGTGACATCTGAGAAACATATTGAGAAATTAGTGTGTTTAGAAAAACATATAGCCTGGCTTACCTTTTCTTTTCCTTGTCTGTTCCTAGGTGGCAGAGCGGGCGCTGTTTCTTTGGAACAATGACCACATTGAGAACTTAATTAAGCAGAATT-ACAAGGTGATATTACCCATTATCTTTCCTG-CGCTTGAGAGGAATGCAAGGGGTCACTGGAACCAAGCAGTTCGAAGCCTGACACTGAACGTACGCAAGATCTTCTCAGATCATGATTCTGCATTTTTCGGGGAGTGCACACAGAAGTTCAACGACGATGAACTCAAGCAGGAAGAATCTAATTCGAAGCGAGAAGCTTTGTGGAAGCGCTTAGAGGAAGCGGCTGTCCCCAGATCCGACAATAACAACCCTGTGGGCACGCCTAATGGCAAATTCAGTCAAGCAGCTGGCTAGAAAATACCATAGCAATTACAGTCTTGCAATCCTTTAACCCCATGTGCGATTCTCTGGAACTTGGTTTGTGATTTTAGTGTTGAAAATTTTTTGTTGGTGAGTTGGTTTCCCCCTTGTTCTAGGCGGGTAGGATGTCTTTGGTTTCCTGAGAACTGCATGATGAAAAATGTACACATACAGAAGAATTTCTGCGAGCTTTGCCCTATGTGTAGTCACATTAATCAGAATTATCATATAGTTGAATAAACAGTGTTAAGTTTCTGTTGCGGATACATAGTTGTGTTGCTTACTGTAATGGCAGCAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CB096358 [TGCTATGTAAATACCATTTATCTTGCAAGCTGCTACTCATCTATCTAGCAAAATAATGCAGTGCCTTGGTACCATCTGTTGTCTTGGAATGGTATTTTATGTCTATCATGTTGGTCCAGTGGTTCTGCCTAGTTATATGTGATTTGCTGAAGCATTTTTGTAGTTTATTAAACATTTCCTGTAGATGGATGCCTAGATACTTGGTGACATCTGAGAAACATATTGAGAAATTAGTGTGTTTAGAAAAACATATAGCCTGGCTTACCTTTTCTTTTCCTTGTCTGTTCCTAGGTGGCAGAGCGGGCGCTGTTTCTTTGGAACAATGACCACATTGAGAACTTAATTAAGCAGAATT ACAAGGTGATATTACCCATTATCTTTCCTG CGCTTGAGAGGAATGCAAGGGGTCACTGGAACCAAGCAGTTCGAAGCCTGACACTGAACGTACGCAAGATCTTCTCAGATCATGATTCTGCATTTTTCGGGGAGTGCACACAGAAGTTCAACGACGATGAACTCAAGCAGGAAGAATCTAATTCGAAGCGAGAAGCTTTGTGGAAGCGCTTAGAGGAAGCGGCTGTCCCCAGATCCGACAATAACAACCCTGTGGGCACGCCTAATGGCAAATTCAGTCAAGCAGCTGGCTAGAAAATACCATAGCAATTACAGTCTTGCAA ] [+] EMBL AU032466 [ nGCAGATTTCCCAAGGTGATTTTCCCCATTATCTTTCCTGCCGCTTGAGAGGAATGCAAGGGGTCACTGGAACCAAGCAGTTCGAAGCCTGACACTGACCGTNCGCAAGATCTTCTCAGATCATGATTCTGCATTTTTCGGGGAGTNCACACAGAAGTTCAACGACGATGANCTCAAGCAGGAAGAATCTAATTCGAAGCGAGAAGCTTTGTGGAAGCGCTTAGAGGAAGCGGCTGTCCCCAGATCCGACAATAACAACCCTGTGGGCACGCCTAATGGCAAATTCAGTCAAGCAGCTGGCTAGAAAATACCATAGCAATTACAGTCTTGCAATCCTTTAACCCCATGTGCGATTCTCTGGAACTTGGTTTGTGATTTTAGTGTTGAAAATTTTTTGTTGGTGAGTTGGTTTCCCCCTTGTTCTAGGCGGGTAGGATGTCTTTGGTTTCCTGAGAACTGCATGATGAAAAATGTACACATACAGAAGAATTTCTGCGAGCTTTGCCCTATGTGTAGTCACATTAATCAGAATTATCATATAGTTGAATAAACAGTGTTAAGTTTCTGTTGCGGATACATAGTTGTGTTGCTTACTGTAATGGCAGCAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13842#0 AGAAAAAGTGGAGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTC 60 consensus_13842#1 ------------------------------------------------------------ consensus_13842#0 GCTCGCCCTCAAGCCAAGAAAAGGTTCTCCTCTTCGCTCTTGCTGCTTGCGCTCCTCACC 120 consensus_13842#1 ------------------------------------------------------------ consensus_13842#0 CGATCTCGCCATTCGCGTCGGCGGCCGGCCGGTTGCCCCTGCCGCCCCGGTTCTTGGATC 180 consensus_13842#1 ------------------------------------------------------------ consensus_13842#0 CTAGATTTGGCTGTCCGGGGAGCGGAAAGGGTTGGATTTTTCTTTTTTTGTTTTTGTTTT 240 consensus_13842#1 ------------------------------------------------------------ consensus_13842#0 TGTTTTTGTTTTTGGGAGTGTGTTGGGGAGGGGCGATGGGGGCGTCGCCGCCGTCGCCTG 300 consensus_13842#1 ------------------------------------------------------------ consensus_13842#0 ATCCGATGAGGCCCCGGGCGGTGGAGTGAGCGGCTGTTCCTGGACCAGGTCTGATTCTCC 360 consensus_13842#1 ------------------------------------------------------------ consensus_13842#0 GTGCTGTGGTTCAAATGATCTGGGCCTCGTGTTGATTGGGTTGGGGGAGGCTGGGTGGTG 420 consensus_13842#1 ------------------------------------------------------------ consensus_13842#0 GATTCCTTCAGGTCTGGAGATCTTTGTGCTGTTGGGTGAGTTGGGAGGGAGCTGTGGGTT 480 consensus_13842#1 ------------------------------------------------------------ consensus_13842#0 TGTAGATCCCTGCTGGTTGCTGCGGCTGATTTGGGTATTGCTAGGGTTTTTGGTTGGCTG 540 consensus_13842#1 ------------------------------------------------------------ consensus_13842#0 TGGTGGGGGGGGGGGGGGAAGAAGATGATCAAGCAGATCCTTGGCCGGCTGCCGAGGAAG 600 consensus_13842#1 ------------------------------------------------------------ consensus_13842#0 CCAGGGAAGGCCGGCGATAGCCGGGACGCCGCTGGGCCGAACGGCAATGAGCCGTCTAAC 660 consensus_13842#1 ------------------------------------------------------------ consensus_13842#0 TCGTACAGCGTCGCCAGGAGCGTGGAGCAAGGGAACAAGAGGAGTGGAAATGGGGATTAC 720 consensus_13842#1 ------------------------------------------------------------ consensus_13842#0 GTGGTGCCGGCTGGGCTGACGCCCAATCCGATGATGAATGGGACTGTGGTGTATCACTCC 780 consensus_13842#1 ------------------------------------------------------------ consensus_13842#0 AACGAGCCGCTGCCGGCGTTCAAGGACGTGCCGGCCTCGGAGAAGCAGAATTTGTTTGTC 840 consensus_13842#1 ------------------------------------------------------------ consensus_13842#0 AAGAAGGTGAACCTGTGCTGCGCGGTGTACGATTTCGCGGATCCGACAAAGAATCTGAAG 900 consensus_13842#1 ------------------------------------------------------------ consensus_13842#0 GAAAAGGAGACGAAGCGGCAGACGCTTATGGAACTTGTTGACTATGTCACTTCTGCAAAT 960 consensus_13842#1 ------------------------------------------------------------ consensus_13842#0 GGCAAGTTCTCTGAAGTCGTCATGTCGGAGATTACCAAGATGGTGTCGATTAACTTGTTC 1020 consensus_13842#1 ------------------------------------------------------------ consensus_13842#0 CGGAGCTCCAGCCCCACCCCTCGAGAGAACAAGGCCATCGAAGGAGTTGATCTGGAGGAG 1080 consensus_13842#1 ------------------------------------------------------------ consensus_13842#0 GAGGAGCCTCTCATGGACCCAGCATGGTCACATTTACAGATAGTTTATGAGGTTTTCTTG 1140 consensus_13842#1 ------------------------------------------------------------ consensus_13842#0 AGGTTTGTCGCATCACAGGAGACAGATGCAAAGCTGGCTAAGAGATACATAGATCATTCC 1200 consensus_13842#1 ------------------------------------------------------------ consensus_13842#0 TTCATCCTTAGGCTACTAGATCTTTTTGATTCGGAAGACCCCAGGGAAAGGGATTATTTG 1260 consensus_13842#1 ------------------------------------------------------------ consensus_13842#0 AAGACAATCCTCCATCGCATATATGGTAAATTCATGGTGCACCGCCCCTTCATCAGGAAA 1320 consensus_13842#1 ------------------------------------------------------------ consensus_13842#0 GCAATCAACAATATTTTCTACAGGTTTATATTTGAAACAGAGAAGCATAATGGTGTTGCA 1380 consensus_13842#1 ------------------------------------------------------------ consensus_13842#0 GAGCTGCTGGAGATCTTGGGCAGCATAATTAATGGTTTTGCTCTTCCACTTAAAGAAGAG 1440 consensus_13842#1 -------------------------------------------------TGCTATGTAAA 11 * * * consensus_13842#0 CACAAATTGTTCCTTGTCCGGGCACTGATCCCACTTCACAAGCCAAAATGTGTATCTATG 1500 consensus_13842#1 TACCATTTATCTTGCAAGCTGCTACTCATCT-ATCTAGCAAAATAATGCA-GTGCCTTGG 69 ** * ** * * * *** *** * * *** ** ** ** * consensus_13842#0 TACCATCAGCAATTATCATACTGCATCACACAGTTTGTTGAGAAGGACTGCAAACTTGCT 1560 consensus_13842#1 TACCATCTGTTGTCTTGGAATGGTATTTTAT-GTCTATCATGTTGGTC--CAGTGGTTCT 126 ******* * * * * * ** * ** * * * ** * ** * ** consensus_13842#0 GACACTGTTATTAGGGGCTTGCTAAAATATTGGCCTG---TGACAAACAGTTCAAAGGAG 1617 consensus_13842#1 G-CCTAGTTATATGTGATTTGCTGAAGCATTTTTGTAGTTTATTAAACATTTCCTGTAGA 185 * * ***** * * ***** ** *** * * ***** *** consensus_13842#0 GTGATGTTCTTGGGTGAACTAGAAGAGGTTCTGGAGGCAACACAGCCTGCAGAATTCCAA 1677 consensus_13842#1 TGGATG--CCTAGAT--ACTTGGTGACATCTGAGA---AACATA--TTGAGAAATT---A 233 **** * * * * *** * ** * ** **** * ** **** * consensus_13842#0 AGATGCATGGTTCCACTCTTCCGTCAGATTGCCTGTAGCATGAATAGCTCACATTTCCAG 1737 consensus_13842#1 GTGTGTTTAGAAAAACATATAGCCTGGCTTACCTTTTCTTTTCCTTGTCTG--TTCCTAG 291 ** * * ** * * ** *** * * * * ** * ** consensus_13842#0 GTGGCAGAGCGGGCGCTGTTTCTTTGGAACAATGACCACATTGAGAACTTAATTAAGCAG 1797 consensus_13842#1 GTGGCAGAGCGGGCGCTGTTTCTTTGGAACAATGACCACATTGAGAACTTAATTAAGCAG 351 ************************************************************ consensus_13842#0 AATTACAAGGTGATATTACCCATTATCTTTCCTGCGCTTGAGAGGAATGCAAGGGGTCAC 1857 consensus_13842#1 AATTACAAGGTGATATTACCCATTATCTTTCCTGCGCTTGAGAGGAATGCAAGGGGTCAC 411 ************************************************************ consensus_13842#0 TGGAACCAAGCAGTTCGAAGCCTGACACTGAACGTACGCAAGATCTTCTCAGATCATGAT 1917 consensus_13842#1 TGGAACCAAGCAGTTCGAAGCCTGACACTGAACGTACGCAAGATCTTCTCAGATCATGAT 471 ************************************************************ consensus_13842#0 TCTGCATTTTTCGGGGAGTGCACACAGAAGTTCAACGACGATGAACTCAAGCAGGAAGAA 1977 consensus_13842#1 TCTGCATTTTTCGGGGAGTGCACACAGAAGTTCAACGACGATGAACTCAAGCAGGAAGAA 531 ************************************************************ consensus_13842#0 TCTAATTCGAAGCGAGAAGCTTTGTGGAAGCGCTTAGAGGAAGCGGCTGTCCCCAGATCC 2037 consensus_13842#1 TCTAATTCGAAGCGAGAAGCTTTGTGGAAGCGCTTAGAGGAAGCGGCTGTCCCCAGATCC 591 ************************************************************ consensus_13842#0 GACAATAACAACCCTGTGGGCACGCCTAATGGCAAATTCAGTCAAGCAGCTGGCTAGAAA 2097 consensus_13842#1 GACAATAACAACCCTGTGGGCACGCCTAATGGCAAATTCAGTCAAGCAGCTGGCTAGAAA 651 ************************************************************ consensus_13842#0 ATACCATAGCAATTACAGTCTTGCAATCCTTTAACCCCATGTGCGATTCTCTGGAACTTG 2157 consensus_13842#1 ATACCATAGCAATTACAGTCTTGCAATCCTTTAACCCCATGTGCGATTCTCTGGAACTTG 711 ************************************************************ consensus_13842#0 GTTTGTGATTTTAGTGTTGAAAATTTTTTGTTGGTGAGTTGGTTTCCCCCTTGTTCTAGG 2217 consensus_13842#1 GTTTGTGATTTTAGTGTTGAAAATTTTTTGTTGGTGAGTTGGTTTCCCCCTTGTTCTAGG 771 ************************************************************ consensus_13842#0 CGGGTAGGATGTCTTTGGTTTCCTGAGAACTGCATGATGAAAAATGTACACATACAGAAG 2277 consensus_13842#1 CGGGTAGGATGTCTTTGGTTTCCTGAGAACTGCATGATGAAAAATGTACACATACAGAAG 831 ************************************************************ consensus_13842#0 AATTTCTGCGAGCTTTGCCCTATGTGTAGTCACATTAATCAGAATTATCATATAGTTGAA 2337 consensus_13842#1 AATTTCTGCGAGCTTTGCCCTATGTGTAGTCACATTAATCAGAATTATCATATAGTTGAA 891 ************************************************************ consensus_13842#0 TAAACAGTGTTAAGTTTCTGTTGCGGATACATAGTTGTGTTGCTTACTGTAATGGCAGCA 2397 consensus_13842#1 TAAACAGTGTTAAGTTTCTGTTGCGGATACATAGTTGTGTTGCTTACTGTAATGGCAGCA 951 ************************************************************ consensus_13842#0 ATCGTTGTGTTAAAAAAAAGG--- 2418 consensus_13842#1 AAAAAAAAAAAAAAAAAAAAAAAA 975 * ******** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||